python-cobra →
0.19.0-1 →
armhf → 2020-11-07 18:08:00
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| python-cobra 0.19.0-1 (armhf) Sat, 07 Nov 2020 17:49:54 +0000 |
+==============================================================================+
Package: python-cobra
Version: 0.19.0-1
Source Version: 0.19.0-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-71c172f2-d4eb-4aba-bca6-cd5c816890d1' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2576 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-cobra 0.19.0-1 (dsc) [2914 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-cobra 0.19.0-1 (tar) [2566 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-cobra 0.19.0-1 (diff) [7496 B]
Fetched 2576 kB in 0s (5234 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-0x0rkA/python-cobra-0.19.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-0x0rkA' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-7ulua0/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-7ulua0/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-7ulua0/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (9716 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 23 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (65.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12710 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-7ulua0/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Sources [675 B]
Get:5 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ Packages [743 B]
Fetched 2751 B in 0s (12.6 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates cpp-10 cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
g++-10 gcc-10 gcc-10-base gettext gettext-base groff-base intltool-debian
libamd2 libarchive-zip-perl libasan6 libatomic1 libblas-dev libblas3
libbrotli1 libbsd0 libbtf1 libcamd2 libcc1-0 libccolamd2 libcholmod3
libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgcc-10-dev
libgcc-s1 libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev
libgmpxx4ldbl libgomp1 libgraphblas3 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libklu1 liblapack-dev
liblapack3 liblcms2-2 libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5
libmongoose2 libpipeline1 libpng16-16 libpython3-dev libpython3-stdlib
libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib
librbio2 libsbml5 libsigsegv2 libsliplu1 libspqr2 libstdc++-10-dev
libstdc++6 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5
libtiff5 libtool libubsan1 libuchardet0 libumfpack5 libwebp6 libwebpdemux2
libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 man-db mime-support
node-jquery openssl po-debconf python-matplotlib-data python-pip-whl python3
python3-atomicwrites python3-attr python3-certifi python3-chardet
python3-cpuinfo python3-cycler python3-dateutil python3-depinfo python3-dev
python3-distutils python3-future python3-idna python3-importlib-metadata
python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-optlang python3-packaging python3-pandas python3-pandas-lib
python3-pil python3-pip python3-pipdeptree python3-pkg-resources
python3-pluggy python3-py python3-pyparsing python3-pyrsistent
python3-pytest python3-pytest-benchmark python3-requests python3-ruamel.yaml
python3-ruamel.yaml.clib python3-sbml5 python3-setuptools python3-simplejson
python3-six python3-swiglpk python3-sympy python3-tabulate python3-tz
python3-urllib3 python3-wcwidth python3-wheel python3-zipp python3.8
python3.8-dev python3.8-minimal swig swig4.0 ttf-bitstream-vera zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales cython-doc
dh-make gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev groff
liblapack-doc libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc
libmpfr-dev libjs-jquery-ui-docs liblcms2-utils libstdc++-10-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
python-cycler-doc python-future-doc python-jsonschema-doc dvipng ffmpeg
ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-nose python3-pyqt5 python3-scipy python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-numpy-dbg
python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg
subversion python-pyparsing-doc python3-cryptography python3-openssl
python3-socks python-requests-doc python-setuptools-doc texlive-fonts-extra
python-sympy-doc python3.8-venv python3.8-doc binfmt-support swig-doc
swig-examples swig4.0-examples swig4.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python3-tk
python3-scipy python3-bottleneck python3-numexpr python3-odf
python3-openpyxl python3-xlrd python3-xlwt python3-bs4 python3-html5lib
python3-lxml python3-tables python3-jinja2 python3-olefile python3-graphviz
python3-elasticsearch python3-freezegun python3-pygal
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbtf1 libcamd2 libccolamd2
libcholmod3 libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libgraphblas3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libklu1 liblapack-dev liblapack3 liblcms2-2 libldl2 libltdl7
libmagic-mgc libmagic1 libmetis5 libmongoose2 libpipeline1 libpng16-16
libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib librbio2 libsbml5 libsigsegv2
libsliplu1 libspqr2 libsub-override-perl libsuitesparse-dev
libsuitesparseconfig5 libtiff5 libtool libuchardet0 libumfpack5 libwebp6
libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 man-db
mime-support node-jquery openssl po-debconf python-matplotlib-data
python-pip-whl python3 python3-atomicwrites python3-attr python3-certifi
python3-chardet python3-cpuinfo python3-cycler python3-dateutil
python3-depinfo python3-dev python3-distutils python3-future python3-idna
python3-importlib-metadata python3-jsonschema python3-kiwisolver
python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-numpy python3-optlang python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pip python3-pipdeptree
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pyrsistent python3-pytest python3-pytest-benchmark python3-requests
python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5
python3-setuptools python3-simplejson python3-six python3-swiglpk
python3-sympy python3-tabulate python3-tz python3-urllib3 python3-wcwidth
python3-wheel python3-zipp python3.8 python3.8-dev python3.8-minimal
sbuild-build-depends-python-cobra-dummy swig swig4.0 ttf-bitstream-vera
zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
13 upgraded, 153 newly installed, 0 to remove and 10 not upgraded.
Need to get 266 MB of archives.
After this operation, 1069 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-7ulua0/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1028 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.0-16+rpi1 [115 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.0-16+rpi1 [200 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.0-16+rpi1 [36.1 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.0-16+rpi1 [83.7 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.0-16+rpi1 [8208 B]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.0-16+rpi1 [301 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.0-16+rpi1 [55.6 MB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.0-16+rpi1 [31.7 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.0-16+rpi1 [61.3 MB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.0-16+rpi1 [62.0 MB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.0-16+rpi1 [682 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.0-16+rpi1 [1750 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.0-16+rpi1 [408 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.6-1 [752 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.6-1 [1552 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.6-1 [1654 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.6-1 [422 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-3 [1258 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.181-1 [161 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.2-1 [1176 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.1 [578 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.5.2-1 [200 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libsuitesparseconfig5 armhf 1:5.8.1+dfsg-2 [22.6 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libamd2 armhf 1:5.8.1+dfsg-2 [29.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libbtf1 armhf 1:5.8.1+dfsg-2 [23.2 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcamd2 armhf 1:5.8.1+dfsg-2 [29.8 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libccolamd2 armhf 1:5.8.1+dfsg-2 [30.5 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libcolamd2 armhf 1:5.8.1+dfsg-2 [27.4 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-16+rpi1 [232 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libmetis5 armhf 5.1.0.dfsg-7 [133 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libcholmod3 armhf 1:5.8.1+dfsg-2 [212 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libcxsparse3 armhf 1:5.8.1+dfsg-2 [51.6 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-4 [345 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libglpk40 armhf 4.65-2 [339 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libgmpxx4ldbl armhf 2:6.2.0+dfsg-6 [22.1 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libgmp-dev armhf 2:6.2.0+dfsg-6 [587 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libgraphblas3 armhf 1:5.8.1+dfsg-2 [4826 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libklu1 armhf 1:5.8.1+dfsg-2 [51.1 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libldl2 armhf 1:5.8.1+dfsg-2 [23.0 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libmongoose2 armhf 1:5.8.1+dfsg-2 [43.3 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libumfpack5 armhf 1:5.8.1+dfsg-2 [127 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf librbio2 armhf 1:5.8.1+dfsg-2 [31.9 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libspqr2 armhf 1:5.8.1+dfsg-2 [68.7 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libsliplu1 armhf 1:5.8.1+dfsg-2 [48.1 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libsuitesparse-dev armhf 1:5.8.1+dfsg-2 [5224 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libglpk-dev armhf 4.65-2 [379 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg-4 [309 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg-4 [3612 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-7 [232 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.6-1 [1343 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.6-1 [2887 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libsbml5 armhf 5.18.0+dfsg-2+b1 [1691 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.3.2-2 [4153 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python-pip-whl all 20.1.1-2 [1887 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.4.0-1 [10.2 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 20.1.0-1 [51.8 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-cpuinfo all 5.0.0-2 [19.0 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-1 [16.8 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.8.1-4 [81.6 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-wheel all 0.34.2-1 [24.0 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-pip all 20.1.1-2 [295 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-pipdeptree armhf 1.0.0-1 [16.0 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-depinfo armhf 1.5.4-1 [5796 B]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.6-1 [519 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-future all 0.18.2-4 [348 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf python3-pyrsistent armhf 0.15.5-1+b1 [57.7 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-jsonschema all 3.2.0-3 [46.3 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.2.0-1 [45.5 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1 [2961 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 8.0.1-1 [405 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.3.2-2 [4103 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf python3-mpmath all 1.1.0-2 [417 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf python3-swiglpk armhf 4.65.0-2+b1 [70.5 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf python3-sympy all 1.6.2-2 [3925 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3-optlang all 1.4.4-2 [67.7 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.4-1 [30.4 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2020.1-2 [34.6 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 1.1.3+dfsg-2 [2966 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 1.1.3+dfsg-2 [2090 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-5 [22.1 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.9.0-1 [94.0 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.11-1 [268 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-benchmark all 3.2.2-2 [46.4 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.9-1 [105 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.24.0+dfsg-1 [71.7 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf python3-ruamel.yaml.clib armhf 0.2.2-1 [113 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf python3-ruamel.yaml all 0.16.12-2 [110 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf swig4.0 armhf 4.0.1-5 [1236 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf swig all 4.0.1-5 [329 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf python3-sbml5 armhf 5.18.0+dfsg-2+b1 [2867 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf python3-simplejson armhf 3.17.0-1 [58.8 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf python3-tabulate all 0.8.7-0.1 [33.8 kB]
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/usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:986: SyntaxWarning: "is" with a literal. Did you mean "=="?
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Not building database; man-db/auto-update is not 'true'.
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/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
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/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="?
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/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
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/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
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Processing triggers for libc-bin (2.31-4+rpi1) ...
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Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc1-2 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 cython3_0.29.21-3 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 fonts-lyx_2.3.5.2-1 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 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libpython3-stdlib_3.8.2-3 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 librbio2_1:5.8.1+dfsg-2 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libsbml5_5.18.0+dfsg-2+b1 libseccomp2_2.4.4-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsliplu1_1:5.8.1+dfsg-2 libsmartcols1_2.36-3 libspqr2_1:5.8.1+dfsg-2 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-override-perl_0.09-2 libsuitesparse-dev_1:5.8.1+dfsg-2 libsuitesparseconfig5_1:5.8.1+dfsg-2 libsystemd0_246.4-1+rpi1 libtasn1-6_4.16.0-2 libtiff5_4.1.0+git191117-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.4-1+rpi1 libumfpack5_1:5.8.1+dfsg-2 libunistring2_0.9.10-4 libuuid1_2.36-3 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-6.1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 node-jquery_3.5.1+dfsg-4 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python-matplotlib-data_3.3.2-2 python-pip-whl_20.1.1-2 python3_3.8.2-3 python3-atomicwrites_1.4.0-1 python3-attr_20.1.0-1 python3-certifi_2020.6.20-1 python3-chardet_3.0.4-7 python3-cpuinfo_5.0.0-2 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-4 python3-depinfo_1.5.4-1 python3-dev_3.8.2-3 python3-distutils_3.8.6-1 python3-future_0.18.2-4 python3-idna_2.10-1 python3-importlib-metadata_1.6.0-2 python3-jsonschema_3.2.0-3 python3-kiwisolver_1.2.0-1 python3-lib2to3_3.8.6-1 python3-matplotlib_3.3.2-2 python3-minimal_3.8.2-3 python3-more-itertools_4.2.0-3 python3-mpmath_1.1.0-2 python3-numpy_1:1.19.4-1 python3-optlang_1.4.4-2 python3-packaging_20.4-1 python3-pandas_1.1.3+dfsg-2 python3-pandas-lib_1.1.3+dfsg-2 python3-pil_8.0.1-1 python3-pip_20.1.1-2 python3-pipdeptree_1.0.0-1 python3-pkg-resources_50.3.0-1 python3-pluggy_0.13.0-5 python3-py_1.9.0-1 python3-pyparsing_2.4.7-1 python3-pyrsistent_0.15.5-1+b1 python3-pytest_4.6.11-1 python3-pytest-benchmark_3.2.2-2 python3-requests_2.24.0+dfsg-1 python3-ruamel.yaml_0.16.12-2 python3-ruamel.yaml.clib_0.2.2-1 python3-sbml5_5.18.0+dfsg-2+b1 python3-setuptools_50.3.0-1 python3-simplejson_3.17.0-1 python3-six_1.15.0-1 python3-swiglpk_4.65.0-2+b1 python3-sympy_1.6.2-2 python3-tabulate_0.8.7-0.1 python3-tz_2020.1-2 python3-urllib3_1.25.9-1 python3-wcwidth_0.1.9+dfsg1-2 python3-wheel_0.34.2-1 python3-zipp_1.0.0-3 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5 swig4.0_4.0.1-5 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 ttf-bitstream-vera_1.10-8 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.tcZcqDMs/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 5 18:51:11 2020 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.19.0-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.19.0.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.19.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying no_importlib_resources_for_test.patch
dpkg-source: info: applying xfail_test_show_versions.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-71c172f2-d4eb-4aba-bca6-cd5c816890d1
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.19.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:232: python3.8 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.8 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying src/cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying src/cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying src/cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying src/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying src/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying src/cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying src/cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying src/cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying src/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying src/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying src/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying src/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying src/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying src/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying src/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying src/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying src/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying src/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying src/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying src/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying src/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying src/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying src/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying src/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary
copying src/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary
copying src/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary
copying src/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary
copying src/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary
copying src/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying src/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying src/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying src/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying src/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying src/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying src/cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying src/cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying src/cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying src/cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_core_reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying src/cobra/test/test_core/test_solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
copying src/cobra/test/test_flux_analysis/test_variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_annotation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_annotation_format.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_notes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying src/cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling
copying src/cobra/test/test_sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling
copying src/cobra/test/test_sampling/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling
copying src/cobra/test/test_sampling/test_achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling
copying src/cobra/test/test_sampling/test_optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling
copying src/cobra/test/test_sampling/test_sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util
copying src/cobra/test/test_util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util
copying src/cobra/test/test_util/test_array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util
copying src/cobra/test/test_util/test_context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util
copying src/cobra/test/test_util/test_solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util
copying src/cobra/test/test_util/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util
copying src/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying src/cobra/test/data/JSON_with_inf_bounds.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying src/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build; python3.8 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.8.6, pytest-4.6.11, py-1.9.0, pluggy-0.13.0
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: tox.ini
plugins: benchmark-3.2.2
collected 373 items
cobra/test/test_manipulation.py ........... [ 2%]
cobra/test/test_medium.py ................. [ 7%]
cobra/test/test_core/test_configuration.py ...... [ 9%]
cobra/test/test_core/test_core_reaction.py ......ss..................... [ 16%]
...................x.... [ 23%]
cobra/test/test_core/test_dictlist.py ...................... [ 29%]
cobra/test/test_core/test_gene.py . [ 29%]
cobra/test/test_core/test_group.py .. [ 30%]
cobra/test/test_core/test_metabolite.py ...ss.ss. [ 32%]
cobra/test/test_core/test_model.py ..................................... [ 42%]
............................s..s.ss. [ 52%]
cobra/test/test_core/test_solution.py .ss [ 52%]
cobra/test/test_flux_analysis/test_deletion.py ....s..... [ 55%]
cobra/test/test_flux_analysis/test_fastcc.py .... [ 56%]
cobra/test/test_flux_analysis/test_geometric.py .. [ 57%]
cobra/test/test_flux_analysis/test_moma.py . [ 57%]
cobra/test/test_flux_analysis/test_parsimonious.py .. [ 57%]
cobra/test/test_flux_analysis/test_reaction.py . [ 58%]
cobra/test/test_flux_analysis/test_room.py .. [ 58%]
cobra/test/test_flux_analysis/test_variability.py ....... [ 60%]
cobra/test/test_flux_analysis/test_deletion.py sss [ 61%]
cobra/test/test_flux_analysis/test_moma.py s [ 61%]
cobra/test/test_flux_analysis/test_deletion.py ..... [ 63%]
cobra/test/test_flux_analysis/test_gapfilling.py . [ 63%]
cobra/test/test_flux_analysis/test_loopless.py ..... [ 64%]
cobra/test/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 66%]
cobra/test/test_flux_analysis/test_variability.py ....... [ 68%]
cobra/test/test_io/test_annotation.py .. [ 68%]
cobra/test/test_io/test_annotation_format.py .. [ 69%]
cobra/test/test_io/test_io_order.py ........................... [ 76%]
cobra/test/test_io/test_json.py s.s. [ 77%]
cobra/test/test_io/test_mat.py ss [ 78%]
cobra/test/test_io/test_notes.py . [ 78%]
cobra/test/test_io/test_pickle.py .s.s [ 79%]
cobra/test/test_io/test_sbml.py ............xxxx.x.x..s.......... [ 88%]
cobra/test/test_io/test_yaml.py .x [ 88%]
cobra/test/test_sampling/test_achr.py ...... [ 90%]
cobra/test/test_sampling/test_optgp.py ...... [ 91%]
cobra/test/test_sampling/test_sampling.py .......... [ 94%]
cobra/test/test_util/test_array.py .s [ 95%]
cobra/test/test_util/test_context.py ... [ 95%]
cobra/test/test_util/test_solver.py .............. [ 99%]
cobra/test/test_util/test_util.py x [100%]
=============================== warnings summary ===============================
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
cobra/core/dictlist.py:215
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="?
if current_length is 0:
cobra/core/gene.py:247
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py:247: DeprecationWarning: invalid escape sequence \(
the_gene_re = re.compile("(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(self.id))
cobra/core/gene.py:267
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py:267: DeprecationWarning: invalid escape sequence \(
"(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(other_gene.id)
cobra/core/reaction.py:43
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:43: DeprecationWarning: invalid escape sequence \s
compartment_finder = re.compile("^\s*(\[[A-Za-z]\])\s*:*")
cobra/flux_analysis/gapfilling.py:13
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/gapfilling.py:13: DeprecationWarning: invalid escape sequence \s
"""Class for performing gap filling.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_escape_ids
/usr/lib/python3/dist-packages/optlang/interface.py:1358: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
if isinstance(stuff, collections.Iterable):
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_gene_knock_out
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_make_lhs_irreversible_reversible
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[glpk]
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_context
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_from_other_model
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_cobra_reaction
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py:545: DeprecationWarning: add_reaction deprecated. Use add_reactions instead
warn("add_reaction deprecated. Use add_reactions instead", DeprecationWarning)
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py:299: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
logger.warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_alternative_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_alternative_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_alternative_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_alternative_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_alternative_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_linear
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_benchmark_medium_mip
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_medium_exports
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_open_exchanges
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::test_open_exchanges
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/minimal_medium.py:104: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning.
medium = pd.Series()
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestErrorsAndExceptions::test_no_names_or_boundary_reactions
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/boundary_types.py:49: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning.
matches = pd.Series(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_1
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -9. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of 2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -10. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -11. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of -2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_2
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACALD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_make_irreversible_irreversible_to_the_other_side
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PFK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_knockout
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of 8.39. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACALDt' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACKr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACONTa' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACONTb' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ACt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ADK1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'AKGDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'AKGt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ALCD2x' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ATPS4r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'CO2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'CS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'CYTBD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'D_LACt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ENO' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ETOHt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_ac_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_acald_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_akg_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_co2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_for_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_fru_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_fum_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_h_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_o2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_pi_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'EX_succ_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FBA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FBP' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FORt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FORti' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FRD7' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FRUpts2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FUM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'FUMt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'G6PDH2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GAPD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GLCpts' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GLNS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GLNabc' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GLUDy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GLUN' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GLUSy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GLUt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'GND' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'H2Ot' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ICDHyr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ICL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'LDH_D' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'MALS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'MALt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'MDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ME1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'ME2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'NADH16' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'NADTRHD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'NH4t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'O2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PFK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PFL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PGI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PGK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PGL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PGM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PIt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PPC' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PPCK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PPS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PTAr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PYK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'PYRt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'RPE' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'RPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'SUCCt3' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'SUCDi' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'SUCOAS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'TALA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'THD2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'TKT1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'TKT2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:247: DeprecationWarning: You are constraining the reaction 'TPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACALDt' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACKr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACONTa' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACONTb' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ACt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ADK1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'AKGDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'AKGt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ALCD2x' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ATPM' to a fixed flux value of -91.61. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ATPS4r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'CO2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'CS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'CYTBD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'D_LACt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ENO' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ETOHt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_ac_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_acald_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_akg_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_co2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_for_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_fru_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_fum_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of -110.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_h_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_o2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_pi_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'EX_succ_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FBA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FBP' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FORt2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FORti' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FRD7' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FRUpts2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FUM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'FUMt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'G6PDH2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GAPD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GLCpts' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GLNS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GLNabc' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GLUDy' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GLUN' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GLUSy' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GLUt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'GND' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'H2Ot' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ICDHyr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ICL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'LDH_D' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'MALS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'MALt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'MDH' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ME1' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'ME2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'NADH16' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'NADTRHD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'NH4t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'O2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PFL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PGI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PGK' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PGL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PGM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PIt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PPC' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PPCK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PPS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PTAr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PYK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'PYRt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'RPE' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'RPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'SUCCt3' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'SUCDi' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'SUCOAS' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'TALA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'THD2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'TKT1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'TKT2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:280: DeprecationWarning: You are constraining the reaction 'TPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py:618: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead
warn(
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_gapfilling.py::test_gapfilling
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/group.py:109: UserWarning: need to pass in a list
warn("need to pass in a list")
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py:233: UserWarning: Use cobra.manipulation.remove_genes instead
warn("Use cobra.manipulation.remove_genes instead")
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py:321: DeprecationWarning: use model.merge instead
warn("use model.merge instead", DeprecationWarning)
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py:331: DeprecationWarning: use model.merge instead
warn("use model.merge instead", DeprecationWarning)
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py::test_load_json_model
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py::test_read_pickle[load_function0]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Gz]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Gz]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Bz2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Bz2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[cobra]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_filehandle
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_from_sbml_string
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py::test_load_yaml_model
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/solver.py:430: UserWarning: solver status is 'infeasible'
warn("solver status is '{}'".format(status), UserWarning)
-- Docs: https://docs.pytest.org/en/latest/warnings.html
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------------------------------------------------------------------------------------------------------------------------- benchmark: 38 tests --------------------------------------------------------------------------------------------------------------------------
Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[cplex] 23.5215 (1.0) 49.6805 (1.0) 24.1997 (1.0) 1.6529 (1.0) 24.0020 (1.0) 0.2645 (1.01) 18;51 41,322.8787 (1.0) 1035 1
test_subtract_metabolite_benchmark[gurobi] 23.5587 (1.00) 56.3860 (1.13) 24.2469 (1.00) 1.6615 (1.01) 24.0803 (1.00) 0.2757 (1.06) 14;39 41,242.3095 (1.00) 1041 1
test_subtract_metabolite_benchmark[glpk] 23.8195 (1.01) 63.2219 (1.27) 24.4637 (1.01) 1.8025 (1.09) 24.3001 (1.01) 0.2608 (1.0) 13;39 40,876.8115 (0.99) 988 1
test_change_objective_benchmark[gurobi] 1,269.9552 (53.99) 1,353.3123 (27.24) 1,292.5137 (53.41) 16.3094 (9.87) 1,284.6962 (53.52) 26.9338 (103.29) 328;2 773.6862 (0.02) 1229 1
test_change_objective_benchmark[glpk] 1,272.5294 (54.10) 1,383.7740 (27.85) 1,298.3057 (53.65) 16.5620 (10.02) 1,291.2154 (53.80) 26.9478 (103.34) 368;2 770.2346 (0.02) 1211 1
test_change_objective_benchmark[cplex] 1,274.6528 (54.19) 1,403.5739 (28.25) 1,296.7300 (53.58) 17.1711 (10.39) 1,288.3730 (53.68) 27.4451 (105.25) 320;6 771.1705 (0.02) 1231 1
test_achr_sample_benchmark 1,444.0157 (61.39) 1,771.0999 (35.65) 1,468.2846 (60.67) 22.4585 (13.59) 1,458.5964 (60.77) 29.1131 (111.64) 41;2 681.0669 (0.02) 391 1
test_add_remove_reaction_benchmark[gurobi] 2,016.4438 (85.73) 2,714.3508 (54.64) 2,060.8880 (85.16) 46.2156 (27.96) 2,056.8054 (85.69) 36.1390 (138.59) 11;6 485.2277 (0.01) 338 1
test_add_remove_reaction_benchmark[cplex] 2,019.9642 (85.88) 2,751.4733 (55.38) 2,094.6413 (86.56) 144.6112 (87.49) 2,060.9312 (85.86) 42.3193 (162.29) 19;21 477.4087 (0.01) 334 1
test_add_remove_reaction_benchmark[glpk] 2,028.4206 (86.24) 5,250.1410 (105.68) 2,079.8595 (85.95) 177.4486 (107.36) 2,067.1263 (86.12) 44.1261 (169.21) 3;7 480.8017 (0.01) 335 1
test_optgp_sample_benchmark 2,086.5425 (88.71) 2,390.6268 (48.12) 2,115.3340 (87.41) 23.6194 (14.29) 2,118.5242 (88.26) 32.3271 (123.97) 63;2 472.7386 (0.01) 397 1
test_loopless_benchmark_after 7,050.2199 (299.74) 7,495.7237 (150.88) 7,105.2780 (293.61) 40.4685 (24.48) 7,102.4504 (295.91) 22.0165 (84.43) 8;5 140.7404 (0.00) 138 1
test_loopless_benchmark_before 20,977.9367 (891.86) 27,719.8553 (557.96) 21,500.1829 (888.45) 1,163.1212 (703.69) 21,229.9172 (884.50) 205.3827 (787.60) 2;4 46.5112 (0.00) 34 1
test_benchmark_medium_mip 39,567.8282 (>1000.0) 40,104.5717 (807.25) 39,671.1832 (>1000.0) 114.4485 (69.24) 39,639.9647 (>1000.0) 86.3895 (331.29) 3;3 25.2072 (0.00) 25 1
test_benchmark_medium_linear 41,095.6182 (>1000.0) 46,875.9276 (943.55) 42,206.6118 (>1000.0) 1,450.9379 (877.83) 41,635.1482 (>1000.0) 1,003.6305 (>1000.0) 2;2 23.6930 (0.00) 24 1
test_single_reaction_deletion_benchmark[glpk] 85,316.4010 (>1000.0) 88,188.4508 (>1000.0) 87,020.0328 (>1000.0) 1,041.5110 (630.12) 87,470.3825 (>1000.0) 1,893.1227 (>1000.0) 5;0 11.4916 (0.00) 11 1
test_copy_benchmark[gurobi] 89,643.8472 (>1000.0) 93,788.2774 (>1000.0) 91,041.7400 (>1000.0) 1,674.2327 (>1000.0) 90,307.7982 (>1000.0) 2,834.9236 (>1000.0) 3;0 10.9840 (0.00) 11 1
test_copy_benchmark[glpk] 89,701.8537 (>1000.0) 93,837.3022 (>1000.0) 90,998.4813 (>1000.0) 1,611.6496 (975.06) 90,354.1185 (>1000.0) 2,400.5435 (>1000.0) 3;0 10.9892 (0.00) 11 1
test_copy_benchmark[cplex] 89,742.3141 (>1000.0) 426,936.8947 (>1000.0) 119,223.6263 (>1000.0) 96,920.3503 (>1000.0) 90,253.2078 (>1000.0) 3,887.3721 (>1000.0) 1;1 8.3876 (0.00) 12 1
test_deepcopy_benchmark 123,026.8031 (>1000.0) 125,771.4406 (>1000.0) 124,496.6984 (>1000.0) 1,336.5413 (808.61) 125,150.9674 (>1000.0) 2,586.4327 (>1000.0) 4;0 8.0323 (0.00) 9 1
test_single_gene_deletion_fba_benchmark[glpk] 192,422.9674 (>1000.0) 217,857.4763 (>1000.0) 204,061.0574 (>1000.0) 9,330.2267 (>1000.0) 202,936.5487 (>1000.0) 11,175.8579 (>1000.0) 2;0 4.9005 (0.00) 5 1
test_fastcc_benchmark[glpk] 233,970.9774 (>1000.0) 239,465.6390 (>1000.0) 235,255.2004 (>1000.0) 2,370.2289 (>1000.0) 234,211.0164 (>1000.0) 1,886.2803 (>1000.0) 1;1 4.2507 (0.00) 5 1
test_single_gene_deletion_linear_moma_benchmark[glpk] 420,383.6173 (>1000.0) 423,953.8200 (>1000.0) 422,152.6779 (>1000.0) 1,760.6735 (>1000.0) 422,180.4775 (>1000.0) 3,495.7379 (>1000.0) 3;0 2.3688 (0.00) 5 1
test_optgp_init_benchmark 444,728.0765 (>1000.0) 451,533.2542 (>1000.0) 448,057.2656 (>1000.0) 3,114.2023 (>1000.0) 447,741.6277 (>1000.0) 5,878.8881 (>1000.0) 2;0 2.2319 (0.00) 5 1
test_achr_init_benchmark 447,181.5452 (>1000.0) 456,313.2636 (>1000.0) 450,982.7279 (>1000.0) 3,387.5573 (>1000.0) 450,429.9574 (>1000.0) 3,876.0975 (>1000.0) 2;0 2.2174 (0.00) 5 1
test_add_metabolite_benchmark[cplex] 551,826.1008 (>1000.0) 552,443.2473 (>1000.0) 552,133.8359 (>1000.0) 239.2416 (144.74) 552,060.8835 (>1000.0) 339.9709 (>1000.0) 2;0 1.8112 (0.00) 5 1
test_add_metabolite_benchmark[glpk] 553,302.6159 (>1000.0) 556,571.0925 (>1000.0) 554,423.4715 (>1000.0) 1,269.8696 (768.28) 554,195.7431 (>1000.0) 1,303.8591 (>1000.0) 1;0 1.8037 (0.00) 5 1
test_add_metabolite_benchmark[gurobi] 554,834.6378 (>1000.0) 557,000.6743 (>1000.0) 556,473.5152 (>1000.0) 929.3381 (562.25) 556,929.8565 (>1000.0) 817.7990 (>1000.0) 1;1 1.7970 (0.00) 5 1
test_flux_variability_loopless_benchmark[glpk] 620,558.8952 (>1000.0) 677,638.4227 (>1000.0) 648,612.1580 (>1000.0) 21,199.8677 (>1000.0) 651,969.6265 (>1000.0) 27,154.9989 (>1000.0) 2;0 1.5418 (0.00) 5 1
test_double_gene_deletion_benchmark 658,114.7388 (>1000.0) 703,783.3519 (>1000.0) 675,623.9958 (>1000.0) 18,928.2144 (>1000.0) 667,057.6148 (>1000.0) 28,454.9333 (>1000.0) 1;0 1.4801 (0.00) 5 1
test_single_gene_deletion_linear_room_benchmark[glpk] 735,049.6650 (>1000.0) 739,978.7195 (>1000.0) 737,186.5176 (>1000.0) 1,862.5560 (>1000.0) 737,021.0886 (>1000.0) 2,472.1706 (>1000.0) 2;0 1.3565 (0.00) 5 1
test_geometric_fba_benchmark[glpk] 909,932.9188 (>1000.0) 918,936.7779 (>1000.0) 912,749.4015 (>1000.0) 3,615.2811 (>1000.0) 911,079.4477 (>1000.0) 3,685.5973 (>1000.0) 1;0 1.0956 (0.00) 5 1
test_pfba_benchmark[glpk] 1,495,038.3268 (>1000.0) 1,500,176.8656 (>1000.0) 1,497,635.1030 (>1000.0) 1,854.9552 (>1000.0) 1,497,374.5346 (>1000.0) 1,989.7455 (>1000.0) 2;0 0.6677 (0.00) 5 1
test_copy_benchmark_large_model[glpk] 2,094,389.0885 (>1000.0) 2,669,297.8293 (>1000.0) 2,310,206.1912 (>1000.0) 293,852.7235 (>1000.0) 2,098,614.2121 (>1000.0) 515,365.7151 (>1000.0) 1;0 0.4329 (0.00) 5 1
test_copy_benchmark_large_model[cplex] 2,095,449.2353 (>1000.0) 2,901,575.8820 (>1000.0) 2,402,781.0656 (>1000.0) 418,819.0274 (>1000.0) 2,098,837.1745 (>1000.0) 742,031.9738 (>1000.0) 1;0 0.4162 (0.00) 5 1
test_copy_benchmark_large_model[gurobi] 2,095,745.4853 (>1000.0) 3,104,328.2300 (>1000.0) 2,476,813.4326 (>1000.0) 520,642.6994 (>1000.0) 2,099,098.9581 (>1000.0) 917,919.1794 (>1000.0) 1;0 0.4037 (0.00) 5 1
test_double_reaction_deletion_benchmark 3,164,395.2094 (>1000.0) 3,196,502.8942 (>1000.0) 3,178,466.6643 (>1000.0) 13,022.8042 (>1000.0) 3,176,766.2466 (>1000.0) 21,000.2828 (>1000.0) 2;0 0.3146 (0.00) 5 1
test_flux_variability_benchmark[glpk] 9,995,145.8238 (>1000.0) 10,070,467.8707 (>1000.0) 10,015,058.0294 (>1000.0) 31,245.8090 (>1000.0) 10,001,794.9566 (>1000.0) 22,987.2847 (>1000.0) 1;1 0.0998 (0.00) 5 1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
====== 339 passed, 25 skipped, 9 xfailed, 1322 warnings in 471.72 seconds ======
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/configuration.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/singleton.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/dictlist.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/gene.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/species.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/object.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/metabolite.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/formula.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/model.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/group.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/reaction.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/solution.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/schema_v1.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/dict.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/json.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/mat.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/sbml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/yaml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/delete.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/modify.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/validate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/annotations.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/achr.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/optgp.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/sampling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/__pycache__/summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/summary/__pycache__/model_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/JSON_with_inf_bounds.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_configuration.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_core_reaction.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_dictlist.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_gene.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_group.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_metabolite.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_model.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_solution.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/test_variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_deletion.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_fastcc.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_gapfilling.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_geometric.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_loopless.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_moma.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_parsimonious.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_phenotype_phase_plane.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_reaction.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_room.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_flux_analysis/__pycache__/test_variability.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation_format.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_notes.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation_format.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_io_order.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_json.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_mat.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_notes.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_pickle.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_sbml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_yaml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/test_achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/test_optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/test_sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/__pycache__/test_achr.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/__pycache__/test_optgp.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_sampling/__pycache__/test_sampling.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/test_array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/test_context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/test_solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/__pycache__/test_array.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/__pycache__/test_context.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/__pycache__/test_solver.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_util/__pycache__/test_util.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_medium.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/array.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/context.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/solver.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/util.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/exceptions.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/exceptions.py to exceptions.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/configuration.py to configuration.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py to dictlist.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/formula.py to formula.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/gene.py to gene.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/group.py to group.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/metabolite.py to metabolite.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/model.py to model.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/object.py to object.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/singleton.py to singleton.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/solution.py to solution.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/species.py to species.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/room.py to room.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/dict.py to dict.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/json.py to json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/mat.py to mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/sbml.py to sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/yaml.py to yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/delete.py to delete.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/modify.py to modify.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/validate.py to validate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/annotations.py to annotations.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/achr.py to achr.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/optgp.py to optgp.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/sampling.py to sampling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/summary/summary.py to summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_medium.py to test_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_configuration.py to test_configuration.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_core_reaction.py to test_core_reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_dictlist.py to test_dictlist.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_gene.py to test_gene.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_group.py to test_group.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_metabolite.py to test_metabolite.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_model.py to test_model.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_solution.py to test_solution.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_deletion.py to test_deletion.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_fastcc.py to test_fastcc.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_gapfilling.py to test_gapfilling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_geometric.py to test_geometric.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_loopless.py to test_loopless.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_moma.py to test_moma.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_parsimonious.py to test_parsimonious.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_phenotype_phase_plane.py to test_phenotype_phase_plane.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_reaction.py to test_reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_room.py to test_room.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_flux_analysis/test_variability.py to test_variability.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation.py to test_annotation.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation_format.py to test_annotation_format.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_io_order.py to test_io_order.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_mat.py to test_mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_notes.py to test_notes.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_pickle.py to test_pickle.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py to test_sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_yaml.py to test_yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_json.py to test_json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/test_achr.py to test_achr.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/test_optgp.py to test_optgp.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_sampling/test_sampling.py to test_sampling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/test_array.py to test_array.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/test_context.py to test_context.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/test_solver.py to test_solver.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_util/test_util.py to test_util.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/array.py to array.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/context.py to context.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/solver.py to solver.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/util.py to util.cpython-38.pyc
running install_egg_info
running egg_info
creating src/cobra.egg-info
writing src/cobra.egg-info/PKG-INFO
writing dependency_links to src/cobra.egg-info/dependency_links.txt
writing requirements to src/cobra.egg-info/requires.txt
writing top-level names to src/cobra.egg-info/top_level.txt
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest file 'src/cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'src/cobra.egg-info/SOURCES.txt'
Copying src/cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra-0.19.0.egg-info
Skipping SOURCES.txt
running install_scripts
/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="?
/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py:261: SyntaxWarning: "is" with a literal. Did you mean "=="?
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -a -O--buildsystem=pybuild
dh_strip -a -a -O--buildsystem=pybuild
dh_makeshlibs -a -a -O--buildsystem=pybuild
dh_shlibdeps -a -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.19.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../python-cobra_0.19.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-11-07T18:07:52Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.19.0-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Thu, 05 Nov 2020 22:12:34 +0530
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.19.0-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
python3-cobra - constraint-based modeling of biological networks with Python 3
Closes: 972812
Changes:
python-cobra (0.19.0-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* New upstream version
* importlib_resources is not packaged for Debian thus ignore the test that
needs this module
* pytest.mark.skip did not worked that way. :-(
* Really exclude tests requiring importlib_resources
.
[ Nilesh Patra ]
* Do not use python3-all (Closes: #972812)
- sbml only builds its python extension for the default python
* xfail test_show_versions which xpass during autopkgtest
* Adapt data location with new version
* Rename overrides
Checksums-Sha1:
b730236f6379a21f4b3b03863e2c62596620a41b 8503 python-cobra_0.19.0-1_armhf.buildinfo
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python3-cobra_0.19.0-1_armhf.deb
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new Debian package, version 2.0.
size 137008 bytes: control archive=4152 bytes.
1084 bytes, 19 lines control
11024 bytes, 116 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.19.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 789
Depends: python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-pandas (>= 0.17.0), python3-ruamel.yaml, python3-sbml5, python3-six, python3-swiglpk, python3:any, python-cobra-data (= 0.19.0-1), python3-simplejson, python3-tabulate
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: https://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
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Build Architecture: armhf
Build-Space: 26692
Build-Time: 491
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 570
Job: python-cobra_0.19.0-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1078
Source-Version: 0.19.0-1
Space: 26692
Status: successful
Version: 0.19.0-1
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Finished at 2020-11-07T18:07:52Z
Build needed 00:17:58, 26692k disk space