Build log for python-cobra (0.23.0-1) on armhf

python-cobra → 0.23.0-1 → armhf → 2022-02-21 23:00:35

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| python-cobra 0.23.0-1 (armhf)                Mon, 21 Feb 2022 22:37:51 +0000 |
+==============================================================================+

Package: python-cobra
Version: 0.23.0-1
Source Version: 0.23.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-992a53fa-eae5-4e17-a79e-f2e1605c5196' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.8 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.7 MB]
Fetched 26.5 MB in 12s (2222 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2622 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-cobra 0.23.0-1 (dsc) [3048 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-cobra 0.23.0-1 (tar) [2610 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-cobra 0.23.0-1 (diff) [8988 B]
Fetched 2622 kB in 0s (6146 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-H466RZ/python-cobra-0.23.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-H466RZ' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-EFLo2J/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-EFLo2J/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-EFLo2J/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (3395 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libperl5.32 netbase perl-modules-5.32 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (53.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14451 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema, libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-EFLo2J/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Sources [701 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ Packages [764 B]
Fetched 2798 B in 1s (3700 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libperl5.32 netbase perl-modules-5.32
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev blt bsdextrautils ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
  groff-base intltool-debian libamd2 libarchive-zip-perl libblas-dev libblas3
  libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2
  libcxsparse3 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
  libgraphite2-3 libharfbuzz0b libicu67 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore libklu1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2
  libldl2 libltdl7 libmagic-mgc libmagic1 libmd0 libmetis5 libmongoose2
  libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
  libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
  libpython3.9-stdlib libqhull-r8.0 libraqm0 librbio2 libsbml5 libsigsegv2
  libsliplu1 libspqr2 libsub-override-perl libsuitesparse-dev
  libsuitesparseconfig5 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0
  libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4
  man-db media-types openssl po-debconf python-matplotlib-data python3
  python3-anyio python3-appdirs python3-attr python3-brotli python3-certifi
  python3-chardet python3-charset-normalizer python3-click python3-colorama
  python3-commonmark python3-cpuinfo python3-cycler python3-dateutil
  python3-decorator python3-depinfo python3-dev python3-diskcache
  python3-distutils python3-fonttools python3-fs python3-future python3-h11
  python3-httpcore python3-httpx python3-idna python3-importlib-metadata
  python3-iniconfig python3-jsonschema python3-kiwisolver python3-lib2to3
  python3-lxml python3-lz4 python3-matplotlib python3-minimal
  python3-more-itertools python3-mpmath python3-numpy python3-optlang
  python3-packaging python3-pandas python3-pandas-lib python3-pil
  python3-pil.imagetk python3-pip python3-pipdeptree python3-pkg-resources
  python3-pluggy python3-py python3-pydantic python3-pygments
  python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark
  python3-requests python3-rfc3986 python3-rich python3-ruamel.yaml
  python3-ruamel.yaml.clib python3-sbml5 python3-scipy python3-setuptools
  python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy
  python3-tabulate python3-tk python3-toml python3-typing-extensions
  python3-tz python3-ufolib2 python3-urllib3 python3-wheel python3-zipp
  python3.9 python3.9-dev python3.9-minimal swig swig4.0 tk8.6-blt2.5 ucf
  unicode-data x11-common zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
  python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
  libgettextpo-dev groff liblapack-doc libiodbc2-dev
  default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev
  libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-venv python-attr-doc python-cycler-doc
  python-future-doc python-jsonschema-doc python-lxml-doc dvipng ffmpeg
  fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
  python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
  python3-gobject python3-pyqt5 python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
  gfortran python-numpy-doc python-pandas-doc python3-statsmodels
  python-pil-doc subversion python-pygments-doc ttf-bitstream-vera
  python-pyparsing-doc python3-cryptography python3-openssl python3-socks
  python-requests-doc python-scipy-doc python-setuptools-doc
  texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.9-venv
  python3.9-doc binfmt-support swig-doc swig-examples swig4.0-examples
  swig4.0-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common libgraphblas-dev libltdl-dev
  libmail-sendmail-perl python3-bs4 python3-html5lib python3-bottleneck
  python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables
  python3-jinja2 python3-olefile python3-graphviz python3-elasticsearch
  python3-freezegun python3-pygal
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev blt bsdextrautils ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base
  groff-base intltool-debian libamd2 libarchive-zip-perl libblas-dev libblas3
  libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2
  libcxsparse3 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
  libgraphite2-3 libharfbuzz0b libicu67 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore libklu1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2
  libldl2 libltdl7 libmagic-mgc libmagic1 libmd0 libmetis5 libmongoose2
  libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
  libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
  libpython3.9-stdlib libqhull-r8.0 libraqm0 librbio2 libsbml5 libsigsegv2
  libsliplu1 libspqr2 libsub-override-perl libsuitesparse-dev
  libsuitesparseconfig5 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0
  libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4
  man-db media-types openssl po-debconf python-matplotlib-data python3
  python3-anyio python3-appdirs python3-attr python3-brotli python3-certifi
  python3-chardet python3-charset-normalizer python3-click python3-colorama
  python3-commonmark python3-cpuinfo python3-cycler python3-dateutil
  python3-decorator python3-depinfo python3-dev python3-diskcache
  python3-distutils python3-fonttools python3-fs python3-future python3-h11
  python3-httpcore python3-httpx python3-idna python3-importlib-metadata
  python3-iniconfig python3-jsonschema python3-kiwisolver python3-lib2to3
  python3-lxml python3-lz4 python3-matplotlib python3-minimal
  python3-more-itertools python3-mpmath python3-numpy python3-optlang
  python3-packaging python3-pandas python3-pandas-lib python3-pil
  python3-pil.imagetk python3-pip python3-pipdeptree python3-pkg-resources
  python3-pluggy python3-py python3-pydantic python3-pygments
  python3-pyparsing python3-pyrsistent python3-pytest python3-pytest-benchmark
  python3-requests python3-rfc3986 python3-rich python3-ruamel.yaml
  python3-ruamel.yaml.clib python3-sbml5 python3-scipy python3-setuptools
  python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy
  python3-tabulate python3-tk python3-toml python3-typing-extensions
  python3-tz python3-ufolib2 python3-urllib3 python3-wheel python3-zipp
  python3.9 python3.9-dev python3.9-minimal
  sbuild-build-depends-python-cobra-dummy swig swig4.0 tk8.6-blt2.5 ucf
  unicode-data x11-common zlib1g-dev
0 upgraded, 204 newly installed, 0 to remove and 2 not upgraded.
Need to get 108 MB of archives.
After this operation, 464 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EFLo2J/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1048 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.10-1+rpi1 [794 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.4-1 [82.4 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.10-1+rpi1 [1595 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.8-1 [38.5 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 5.0.0 [32.5 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.10-1+rpi1 [1611 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.10-1+rpi1 [488 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.8-1 [21.6 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.8-1 [38.1 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.1-1 [1358 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1m-1 [815 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.1+dfsg-1 [334 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.5-1 [108 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.24-2 [1234 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220215 [112 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libsuitesparseconfig5 armhf 1:5.10.1+dfsg-4 [23.3 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libamd2 armhf 1:5.10.1+dfsg-4 [29.9 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-2 [114 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libbtf1 armhf 1:5.10.1+dfsg-4 [23.7 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libcamd2 armhf 1:5.10.1+dfsg-4 [30.5 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libccolamd2 armhf 1:5.10.1+dfsg-4 [31.4 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libcolamd2 armhf 1:5.10.1+dfsg-4 [28.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-16+rpi1 [235 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libmetis5 armhf 5.1.0.dfsg-7 [133 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libcholmod3 armhf 1:5.10.1+dfsg-4 [212 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libcxsparse3 armhf 1:5.10.1+dfsg-4 [51.7 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.4-1 [135 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.4-1 [1209 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.6-15 [388 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libglpk40 armhf 5.0-1 [327 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg-3 [337 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libgmp-dev armhf 2:6.2.1+dfsg-3 [582 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libklu1 armhf 1:5.10.1+dfsg-4 [51.5 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libldl2 armhf 1:5.10.1+dfsg-4 [23.5 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libmongoose2 armhf 1:5.10.1+dfsg-4 [43.5 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libumfpack5 armhf 1:5.10.1+dfsg-4 [128 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf librbio2 armhf 1:5.10.1+dfsg-4 [32.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libspqr2 armhf 1:5.10.1+dfsg-4 [67.8 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libsliplu1 armhf 1:5.10.1+dfsg-4 [49.2 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-2 [2851 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libsuitesparse-dev armhf 1:5.10.1+dfsg-4 [614 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libglpk-dev armhf 5.0-1 [369 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.0+dfsg-1 [250 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.2-1 [139 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-10 [24.2 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-6 [150 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.10-1+rpi1 [1419 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.10-1+rpi1 [3015 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.8-1 [21.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-4 [221 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libsbml5 armhf 5.19.0+dfsg-1+b1 [1693 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-4 [272 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.34-4 [218 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.1-2 [2741 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-sniffio all 1.2.0-1 [6372 B]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-typing-extensions all 3.10.0.2-1 [35.2 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-anyio all 3.5.0-2 [53.0 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-2 [12.9 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 21.2.0-1 [57.5 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b1 [279 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.4-1 [28.5 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.0.3-1 [91.9 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-commonmark all 0.9.1-3 [44.9 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-cpuinfo all 5.0.0-2 [19.0 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-depinfo armhf 1.7.0-2 [6072 B]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.10-1+rpi1 [501 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.8-1 [25.3 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-diskcache all 5.4.0-1 [33.7 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1 [3437 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.3-2 [11.8 MB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.9-1 [4227 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2021.3-1 [34.9 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.12-1 [89.1 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.7.1-1 [965 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 3.1.3+dfsg-1 [29.1 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 14.0.0-1.1 [7868 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.29.1-1 [776 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-5 [349 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-h11 all 0.13.0-1 [49.8 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-httpcore all 0.14.3-1 [33.0 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.7.1+dfsg-2.1 [657 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-rich all 10.16.2-1 [179 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-rfc3986 all 1.5.0-2 [22.2 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-httpx all 0.21.1-1 [81.9 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-pyrsistent armhf 0.15.5-1+b2 [56.5 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-jsonschema all 3.2.0-5 [46.4 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1 [45.8 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.0.0-1 [421 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.9.10-1 [104 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.0.0-1 [76.4 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.1-2 [6484 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-swiglpk armhf 4.65.1-1 [54.8 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-optlang all 1.4.4-2 [67.7 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-2 [2971 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-2 [2654 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-wheel all 0.37.1-2 [31.6 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-pip all 22.0.2+dfsg-1 [1309 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-pipdeptree armhf 2.2.0-3 [20.6 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 0.13.0-7.1 [22.3 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-pydantic all 1.9.0-1 [153 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 6.2.5-1 [218 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-benchmark all 3.2.2-2 [46.4 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.5-1~exp1 [114 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.25.1+dfsg-2 [69.3 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf python3-ruamel.yaml.clib armhf 0.2.6-1 [100 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-ruamel.yaml all 0.17.16-1 [102 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf swig4.0 armhf 4.0.2-2 [1221 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf swig all 4.0.2-2 [330 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf python3-sbml5 armhf 5.19.0+dfsg-1+b1 [2872 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf python3-simplejson armhf 3.17.6-1 [61.5 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf python3-tabulate all 0.8.9-1 [35.2 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpython3.9-minimal:armhf (3.9.10-1+rpi1) ...
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-lxml:armhf (4.7.1-1) ...
Setting up python3-dateutil (2.8.1-6) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-diskcache (5.4.0-1) ...
Setting up python3-lib2to3 (3.9.10-1) ...
Setting up python3-appdirs (1.4.4-2) ...
Setting up python3-swiglpk (4.65.1-1) ...
Setting up python3-commonmark (0.9.1-3) ...
Setting up python3-pkg-resources (59.6.0-1.2) ...
Setting up python3-distutils (3.9.10-1) ...
Setting up dh-python (5.20220215) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sniffio (1.2.0-1) ...
Setting up python3-sympy (1.9-1) ...
Setting up python3-attr (21.2.0-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libpython3-dev:armhf (3.9.8-1) ...
Setting up python3-setuptools (59.6.0-1.2) ...
Setting up python3-py (1.10.0-1) ...
Setting up libsuitesparse-dev:armhf (1:5.10.1+dfsg-4) ...
Setting up python3-anyio (3.5.0-2) ...
Setting up python3-colorama (0.4.4-1) ...
Setting up python3-lz4 (3.1.3+dfsg-1) ...
Setting up python3-charset-normalizer (2.0.6-2) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up python3-ruamel.yaml.clib:armhf (0.2.6-1) ...
Setting up python3-tabulate (0.8.9-1) ...
Setting up debhelper (13.6) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-click (8.0.3-1) ...
Setting up python3-wheel (0.37.1-2) ...
Setting up python3-fs (2.4.12-1) ...
Setting up python3-pygments (2.7.1+dfsg-2.1) ...
Setting up python3-packaging (21.3-1) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up python3-rfc3986 (1.5.0-2) ...
Setting up python3-jsonschema (3.2.0-5) ...
Setting up libglpk-dev:armhf (5.0-1) ...
Setting up python3-pydantic (1.9.0-1) ...
Setting up python3-dev (3.9.8-1) ...
Setting up python3-requests (2.25.1+dfsg-2) ...
Setting up python3-depinfo (1.7.0-2) ...
Setting up python3-pip (22.0.2+dfsg-1) ...
Setting up python3-numpy (1:1.21.5-1) ...
Setting up python3-ruamel.yaml (0.17.16-1) ...
Setting up python3-future (0.18.2-5) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-pipdeptree (2.2.0-3) ...
Setting up python3-optlang (1.4.4-2) ...
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
  if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
  if status is "optimal":
Setting up python3-httpcore (0.14.3-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-scipy (1.7.3-2) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
Setting up python3-rich (10.16.2-1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-pandas-lib:armhf (1.3.5+dfsg-2) ...
Setting up python3-tk:armhf (3.9.10-1) ...
Setting up python3-pandas (1.3.5+dfsg-2) ...
Setting up python3-httpx (0.21.1-1) ...
Setting up python3-pluggy (0.13.0-7.1) ...
Setting up python3-pytest (6.2.5-1) ...
Setting up python3-pytest-benchmark (3.2.2-2) ...
Setting up python3-fonttools (4.29.1-1) ...
Setting up python3-pil:armhf (9.0.0-1) ...
Setting up python3-pil.imagetk:armhf (9.0.0-1) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Setting up python3-matplotlib (3.5.1-2) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-5+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.37.90.20220207-1+rpi1 dpkg-dev_1.21.1+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-5+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.15.15-2+rpi1
Package versions: adduser_3.118 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220207-1+rpi1 binutils-arm-linux-gnueabihf_2.37.90.20220207-1+rpi1 binutils-common_2.37.90.20220207-1+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 cython3_0.29.24-2 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20220215 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3 dpkg_1.21.1+rpi1 dpkg-dev_1.21.1+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3 gpg_2.2.27-3 gpg-agent_2.2.27-3 gpg-wks-client_2.2.27-3 gpg-wks-server_2.2.27-3 gpgconf_2.2.27-3 gpgsm_2.2.27-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libamd2_1:5.10.1+dfsg-4 libapt-pkg6.0_2.3.15 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1 libbinutils_2.37.90.20220207-1+rpi1 libblas-dev_3.10.0-2 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.5-1 libbtf1_1:5.10.1+dfsg-4 libbz2-1.0_1.0.8-5 libc-bin_2.33-5+rpi1 libc-dev-bin_2.33-5+rpi1 libc6_2.33-5+rpi1 libc6-dev_2.33-5+rpi1 libcamd2_1:5.10.1+dfsg-4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libccolamd2_1:5.10.1+dfsg-4 libcholmod3_1:5.10.1+dfsg-4 libcolamd2_1:5.10.1+dfsg-4 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.37.90.20220207-1+rpi1 libctf0_2.37.90.20220207-1+rpi1 libcxsparse3_1:5.10.1+dfsg-4 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdeflate0_1.8-1 libdpkg-perl_1.21.1+rpi1 libelf1_0.186-1 libexpat1_2.4.4-1 libexpat1-dev_2.4.4-1 libext2fs2_1.46.5-2 libfakeroot_1.27-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.4 libfreetype6_2.11.1+dfsg-1 libfribidi0_1.0.8-2 libgcc-11-dev_11.2.0-16+rpi1 libgcc-s1_11.2.0-16+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_11.2.0-16+rpi1 libglib2.0-0_2.70.4-1 libglpk-dev_5.0-1 libglpk40_5.0-1 libgmp-dev_2:6.2.1+dfsg-3 libgmp10_2:6.2.1+dfsg-3 libgmpxx4ldbl_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-16+rpi1 libgpg-error0_1.43-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libimagequant0_2.17.0-1 libisl23_0.24-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui_1.13.0+dfsg-1 libjs-sphinxdoc_4.3.2-1 libjs-underscore_1.13.2~dfsg-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libklu1_1:5.10.1+dfsg-4 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack-dev_3.10.0-2 liblapack3_3.10.0-2 liblbfgsb0_3.0+dfsg.3-10 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1+b1 libldl2_1:5.10.1+dfsg-4 libltdl7_2.4.6-15 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmetis5_5.1.0.dfsg-7 libmongoose2_1:5.10.1+dfsg-4 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.4.0-6 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libpng16-16_1.6.37-3 libpython3-dev_3.9.8-1 libpython3-stdlib_3.9.8-1 libpython3.9_3.9.10-1+rpi1 libpython3.9-dev_3.9.10-1+rpi1 libpython3.9-minimal_3.9.10-1+rpi1 libpython3.9-stdlib_3.9.10-1+rpi1 libqhull-r8.0_2020.2-4 libraqm0_0.7.0-4 librbio2_1:5.10.1+dfsg-4 libreadline8_8.1.2-1 libsasl2-2_2.1.27+dfsg2-3 libsasl2-modules-db_2.1.27+dfsg2-3 libsbml5_5.19.0+dfsg-1+b1 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsliplu1_1:5.10.1+dfsg-4 libsmartcols1_2.37.3-1 libspqr2_1:5.10.1+dfsg-4 libsqlite3-0_3.37.2-2 libss2_1.46.5-2 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 libsub-override-perl_0.09-2 libsuitesparse-dev_1:5.10.1+dfsg-4 libsuitesparseconfig5_1:5.10.1+dfsg-4 libsystemd0_250.3-2+rpi1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libtiff5_4.3.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.6-15 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.3-2+rpi1 libumfpack5_1:5.10.1+dfsg-4 libunistring2_1.0-1 libuuid1_2.37.3-1 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxrender1_1:0.9.10-1 libxslt1.1_1.1.34-4 libxss1_1:1.2.3-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.15.15-2+rpi1 login_1:4.11.1+dfsg1-1 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.1-1 mawk_1.3.4.20200120-3 media-types_5.0.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 openssl_1.1.1m-1 passwd_1:4.11.1+dfsg1-1 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.5.1-2 python3_3.9.8-1 python3-anyio_3.5.0-2 python3-appdirs_1.4.4-2 python3-attr_21.2.0-1 python3-brotli_1.0.9-2+b1 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-charset-normalizer_2.0.6-2 python3-click_8.0.3-1 python3-colorama_0.4.4-1 python3-commonmark_0.9.1-3 python3-cpuinfo_5.0.0-2 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-depinfo_1.7.0-2 python3-dev_3.9.8-1 python3-diskcache_5.4.0-1 python3-distutils_3.9.10-1 python3-fonttools_4.29.1-1 python3-fs_2.4.12-1 python3-future_0.18.2-5 python3-h11_0.13.0-1 python3-httpcore_0.14.3-1 python3-httpx_0.21.1-1 python3-idna_3.3-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-2 python3-jsonschema_3.2.0-5 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.10-1 python3-lxml_4.7.1-1 python3-lz4_3.1.3+dfsg-1 python3-matplotlib_3.5.1-2 python3-minimal_3.9.8-1 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-numpy_1:1.21.5-1 python3-optlang_1.4.4-2 python3-packaging_21.3-1 python3-pandas_1.3.5+dfsg-2 python3-pandas-lib_1.3.5+dfsg-2 python3-pil_9.0.0-1 python3-pil.imagetk_9.0.0-1 python3-pip_22.0.2+dfsg-1 python3-pipdeptree_2.2.0-3 python3-pkg-resources_59.6.0-1.2 python3-pluggy_0.13.0-7.1 python3-py_1.10.0-1 python3-pydantic_1.9.0-1 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-pyrsistent_0.15.5-1+b2 python3-pytest_6.2.5-1 python3-pytest-benchmark_3.2.2-2 python3-requests_2.25.1+dfsg-2 python3-rfc3986_1.5.0-2 python3-rich_10.16.2-1 python3-ruamel.yaml_0.17.16-1 python3-ruamel.yaml.clib_0.2.6-1 python3-sbml5_5.19.0+dfsg-1+b1 python3-scipy_1.7.3-2 python3-setuptools_59.6.0-1.2 python3-simplejson_3.17.6-1 python3-six_1.16.0-3 python3-sniffio_1.2.0-1 python3-swiglpk_4.65.1-1 python3-sympy_1.9-1 python3-tabulate_0.8.9-1 python3-tk_3.9.10-1 python3-toml_0.10.2-1 python3-typing-extensions_3.10.0.2-1 python3-tz_2021.3-1 python3-ufolib2_0.13.1+dfsg1-1 python3-urllib3_1.26.5-1~exp1 python3-wheel_0.37.1-2 python3-zipp_1.0.0-3 python3.9_3.9.10-1+rpi1 python3.9-dev_3.9.10-1+rpi1 python3.9-minimal_3.9.10-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 swig_4.0.2-2 swig4.0_4.0.2-2 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2021e-1 ucf_3.0043 unicode-data_14.0.0-1.1 util-linux_2.37.3-1 x11-common_1:7.7+23 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.PTOBkS5h/trustedkeys.kbx': General error
gpgv: Signature made Sat Feb 19 07:56:43 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-cobra_0.23.0-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.23.0.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.23.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying no_importlib_resources_for_test.patch
dpkg-source: info: applying xfail_test_show_versions.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-992a53fa-eae5-4e17-a79e-f2e1605c5196
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.23.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:237: python3.9 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra
copying src/cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra
copying src/cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
copying src/cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
copying src/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
copying src/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
copying src/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
copying src/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
copying src/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test
copying src/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test
copying src/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
copying src/cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
copying src/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/test/test_manipulation/test_validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation
copying src/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/JSON_with_inf_bounds.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
copying src/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build; python3.9 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.9.10, pytest-6.2.5, py-1.10.0, pluggy-0.13.0
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, configfile: tox.ini
plugins: anyio-3.5.0, benchmark-3.2.2
collected 11 items

cobra/test/test_manipulation/test_annotate.py .                          [  9%]
cobra/test/test_manipulation/test_delete.py ......                       [ 63%]
cobra/test/test_manipulation/test_modify.py ..                           [ 81%]
cobra/test/test_manipulation/test_validate.py ..                         [100%]

=============================== warnings summary ===============================
cobra/core/dictlist.py:214
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="?
    if current_length is 0:

cobra/core/gene.py:247
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:247: DeprecationWarning: invalid escape sequence \(
    the_gene_re = re.compile("(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(self.id))

cobra/core/gene.py:267
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:267: DeprecationWarning: invalid escape sequence \(
    "(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(other_gene.id)

cobra/core/reaction.py:42
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py:42: DeprecationWarning: invalid escape sequence \s
    compartment_finder = re.compile("^\s*(\[[A-Za-z]\])\s*:*")

cobra/io/mat.py:13
cobra/io/mat.py:13
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/mat.py:13: DeprecationWarning: `np.object` is a deprecated alias for the builtin `object`. To silence this warning, use `object` by itself. Doing this will not modify any behavior and is safe. 
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    from numpy import object as np_object

.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_annotate.py::test_sbo_annotation
  /usr/lib/python3/dist-packages/optlang/interface.py:1358: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
    if isinstance(stuff, collections.Iterable):

.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_delete.py: 49 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/delete.py:140: DeprecationWarning: The function `find_gene_knockout_reactions` has outlived its purpose. It will be removed in the next minor version (0.23.0).
    warn(

-- Docs: https://docs.pytest.org/en/stable/warnings.html
======================= 11 passed, 56 warnings in 15.84s =======================
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/configuration.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/singleton.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/dictlist.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/gene.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/species.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/object.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/metabolite.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/formula.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/model.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/group.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/reaction.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/solution.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/abstract_model_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/bigg_models_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/biomodels_repository.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/load.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/load.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/dict.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/json.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/mat.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/sbml.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/yaml.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/delete.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/modify.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/validate.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/annotations.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/core.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/achr.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/core.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/optgp.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/sampling.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/model_summary.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/test_validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_annotate.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_delete.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_modify.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation/__pycache__/test_validate.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/JSON_with_inf_bounds.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/conftest.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/process_pool.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/array.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/context.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/solver.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/util.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/process_pool.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/exceptions.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/exceptions.py to exceptions.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/configuration.py to configuration.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/dictlist.py to dictlist.cpython-39.pyc
/usr/lib/python3.9/dist-packages/cobra/core/dictlist.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="?
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/formula.py to formula.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/gene.py to gene.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/group.py to group.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/metabolite.py to metabolite.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/model.py to model.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/object.py to object.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/reaction.py to reaction.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/singleton.py to singleton.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/solution.py to solution.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/species.py to species.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/room.py to room.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/dict.py to dict.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/json.py to json.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/mat.py to mat.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/sbml.py to sbml.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/yaml.py to yaml.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/load.py to load.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/delete.py to delete.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/modify.py to modify.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/validate.py to validate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/annotations.py to annotations.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/achr.py to achr.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/core.py to core.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/optgp.py to optgp.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/sampling.py to sampling.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/summary.py to summary.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/conftest.py to conftest.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/test_annotate.py to test_annotate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/test_delete.py to test_delete.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/test_modify.py to test_modify.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation/test_validate.py to test_validate.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/array.py to array.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/context.py to context.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/process_pool.py to process_pool.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/solver.py to solver.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/util.py to util.cpython-39.pyc
running install_egg_info
running egg_info
creating src/cobra.egg-info
writing src/cobra.egg-info/PKG-INFO
writing dependency_links to src/cobra.egg-info/dependency_links.txt
writing requirements to src/cobra.egg-info/requires.txt
writing top-level names to src/cobra.egg-info/top_level.txt
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
Copying src/cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra-0.23.0.egg-info
Skipping SOURCES.txt
running install_scripts
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 pydist:292: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info.
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_lintian -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.23.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../python-cobra_0.23.0-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../python-cobra_0.23.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-21T23:00:29Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


python-cobra_0.23.0-1_armhf.changes:
------------------------------------

Format: 1.8
Date: Sat, 19 Feb 2022 08:53:02 +0100
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.23.0-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 python3-cobra - constraint-based modeling of biological networks with Python 3
Changes:
 python-cobra (0.23.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.6.0 (routine-update)
Checksums-Sha1:
 9dbe7f1f29aa2df008053a948a6a8aed43c5c1d8 10068 python-cobra_0.23.0-1_armhf.buildinfo
 c0e818433337fefd568bad8de7f486d565324aac 116292 python3-cobra_0.23.0-1_armhf.deb
Checksums-Sha256:
 194c4a01512d9dfa3562f820e99611471fd3fc34cd21fdae477ea818999397e9 10068 python-cobra_0.23.0-1_armhf.buildinfo
 08dfcaca36c6c1b5a2f4e6b390a9af2400b360e6ea50ac3d70c757f23fcb9a3f 116292 python3-cobra_0.23.0-1_armhf.deb
Files:
 a067ebe9739eb07651fa28b3921d1b6e 10068 python optional python-cobra_0.23.0-1_armhf.buildinfo
 ebf5d3ddf41e7e626c0d763f0e2cc6d0 116292 python optional python3-cobra_0.23.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-cobra_0.23.0-1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 116292 bytes: control archive=3472 bytes.
    1187 bytes,    19 lines      control              
    7496 bytes,    82 lines      md5sums              
     263 bytes,    12 lines   *  postinst             #!/bin/sh
     412 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-cobra
 Source: python-cobra
 Version: 0.23.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 627
 Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-future, python3-httpx, python3-numpy, python3-optlang, python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 4.65.1), python3:any, python-cobra-data (= 0.23.0-1), python3-simplejson, python3-tabulate, python3-sbml5
 Suggests: python3-matplotlib, qsopt-ex
 Section: python
 Priority: optional
 Homepage: https://opencobra.github.io/cobrapy/
 Description: constraint-based modeling of biological networks with Python 3
  COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
  used for genome-scale modeling of metabolic networks in both prokaryotes
  and eukaryotes. COBRApy is a constraint-based modeling package that is
  designed to accommodate the biological complexity of the next generation
  of COBRA models and provides access to commonly used COBRA methods, such
  as flux balance analysis, flux variability analysis, and gene deletion
  analyses.

drwxr-xr-x root/root         0 2022-02-19 07:53 ./
drwxr-xr-x root/root         0 2022-02-19 07:53 ./usr/
drwxr-xr-x root/root         0 2022-02-19 07:53 ./usr/lib/
drwxr-xr-x root/root         0 2022-02-19 07:53 ./usr/lib/python3/
drwxr-xr-x root/root         0 2022-02-19 07:53 ./usr/lib/python3/dist-packages/
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-rw-r--r-- root/root      8715 2022-02-19 07:53 ./usr/lib/python3/dist-packages/cobra-0.23.0.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2022-02-19 07:53 ./usr/lib/python3/dist-packages/cobra-0.23.0.egg-info/dependency_links.txt
-rw-r--r-- root/root        81 2022-02-19 07:53 ./usr/lib/python3/dist-packages/cobra-0.23.0.egg-info/requires.txt
-rw-r--r-- root/root         6 2022-02-19 07:53 ./usr/lib/python3/dist-packages/cobra-0.23.0.egg-info/top_level.txt
-rw-r--r-- root/root         1 2022-02-19 07:53 ./usr/lib/python3/dist-packages/cobra-0.23.0.egg-info/zip-safe
drwxr-xr-x root/root         0 2022-02-19 07:53 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root       393 2022-01-24 00:19 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root         0 2022-02-19 07:53 ./usr/lib/python3/dist-packages/cobra/core/
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| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 25912
Build-Time: 44
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1289
Job: python-cobra_0.23.0-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1358
Source-Version: 0.23.0-1
Space: 25912
Status: successful
Version: 0.23.0-1
--------------------------------------------------------------------------------
Finished at 2022-02-21T23:00:29Z
Build needed 00:22:38, 25912k disk space
Raspbian Package Auto-Building

Build log for python-cobra (0.23.0-1) on armhf
