python-cobra →
0.18.1-2 →
armhf → 2020-08-23 12:37:19
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| python-cobra 0.18.1-2 (armhf) Sun, 23 Aug 2020 12:00:41 +0000 |
+==============================================================================+
Package: python-cobra
Version: 0.18.1-2
Source Version: 0.18.1-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-9ae50a1d-9dac-410b-9b77-7264f3aac7c5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 24s (1020 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2571 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-cobra 0.18.1-2 (dsc) [2927 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-cobra 0.18.1-2 (tar) [2560 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-cobra 0.18.1-2 (diff) [7856 B]
Fetched 2571 kB in 1s (3514 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-mkf4E4/python-cobra-0.18.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-mkf4E4' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-wisEgH/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-wisEgH/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-wisEgH/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2743 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12502 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-wisEgH/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Sources [677 B]
Get:5 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ Packages [749 B]
Fetched 2759 B in 1s (3529 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates cpp-10 cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
g++-10 gcc-10 gcc-10-base gettext gettext-base groff-base intltool-debian
libamd2 libarchive-zip-perl libasan6 libatomic1 libblas-dev libblas3
libbrotli1 libbtf1 libcamd2 libcc1-0 libccolamd2 libcholmod3 libcolamd2
libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfreetype6 libgcc-10-dev libgcc-s1
libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libgomp1 libgraphblas3 libicu67 libjs-jquery libjs-jquery-ui libklu1
liblapack-dev liblapack3 libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5
libmongoose2 libpipeline1 libpng16-16 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal
libpython3.8-stdlib librbio2 libsbml5 libsigsegv2 libsliplu1 libspqr2
libssl1.1 libstdc++-10-dev libstdc++6 libsub-override-perl
libsuitesparse-dev libsuitesparseconfig5 libtool libubsan1 libuchardet0
libumfpack5 libxml2 m4 man-db mime-support node-jquery openssl po-debconf
python-matplotlib-data python-pip-whl python3 python3-all python3-all-dev
python3-atomicwrites python3-attr python3-certifi python3-chardet
python3-cpuinfo python3-cycler python3-dateutil python3-depinfo python3-dev
python3-distutils python3-future python3-idna python3-importlib-metadata
python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-optlang python3-packaging python3-pandas python3-pandas-lib
python3-pip python3-pipdeptree python3-pkg-resources python3-pluggy
python3-py python3-pyparsing python3-pyrsistent python3-pytest
python3-pytest-benchmark python3-requests python3-ruamel.yaml
python3-ruamel.yaml.clib python3-sbml5 python3-setuptools python3-simplejson
python3-six python3-swiglpk python3-sympy python3-tabulate python3-tz
python3-urllib3 python3-wcwidth python3-wheel python3-zipp python3.8
python3.8-dev python3.8-minimal swig swig4.0 ttf-bitstream-vera zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales cython-doc
dh-make gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev groff
liblapack-doc libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc
libmpfr-dev libjs-jquery-ui-docs libstdc++-10-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
python-cycler-doc python-future-doc python-jsonschema-doc dvipng ffmpeg
ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-nose python3-pyqt5 python3-scipy python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-numpy-dbg
python-pandas-doc python3-statsmodels subversion python-pyparsing-doc
python3-cryptography python3-openssl python3-socks python-requests-doc
python-setuptools-doc texlive-fonts-extra python-sympy-doc python3.8-venv
python3.8-doc binfmt-support swig-doc swig-examples swig4.0-examples
swig4.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl
python3-pil python3-tk python3-scipy python3-numexpr python3-tables
python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib
python3-lxml python3-elasticsearch python3-freezegun python3-pygal
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
libblas-dev libblas3 libbrotli1 libbtf1 libcamd2 libccolamd2 libcholmod3
libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5
libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3
libicu67 libjs-jquery libjs-jquery-ui libklu1 liblapack-dev liblapack3
libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libpipeline1
libpng16-16 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librbio2 libsbml5
libsigsegv2 libsliplu1 libspqr2 libssl1.1 libsub-override-perl
libsuitesparse-dev libsuitesparseconfig5 libtool libuchardet0 libumfpack5
libxml2 m4 man-db mime-support node-jquery openssl po-debconf
python-matplotlib-data python-pip-whl python3 python3-all python3-all-dev
python3-atomicwrites python3-attr python3-certifi python3-chardet
python3-cpuinfo python3-cycler python3-dateutil python3-depinfo python3-dev
python3-distutils python3-future python3-idna python3-importlib-metadata
python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-optlang python3-packaging python3-pandas python3-pandas-lib
python3-pip python3-pipdeptree python3-pkg-resources python3-pluggy
python3-py python3-pyparsing python3-pyrsistent python3-pytest
python3-pytest-benchmark python3-requests python3-ruamel.yaml
python3-ruamel.yaml.clib python3-sbml5 python3-setuptools python3-simplejson
python3-six python3-swiglpk python3-sympy python3-tabulate python3-tz
python3-urllib3 python3-wcwidth python3-wheel python3-zipp python3.8
python3.8-dev python3.8-minimal sbuild-build-depends-python-cobra-dummy swig
swig4.0 ttf-bitstream-vera zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
13 upgraded, 144 newly installed, 0 to remove and 14 not upgraded.
Need to get 112 MB/113 MB of archives.
After this operation, 482 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-wisEgH/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1036 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.0-5+rpi1 [31.7 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.0-5+rpi1 [199 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.0-5+rpi1 [36.1 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.0-5+rpi1 [84.0 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.0-5+rpi1 [8168 B]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.0-5+rpi1 [301 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.0-5+rpi1 [115 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.0-5+rpi1 [6784 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.0-5+rpi1 [1743 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.0-5+rpi1 [683 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.0-5+rpi1 [12.2 MB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.0-5+rpi1 [6245 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.0-5+rpi1 [408 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.5-2 [752 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.5-2 [1628 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.5-2 [1677 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.5-2 [420 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-1 [1318 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.5-1 [78.4 kB]
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Get:61 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.5.2-1 [200 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libsuitesparseconfig5 armhf 1:5.8.1+dfsg-2 [22.6 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libamd2 armhf 1:5.8.1+dfsg-2 [29.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-7 [258 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libbtf1 armhf 1:5.8.1+dfsg-2 [23.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libcamd2 armhf 1:5.8.1+dfsg-2 [29.8 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libccolamd2 armhf 1:5.8.1+dfsg-2 [30.5 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libcolamd2 armhf 1:5.8.1+dfsg-2 [27.4 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-5+rpi1 [231 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libmetis5 armhf 5.1.0.dfsg-7 [133 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libcholmod3 armhf 1:5.8.1+dfsg-2 [212 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libcxsparse3 armhf 1:5.8.1+dfsg-2 [51.6 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libglpk40 armhf 4.65-2 [339 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libgmpxx4ldbl armhf 2:6.2.0+dfsg-6 [22.1 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libgmp-dev armhf 2:6.2.0+dfsg-6 [587 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libgraphblas3 armhf 1:5.8.1+dfsg-2 [4826 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libklu1 armhf 1:5.8.1+dfsg-2 [51.1 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libldl2 armhf 1:5.8.1+dfsg-2 [23.0 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libmongoose2 armhf 1:5.8.1+dfsg-2 [43.3 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libumfpack5 armhf 1:5.8.1+dfsg-2 [127 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf librbio2 armhf 1:5.8.1+dfsg-2 [31.9 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libspqr2 armhf 1:5.8.1+dfsg-2 [68.7 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libsliplu1 armhf 1:5.8.1+dfsg-2 [48.1 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libsuitesparse-dev armhf 1:5.8.1+dfsg-2 [5224 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libglpk-dev armhf 4.65-2 [379 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg-4 [309 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg-4 [3612 B]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.5-2 [1363 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.5-2 [3053 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-3 [1068 B]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libsbml5 armhf 5.18.0+dfsg-2+b1 [1691 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.2.2-1 [4146 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python-pip-whl all 20.1.1-2 [1887 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.5-2 [515 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-3 [1064 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.4.0-1 [10.2 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 19.3.0-5 [43.4 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.4.5.1-1 [151 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 46.1.3-1 [183 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-cpuinfo all 5.0.0-2 [19.0 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-1 [16.8 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.8.1-4 [81.6 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 46.1.3-1 [382 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-wheel all 0.34.2-1 [24.0 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-pip all 20.1.1-2 [295 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-pipdeptree armhf 0.13.2-1 [15.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-depinfo armhf 1.5.3-1 [5772 B]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-future all 0.18.2-4 [348 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-pyrsistent armhf 0.15.5-1+b1 [57.7 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-jsonschema all 3.2.0-3 [46.3 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.0.1-3 [245 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.18.4-1 [3037 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.2.2-1 [4620 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-mpmath all 1.1.0-2 [417 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-swiglpk armhf 4.65.0-2+b1 [70.5 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-sympy all 1.6.1-1 [3925 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf python3-optlang all 1.4.4-2 [67.7 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.4-1 [30.4 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2020.1-2 [34.6 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg2-5+rpi1 [2956 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg2-5+rpi1 [1984 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-5 [22.1 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.8.1-4 [86.9 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.11-1 [268 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-benchmark all 3.2.2-2 [46.4 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.9-1 [105 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.23.0+dfsg-2 [71.4 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf python3-ruamel.yaml.clib armhf 0.2.0-3 [117 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf python3-ruamel.yaml all 0.16.10-2 [110 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf swig4.0 armhf 4.0.1-5 [1236 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf swig all 4.0.1-5 [329 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf python3-sbml5 armhf 5.18.0+dfsg-2+b1 [2867 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf python3-simplejson armhf 3.17.0-1 [58.8 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf python3-tabulate all 0.8.2-1.1 [32.2 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libcc1-0:armhf (10.2.0-5+rpi1) ...
Setting up cpp-10 (10.2.0-5+rpi1) ...
Setting up libblas-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up node-jquery (3.5.1+dfsg-4) ...
Setting up librbio2:armhf (1:5.8.1+dfsg-2) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libamd2:armhf (1:5.8.1+dfsg-2) ...
Setting up libgraphblas3:armhf (1:5.8.1+dfsg-2) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up swig (4.0.1-5) ...
Setting up libgmp-dev:armhf (2:6.2.0+dfsg-6) ...
Setting up libcolamd2:armhf (1:5.8.1+dfsg-2) ...
Setting up libtool (2.4.6-14) ...
Setting up libgcc-10-dev:armhf (10.2.0-5+rpi1) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up python3-wheel (0.34.2-1) ...
Setting up python3-tz (2020.1-2) ...
Setting up python3-atomicwrites (1.4.0-1) ...
Setting up libsliplu1:armhf (1:5.8.1+dfsg-2) ...
Setting up python3-six (1.15.0-1) ...
Setting up python3-simplejson (3.17.0-1) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libcamd2:armhf (1:5.8.1+dfsg-2) ...
Setting up libmongoose2:armhf (1:5.8.1+dfsg-2) ...
Setting up python3-wcwidth (0.1.9+dfsg1-2) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up libfreetype6:armhf (2.10.2+dfsg-3) ...
Setting up python3-certifi (2020.4.5.1-1) ...
Setting up libglpk40:armhf (4.65-2) ...
Setting up libsbml5 (5.18.0+dfsg-2+b1) ...
Setting up libpython3.8:armhf (3.8.5-2) ...
Setting up python3-cycler (0.10.0-3) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up python3-idna (2.10-1) ...
Setting up cython3 (0.29.21-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up python3-cpuinfo (5.0.0-2) ...
Setting up gcc-10 (10.2.0-5+rpi1) ...
Setting up autoconf (2.69-11.1) ...
Setting up python3-urllib3 (1.25.9-1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up python3-pyrsistent:armhf (0.15.5-1+b1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libklu1:armhf (1:5.8.1+dfsg-2) ...
Setting up libccolamd2:armhf (1:5.8.1+dfsg-2) ...
Setting up python3-dateutil (2.8.1-4) ...
Setting up python-pip-whl (20.1.1-2) ...
Setting up libjs-jquery (3.5.1+dfsg-4) ...
Setting up python3-mpmath (1.1.0-2) ...
/usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:892: SyntaxWarning: "is" with a literal. Did you mean "=="?
if other is 0:
/usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:986: SyntaxWarning: "is" with a literal. Did you mean "=="?
if other is 0:
Setting up python3-lib2to3 (3.8.5-1) ...
Setting up python3-swiglpk (4.65.0-2+b1) ...
Setting up libcholmod3:armhf (1:5.8.1+dfsg-2) ...
Setting up python3-pkg-resources (46.1.3-1) ...
Setting up automake (1:1.16.2-3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.5-1) ...
Setting up dh-python (4.20200315) ...
Setting up python3-more-itertools (4.2.0-3) ...
Setting up python3-sympy (1.6.1-1) ...
Setting up python3-attr (19.3.0-5) ...
Setting up libspqr2:armhf (1:5.8.1+dfsg-2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libstdc++-10-dev:armhf (10.2.0-5+rpi1) ...
Setting up g++-10 (10.2.0-5+rpi1) ...
Setting up python3-setuptools (46.1.3-1) ...
Setting up python3-py (1.8.1-4) ...
Setting up python3-ruamel.yaml.clib (0.2.0-3) ...
Setting up python3-tabulate (0.8.2-1.1) ...
Setting up python3-all (3.8.2-3) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-sbml5 (5.18.0+dfsg-2+b1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-packaging (20.4-1) ...
Setting up python3-chardet (3.0.4-7) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-5) ...
Setting up libumfpack5:armhf (1:5.8.1+dfsg-2) ...
Setting up libpython3.8-dev:armhf (3.8.5-2) ...
Setting up python3-requests (2.23.0+dfsg-2) ...
Setting up python3-kiwisolver (1.0.1-3) ...
Setting up python3-pip (20.1.1-2) ...
Setting up python3-numpy (1:1.18.4-1) ...
Setting up python3.8-dev (3.8.5-2) ...
Setting up python3-ruamel.yaml (0.16.10-2) ...
Setting up python3-future (0.18.2-4) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-pipdeptree (0.13.2-1) ...
Setting up python3-optlang (1.4.4-2) ...
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
Setting up python3-matplotlib (3.2.2-1) ...
Setting up libpython3-dev:armhf (3.8.2-3) ...
Setting up python3-importlib-metadata (1.6.0-2) ...
Setting up libsuitesparse-dev:armhf (1:5.8.1+dfsg-2) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-pandas-lib (0.25.3+dfsg2-5+rpi1) ...
Setting up python3-pandas (0.25.3+dfsg2-5+rpi1) ...
Setting up python3-jsonschema (3.2.0-3) ...
Setting up libpython3-all-dev:armhf (3.8.2-3) ...
Setting up libglpk-dev:armhf (4.65-2) ...
Setting up python3-dev (3.8.2-3) ...
Setting up python3-depinfo (1.5.3-1) ...
Setting up python3-pluggy (0.13.0-5) ...
Setting up python3-all-dev (3.8.2-3) ...
Setting up python3-pytest (4.6.11-1) ...
Setting up python3-pytest-benchmark (3.2.2-2) ...
Setting up debhelper (13.2) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-5+rpi1 gcc-10_10.2.0-5+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-1+b1 aptitude-common_0.8.13-1 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1+rpi1 binutils-arm-linux-gnueabihf_2.35-1+rpi1 binutils-common_2.35-1+rpi1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.2.0-5+rpi1 cython3_0.29.21-1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 fonts-lyx_2.3.5.2-1 g++_4:10.1.0-1+rpi1 g++-10_10.2.0-5+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.2.0-5+rpi1 gcc-10-base_10.2.0-5+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libamd2_1:5.8.1+dfsg-2 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.2.0-5+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-5+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-1+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36-2 libboost-iostreams1.71.0_1.71.0-6+b1 libbrotli1_1.0.7-7 libbtf1_1:5.8.1+dfsg-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcamd2_1:5.8.1+dfsg-2 libcap-ng0_0.7.9-2.2 libcap2_1:2.42-2 libcap2-bin_1:2.42-2 libcc1-0_10.2.0-5+rpi1 libccolamd2_1:5.8.1+dfsg-2 libcholmod3_1:5.8.1+dfsg-2 libcolamd2_1:5.8.1+dfsg-2 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1+rpi1 libctf0_2.35-1+rpi1 libcwidget4_0.5.18-5 libcxsparse3_1:5.8.1+dfsg-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdpkg-perl_1.20.5+rpi1 libelf1_0.180-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libfreetype6_2.10.2+dfsg-3 libgcc-10-dev_10.2.0-5+rpi1 libgcc-s1_10.2.0-5+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.2.0-5+rpi1 libglib2.0-0_2.64.4-1 libglpk-dev_4.65-2 libglpk40_4.65-2 libgmp-dev_2:6.2.0+dfsg-6 libgmp10_2:6.2.0+dfsg-6 libgmpxx4ldbl_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-5+rpi1 libgpg-error0_1.38-2 libgraphblas3_1:5.8.1+dfsg-2 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjs-jquery_3.5.1+dfsg-4 libjs-jquery-ui_1.12.1+dfsg-5 libklu1_1:5.8.1+dfsg-2 libksba8_1.4.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 libldl2_1:5.8.1+dfsg-2 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmetis5_5.1.0.dfsg-7 libmongoose2_1:5.8.1+dfsg-2 libmount1_2.36-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-cap_1:2.42-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-2 libpython3-all-dev_3.8.2-3 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.8_3.8.5-2 libpython3.8-dev_3.8.5-2 libpython3.8-minimal_3.8.5-2 libpython3.8-stdlib_3.8.5-2 librbio2_1:5.8.1+dfsg-2 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libsbml5_5.18.0+dfsg-2+b1 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsliplu1_1:5.8.1+dfsg-2 libsmartcols1_2.36-2 libspqr2_1:5.8.1+dfsg-2 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 libsub-override-perl_0.09-2 libsuitesparse-dev_1:5.8.1+dfsg-2 libsuitesparseconfig5_1:5.8.1+dfsg-2 libsystemd0_245.6-2+rpi1+b1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libumfpack5_1:5.8.1+dfsg-2 libunistring2_0.9.10-4 libuuid1_2.36-2 libxapian30_1.4.15-1 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 node-jquery_3.5.1+dfsg-4 openssl_1.1.1g-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python-matplotlib-data_3.2.2-1 python-pip-whl_20.1.1-2 python3_3.8.2-3 python3-all_3.8.2-3 python3-all-dev_3.8.2-3 python3-atomicwrites_1.4.0-1 python3-attr_19.3.0-5 python3-certifi_2020.4.5.1-1 python3-chardet_3.0.4-7 python3-cpuinfo_5.0.0-2 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-4 python3-depinfo_1.5.3-1 python3-dev_3.8.2-3 python3-distutils_3.8.5-1 python3-future_0.18.2-4 python3-idna_2.10-1 python3-importlib-metadata_1.6.0-2 python3-jsonschema_3.2.0-3 python3-kiwisolver_1.0.1-3 python3-lib2to3_3.8.5-1 python3-matplotlib_3.2.2-1 python3-minimal_3.8.2-3 python3-more-itertools_4.2.0-3 python3-mpmath_1.1.0-2 python3-numpy_1:1.18.4-1 python3-optlang_1.4.4-2 python3-packaging_20.4-1 python3-pandas_0.25.3+dfsg2-5+rpi1 python3-pandas-lib_0.25.3+dfsg2-5+rpi1 python3-pip_20.1.1-2 python3-pipdeptree_0.13.2-1 python3-pkg-resources_46.1.3-1 python3-pluggy_0.13.0-5 python3-py_1.8.1-4 python3-pyparsing_2.4.7-1 python3-pyrsistent_0.15.5-1+b1 python3-pytest_4.6.11-1 python3-pytest-benchmark_3.2.2-2 python3-requests_2.23.0+dfsg-2 python3-ruamel.yaml_0.16.10-2 python3-ruamel.yaml.clib_0.2.0-3 python3-sbml5_5.18.0+dfsg-2+b1 python3-setuptools_46.1.3-1 python3-simplejson_3.17.0-1 python3-six_1.15.0-1 python3-swiglpk_4.65.0-2+b1 python3-sympy_1.6.1-1 python3-tabulate_0.8.2-1.1 python3-tz_2020.1-2 python3-urllib3_1.25.9-1 python3-wcwidth_0.1.9+dfsg1-2 python3-wheel_0.34.2-1 python3-zipp_1.0.0-3 python3.8_3.8.5-2 python3.8-dev_3.8.5-2 python3.8-minimal_3.8.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5 swig4.0_4.0.1-5 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 ttf-bitstream-vera_1.10-8 tzdata_2020a-1 util-linux_2.36-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Mb8z5zlO/trustedkeys.kbx': General error
gpgv: Signature made Sat Aug 8 13:53:13 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.18.1-2.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.18.1.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.18.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-9ae50a1d-9dac-410b-9b77-7264f3aac7c5
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.18.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.8 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
copying cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
copying cobra/core/summary/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_core_reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
copying cobra/test/test_core/test_solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_annotation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_annotation_format.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_notes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/test_metabolite_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/test_model_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
copying cobra/test/test_core/test_summary/test_reaction_summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build; python3.8 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.8.5, pytest-4.6.11, py-1.8.1, pluggy-0.13.0
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
plugins: benchmark-3.2.2
collected 295 items
cobra/test/test_manipulation.py ........... [ 3%]
cobra/test/test_medium.py ................. [ 9%]
cobra/test/test_core/test_configuration.py ...... [ 11%]
cobra/test/test_core/test_core_reaction.py ......ss..................... [ 21%]
...................x.... [ 29%]
cobra/test/test_core/test_dictlist.py ...................... [ 36%]
cobra/test/test_core/test_gene.py . [ 37%]
cobra/test/test_core/test_group.py .. [ 37%]
cobra/test/test_core/test_metabolite.py ...ss.ss. [ 41%]
cobra/test/test_core/test_model.py ..................................... [ 53%]
............................s..s.ss. [ 65%]
cobra/test/test_core/test_solution.py .ss [ 66%]
cobra/test/test_core/test_summary/test_metabolite_summary.py ........ [ 69%]
cobra/test/test_core/test_summary/test_model_summary.py .......... [ 72%]
cobra/test/test_core/test_summary/test_reaction_summary.py ss.. [ 74%]
cobra/test/test_io/test_annotation.py .. [ 74%]
cobra/test/test_io/test_annotation_format.py .. [ 75%]
cobra/test/test_io/test_io_order.py ........................... [ 84%]
cobra/test/test_io/test_json.py x.x [ 85%]
cobra/test/test_io/test_mat.py ss [ 86%]
cobra/test/test_io/test_notes.py . [ 86%]
cobra/test/test_io/test_pickle.py .s.s [ 88%]
cobra/test/test_io/test_sbml.py ............xxxx.x.x..s.......... [ 99%]
cobra/test/test_io/test_yaml.py .x [100%]
=============================== warnings summary ===============================
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
cobra/core/dictlist.py:213
cobra/core/dictlist.py:213 [1;31mSyntaxWarning[0m: "is" with a literal. Did you mean "=="?
cobra/core/gene.py:249
cobra/core/gene.py:249 [1;31mDeprecationWarning[0m: invalid escape sequence \(
cobra/core/gene.py:268
cobra/core/gene.py:268 [1;31mDeprecationWarning[0m: invalid escape sequence \(
cobra/core/reaction.py:40
cobra/core/reaction.py:40 [1;31mDeprecationWarning[0m: invalid escape sequence \s
cobra/flux_analysis/gapfilling.py:13
cobra/flux_analysis/gapfilling.py:13 [1;31mDeprecationWarning[0m: invalid escape sequence \s
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_escape_ids
/usr/lib/python3/dist-packages/optlang/interface.py:1358 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
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.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_remove_reaction_benchmark[gurobi]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_context
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_reaction_from_other_model
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_add_cobra_reaction
cobra/core/model.py:524 [1;31mDeprecationWarning[0m: add_reaction deprecated. Use add_reactions instead
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
cobra/core/model.py:287 [1;31mDeprecationWarning[0m: The 'warn' method is deprecated, use 'warning' instead
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_1
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALD' to a fixed flux value of -9. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALD' to a fixed flux value of 2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALD' to a fixed flux value of -10. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_3
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALD' to a fixed flux value of -11. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_4
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALD' to a fixed flux value of -2. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_bounds_scenario_2
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_make_irreversible_irreversible_to_the_other_side
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PFK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_knockout
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ATPM' to a fixed flux value of 8.39. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALDt' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACKr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACONTa' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACONTb' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ADK1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'AKGDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'AKGt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ALCD2x' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ATPM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ATPS4r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'CO2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'CS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'CYTBD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'D_LACt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ENO' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ETOHt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_ac_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_acald_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_akg_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_co2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_for_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_fru_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_fum_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_h_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_o2_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_pi_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_succ_e' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FBA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FBP' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FORt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FORti' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FRD7' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FRUpts2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FUM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FUMt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'G6PDH2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GAPD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLCpts' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLNS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLNabc' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUDy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUN' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUSy' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GND' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'H2Ot' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ICDHyr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ICL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'LDH_D' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'MALS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'MALt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'MDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ME1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ME2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'NADH16' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'NADTRHD' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'NH4t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'O2t' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PDH' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PFK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PFL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGL' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGM' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PIt2r' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PPC' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PPCK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PPS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PTAr' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PYK' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PYRt2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'RPE' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'RPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCCt3' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCDi' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCOAS' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TALA' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'THD2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TKT1' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TKT2' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_lb_higher_than_ub_sets_ub_to_new_lb
cobra/core/reaction.py:241 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TPI' to a fixed flux value of 1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACALDt' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACKr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACONTa' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACONTb' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ACt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ADK1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'AKGDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'AKGt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ALCD2x' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ATPM' to a fixed flux value of -91.61. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ATPS4r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'Biomass_Ecoli_core' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'CO2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'CS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'CYTBD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'D_LACt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ENO' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ETOHt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_ac_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_acald_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_akg_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_co2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_etoh_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_for_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_fru_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_fum_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_glc__D_e' to a fixed flux value of -110.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_gln__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_glu__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_h_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_h2o_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_lac__D_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_mal__L_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_nh4_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_o2_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_pi_e' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_pyr_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'EX_succ_e' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FBA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FBP' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FORt2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FORti' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FRD7' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FRUpts2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FUM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'FUMt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'G6PDH2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GAPD' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLCpts' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLNS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLNabc' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUDy' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUN' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUSy' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GLUt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'GND' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'H2Ot' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ICDHyr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ICL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'LDH_D' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'MALS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'MALt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'MDH' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ME1' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'ME2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'NADH16' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'NADTRHD' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'NH4t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'O2t' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PDH' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PFL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGK' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGL' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PGM' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PIt2r' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PPC' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PPCK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PPS' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PTAr' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PYK' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'PYRt2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'RPE' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'RPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCCt2_2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCCt3' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCDi' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'SUCOAS' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TALA' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'THD2' to a fixed flux value of -100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TKT1' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TKT2' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py::test_set_ub_lower_than_lb_sets_lb_to_new_ub
cobra/core/reaction.py:271 [1;31mDeprecationWarning[0m: You are constraining the reaction 'TPI' to a fixed flux value of -1100.0. Did you intend to do this? We are planning to remove this behavior in a future release. Please let us know your opinion at https://github.com/opencobra/cobrapy/issues/793.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_reaction_delete
cobra/core/reaction.py:598 [1;31mDeprecationWarning[0m: delete is deprecated. Use reaction.remove_from_model instead
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements
cobra/core/group.py:110 [1;31mUserWarning[0m: need to pass in a list
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_group_loss_of_elements
cobra/core/gene.py:237 [1;31mUserWarning[0m: Use cobra.manipulation.remove_genes instead
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models
cobra/core/model.py:307 [1;31mDeprecationWarning[0m: use model.merge instead
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py::test_merge_models
cobra/core/model.py:317 [1;31mDeprecationWarning[0m: use model.merge instead
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table_previous_solution[optlang-glpk-q8_c]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table[optlang-glpk-q8_c-False]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table[optlang-glpk-q8_c-True]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py::test_metabolite_summary_to_table_with_fva[optlang-glpk-0.99-fdp_c]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_previous_solution[optlang-glpk-False]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_previous_solution[optlang-glpk-True]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table[optlang-glpk-False]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table[optlang-glpk-True]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py::test_model_summary_to_table_with_fva[optlang-glpk-0.95]
cobra/core/summary/summary.py:206 [1;31mUserWarning[0m: Setting float_format to anything other than None will cause nan to be present in the output.
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py::test_load_json_model
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py::test_read_pickle[load_function0]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Gz]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Gz]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_read_1[fbc2Bz2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[fbc2Bz2]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::TestCobraIO::test_write_1[cobra]
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_filehandle
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py::test_from_sbml_string
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py::test_load_yaml_model
cobra/util/solver.py:416 [1;31mUserWarning[0m: solver status is 'infeasible'
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-------------------------------------------------------------------------------------------------------------------- benchmark: 21 tests --------------------------------------------------------------------------------------------------------------------
Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[glpk] 97.6690 (1.0) 1,072.6941 (1.04) 104.5342 (1.0) 55.3345 (1.03) 100.0029 (1.0) 1.6671 (1.00) 2;32 9,566.2515 (1.0) 313 1
test_subtract_metabolite_benchmark[gurobi] 97.6690 (1.0) 13,569.3529 (13.11) 144.6000 (1.38) 756.4271 (14.08) 100.3360 (1.00) 1.6668 (1.0) 1;34 6,915.6285 (0.72) 317 1
test_subtract_metabolite_benchmark[cplex] 98.3360 (1.01) 1,034.6929 (1.0) 105.5213 (1.01) 53.7325 (1.0) 100.6699 (1.01) 1.9998 (1.20) 1;32 9,476.7634 (0.99) 306 1
test_change_objective_benchmark[gurobi] 3,718.4311 (38.07) 22,359.9190 (21.61) 4,058.0612 (38.82) 1,536.1995 (28.59) 3,802.9330 (38.03) 40.5011 (24.30) 16;31 246.4231 (0.03) 392 1
test_change_objective_benchmark[cplex] 3,747.0991 (38.37) 20,407.5351 (19.72) 4,349.2705 (41.61) 2,115.0232 (39.36) 3,842.7673 (38.43) 43.0008 (25.80) 24;41 229.9236 (0.02) 394 1
test_change_objective_benchmark[glpk] 3,762.0980 (38.52) 20,356.8670 (19.67) 4,097.6152 (39.20) 1,485.9462 (27.65) 3,841.7671 (38.42) 44.3351 (26.60) 17;27 244.0444 (0.03) 382 1
test_add_remove_reaction_benchmark[gurobi] 6,612.5051 (67.70) 7,949.2060 (7.68) 7,043.7720 (67.38) 265.9767 (4.95) 7,011.6820 (70.11) 162.6711 (97.59) 17;12 141.9694 (0.01) 90 1
test_add_remove_reaction_benchmark[cplex] 6,656.5070 (68.15) 9,411.9110 (9.10) 7,933.7000 (75.90) 817.5991 (15.22) 8,004.2081 (80.04) 1,548.2900 (928.88) 34;0 126.0446 (0.01) 81 1
test_add_remove_reaction_benchmark[glpk] 6,801.1768 (69.63) 9,707.9189 (9.38) 7,100.3496 (67.92) 361.2686 (6.72) 7,002.8489 (70.03) 132.4204 (79.44) 7;13 140.8381 (0.01) 99 1
test_benchmark_medium_mip 142,845.0500 (>1000.0) 152,887.3111 (147.76) 145,791.4122 (>1000.0) 3,677.1107 (68.43) 144,077.4151 (>1000.0) 4,359.8633 (>1000.0) 1;0 6.8591 (0.00) 7 1
test_benchmark_medium_linear 148,571.8659 (>1000.0) 150,187.9082 (145.15) 149,411.6972 (>1000.0) 677.0296 (12.60) 149,580.8919 (>1000.0) 1,261.6165 (756.89) 3;0 6.6929 (0.00) 7 1
test_copy_benchmark[glpk] 281,229.9749 (>1000.0) 1,381,759.9060 (>1000.0) 504,841.2520 (>1000.0) 490,241.8346 (>1000.0) 285,483.7510 (>1000.0) 284,964.9886 (>1000.0) 1;1 1.9808 (0.00) 5 1
test_copy_benchmark[gurobi] 283,855.7090 (>1000.0) 333,558.6670 (322.37) 313,115.9360 (>1000.0) 19,923.6527 (370.79) 318,059.2640 (>1000.0) 30,230.9524 (>1000.0) 2;0 3.1937 (0.00) 5 1
test_copy_benchmark[cplex] 284,589.7290 (>1000.0) 301,904.1780 (291.78) 291,849.5172 (>1000.0) 9,148.7153 (170.26) 285,940.7640 (>1000.0) 16,933.6891 (>1000.0) 2;0 3.4264 (0.00) 5 1
test_deepcopy_benchmark 394,705.6760 (>1000.0) 490,700.5250 (474.25) 418,203.9588 (>1000.0) 40,699.7491 (757.45) 400,343.8239 (>1000.0) 27,992.8169 (>1000.0) 1;1 2.3912 (0.00) 5 1
test_add_metabolite_benchmark[cplex] 1,751,429.2260 (>1000.0) 1,761,392.4879 (>1000.0) 1,755,050.9882 (>1000.0) 3,764.9312 (70.07) 1,754,281.9679 (>1000.0) 3,481.8421 (>1000.0) 1;0 0.5698 (0.00) 5 1
test_add_metabolite_benchmark[gurobi] 1,757,043.7021 (>1000.0) 1,762,292.5041 (>1000.0) 1,759,528.3672 (>1000.0) 2,094.1300 (38.97) 1,760,209.1201 (>1000.0) 3,087.9964 (>1000.0) 2;0 0.5683 (0.00) 5 1
test_add_metabolite_benchmark[glpk] 1,758,888.0919 (>1000.0) 1,763,681.5489 (>1000.0) 1,760,467.6666 (>1000.0) 1,884.2139 (35.07) 1,759,819.1181 (>1000.0) 1,925.8855 (>1000.0) 1;0 0.5680 (0.00) 5 1
test_copy_benchmark_large_model[cplex] 6,012,266.8070 (>1000.0) 8,157,677.9820 (>1000.0) 7,003,861.9062 (>1000.0) 997,866.0089 (>1000.0) 6,427,355.9810 (>1000.0) 1,722,310.7065 (>1000.0) 1;0 0.1428 (0.00) 5 1
test_copy_benchmark_large_model[gurobi] 6,469,915.2932 (>1000.0) 9,171,659.2382 (>1000.0) 7,034,043.9820 (>1000.0) 1,195,130.0396 (>1000.0) 6,515,919.1419 (>1000.0) 695,435.7795 (>1000.0) 1;1 0.1422 (0.00) 5 1
test_copy_benchmark_large_model[glpk] 6,479,325.5911 (>1000.0) 7,927,190.8649 (>1000.0) 7,080,799.6272 (>1000.0) 759,140.0721 (>1000.0) 6,550,661.1329 (>1000.0) 1,371,157.0419 (>1000.0) 2;0 0.1412 (0.00) 5 1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
====== 266 passed, 19 skipped, 10 xfailed, 528 warnings in 636.53 seconds ======
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/metabolite_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/model_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/summary/__pycache__/reaction_summary.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/configuration.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/singleton.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/dictlist.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/gene.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/species.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/object.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/metabolite.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/formula.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/model.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/group.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/reaction.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/solution.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/fastcc.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/helpers.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/dict.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/json.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/mat.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/sbml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/yaml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/delete.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/modify.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/validate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/annotations.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/achr.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/hr_sampler.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/optgp.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/achr.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/optgp.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/sampling/__pycache__/sampling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_core_reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_group.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_metabolite_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_model_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/test_reaction_summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_metabolite_summary.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_model_summary.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/test_summary/__pycache__/test_reaction_summary.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_configuration.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_core_reaction.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_dictlist.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_gene.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_group.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_metabolite.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_model.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_core/__pycache__/test_solution.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_annotation_format.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_notes.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_annotation_format.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_io_order.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_json.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_mat.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_notes.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_pickle.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_sbml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_yaml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/annotation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/e_coli_core.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/example_notes.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/fbc_ex2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_format.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/valid_annotation_output.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/validation.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_medium.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/array.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/context.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/solver.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/util.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/exceptions.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/exceptions.py to exceptions.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/configuration.py to configuration.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py to dictlist.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/formula.py to formula.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/gene.py to gene.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/group.py to group.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/metabolite.py to metabolite.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/model.py to model.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/object.py to object.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/singleton.py to singleton.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/solution.py to solution.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/species.py to species.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/metabolite_summary.py to metabolite_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/model_summary.py to model_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/reaction_summary.py to reaction_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/summary/summary.py to summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/room.py to room.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/dict.py to dict.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/json.py to json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/mat.py to mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/sbml.py to sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/yaml.py to yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/delete.py to delete.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/modify.py to modify.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/validate.py to validate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/annotations.py to annotations.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/achr.py to achr.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/optgp.py to optgp.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/sampling/sampling.py to sampling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_medium.py to test_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_configuration.py to test_configuration.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_core_reaction.py to test_core_reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_dictlist.py to test_dictlist.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_gene.py to test_gene.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_group.py to test_group.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_metabolite.py to test_metabolite.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_model.py to test_model.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_solution.py to test_solution.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_metabolite_summary.py to test_metabolite_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_model_summary.py to test_model_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_core/test_summary/test_reaction_summary.py to test_reaction_summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation.py to test_annotation.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_annotation_format.py to test_annotation_format.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_io_order.py to test_io_order.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_json.py to test_json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_mat.py to test_mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_notes.py to test_notes.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_pickle.py to test_pickle.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py to test_sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_yaml.py to test_yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/array.py to array.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/context.py to context.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/solver.py to solver.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/util.py to util.cpython-38.pyc
running install_egg_info
running egg_info
creating cobra.egg-info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py:213: SyntaxWarning: "is" with a literal. Did you mean "=="?
/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py:225: SyntaxWarning: "is" with a literal. Did you mean "=="?
warning: no files found matching 'cobra'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra-0.18.1.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -a -O--buildsystem=pybuild
dh_strip -a -a -O--buildsystem=pybuild
dh_makeshlibs -a -a -O--buildsystem=pybuild
dh_shlibdeps -a -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.18.1-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.18.1-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-08-23T12:37:11Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.18.1-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Sat, 08 Aug 2020 14:59:14 +0200
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.18.1-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-cobra - constraint-based modeling of biological networks with Python 3
Closes: 961224
Changes:
python-cobra (0.18.1-2) unstable; urgency=medium
.
* Exclude s390x from list of architectures since one test of the test
suite fails on this architecture and there are no resources to track
this down.
Closes: #961224
Checksums-Sha1:
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7f90763ee37e25041a94e007e16c2526dab7d577 127940 python3-cobra_0.18.1-2_armhf.deb
Checksums-Sha256:
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Files:
02817c315d88c2b1e69573396a87420d 7830 python optional python-cobra_0.18.1-2_armhf.buildinfo
213961c370fda2a3597cc0a7585dd456 127940 python optional python3-cobra_0.18.1-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-cobra_0.18.1-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 127940 bytes: control archive=3724 bytes.
1084 bytes, 19 lines control
8890 bytes, 95 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.18.1-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 707
Depends: python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-pandas (>= 0.17.0), python3-ruamel.yaml, python3-sbml5, python3-six, python3-swiglpk, python3:any, python-cobra-data (= 0.18.1-2), python3-simplejson, python3-tabulate
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: https://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
drwxr-xr-x root/root 0 2020-08-08 12:59 ./
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/
-rw-r--r-- root/root 11635 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/dependency_links.txt
-rw-r--r-- root/root 28 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/requires.txt
-rw-r--r-- root/root 6 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra-0.18.1.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root 1365 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/core/
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-rw-r--r-- root/root 4732 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/configuration.py
-rw-r--r-- root/root 14980 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/dictlist.py
-rw-r--r-- root/root 5588 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/formula.py
-rw-r--r-- root/root 9964 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/gene.py
-rw-r--r-- root/root 3622 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/group.py
-rw-r--r-- root/root 10589 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/metabolite.py
-rw-r--r-- root/root 50747 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/model.py
-rw-r--r-- root/root 1641 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/object.py
-rw-r--r-- root/root 43633 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/reaction.py
-rw-r--r-- root/root 528 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/singleton.py
-rw-r--r-- root/root 8450 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/solution.py
-rw-r--r-- root/root 1337 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/species.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/core/summary/
-rw-r--r-- root/root 302 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/summary/__init__.py
-rw-r--r-- root/root 5375 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/summary/metabolite_summary.py
-rw-r--r-- root/root 7983 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/summary/model_summary.py
-rw-r--r-- root/root 2698 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/summary/reaction_summary.py
-rw-r--r-- root/root 7254 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/core/summary/summary.py
-rw-r--r-- root/root 777 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/exceptions.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root 781 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root 12947 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/deletion.py
-rw-r--r-- root/root 5899 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/fastcc.py
-rw-r--r-- root/root 13305 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root 4849 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/geometric.py
-rw-r--r-- root/root 576 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/helpers.py
-rw-r--r-- root/root 9591 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root 5515 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root 3799 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root 10265 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root 8020 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root 5020 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/room.py
-rw-r--r-- root/root 14027 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/io/
-rw-r--r-- root/root 429 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root 7185 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/io/dict.py
-rw-r--r-- root/root 6733 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/io/json.py
-rw-r--r-- root/root 11084 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root 65427 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root 3303 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/io/yaml.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/manipulation/
-rw-r--r-- root/root 440 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root 872 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root 8859 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root 3891 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root 1028 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/medium/
-rw-r--r-- root/root 244 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/medium/__init__.py
-rw-r--r-- root/root 1933 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/medium/annotations.py
-rw-r--r-- root/root 5859 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/medium/boundary_types.py
-rw-r--r-- root/root 9243 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/medium/minimal_medium.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/sampling/
-rw-r--r-- root/root 269 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/sampling/__init__.py
-rw-r--r-- root/root 5998 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/sampling/achr.py
-rw-r--r-- root/root 20325 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/sampling/hr_sampler.py
-rw-r--r-- root/root 8962 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/sampling/optgp.py
-rw-r--r-- root/root 3017 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/sampling/sampling.py
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/test/
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lrwxrwxrwx root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/test/test_core/
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drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/test/test_core/test_summary/
-rw-r--r-- root/root 1325 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_core/test_summary/__init__.py
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drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/test/test_io/
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-rw-r--r-- root/root 3622 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_io/conftest.py
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-rw-r--r-- root/root 2260 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_io/test_mat.py
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-rw-r--r-- root/root 11098 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_manipulation.py
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drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/lib/python3/dist-packages/cobra/util/
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-rw-r--r-- root/root 1759 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/util/context.py
-rw-r--r-- root/root 18395 2020-06-10 10:27 ./usr/lib/python3/dist-packages/cobra/util/solver.py
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drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/share/
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/share/doc/
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-rw-r--r-- root/root 2071 2020-08-08 12:59 ./usr/share/doc/python3-cobra/copyright
drwxr-xr-x root/root 0 2020-08-08 12:59 ./usr/share/lintian/
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-rw-r--r-- root/root 146 2020-08-08 12:59 ./usr/share/lintian/overrides/python3-cobra
+------------------------------------------------------------------------------+
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+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 26240
Build-Time: 694
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1447
Job: python-cobra_0.18.1-2
Machine Architecture: armhf
Package: python-cobra
Package-Time: 2190
Source-Version: 0.18.1-2
Space: 26240
Status: successful
Version: 0.18.1-2
--------------------------------------------------------------------------------
Finished at 2020-08-23T12:37:11Z
Build needed 00:36:30, 26240k disc space