Raspbian Package Auto-Building

python-cobra → 0.26.0-1 → armhf → 2022-11-30 06:14:13

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| python-cobra 0.26.0-1 (armhf)                Wed, 30 Nov 2022 05:06:05 +0000 |
+==============================================================================+

Package: python-cobra
Version: 0.26.0-1
Source Version: 0.26.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-6d09b278-a807-4d13-b2f1-dfcb10a63c56' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.7 MB in 28s (978 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3757 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-cobra 0.26.0-1 (dsc) [3107 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-cobra 0.26.0-1 (tar) [3745 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-cobra 0.26.0-1 (diff) [9448 B]
Fetched 3757 kB in 0s (9150 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-yyAPZ6/python-cobra-0.26.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-yyAPZ6' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-T9fA7J/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-T9fA7J/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-T9fA7J/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2758 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
  sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 79 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15027 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-importlib-resources, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-importlib-resources, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-T9fA7J/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Sources [720 B]
Get:5 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ Packages [781 B]
Fetched 2834 B in 1s (3838 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev blt bsdextrautils bsdutils
  ca-certificates cpp-12 cython3 debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core
  fonts-lyx g++-12 gcc-12 gcc-12-base gettext gettext-base groff-base
  intltool-debian libamd2 libarchive-zip-perl libasan8 libatomic1 libblas-dev
  libblas3 libblkid1 libbrotli1 libbsd0 libbtf1 libcamd2 libcc1-0 libccolamd2
  libcholmod3 libcolamd2 libcxsparse3 libdebhelper-perl libdeflate0 libelf1
  libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgfortran5 libglib2.0-0
  libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgomp1 libgraphite2-3
  libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
  libjs-jquery-ui libjs-sphinxdoc libjs-underscore libklu1 liblapack-dev
  liblapack3 liblbfgsb0 liblcms2-2 libldl2 liblerc4 libltdl7 libmagic-mgc
  libmagic1 libmd0 libmetis5 libmongoose2 libmount1 libmpdec3 libopenjp2-7
  libpipeline1 libpng16-16 libpython3-dev libpython3-stdlib libpython3.10
  libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0
  libraqm0 librbio2 libsbml5 libsliplu1 libsmartcols1 libspqr2 libssl3
  libstdc++-12-dev libstdc++6 libsub-override-perl libsuitesparse-dev
  libsuitesparseconfig5 libtcl8.6 libtiff5 libtk8.6 libtool libubsan1
  libuchardet0 libumfpack5 libuuid1 libwebp7 libwebpdemux2 libwebpmux3
  libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxrender1 libxslt1.1 libxss1 m4 man-db media-types mount openssl
  po-debconf python-matplotlib-data python3 python3-anyio python3-appdirs
  python3-attr python3-brotli python3-certifi python3-chardet
  python3-charset-normalizer python3-click python3-colorama python3-commonmark
  python3-cpuinfo python3-cycler python3-dateutil python3-decorator
  python3-depinfo python3-dev python3-diskcache python3-distutils
  python3-fonttools python3-fs python3-future python3-h11 python3-httpcore
  python3-httpx python3-idna python3-importlib-resources python3-iniconfig
  python3-jsonschema python3-kiwisolver python3-lib2to3 python3-lxml
  python3-lz4 python3-matplotlib python3-minimal python3-more-itertools
  python3-mpmath python3-numpy python3-optlang python3-packaging
  python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
  python3-pip python3-pipdeptree python3-pkg-resources python3-pluggy
  python3-py python3-pydantic python3-pygments python3-pyparsing
  python3-pyrsistent python3-pytest python3-pytest-benchmark
  python3-pytest-mock python3-requests python3-rfc3986 python3-rich
  python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-scipy
  python3-setuptools python3-simplejson python3-six python3-sniffio
  python3-swiglpk python3-sympy python3-tabulate python3-tk python3-tomli
  python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2
  python3-urllib3 python3-wheel python3-zipp python3.10 python3.10-dev
  python3.10-minimal swig swig4.0 tk8.6-blt2.5 ucf unicode-data util-linux
  util-linux-extra x11-common zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo gcc-12-locales
  cpp-12-doc cython-doc dh-make flit python3-build python3-installer
  gcc-12-doc gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc
  low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gmp-doc
  libgmp10-doc libmpfr-dev libjs-jquery-ui-docs liblcms2-utils cryptsetup-bin
  libstdc++-12-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler
  gcj-jdk m4-doc apparmor less www-browser nfs-common libmail-box-perl
  python3-doc python3-venv python-attr-doc python-cycler-doc python-future-doc
  python-jsonschema-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
  fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
  python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
  python3-gobject python3-pyqt5 python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
  gfortran python-numpy-doc python-pandas-doc python3-statsmodels
  python-pil-doc subversion python-pygments-doc ttf-bitstream-vera
  python-pyparsing-doc python-pytest-mock-doc python3-mock
  python3-cryptography python3-openssl python3-socks python-requests-doc
  python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc
  tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support swig-doc
  swig-examples swig4.0-examples swig4.0-doc dosfstools kbd util-linux-locales
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common libgraphblas-dev libltdl-dev uuid-runtime
  libmail-sendmail-perl python3-json-pointer python3-rfc3987
  python3-uritemplate python3-webcolors python3-bs4 python3-html5lib
  python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt
  python3-tables python3-jinja2 python3-olefile python3-graphviz
  python3-elasticsearch python3-freezegun python3-pygal isympy-common
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev blt bsdextrautils ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
  groff-base intltool-debian libamd2 libarchive-zip-perl libblas-dev libblas3
  libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2
  libcxsparse3 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
  libgraphite2-3 libharfbuzz0b libicu72 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore libklu1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2
  libldl2 liblerc4 libltdl7 libmagic-mgc libmagic1 libmd0 libmetis5
  libmongoose2 libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
  libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal
  libpython3.10-stdlib libqhull-r8.0 libraqm0 librbio2 libsbml5 libsliplu1
  libspqr2 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5
  libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libumfpack5 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db
  media-types openssl po-debconf python-matplotlib-data python3 python3-anyio
  python3-appdirs python3-attr python3-brotli python3-certifi python3-chardet
  python3-charset-normalizer python3-click python3-colorama python3-commonmark
  python3-cpuinfo python3-cycler python3-dateutil python3-decorator
  python3-depinfo python3-dev python3-diskcache python3-distutils
  python3-fonttools python3-fs python3-future python3-h11 python3-httpcore
  python3-httpx python3-idna python3-importlib-resources python3-iniconfig
  python3-jsonschema python3-kiwisolver python3-lib2to3 python3-lxml
  python3-lz4 python3-matplotlib python3-minimal python3-more-itertools
  python3-mpmath python3-numpy python3-optlang python3-packaging
  python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
  python3-pip python3-pipdeptree python3-pkg-resources python3-pluggy
  python3-py python3-pydantic python3-pygments python3-pyparsing
  python3-pyrsistent python3-pytest python3-pytest-benchmark
  python3-pytest-mock python3-requests python3-rfc3986 python3-rich
  python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-scipy
  python3-setuptools python3-simplejson python3-six python3-sniffio
  python3-swiglpk python3-sympy python3-tabulate python3-tk python3-tomli
  python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2
  python3-urllib3 python3-wheel python3-zipp python3.10 python3.10-dev
  python3.10-minimal sbuild-build-depends-python-cobra-dummy swig swig4.0
  tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
  libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 libmount1 libsmartcols1 libssl3
  libstdc++-12-dev libstdc++6 libubsan1 libuuid1 mount util-linux
  util-linux-extra
22 upgraded, 206 newly installed, 0 to remove and 57 not upgraded.
Need to get 150 MB of archives.
After this operation, 493 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-T9fA7J/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1068 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-1 [1614 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.8-3 [769 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.8-3 [1478 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.8-3 [1597 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.8-3 [506 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.32-2 [1218 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6.1-1 [206 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libsuitesparseconfig5 armhf 1:5.12.0+dfsg-2 [23.6 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libamd2 armhf 1:5.12.0+dfsg-2 [30.2 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Ign:96 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libbtf1 armhf 1:5.12.0+dfsg-2 [24.1 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libcamd2 armhf 1:5.12.0+dfsg-2 [30.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libccolamd2 armhf 1:5.12.0+dfsg-2 [31.7 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libcolamd2 armhf 1:5.12.0+dfsg-2 [28.3 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libmetis5 armhf 5.1.0.dfsg-7 [133 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libcholmod3 armhf 1:5.12.0+dfsg-2 [212 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libcxsparse3 armhf 1:5.12.0+dfsg-2 [52.1 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.7-5 [390 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libglpk40 armhf 5.0-1 [327 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg1-1.1 [338 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libgmp-dev armhf 2:6.2.1+dfsg1-1.1 [582 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libklu1 armhf 1:5.12.0+dfsg-2 [51.8 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libldl2 armhf 1:5.12.0+dfsg-2 [23.8 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libmongoose2 armhf 1:5.12.0+dfsg-2 [43.8 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libumfpack5 armhf 1:5.12.0+dfsg-2 [128 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf librbio2 armhf 1:5.12.0+dfsg-2 [32.9 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libspqr2 armhf 1:5.12.0+dfsg-2 [68.2 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libsliplu1 armhf 1:5.12.0+dfsg-2 [49.5 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libsuitesparse-dev armhf 1:5.12.0+dfsg-2 [614 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libglpk-dev armhf 5.0-1 [369 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.8-3 [1458 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.8-3 [2935 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.6-1 [22.0 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libsbml5 armhf 5.19.0+dfsg-3+b1 [1662 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2+b1 [95.5 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2+b1 [103 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.2-4 [2725 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-sniffio all 1.2.0-1 [6372 B]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-typing-extensions all 4.3.0-2 [43.2 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-anyio all 3.6.2-1 [54.0 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-3 [13.0 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.1.0-1 [64.1 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.6.15-2 [154 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.5.0-1 [278 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-2 [99.1 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.5-3 [28.5 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.0.3-1 [91.9 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-commonmark all 0.9.1-4 [45.1 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-cpuinfo all 5.0.0-3 [19.2 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.2-1 [78.2 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-2 [16.5 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-depinfo armhf 1.7.0-2 [6072 B]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.8-3 [509 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.6-1 [25.4 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-diskcache all 5.4.0-1 [33.7 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-2 [3409 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-14+rpi1 [12.9 MB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.11.1-1 [4358 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.6-1 [31.8 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.9.1-1 [959 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1 [23.9 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1 [298 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.37.4-1 [983 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-6 [348 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-h11 all 0.13.0-2 [49.9 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-httpcore all 0.15.0-1 [37.1 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.13.0+dfsg-1 [767 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-rich all 12.4.4-1 [195 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-rfc3986 all 1.5.0-2 [22.2 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-httpx all 0.23.0-1 [83.3 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-4 [6160 B]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-resources all 5.1.2-2 [19.0 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-pyrsistent armhf 0.18.1-1 [57.5 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-jsonschema all 4.7.2-3 [68.5 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1+b1 [52.1 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.2.0-1.1 [427 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.10.8-1 [101 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.2.0-1.1 [71.8 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-3 [136 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1.1 [34.2 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.2-4 [6479 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf python3-swiglpk armhf 4.65.1-1+b1 [71.3 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf python3-optlang all 1.5.2-1 [81.2 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-6 [2906 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-6 [2646 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.5.0-1 [519 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf python3-wheel all 0.38.4-1 [30.8 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf python3-pip all 22.3+dfsg-1 [1322 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf python3-pipdeptree armhf 2.2.0-3 [20.6 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf python3-pydantic all 1.10.2-1 [170 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-1 [18.1 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.1.2-4 [218 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-benchmark all 3.2.2-3 [46.4 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-mock all 3.8.2-3 [16.5 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf python3-ruamel.yaml.clib armhf 0.2.7-1 [94.2 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf python3-ruamel.yaml all 0.17.16-1 [102 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf swig4.0 armhf 4.1.0-0.1 [1222 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf swig all 4.1.0-0.1 [321 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf python3-sbml5 armhf 5.19.0+dfsg-3+b1 [2849 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf python3-simplejson armhf 3.17.6-1 [61.5 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf python3-tabulate all 0.8.9-1 [35.2 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
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Setting up media-types (8.0.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up liblcms2-2:armhf (2.13.1-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up cpp-12 (12.2.0-9+rpi1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up liblerc4:armhf (4.0.0+ds-2) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.74.1-2) ...
No schema files found: doing nothing.
Setting up fonts-lyx (2.3.6.1-1) ...
Setting up libdebhelper-perl (13.11.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libldl2:armhf (1:5.12.0+dfsg-2) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-1) ...
Setting up libqhull-r8.0:armhf (2020.2-5) ...
Setting up libmetis5:armhf (5.1.0.dfsg-7) ...
Setting up file (1:5.41-4) ...
Setting up libgomp1:armhf (12.2.0-9+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libbtf1:armhf (1:5.12.0+dfsg-2) ...
Setting up unicode-data (15.0.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.2.1+dfsg1-1.1) ...
Setting up libexpat1-dev:armhf (2.5.0-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up libx11-data (2:1.8.1-2) ...
Setting up libfribidi0:armhf (1.0.8-2.1) ...
Setting up libimagequant0:armhf (2.17.0-1) ...
Setting up libpng16-16:armhf (1.6.38-2) ...
Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ...
Setting up autopoint (0.21-10) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up ucf (3.0043) ...
Setting up libltdl7:armhf (2.4.7-5) ...
Setting up libgfortran5:armhf (12.2.0-9+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up libwebp7:armhf (1.2.2-2+b1) ...
Setting up libubsan1:armhf (12.2.0-9+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4.1) ...
Setting up libmd0:armhf (1.0.4-2) ...
Setting up mount (2.38.1-4) ...
Setting up libasan8:armhf (12.2.0-9+rpi1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libopenjp2-7:armhf (2.5.0-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libcxsparse3:armhf (1:5.12.0+dfsg-2) ...
Setting up libtiff5:armhf (4.4.0-6) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up swig4.0 (4.1.0-0.1) ...
Setting up python-matplotlib-data (3.5.2-4) ...
Setting up openssl (3.0.7-1) ...
Setting up libwebpmux3:armhf (1.2.2-2+b1) ...
Setting up libbsd0:armhf (0.11.7-1) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1) ...
Setting up libsuitesparseconfig5:armhf (1:5.12.0+dfsg-2) ...
Setting up libcc1-0:armhf (12.2.0-9+rpi1) ...
Setting up libblas-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up librbio2:armhf (1:5.12.0+dfsg-2) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up liblapack3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-10) ...
Setting up swig (4.1.0-0.1) ...
Setting up libgmp-dev:armhf (2:6.2.1+dfsg1-1.1) ...
Setting up libcolamd2:armhf (1:5.12.0+dfsg-2) ...
Setting up libtool (2.4.7-5) ...
Setting up fontconfig-config (2.13.1-4.5) ...
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Setting up libsliplu1:armhf (1:5.12.0+dfsg-2) ...
Setting up libpython3.10-stdlib:armhf (3.10.8-3) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libcamd2:armhf (1:5.12.0+dfsg-2) ...
Setting up libmongoose2:armhf (1:5.12.0+dfsg-2) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up libglpk40:armhf (5.0-1) ...
Setting up libsbml5:armhf (5.19.0+dfsg-3+b1) ...
Setting up libgcc-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libjs-sphinxdoc (4.5.0-4) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-9) ...
Setting up libklu1:armhf (1:5.12.0+dfsg-2) ...
Setting up libccolamd2:armhf (1:5.12.0+dfsg-2) ...
Setting up libxslt1.1:armhf (1.1.35-1) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libharfbuzz0b:armhf (5.2.0-2+b1) ...
Setting up libcholmod3:armhf (1:5.12.0+dfsg-2) ...
Setting up libpython3-stdlib:armhf (3.10.6-1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-11) ...
Setting up libspqr2:armhf (1:5.12.0+dfsg-2) ...
Setting up libpython3.10:armhf (3.10.8-3) ...
Setting up python3.10 (3.10.8-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up libstdc++-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up python3 (3.10.6-1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-sbml5 (5.19.0+dfsg-3+b1) ...
Setting up python3-tz (2022.6-1) ...
Setting up python3-six (1.16.0-4) ...
Setting up python3-simplejson (3.17.6-1) ...
Setting up python3-decorator (5.1.1-2) ...
Setting up libumfpack5:armhf (1:5.12.0+dfsg-2) ...
Setting up python3-pyparsing (3.0.7-3) ...
Setting up python3-certifi (2022.6.15-2) ...
Setting up gcc-12 (12.2.0-9+rpi1) ...
Setting up python3-brotli (1.0.9-2+b2) ...
Setting up libraqm0:armhf (0.7.0-4) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.3.2-1+b1) ...
Setting up python3-idna (3.3-1) ...
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Setting up python3-typing-extensions (4.3.0-2) ...
Setting up python3-cpuinfo (5.0.0-3) ...
Setting up python3-urllib3 (1.26.12-1) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up python3.10-dev (3.10.8-3) ...
Setting up python3-pyrsistent:armhf (0.18.1-1) ...
Setting up python3-lxml:armhf (4.9.1-1) ...
Setting up python3-dateutil (2.8.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-diskcache (5.4.0-1) ...
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Setting up python3-appdirs (1.4.4-3) ...
Setting up python3-swiglpk (4.65.1-1+b1) ...
Setting up g++-12 (12.2.0-9+rpi1) ...
Setting up python3-commonmark (0.9.1-4) ...
Setting up python3-pkg-resources (65.5.0-1) ...
Setting up python3-distutils (3.10.8-1) ...
Setting up dh-python (5.20220819+rpi1) ...
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Setting up python3-sniffio (1.2.0-1) ...
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Setting up libpython3-dev:armhf (3.10.6-1) ...
Setting up python3-setuptools (65.5.0-1) ...
Setting up python3-tomli (2.0.1-1) ...
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Setting up libsuitesparse-dev:armhf (1:5.12.0+dfsg-2) ...
Setting up python3-anyio (3.6.2-1) ...
Setting up python3-colorama (0.4.5-3) ...
Setting up python3-lz4 (4.0.2+dfsg-1) ...
Setting up python3-charset-normalizer (3.0.1-2) ...
Setting up python3-unicodedata2 (14.0.0+ds2-1) ...
Setting up python3-ruamel.yaml.clib:armhf (0.2.7-1) ...
Setting up python3-tabulate (0.8.9-1) ...
Setting up debhelper (13.11.1) ...
Setting up python3-zipp (1.0.0-4) ...
Setting up python3-click (8.0.3-1) ...
Setting up python3-wheel (0.38.4-1) ...
Setting up python3-fs (2.4.16-2) ...
Setting up python3-pygments (2.13.0+dfsg-1) ...
Setting up python3-packaging (21.3-1.1) ...
Setting up python3-chardet (4.0.0-2) ...
Setting up python3-rfc3986 (1.5.0-2) ...
Setting up python3-jsonschema (4.7.2-3) ...
Setting up libglpk-dev:armhf (5.0-1) ...
Setting up python3-pydantic (1.10.2-1) ...
Setting up python3-dev (3.10.6-1) ...
Setting up python3-requests (2.28.1+dfsg-1) ...
Setting up python3-depinfo (1.7.0-2) ...
Setting up python3-pip (22.3+dfsg-1) ...
Setting up python3-numpy (1:1.21.5-2) ...
Setting up python3-ruamel.yaml (0.17.16-1) ...
Setting up python3-future (0.18.2-6) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-pipdeptree (2.2.0-3) ...
Setting up python3-optlang (1.5.2-1) ...
Setting up python3-httpcore (0.15.0-1) ...
Setting up python3-scipy (1.8.1-14+rpi1) ...
Setting up python3-importlib-resources (5.1.2-2) ...
Setting up python3-rich (12.4.4-1) ...
Setting up python3-pytest (7.1.2-4) ...
Setting up python3-pandas-lib:armhf (1.3.5+dfsg-6) ...
Setting up python3-pandas (1.3.5+dfsg-6) ...
Setting up python3-httpx (0.23.0-1) ...
Setting up python3-pytest-mock (3.8.2-3) ...
Setting up python3-pytest-benchmark (3.2.2-3) ...
Setting up python3-fonttools (4.37.4-1) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.10.8-1) ...
Setting up python3-pil.imagetk:armhf (9.2.0-1.1) ...
Setting up python3-pil:armhf (9.2.0-1.1) ...
Setting up python3-matplotlib (3.5.2-4) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 cython3_0.29.32-2 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6.1-1 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libamd2_1:5.12.0+dfsg-2 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-9+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-4 libboost-iostreams1.74.0_1.74.0-17 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbtf1_1:5.12.0+dfsg-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcamd2_1:5.12.0+dfsg-2 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-9+rpi1 libccolamd2_1:5.12.0+dfsg-2 libcholmod3_1:5.12.0+dfsg-2 libcolamd2_1:5.12.0+dfsg-2 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcwidget4_0.5.18-6 libcxsparse3_1:5.12.0+dfsg-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.11.1 libdeflate0_1.14-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-9+rpi1 libgcc-s1_12.2.0-9+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-9+rpi1 libglib2.0-0_2.74.1-2 libglpk-dev_5.0-1 libglpk40_5.0-1 libgmp-dev_2:6.2.1+dfsg1-1.1 libgmp10_2:6.2.1+dfsg1-1.1 libgmpxx4ldbl_2:6.2.1+dfsg1-1.1 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man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.7-1 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.5.2-4 python3_3.10.6-1 python3-anyio_3.6.2-1 python3-appdirs_1.4.4-3 python3-attr_22.1.0-1 python3-brotli_1.0.9-2+b2 python3-certifi_2022.6.15-2 python3-chardet_4.0.0-2 python3-charset-normalizer_3.0.1-2 python3-click_8.0.3-1 python3-colorama_0.4.5-3 python3-commonmark_0.9.1-4 python3-cpuinfo_5.0.0-3 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-1 python3-decorator_5.1.1-2 python3-depinfo_1.7.0-2 python3-dev_3.10.6-1 python3-diskcache_5.4.0-1 python3-distutils_3.10.8-1 python3-fonttools_4.37.4-1 python3-fs_2.4.16-2 python3-future_0.18.2-6 python3-h11_0.13.0-2 python3-httpcore_0.15.0-1 python3-httpx_0.23.0-1 python3-idna_3.3-1 python3-importlib-resources_5.1.2-2 python3-iniconfig_1.1.1-2 python3-jsonschema_4.7.2-3 python3-kiwisolver_1.3.2-1+b1 python3-lib2to3_3.10.8-1 python3-lxml_4.9.1-1 python3-lz4_4.0.2+dfsg-1 python3-matplotlib_3.5.2-4 python3-minimal_3.10.6-1 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-numpy_1:1.21.5-2 python3-optlang_1.5.2-1 python3-packaging_21.3-1.1 python3-pandas_1.3.5+dfsg-6 python3-pandas-lib_1.3.5+dfsg-6 python3-pil_9.2.0-1.1 python3-pil.imagetk_9.2.0-1.1 python3-pip_22.3+dfsg-1 python3-pipdeptree_2.2.0-3 python3-pkg-resources_65.5.0-1 python3-pluggy_1.0.0+repack-1 python3-py_1.11.0-1 python3-pydantic_1.10.2-1 python3-pygments_2.13.0+dfsg-1 python3-pyparsing_3.0.7-3 python3-pyrsistent_0.18.1-1 python3-pytest_7.1.2-4 python3-pytest-benchmark_3.2.2-3 python3-pytest-mock_3.8.2-3 python3-requests_2.28.1+dfsg-1 python3-rfc3986_1.5.0-2 python3-rich_12.4.4-1 python3-ruamel.yaml_0.17.16-1 python3-ruamel.yaml.clib_0.2.7-1 python3-sbml5_5.19.0+dfsg-3+b1 python3-scipy_1.8.1-14+rpi1 python3-setuptools_65.5.0-1 python3-simplejson_3.17.6-1 python3-six_1.16.0-4 python3-sniffio_1.2.0-1 python3-swiglpk_4.65.1-1+b1 python3-sympy_1.11.1-1 python3-tabulate_0.8.9-1 python3-tk_3.10.8-1 python3-tomli_2.0.1-1 python3-typing-extensions_4.3.0-2 python3-tz_2022.6-1 python3-ufolib2_0.13.1+dfsg1-1 python3-unicodedata2_14.0.0+ds2-1 python3-urllib3_1.26.12-1 python3-wheel_0.38.4-1 python3-zipp_1.0.0-4 python3.10_3.10.8-3 python3.10-dev_3.10.8-3 python3.10-minimal_3.10.8-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 swig_4.1.0-0.1 swig4.0_4.1.0-0.1 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2022d-1 ucf_3.0043 unicode-data_15.0.0-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 x11-common_1:7.7+23 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.tXkGraj8/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 24 14:38:14 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-cobra_0.26.0-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.26.0.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.26.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying xfail_test_show_versions.patch
dpkg-source: info: applying ignore_tests.patch
dpkg-source: info: applying do-not-seek-for-name.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-6d09b278-a807-4d13-b2f1-dfcb10a63c56
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.26.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:240: python3.10 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.10 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra
copying src/cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra
copying src/cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
copying src/cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
copying src/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
copying src/cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
copying src/cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
copying src/cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
copying src/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
copying src/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/manipulation
copying src/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/manipulation
copying src/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/manipulation
copying src/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/manipulation
copying src/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/manipulation
copying src/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/medium
copying src/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/medium
copying src/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/medium
copying src/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/medium
copying src/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/sampling
copying src/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/sampling
copying src/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/sampling
copying src/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/sampling
copying src/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/sampling
copying src/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/sampling
copying src/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/summary
copying src/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/summary
copying src/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/summary
copying src/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/summary
copying src/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/summary
copying src/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util
copying src/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util
copying src/cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util
copying src/cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util
copying src/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util
copying src/cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util
copying src/cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/web
copying src/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/web
copying src/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/web
copying src/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/web
copying src/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/web
copying src/cobra/io/web/cobrapy_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/web
copying src/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/web
copying src/cobra/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/data/salmonella.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/data
copying src/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build; python3.10 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.10.8, pytest-7.1.2, pluggy-1.0.0+repack
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, configfile: tox.ini
plugins: anyio-3.6.2, benchmark-3.2.2, mock-3.8.2
collected 548 items

tests/test_core/test_configuration.py ......                             [  1%]
tests/test_core/test_core_reaction.py ..........ss...................... [  7%]
...................x......                                               [ 12%]
tests/test_core/test_dictlist.py ......................                  [ 16%]
tests/test_core/test_formula.py .....                                    [ 16%]
tests/test_core/test_gene.py .                                           [ 17%]
tests/test_core/test_gpr.py .....................x..x................... [ 25%]
..........................                                               [ 29%]
tests/test_core/test_group.py ..                                         [ 30%]
tests/test_core/test_metabolite.py ...ss.ss.                             [ 31%]
tests/test_core/test_model.py .......................................... [ 39%]
...........s..s.ss.                                                      [ 43%]
tests/test_core/test_solution.py .ss                                     [ 43%]
tests/test_flux_analysis/test_deletion.py F...s.....                     [ 45%]
tests/test_flux_analysis/test_fastcc.py ...F                             [ 46%]
tests/test_flux_analysis/test_geometric.py ..                            [ 46%]
tests/test_flux_analysis/test_moma.py .                                  [ 46%]
tests/test_flux_analysis/test_parsimonious.py ..                         [ 47%]
tests/test_flux_analysis/test_reaction.py .                              [ 47%]
tests/test_flux_analysis/test_room.py ....                               [ 47%]
tests/test_flux_analysis/test_variability.py ...FFFF                     [ 49%]
tests/test_flux_analysis/test_deletion.py sss                            [ 49%]
tests/test_flux_analysis/test_moma.py s                                  [ 50%]
tests/test_flux_analysis/test_deletion.py .F.FFF                         [ 51%]
tests/test_flux_analysis/test_gapfilling.py .                            [ 51%]
tests/test_flux_analysis/test_helpers.py ...                             [ 51%]
tests/test_flux_analysis/test_loopless.py .....                          [ 52%]
tests/test_flux_analysis/test_phenotype_phase_plane.py ...FFF            [ 53%]
tests/test_flux_analysis/test_variability.py .F.FFFF                     [ 55%]
tests/test_io/test_annotation.py ..                                      [ 55%]
tests/test_io/test_annotation_format.py ..                               [ 55%]
tests/test_io/test_io_order.py ...........................               [ 60%]
tests/test_io/test_json.py ....                                          [ 61%]
tests/test_io/test_mat.py ...............                                [ 64%]
tests/test_io/test_notes.py .                                            [ 64%]
tests/test_io/test_pickle.py ..                                          [ 64%]
tests/test_io/test_sbml.py .ssss............xxxx.x.x..s...........       [ 71%]
tests/test_io/test_yaml.py .x                                            [ 72%]
tests/test_io/test_web/test_load.py ..ssss.                              [ 73%]
tests/test_manipulation/test_annotate.py .                               [ 73%]
tests/test_manipulation/test_delete.py .......                           [ 75%]
tests/test_manipulation/test_modify.py ...                               [ 75%]
tests/test_manipulation/test_validate.py ..                              [ 75%]
tests/test_medium/test_boundary_types.py .........                       [ 77%]
tests/test_medium/test_minimal_medium.py ..........                      [ 79%]
tests/test_sampling/test_achr.py FEEEEE                                  [ 80%]
tests/test_sampling/test_optgp.py FEEEEE                                 [ 81%]
tests/test_sampling/test_sampling.py FFF.FFFFFF                          [ 83%]
tests/test_summary/test_metabolite_summary.py F............F...          [ 86%]
tests/test_summary/test_model_summary.py F............F.                 [ 89%]
tests/test_summary/test_reaction_summary.py ....................         [ 92%]
tests/test_util/test_array.py ..                                         [ 93%]
tests/test_util/test_context.py ...                                      [ 93%]
tests/test_util/test_process_pool.py FFFFFFFFFFFFFFF                     [ 96%]
tests/test_util/test_solver.py ..............s                           [ 99%]
tests/test_util/test_util.py ...x                                        [100%]

==================================== ERRORS ====================================
_________________ ERROR at setup of test_achr_sample_benchmark _________________

model = <Model e_coli_core at 0xa6166d48>

    @pytest.fixture(scope="function")
    def achr(model: "Model") -> ACHRSampler:
        """Return ACHRSampler instance for tests."""
>       sampler = ACHRSampler(model, thinning=1)

tests/test_sampling/conftest.py:17: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa779add8>, size = 110592

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_________________ ERROR at setup of test_validate_wrong_sample _________________

model = <Model e_coli_core at 0xa5d7b7a8>

    @pytest.fixture(scope="function")
    def achr(model: "Model") -> ACHRSampler:
        """Return ACHRSampler instance for tests."""
>       sampler = ACHRSampler(model, thinning=1)

tests/test_sampling/conftest.py:17: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa7d72c88>, size = 110592

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_______________________ ERROR at setup of test_sampling ________________________

model = <Model e_coli_core at 0xa8ad8ce8>

    @pytest.fixture(scope="function")
    def achr(model: "Model") -> ACHRSampler:
        """Return ACHRSampler instance for tests."""
>       sampler = ACHRSampler(model, thinning=1)

tests/test_sampling/conftest.py:17: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa484b5f8>, size = 110592

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
____________________ ERROR at setup of test_batch_sampling _____________________

model = <Model e_coli_core at 0xa484b760>

    @pytest.fixture(scope="function")
    def achr(model: "Model") -> ACHRSampler:
        """Return ACHRSampler instance for tests."""
>       sampler = ACHRSampler(model, thinning=1)

tests/test_sampling/conftest.py:17: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa6fdf5c8>, size = 110592

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
___________________ ERROR at setup of test_variables_samples ___________________

model = <Model e_coli_core at 0xa4bcdd78>

    @pytest.fixture(scope="function")
    def achr(model: "Model") -> ACHRSampler:
        """Return ACHRSampler instance for tests."""
>       sampler = ACHRSampler(model, thinning=1)

tests/test_sampling/conftest.py:17: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa4bf09a0>, size = 131072

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
________________ ERROR at setup of test_optgp_sample_benchmark _________________

model = <Model e_coli_core at 0xa7d7c598>

    @pytest.fixture(scope="function")
    def optgp(model: "Model") -> OptGPSampler:
        """Return OptGPSampler instance for tests."""
>       sampler = OptGPSampler(model, processes=1, thinning=1)

tests/test_sampling/test_optgp.py:20: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xaaafcb50>, size = 524288

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_______________________ ERROR at setup of test_sampling ________________________

model = <Model e_coli_core at 0xa7c0e910>

    @pytest.fixture(scope="function")
    def optgp(model: "Model") -> OptGPSampler:
        """Return OptGPSampler instance for tests."""
>       sampler = OptGPSampler(model, processes=1, thinning=1)

tests/test_sampling/test_optgp.py:20: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa4bf07a8>, size = 1048576

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
____________________ ERROR at setup of test_batch_sampling _____________________

model = <Model e_coli_core at 0xa8346778>

    @pytest.fixture(scope="function")
    def optgp(model: "Model") -> OptGPSampler:
        """Return OptGPSampler instance for tests."""
>       sampler = OptGPSampler(model, processes=1, thinning=1)

tests/test_sampling/test_optgp.py:20: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xaabb22b0>, size = 2097152

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
___________________ ERROR at setup of test_variables_samples ___________________

model = <Model e_coli_core at 0xa5325ca0>

    @pytest.fixture(scope="function")
    def achr(model: "Model") -> ACHRSampler:
        """Return ACHRSampler instance for tests."""
>       sampler = ACHRSampler(model, thinning=1)

tests/test_sampling/conftest.py:17: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa54b8d18>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_______________________ ERROR at setup of test_reproject _______________________

model = <Model e_coli_core at 0xa551c100>

    @pytest.fixture(scope="function")
    def optgp(model: "Model") -> OptGPSampler:
        """Return OptGPSampler instance for tests."""
>       sampler = OptGPSampler(model, processes=1, thinning=1)

tests/test_sampling/test_optgp.py:20: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa53b6d18>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
=================================== FAILURES ===================================
________________ test_single_gene_deletion_fba_benchmark[glpk] _________________

model = <Model e_coli_core at 0xa974eee0>
benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0xa92f18e0>
all_solvers = 'glpk'

    def test_single_gene_deletion_fba_benchmark(
        model: Model, benchmark: Callable, all_solvers: List[str]
    ) -> None:
        """Benchmark single gene deletion using FBA."""
        model.solver = all_solvers
>       benchmark(single_gene_deletion, model)

tests/test_flux_analysis/test_deletion.py:28: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:126: in __call__
    return self._raw(function_to_benchmark, *args, **kwargs)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:148: in _raw
    duration, iterations, loops_range = self._calibrate_timer(runner)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:276: in _calibrate_timer
    duration = runner(loops_range)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:91: in runner
    function_to_benchmark(*args, **kwargs)
cobra/flux_analysis/deletion.py:393: in single_gene_deletion
    return _multi_deletion(
cobra/flux_analysis/deletion.py:232: in _multi_deletion
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
________________ test_fastcc_against_fva_nonblocked_rxns[glpk] _________________

model = <Model e_coli_core at 0xa5d1d118>, all_solvers = 'glpk'

    def test_fastcc_against_fva_nonblocked_rxns(
        model: Model, all_solvers: List[str]
    ) -> None:
        """Test non-blocked reactions obtained by FASTCC against FVA."""
        model.solver = all_solvers
        fastcc_consistent_model = fastcc(model)
>       fva = flux_variability_analysis(model, fraction_of_optimum=0.0)

tests/test_flux_analysis/test_fastcc.py:111: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_____________________ test_parallel_flux_variability[glpk] _____________________

model = <Model e_coli_core at 0xa9874dc0>
fva_results =         minimum  maximum
ACALD   0.00000  0.00000
ACALDt  0.00000  0.00000
ACKr    0.00000  0.00000
ACONTa  6.00725  6...2    0.00000 -0.00000
TKT1    1.49698  1.49698
TKT2    1.18150  1.18150
TPI     7.47738  7.47738

[95 rows x 2 columns]
all_solvers = 'glpk'

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_parallel_flux_variability(
        model: Model, fva_results: pd.DataFrame, all_solvers: List[str]
    ) -> None:
        """Test parallel FVA."""
        model.solver = all_solvers
>       fva_out = flux_variability_analysis(model, processes=2)

tests/test_flux_analysis/test_variability.py:94: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
________________ test_flux_variability_loopless_benchmark[glpk] ________________

model = <Model e_coli_core at 0xa984d508>
benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0xab095ac0>
all_solvers = 'glpk'

    def test_flux_variability_loopless_benchmark(
        model: Model, benchmark: Callable, all_solvers: List[str]
    ) -> None:
        """Benchmark loopless FVA."""
        model.solver = all_solvers
>       benchmark(
            flux_variability_analysis,
            model,
            loopless=True,
            reaction_list=model.reactions[1::3],
        )

tests/test_flux_analysis/test_variability.py:105: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:126: in __call__
    return self._raw(function_to_benchmark, *args, **kwargs)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:148: in _raw
    duration, iterations, loops_range = self._calibrate_timer(runner)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:276: in _calibrate_timer
    duration = runner(loops_range)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:91: in runner
    function_to_benchmark(*args, **kwargs)
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_____________________ test_flux_variability_loopless[glpk] _____________________

model = <Model e_coli_core at 0xaac720a0>, all_solvers = 'glpk'

    def test_flux_variability_loopless(model: Model, all_solvers: List[str]) -> None:
        """Test loopless FVA."""
        model.solver = all_solvers
        loop_reactions = [model.reactions.get_by_id(rid) for rid in ("FRD7", "SUCDi")]
>       fva_normal = flux_variability_analysis(model, reaction_list=loop_reactions)

tests/test_flux_analysis/test_variability.py:117: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
______________________ test_find_blocked_reactions[glpk] _______________________

model = <Model e_coli_core at 0xaae6c7a8>, all_solvers = 'glpk'

    def test_find_blocked_reactions(model: Model, all_solvers: List[str]) -> None:
        """Test find_blocked_reactions()."""
        model.solver = all_solvers
>       result = find_blocked_reactions(model, model.reactions[40:46])

tests/test_flux_analysis/test_variability.py:201: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:319: in find_blocked_reactions
    flux_span = flux_variability_analysis(
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
__________________________ test_double_gene_deletion ___________________________

model = <Model e_coli_core at 0xa5de6928>

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_double_gene_deletion(model: Model) -> None:
        """Test double gene deletion."""
        genes = [
            "b0726",
            "b4025",
            "b0724",
            "b0720",
            "b2935",
            "b2935",
            "b1276",
            "b1241",
        ]
        growth_dict = {
            "b0720": {
                "b0720": 0.0,
                "b0724": 0.0,
                "b0726": 0.0,
                "b1241": 0.0,
                "b1276": 0.0,
                "b2935": 0.0,
                "b4025": 0.0,
            },
            "b0724": {
                "b0720": 0.0,
                "b0724": 0.814,
                "b0726": 0.814,
                "b1241": 0.814,
                "b1276": 0.814,
                "b2935": 0.814,
                "b4025": 0.739,
            },
            "b0726": {
                "b0720": 0.0,
                "b0724": 0.814,
                "b0726": 0.858,
                "b1241": 0.858,
                "b1276": 0.858,
                "b2935": 0.858,
                "b4025": 0.857,
            },
            "b1241": {
                "b0720": 0.0,
                "b0724": 0.814,
                "b0726": 0.858,
                "b1241": 0.874,
                "b1276": 0.874,
                "b2935": 0.874,
                "b4025": 0.863,
            },
            "b1276": {
                "b0720": 0.0,
                "b0724": 0.814,
                "b0726": 0.858,
                "b1241": 0.874,
                "b1276": 0.874,
                "b2935": 0.874,
                "b4025": 0.863,
            },
            "b2935": {
                "b0720": 0.0,
                "b0724": 0.814,
                "b0726": 0.858,
                "b1241": 0.874,
                "b1276": 0.874,
                "b2935": 0.874,
                "b4025": 0.863,
            },
            "b4025": {
                "b0720": 0.0,
                "b0724": 0.739,
                "b0726": 0.857,
                "b1241": 0.863,
                "b1276": 0.863,
                "b2935": 0.863,
                "b4025": 0.863,
            },
        }
>       solution = double_gene_deletion(model, gene_list1=genes, processes=3)

tests/test_flux_analysis/test_deletion.py:370: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/deletion.py:519: in double_gene_deletion
    return _multi_deletion(
cobra/flux_analysis/deletion.py:232: in _multi_deletion
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
___________________ test_double_reaction_deletion_benchmark ____________________

large_model = <Model iJO1366 at 0xa8b98778>
benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0xa91a43e8>

    def test_double_reaction_deletion_benchmark(
        large_model: Model, benchmark: Callable
    ) -> None:
        """Benchmark double reaction deletion."""
        reactions = large_model.reactions[1::100]
>       benchmark(double_reaction_deletion, large_model, reaction_list1=reactions)

tests/test_flux_analysis/test_deletion.py:414: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:126: in __call__
    return self._raw(function_to_benchmark, *args, **kwargs)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:148: in _raw
    duration, iterations, loops_range = self._calibrate_timer(runner)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:276: in _calibrate_timer
    duration = runner(loops_range)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:91: in runner
    function_to_benchmark(*args, **kwargs)
cobra/flux_analysis/deletion.py:457: in double_reaction_deletion
    return _multi_deletion(
cobra/flux_analysis/deletion.py:232: in _multi_deletion
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
________________________ test_double_reaction_deletion _________________________

model = <Model e_coli_core at 0xaa36a508>

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_double_reaction_deletion(model: Model) -> None:
        """Test double reaction deletion."""
        reactions = ["FBA", "ATPS4r", "ENO", "FRUpts2"]
        growth_dict = {
            "FBA": {"ATPS4r": 0.135, "ENO": float("nan"), "FRUpts2": 0.704},
            "ATPS4r": {"ENO": float("nan"), "FRUpts2": 0.374},
            "ENO": {"FRUpts2": 0.0},
        }
    
>       solution = double_reaction_deletion(model, reaction_list1=reactions, processes=3)

tests/test_flux_analysis/test_deletion.py:427: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/deletion.py:457: in double_reaction_deletion
    return _multi_deletion(
cobra/flux_analysis/deletion.py:232: in _multi_deletion
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
____________________________ test_deletion_accessor ____________________________

small_model = <Model e_coli_core at 0xab581790>

    def test_deletion_accessor(small_model: Model) -> None:
        """Test the DataFrame accessor."""
>       single = single_reaction_deletion(small_model, small_model.reactions[0:10])

tests/test_flux_analysis/test_deletion.py:445: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/deletion.py:338: in single_reaction_deletion
    return _multi_deletion(
cobra/flux_analysis/deletion.py:232: in _multi_deletion
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_________________ test_multi_variable_envelope[variables1-20] __________________

model = <Model e_coli_core at 0xaa3bc9d0>
variables = ['EX_glc__D_e', 'EX_o2_e'], num = 20

    @pytest.mark.parametrize(
        "variables, num",
        [
            (["EX_glc__D_e"], 30),
            (["EX_glc__D_e", "EX_o2_e"], 20),
            (["EX_glc__D_e", "EX_o2_e", "EX_ac_e"], 10),
        ],
    )
    def test_multi_variable_envelope(model: Model, variables: str, num: int) -> None:
        """Test production of envelope (multiple variable)."""
>       df = production_envelope(model, variables, points=num)

tests/test_flux_analysis/test_phenotype_phase_plane.py:33: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/phenotype_phase_plane.py:140: in production_envelope
    min_max = fva(model, reactions, fraction_of_optimum=0)
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_________________ test_multi_variable_envelope[variables2-10] __________________

model = <Model e_coli_core at 0xa5f55ee0>
variables = ['EX_glc__D_e', 'EX_o2_e', 'EX_ac_e'], num = 10

    @pytest.mark.parametrize(
        "variables, num",
        [
            (["EX_glc__D_e"], 30),
            (["EX_glc__D_e", "EX_o2_e"], 20),
            (["EX_glc__D_e", "EX_o2_e", "EX_ac_e"], 10),
        ],
    )
    def test_multi_variable_envelope(model: Model, variables: str, num: int) -> None:
        """Test production of envelope (multiple variable)."""
>       df = production_envelope(model, variables, points=num)

tests/test_flux_analysis/test_phenotype_phase_plane.py:33: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/phenotype_phase_plane.py:140: in production_envelope
    min_max = fva(model, reactions, fraction_of_optimum=0)
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
______________________________ test_envelope_two _______________________________

model = <Model e_coli_core at 0xa93052c8>

    def test_envelope_two(model: Model) -> None:
        """Test production of envelope."""
>       df = production_envelope(model, ["EX_glc__D_e", "EX_o2_e"], objective="EX_ac_e")

tests/test_flux_analysis/test_phenotype_phase_plane.py:39: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/phenotype_phase_plane.py:140: in production_envelope
    min_max = fva(model, reactions, fraction_of_optimum=0)
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_____________________________ test_fva_data_frame ______________________________

model = <Model e_coli_core at 0xaa381ee0>

    def test_fva_data_frame(model: Model) -> None:
        """Test DataFrame obtained from FVA."""
>       df = flux_variability_analysis(model)

tests/test_flux_analysis/test_variability.py:129: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
____________________________ test_fva_minimization _____________________________

model = <Model e_coli_core at 0xaab1cb68>

    def test_fva_minimization(model: Model) -> None:
        """Test minimization using FVA."""
        model.objective = model.reactions.EX_glc__D_e
        model.objective_direction = "min"
>       solution = flux_variability_analysis(model, fraction_of_optimum=0.95)

tests/test_flux_analysis/test_variability.py:146: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
___________________ test_find_blocked_reactions_solver_none ____________________

model = <Model e_coli_core at 0xa974ea60>

    def test_find_blocked_reactions_solver_none(model: Model) -> None:
        """Test find_blocked_reactions() [no specific solver]."""
>       result = find_blocked_reactions(model, model.reactions[40:46])

tests/test_flux_analysis/test_variability.py:153: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:319: in find_blocked_reactions
    flux_span = flux_variability_analysis(
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_____________________________ test_essential_genes _____________________________

model = <Model e_coli_core at 0xa7508b68>

    def test_essential_genes(model: Model) -> None:
        """Test find_essential_genes()."""
        essential_genes = {
            "b2779",
            "b1779",
            "b0720",
            "b2416",
            "b2926",
            "b1136",
            "b2415",
        }
>       observed_essential_genes = {g.id for g in find_essential_genes(model)}

tests/test_flux_analysis/test_variability.py:168: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:360: in find_essential_genes
    deletions = single_gene_deletion(model, method="fba", processes=processes)
cobra/flux_analysis/deletion.py:393: in single_gene_deletion
    return _multi_deletion(
cobra/flux_analysis/deletion.py:232: in _multi_deletion
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
___________________________ test_essential_reactions ___________________________

model = <Model e_coli_core at 0xa927fe50>

    def test_essential_reactions(model: Model) -> None:
        """Test find_blocked_reactions()."""
        essential_reactions = {
            "GLNS",
            "Biomass_Ecoli_core",
            "PIt2r",
            "GAPD",
            "ACONTb",
            "EX_nh4_e",
            "ENO",
            "EX_h_e",
            "EX_glc__D_e",
            "ICDHyr",
            "CS",
            "NH4t",
            "GLCpts",
            "PGM",
            "EX_pi_e",
            "PGK",
            "RPI",
            "ACONTa",
        }
>       observed_essential_reactions = {r.id for r in find_essential_reactions(model)}

tests/test_flux_analysis/test_variability.py:194: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/flux_analysis/variability.py:400: in find_essential_reactions
    deletions = single_reaction_deletion(model, method="fba", processes=processes)
cobra/flux_analysis/deletion.py:338: in single_reaction_deletion
    return _multi_deletion(
cobra/flux_analysis/deletion.py:232: in _multi_deletion
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
___________________________ test_achr_init_benchmark ___________________________

model = <Model e_coli_core at 0xa55562f8>
benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0xab493550>

    def test_achr_init_benchmark(model: "Model", benchmark: Callable) -> None:
        """Benchmark inital ACHR sampling."""
>       benchmark(lambda: ACHRSampler(model))

tests/test_sampling/test_achr.py:17: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:126: in __call__
    return self._raw(function_to_benchmark, *args, **kwargs)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:148: in _raw
    duration, iterations, loops_range = self._calibrate_timer(runner)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:276: in _calibrate_timer
    duration = runner(loops_range)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:91: in runner
    function_to_benchmark(*args, **kwargs)
tests/test_sampling/test_achr.py:17: in <lambda>
    benchmark(lambda: ACHRSampler(model))
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa6de2e80>, size = 110592

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
__________________________ test_optgp_init_benchmark ___________________________

model = <Model e_coli_core at 0xa6d4c400>
benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0xa6d2dd60>

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_optgp_init_benchmark(model: "Model", benchmark: Callable) -> None:
        """Benchmark inital OptGP sampling."""
>       benchmark(lambda: OptGPSampler(model, processes=2))

tests/test_sampling/test_optgp.py:30: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:126: in __call__
    return self._raw(function_to_benchmark, *args, **kwargs)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:148: in _raw
    duration, iterations, loops_range = self._calibrate_timer(runner)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:276: in _calibrate_timer
    duration = runner(loops_range)
/usr/lib/python3/dist-packages/pytest_benchmark/fixture.py:91: in runner
    function_to_benchmark(*args, **kwargs)
tests/test_sampling/test_optgp.py:30: in <lambda>
    benchmark(lambda: OptGPSampler(model, processes=2))
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa6d4c5b0>, size = 262144

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_______________________________ test_single_achr _______________________________

model = <Model e_coli_core at 0xa56bb448>

    def test_single_achr(model: Model) -> None:
        """Test ACHR sampling (one sample)."""
>       s = sample(model, 10, method="achr")

tests/test_sampling/test_sampling.py:15: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:87: in sample
    sampler = ACHRSampler(model, thinning=thinning, seed=seed)
cobra/sampling/achr.py:100: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, **kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xaaaaf3e8>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
______________________________ test_single_optgp _______________________________

model = <Model e_coli_core at 0xa66fb508>

    def test_single_optgp(model: Model) -> None:
        """Test OptGP sampling (one sample)."""
>       s = sample(model, 10, processes=1)

tests/test_sampling/test_sampling.py:21: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:85: in sample
    sampler = OptGPSampler(model, processes=processes, thinning=thinning, seed=seed)
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa97d11c0>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_______________________________ test_multi_optgp _______________________________

model = <Model e_coli_core at 0xa5d6fa78>

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_multi_optgp(model: Model) -> None:  # pragma: no cover
        """Test OptGP sampling (multi sample)."""
>       s = sample(model, 10, processes=2)

tests/test_sampling/test_sampling.py:28: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:85: in sample
    sampler = OptGPSampler(model, processes=processes, thinning=thinning, seed=seed)
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa93b3c10>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_______________________________ test_fixed_seed ________________________________

model = <Model e_coli_core at 0xa779ab80>

    def test_fixed_seed(model: Model) -> None:
        """Test result of fixed seed for sampling."""
>       s1 = sample(model, 1, seed=42)

tests/test_sampling/test_sampling.py:40: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:85: in sample
    sampler = OptGPSampler(model, processes=processes, thinning=thinning, seed=seed)
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xab4e2dd8>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
___________________________ test_equality_constraint ___________________________

model = <Model e_coli_core at 0xaa428640>

    def test_equality_constraint(model: Model) -> None:
        """Test equality constraint."""
        model.reactions.ACALD.bounds = (-1.5, -1.5)
    
>       s = sample(model, 10)

tests/test_sampling/test_sampling.py:49: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:85: in sample
    sampler = OptGPSampler(model, processes=processes, thinning=thinning, seed=seed)
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa944a2c8>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
__________________________ test_inequality_constraint __________________________

model = <Model e_coli_core at 0xa554b418>

    def test_inequality_constraint(model: Model) -> None:
        """Test inequality constraint."""
        co = model.problem.Constraint(model.reactions.ACALD.flux_expression, lb=-0.5)
        model.add_cons_vars(co)
    
>       s = sample(model, 10)

tests/test_sampling/test_sampling.py:61: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:85: in sample
    sampler = OptGPSampler(model, processes=processes, thinning=thinning, seed=seed)
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa6e61fe8>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
__________________________ test_inhomogeneous_sanity ___________________________

model = <Model e_coli_core at 0xa72ebcb8>

    def test_inhomogeneous_sanity(model: Model) -> None:
        """Test standard deviation between inhomogeneous and homogeneous sampling."""
        model.reactions.ACALD.bounds = (-1.5, -1.5)
>       s_inhom = sample(model, 64)

tests/test_sampling/test_sampling.py:71: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:85: in sample
    sampler = OptGPSampler(model, processes=processes, thinning=thinning, seed=seed)
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa531e358>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
____________________________ test_complicated_model ____________________________

    def test_complicated_model() -> None:
        """Test a complicated model.
    
        Difficult model since the online mean calculation is numerically
        unstable, so many samples weakly violate the equality constraints.
    
        """
        model = Model("flux_split")
    
        reaction1 = Reaction("V1")
        reaction2 = Reaction("V2")
        reaction3 = Reaction("V3")
        reaction1.bounds = (0, 6)
        reaction2.bounds = (0, 8)
        reaction3.bounds = (0, 10)
    
        A = Metabolite("A")
    
        reaction1.add_metabolites({A: -1})
        reaction2.add_metabolites({A: -1})
        reaction3.add_metabolites({A: 1})
    
        model.add_reactions([reaction1, reaction2, reaction3])
    
>       optgp = OptGPSampler(model, 1, seed=42)

tests/test_sampling/test_sampling.py:113: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa98c6670>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
___________________________ test_single_point_space ____________________________

model = <Model e_coli_core at 0xa9157a60>

    def test_single_point_space(model: Model) -> None:
        """Test the reduction of the sampling space to one point."""
        pfba_sol = pfba(model)
        pfba_const = model.problem.Constraint(
            sum(model.variables), ub=pfba_sol.objective_value
        )
        model.add_cons_vars(pfba_const)
        model.reactions.Biomass_Ecoli_core.lower_bound = pfba_sol.fluxes.Biomass_Ecoli_core
    
        with pytest.raises(ValueError):
>           sample(model, 1)

tests/test_sampling/test_sampling.py:137: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/sampling/sampling.py:85: in sample
    sampler = OptGPSampler(model, processes=processes, thinning=thinning, seed=seed)
cobra/sampling/optgp.py:116: in __init__
    super().__init__(model, thinning, nproj=nproj, seed=seed, *kwargs)
cobra/sampling/hr_sampler.py:210: in __init__
    self.problem = self.__build_problem()
cobra/sampling/hr_sampler.py:268: in __build_problem
    equalities=shared_np_array(equalities.shape, equalities),
cobra/sampling/hr_sampler.py:101: in shared_np_array
    array = Array(ctypes.c_double, int(size))
/usr/lib/python3.10/multiprocessing/context.py:141: in Array
    return Array(typecode_or_type, size_or_initializer, lock=lock,
/usr/lib/python3.10/multiprocessing/sharedctypes.py:88: in Array
    obj = RawArray(typecode_or_type, size_or_initializer)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:61: in RawArray
    obj = _new_value(type_)
/usr/lib/python3.10/multiprocessing/sharedctypes.py:41: in _new_value
    wrapper = heap.BufferWrapper(size)
/usr/lib/python3.10/multiprocessing/heap.py:331: in __init__
    block = BufferWrapper._heap.malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:309: in malloc
    (arena, start, stop) = self._malloc(size)
/usr/lib/python3.10/multiprocessing/heap.py:192: in _malloc
    return self._new_arena(size)
/usr/lib/python3.10/multiprocessing/heap.py:166: in _new_arena
    arena = Arena(length)
/usr/lib/python3.10/multiprocessing/heap.py:85: in __init__
    dir=self._choose_dir(size))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <multiprocessing.heap.Arena object at 0xa5602af0>, size = 4194304

    def _choose_dir(self, size):
        # Choose a non-storage backed directory if possible,
        # to improve performance
        for d in self._dir_candidates:
>           st = os.statvfs(d)
E           FileNotFoundError: [Errno 2] No such file or directory: '/dev/shm'

/usr/lib/python3.10/multiprocessing/heap.py:95: FileNotFoundError
_______________ test_metabolite_summary_interface[optlang-glpk] ________________

model = <Model e_coli_core at 0xa53d8028>, opt_solver = 'optlang-glpk'

    def test_metabolite_summary_interface(model, opt_solver):
        """Test that a summary can be created successfully."""
        model.solver = opt_solver
        metabolite = model.metabolites.get_by_id("q8_c")
        MetaboliteSummary(
            metabolite=metabolite,
            model=model,
        )
        MetaboliteSummary(
            metabolite=metabolite,
            model=model,
            solution=pfba(model),
        )
>       MetaboliteSummary(
            metabolite=metabolite,
            model=model,
            fva=0.95,
        )

tests/test_summary/test_metabolite_summary.py:23: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/summary/metabolite_summary.py:88: in __init__
    self._generate(model, solution, fva)
cobra/summary/metabolite_summary.py:122: in _generate
    fva = flux_variability_analysis(
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
__________________ test_fdp_production_with_fva[optlang-glpk] __________________

model = <Model e_coli_core at 0xa4bfe100>, opt_solver = 'optlang-glpk'

    def test_fdp_production_with_fva(model, opt_solver):
        """Test that the production summary of fdp is within expected bounds."""
        model.solver = opt_solver
>       summary = model.metabolites.get_by_id("fdp_c").summary(fva=0.99)

tests/test_summary/test_metabolite_summary.py:101: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/core/metabolite.py:310: in summary
    return MetaboliteSummary(
cobra/summary/metabolite_summary.py:88: in __init__
    self._generate(model, solution, fva)
cobra/summary/metabolite_summary.py:122: in _generate
    fva = flux_variability_analysis(
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
__________________ test_model_summary_interface[optlang-glpk] __________________

model = <Model e_coli_core at 0xa54a6ee0>, opt_solver = 'optlang-glpk'

    def test_model_summary_interface(model, opt_solver):
        """Test that a summary can be created successfully."""
        model.solver = opt_solver
        ModelSummary(
            model=model,
        )
        ModelSummary(
            model=model,
            solution=pfba(model),
        )
>       ModelSummary(
            model=model,
            fva=0.95,
        )

tests/test_summary/test_model_summary.py:20: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/summary/model_summary.py:85: in __init__
    self._generate(model, solution, fva)
cobra/summary/model_summary.py:120: in _generate
    fva = flux_variability_analysis(
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_____________________ test_model_summary_fva[optlang-glpk] _____________________

model = <Model e_coli_core at 0xaa598f58>, opt_solver = 'optlang-glpk'

    def test_model_summary_fva(model, opt_solver):
        """Test that the exchange summary is within expected bounds."""
        model.solver = opt_solver
>       summary = model.summary(fva=0.95)

tests/test_summary/test_model_summary.py:89: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/core/model.py:1390: in summary
    return ModelSummary(model=self, solution=solution, fva=fva)
cobra/summary/model_summary.py:85: in __init__
    self._generate(model, solution, fva)
cobra/summary/model_summary.py:120: in _generate
    fva = flux_variability_analysis(
cobra/flux_analysis/variability.py:239: in flux_variability_analysis
    with ProcessPool(
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
____________________________ test_init[attributes0] ____________________________

attributes = {}

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    @pytest.mark.parametrize(
        "attributes",
        [
            {},
            {"processes": 2},
            {"initializer": dummy_initializer},
            {"initializer": dummy_initializer, "initargs": (1, "2", [3], {"a": 4})},
            {"maxtasksperchild": 1},
        ],
    )
    def test_init(attributes: dict) -> None:
        """Test that a process pool can be initialized with each of its arguments."""
>       ProcessPool(**attributes)

tests/test_util/test_process_pool.py:41: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
____________________________ test_init[attributes1] ____________________________

attributes = {'processes': 2}

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    @pytest.mark.parametrize(
        "attributes",
        [
            {},
            {"processes": 2},
            {"initializer": dummy_initializer},
            {"initializer": dummy_initializer, "initargs": (1, "2", [3], {"a": 4})},
            {"maxtasksperchild": 1},
        ],
    )
    def test_init(attributes: dict) -> None:
        """Test that a process pool can be initialized with each of its arguments."""
>       ProcessPool(**attributes)

tests/test_util/test_process_pool.py:41: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
____________________________ test_init[attributes2] ____________________________

attributes = {'initializer': <function dummy_initializer at 0xab4f0418>}

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    @pytest.mark.parametrize(
        "attributes",
        [
            {},
            {"processes": 2},
            {"initializer": dummy_initializer},
            {"initializer": dummy_initializer, "initargs": (1, "2", [3], {"a": 4})},
            {"maxtasksperchild": 1},
        ],
    )
    def test_init(attributes: dict) -> None:
        """Test that a process pool can be initialized with each of its arguments."""
>       ProcessPool(**attributes)

tests/test_util/test_process_pool.py:41: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
____________________________ test_init[attributes3] ____________________________

attributes = {'initargs': (1, '2', [3], {'a': 4}), 'initializer': <function dummy_initializer at 0xab4f0418>}

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    @pytest.mark.parametrize(
        "attributes",
        [
            {},
            {"processes": 2},
            {"initializer": dummy_initializer},
            {"initializer": dummy_initializer, "initargs": (1, "2", [3], {"a": 4})},
            {"maxtasksperchild": 1},
        ],
    )
    def test_init(attributes: dict) -> None:
        """Test that a process pool can be initialized with each of its arguments."""
>       ProcessPool(**attributes)

tests/test_util/test_process_pool.py:41: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
____________________________ test_init[attributes4] ____________________________

attributes = {'maxtasksperchild': 1}

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    @pytest.mark.parametrize(
        "attributes",
        [
            {},
            {"processes": 2},
            {"initializer": dummy_initializer},
            {"initializer": dummy_initializer, "initargs": (1, "2", [3], {"a": 4})},
            {"maxtasksperchild": 1},
        ],
    )
    def test_init(attributes: dict) -> None:
        """Test that a process pool can be initialized with each of its arguments."""
>       ProcessPool(**attributes)

tests/test_util/test_process_pool.py:41: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
__________________________________ test_close __________________________________

mocker = <pytest_mock.plugin.MockerFixture object at 0xa73b0d60>

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_close(mocker: MockerFixture) -> None:
        """Test that the composed pool is closed as well."""
>       pool = ProcessPool(processes=3)

tests/test_util/test_process_pool.py:47: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
______________________________ test_with_context _______________________________

mocker = <pytest_mock.plugin.MockerFixture object at 0xa95431c0>

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_with_context(mocker: MockerFixture) -> None:
        """Test that the composed pool's context is managed as well."""
>       pool = ProcessPool(processes=3)

tests/test_util/test_process_pool.py:56: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
__________________________________ test_apply __________________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_apply() -> None:
        """Test that a function can be applied."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:67: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_______________________________ test_apply_async _______________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_apply_async() -> None:
        """Test that a function can be applied asynchronously."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:74: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
___________________________________ test_map ___________________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_map() -> None:
        """Test that a function can be mapped over an iterable of values."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:81: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
________________________________ test_map_async ________________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_map_async() -> None:
        """Test that a function can be mapped over an iterable of values asynchronously."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:88: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
__________________________________ test_imap ___________________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_imap() -> None:
        """Test that mapped function results can be iterated."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:95: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_____________________________ test_imap_unordered ______________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_imap_unordered() -> None:
        """Test that mapped function results can be iterated in any order."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:105: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
_________________________________ test_starmap _________________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_starmap() -> None:
        """Test that a function can be starmapped over many iterables."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:112: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
______________________________ test_starmap_async ______________________________

    @pytest.mark.skipif("SKIP_MP" in os.environ, reason="unsafe for parallel execution")
    def test_starmap_async() -> None:
        """Test that a function can be starmapped over many iterables asynchronously."""
>       with ProcessPool(processes=3) as pool:

tests/test_util/test_process_pool.py:119: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
cobra/util/process_pool.py:59: in __init__
    self._pool = multiprocessing.Pool(
/usr/lib/python3.10/multiprocessing/context.py:119: in Pool
    return Pool(processes, initializer, initargs, maxtasksperchild,
/usr/lib/python3.10/multiprocessing/pool.py:191: in __init__
    self._setup_queues()
/usr/lib/python3.10/multiprocessing/pool.py:346: in _setup_queues
    self._inqueue = self._ctx.SimpleQueue()
/usr/lib/python3.10/multiprocessing/context.py:113: in SimpleQueue
    return SimpleQueue(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/queues.py:341: in __init__
    self._rlock = ctx.Lock()
/usr/lib/python3.10/multiprocessing/context.py:68: in Lock
    return Lock(ctx=self.get_context())
/usr/lib/python3.10/multiprocessing/synchronize.py:162: in __init__
    SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <Lock(owner=unknown)>, kind = 1, value = 1, maxvalue = 1

    def __init__(self, kind, value, maxvalue, *, ctx):
        if ctx is None:
            ctx = context._default_context.get_context()
        name = ctx.get_start_method()
        unlink_now = sys.platform == 'win32' or name == 'fork'
        for i in range(100):
            try:
>               sl = self._semlock = _multiprocessing.SemLock(
                    kind, value, maxvalue, self._make_name(),
                    unlink_now)
E                   FileNotFoundError: [Errno 2] No such file or directory

/usr/lib/python3.10/multiprocessing/synchronize.py:57: FileNotFoundError
=============================== warnings summary ===============================
cobra/io/dict.py:71
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/dict.py:71: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    value: Union[str, np.float, np.bool, Set, Dict]

cobra/io/dict.py:71
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/dict.py:71: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    value: Union[str, np.float, np.bool, Set, Dict]

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7]
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9]
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'.
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_model.py::test_reaction_delete
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_model.py::test_reaction_delete
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead
    warn(

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements
.pybuild/cpython3_3.10_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list
    warn("need to pass in a list")

.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_model.py::test_change_objective
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_model.py::test_change_objective
.pybuild/cpython3_3.10_cobra/build/tests/test_core/test_model.py::test_change_objective
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead.
    warn("Please use reaction.flux instead.", DeprecationWarning)

.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_io_order.py: 1458 warnings
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_json.py: 350 warnings
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_yaml.py: 107 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/dict.py:89: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here.
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    if isinstance(value, np.float):

.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_io_order.py: 1098 warnings
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_json.py: 216 warnings
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_yaml.py: 69 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/io/dict.py:91: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    if isinstance(value, np.bool):

.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_json.py: 1 warning
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_mat.py: 5 warnings
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_pickle.py: 1 warning
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_sbml.py: 9 warnings
.pybuild/cpython3_3.10_cobra/build/tests/test_io/test_yaml.py: 1 warning
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'.
    warn(f"Solver status is '{status}'.", UserWarning)

.pybuild/cpython3_3.10_cobra/build/tests/test_medium/test_minimal_medium.py: 26 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build/cobra/medium/minimal_medium.py:112: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning.
    medium = pd.Series()

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html


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---------------------------------------------------------------------------------------------------------------------------- benchmark: 24 tests ----------------------------------------------------------------------------------------------------------------------------
Name (time in us)                                                     Min                        Max                       Mean                    StdDev                     Median                       IQR            Outliers          OPS            Rounds  Iterations
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[cplex]                         92.0026 (1.0)             146.3378 (1.02)             98.0951 (1.00)             6.8852 (1.0)              96.8357 (1.01)             3.0007 (1.0)         17;22  10,194.1865 (1.00)        310           1
test_subtract_metabolite_benchmark[gurobi]                        92.3360 (1.00)            143.3371 (1.0)              97.8181 (1.0)              7.0402 (1.02)             96.0035 (1.0)              3.0007 (1.0)         15;18  10,223.0591 (1.0)         309           1
test_subtract_metabolite_benchmark[glpk]                          92.6703 (1.01)          1,090.6961 (7.61)            103.3602 (1.06)            56.0550 (8.14)             98.3356 (1.02)             3.9991 (1.33)         2;22   9,674.9061 (0.95)        319           1
test_change_objective_benchmark[optlang-glpk]                  5,140.4713 (55.87)        12,981.3487 (90.57)         5,268.2770 (53.86)          435.5220 (63.25)         5,239.1412 (54.57)           71.3347 (23.77)         1;4     189.8154 (0.02)        320           1
test_loopless_benchmark_after                                 24,334.6579 (264.50)       24,932.6751 (173.94)       24,583.6492 (251.32)         179.1534 (26.02)        24,543.9969 (255.66)         288.7570 (96.23)         9;0      40.6774 (0.00)         21           1
test_loopless_benchmark_before                               109,066.2843 (>1000.0)     109,870.3062 (766.52)      109,546.9639 (>1000.0)        305.2946 (44.34)       109,655.6345 (>1000.0)        478.0127 (159.30)        2;0       9.1285 (0.00)          7           1
test_minimal_medium_mip_benchmark                            121,533.5922 (>1000.0)     122,980.9644 (857.98)      122,135.7750 (>1000.0)        494.7065 (71.85)       122,160.7751 (>1000.0)        452.6787 (150.86)        2;1       8.1876 (0.00)          6           1
test_minimal_medium_linear_benchmark                         123,647.9823 (>1000.0)     124,132.9955 (866.02)      123,946.1904 (>1000.0)        205.3884 (29.83)       124,050.6601 (>1000.0)        316.7584 (105.56)        1;0       8.0680 (0.00)          5           1
test_single_reaction_deletion_benchmark[glpk]                273,528.3421 (>1000.0)     285,483.9964 (>1000.0)     279,063.8905 (>1000.0)      5,099.8590 (740.70)      276,509.4219 (>1000.0)      8,212.5526 (>1000.0)       2;0       3.5834 (0.00)          5           1
test_copy_benchmark[optlang-glpk]                            396,141.9975 (>1000.0)   2,034,569.4423 (>1000.0)     728,760.0199 (>1000.0)    730,023.2078 (>1000.0)     398,416.7268 (>1000.0)    424,940.7742 (>1000.0)       1;1       1.3722 (0.00)          5           1
test_deepcopy_benchmark                                      559,362.0380 (>1000.0)     575,322.4678 (>1000.0)     567,676.3283 (>1000.0)      6,521.6519 (947.20)      569,606.9812 (>1000.0)     10,529.5335 (>1000.0)       2;0       1.7616 (0.00)          5           1
test_gpr_equality_benchmark                                  585,160.7760 (>1000.0)     594,294.6896 (>1000.0)     588,700.0050 (>1000.0)      3,979.4953 (577.98)      587,351.8353 (>1000.0)      6,714.3480 (>1000.0)       1;0       1.6987 (0.00)          5           1
test_fastcc_benchmark[glpk]                                1,298,465.1811 (>1000.0)   1,325,154.5662 (>1000.0)   1,313,690.7239 (>1000.0)     12,287.8481 (>1000.0)   1,319,014.7318 (>1000.0)     22,085.2587 (>1000.0)       1;0       0.7612 (0.00)          5           1
test_add_metabolite_benchmark[cplex]                       1,747,652.8790 (>1000.0)   1,765,731.3645 (>1000.0)   1,752,341.8052 (>1000.0)      7,566.0551 (>1000.0)   1,749,082.2505 (>1000.0)      6,123.6641 (>1000.0)       1;1       0.5707 (0.00)          5           1
test_add_metabolite_benchmark[glpk]                        1,756,576.4571 (>1000.0)   1,765,362.3577 (>1000.0)   1,759,792.7427 (>1000.0)      3,572.4919 (518.87)    1,758,005.4952 (>1000.0)      4,865.2976 (>1000.0)       1;0       0.5682 (0.00)          5           1
test_add_metabolite_benchmark[gurobi]                      1,757,935.1524 (>1000.0)   1,820,136.4866 (>1000.0)   1,771,128.2382 (>1000.0)     27,413.8242 (>1000.0)   1,758,967.1789 (>1000.0)     17,245.8780 (>1000.0)       1;1       0.5646 (0.00)          5           1
test_double_gene_deletion_benchmark                        2,221,055.9798 (>1000.0)   2,286,875.4119 (>1000.0)   2,242,188.6781 (>1000.0)     27,500.7201 (>1000.0)   2,228,081.8187 (>1000.0)     35,955.8754 (>1000.0)       1;0       0.4460 (0.00)          5           1
test_single_gene_deletion_linear_moma_benchmark[glpk]      3,899,714.7614 (>1000.0)   3,931,007.9245 (>1000.0)   3,916,298.7413 (>1000.0)     11,442.2486 (>1000.0)   3,914,933.1776 (>1000.0)     13,147.4477 (>1000.0)       2;0       0.2553 (0.00)          5           1
test_gpr_symbolism_benchmark                               4,376,085.0579 (>1000.0)   5,560,983.9903 (>1000.0)   4,642,652.8888 (>1000.0)    513,899.8727 (>1000.0)   4,421,376.9073 (>1000.0)    316,326.4962 (>1000.0)       1;1       0.2154 (0.00)          5           1
test_pfba_benchmark[glpk]                                  5,461,471.0426 (>1000.0)   5,474,847.0578 (>1000.0)   5,470,118.3401 (>1000.0)      5,181.7791 (752.60)    5,471,343.3217 (>1000.0)      5,748.3353 (>1000.0)       1;0       0.1828 (0.00)          5           1
test_single_gene_deletion_linear_room_benchmark[glpk]      5,622,459.6091 (>1000.0)   8,010,770.0964 (>1000.0)   6,114,400.8314 (>1000.0)  1,060,235.8598 (>1000.0)   5,642,335.8209 (>1000.0)    624,776.3264 (>1000.0)       1;1       0.1635 (0.00)          5           1
test_geometric_fba_benchmark[glpk]                         6,578,329.1329 (>1000.0)   6,631,411.5711 (>1000.0)   6,595,956.7530 (>1000.0)     21,647.0963 (>1000.0)   6,584,539.3268 (>1000.0)     26,505.9224 (>1000.0)       1;0       0.1516 (0.00)          5           1
test_copy_benchmark_large_model[optlang-glpk]              8,398,731.5986 (>1000.0)  10,675,530.7568 (>1000.0)   9,263,648.7979 (>1000.0)  1,145,684.0817 (>1000.0)   8,463,775.0890 (>1000.0)  2,006,813.5210 (>1000.0)       1;0       0.1079 (0.00)          5           1
test_flux_variability_benchmark[glpk]                     42,152,727.5778 (>1000.0)  42,195,123.1370 (>1000.0)  42,168,359.8850 (>1000.0)     16,341.5952 (>1000.0)  42,161,616.2928 (>1000.0)     18,280.4263 (>1000.0)       1;0       0.0237 (0.00)          5           1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Legend:
  Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
  OPS: Operations Per Second, computed as 1 / Mean
=========================== short test summary info ============================
FAILED tests/test_flux_analysis/test_deletion.py::test_single_gene_deletion_fba_benchmark[glpk]
FAILED tests/test_flux_analysis/test_fastcc.py::test_fastcc_against_fva_nonblocked_rxns[glpk]
FAILED tests/test_flux_analysis/test_variability.py::test_parallel_flux_variability[glpk]
FAILED tests/test_flux_analysis/test_variability.py::test_flux_variability_loopless_benchmark[glpk]
FAILED tests/test_flux_analysis/test_variability.py::test_flux_variability_loopless[glpk]
FAILED tests/test_flux_analysis/test_variability.py::test_find_blocked_reactions[glpk]
FAILED tests/test_flux_analysis/test_deletion.py::test_double_gene_deletion
FAILED tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion_benchmark
FAILED tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion
FAILED tests/test_flux_analysis/test_deletion.py::test_deletion_accessor - Fi...
FAILED tests/test_flux_analysis/test_phenotype_phase_plane.py::test_multi_variable_envelope[variables1-20]
FAILED tests/test_flux_analysis/test_phenotype_phase_plane.py::test_multi_variable_envelope[variables2-10]
FAILED tests/test_flux_analysis/test_phenotype_phase_plane.py::test_envelope_two
FAILED tests/test_flux_analysis/test_variability.py::test_fva_data_frame - Fi...
FAILED tests/test_flux_analysis/test_variability.py::test_fva_minimization - ...
FAILED tests/test_flux_analysis/test_variability.py::test_find_blocked_reactions_solver_none
FAILED tests/test_flux_analysis/test_variability.py::test_essential_genes - F...
FAILED tests/test_flux_analysis/test_variability.py::test_essential_reactions
FAILED tests/test_sampling/test_achr.py::test_achr_init_benchmark - FileNotFo...
FAILED tests/test_sampling/test_optgp.py::test_optgp_init_benchmark - FileNot...
FAILED tests/test_sampling/test_sampling.py::test_single_achr - FileNotFoundE...
FAILED tests/test_sampling/test_sampling.py::test_single_optgp - FileNotFound...
FAILED tests/test_sampling/test_sampling.py::test_multi_optgp - FileNotFoundE...
FAILED tests/test_sampling/test_sampling.py::test_fixed_seed - FileNotFoundEr...
FAILED tests/test_sampling/test_sampling.py::test_equality_constraint - FileN...
FAILED tests/test_sampling/test_sampling.py::test_inequality_constraint - Fil...
FAILED tests/test_sampling/test_sampling.py::test_inhomogeneous_sanity - File...
FAILED tests/test_sampling/test_sampling.py::test_complicated_model - FileNot...
FAILED tests/test_sampling/test_sampling.py::test_single_point_space - FileNo...
FAILED tests/test_summary/test_metabolite_summary.py::test_metabolite_summary_interface[optlang-glpk]
FAILED tests/test_summary/test_metabolite_summary.py::test_fdp_production_with_fva[optlang-glpk]
FAILED tests/test_summary/test_model_summary.py::test_model_summary_interface[optlang-glpk]
FAILED tests/test_summary/test_model_summary.py::test_model_summary_fva[optlang-glpk]
FAILED tests/test_util/test_process_pool.py::test_init[attributes0] - FileNot...
FAILED tests/test_util/test_process_pool.py::test_init[attributes1] - FileNot...
FAILED tests/test_util/test_process_pool.py::test_init[attributes2] - FileNot...
FAILED tests/test_util/test_process_pool.py::test_init[attributes3] - FileNot...
FAILED tests/test_util/test_process_pool.py::test_init[attributes4] - FileNot...
FAILED tests/test_util/test_process_pool.py::test_close - FileNotFoundError: ...
FAILED tests/test_util/test_process_pool.py::test_with_context - FileNotFound...
FAILED tests/test_util/test_process_pool.py::test_apply - FileNotFoundError: ...
FAILED tests/test_util/test_process_pool.py::test_apply_async - FileNotFoundE...
FAILED tests/test_util/test_process_pool.py::test_map - FileNotFoundError: [E...
FAILED tests/test_util/test_process_pool.py::test_map_async - FileNotFoundErr...
FAILED tests/test_util/test_process_pool.py::test_imap - FileNotFoundError: [...
FAILED tests/test_util/test_process_pool.py::test_imap_unordered - FileNotFou...
FAILED tests/test_util/test_process_pool.py::test_starmap - FileNotFoundError...
FAILED tests/test_util/test_process_pool.py::test_starmap_async - FileNotFoun...
ERROR tests/test_sampling/test_achr.py::test_achr_sample_benchmark - FileNotF...
ERROR tests/test_sampling/test_achr.py::test_validate_wrong_sample - FileNotF...
ERROR tests/test_sampling/test_achr.py::test_sampling - FileNotFoundError: [E...
ERROR tests/test_sampling/test_achr.py::test_batch_sampling - FileNotFoundErr...
ERROR tests/test_sampling/test_achr.py::test_variables_samples - FileNotFound...
ERROR tests/test_sampling/test_optgp.py::test_optgp_sample_benchmark - FileNo...
ERROR tests/test_sampling/test_optgp.py::test_sampling - FileNotFoundError: [...
ERROR tests/test_sampling/test_optgp.py::test_batch_sampling - FileNotFoundEr...
ERROR tests/test_sampling/test_optgp.py::test_variables_samples - FileNotFoun...
ERROR tests/test_sampling/test_optgp.py::test_reproject - FileNotFoundError: ...
= 48 failed, 452 passed, 27 skipped, 11 xfailed, 3393 warnings, 10 errors in 1788.73s (0:29:48) =
E: pybuild pybuild:379: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cobra/build; python3.10 -m pytest tests
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.10 returned exit code 13
make: *** [debian/rules:10: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2022-11-30T06:14:06Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 1844
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 2182
Job: python-cobra_0.26.0-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 4081
Source-Version: 0.26.0-1
Space: 0
Status: failed
Version: 0.26.0-1
--------------------------------------------------------------------------------
Finished at 2022-11-30T06:14:06Z
Build needed 00:00:00, 0k disc space

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