python-cobra →
0.14.2-2 →
armhf → 2020-02-25 05:02:46
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| python-cobra 0.14.2-2 (armhf) Tue, 25 Feb 2020 04:32:10 +0000 |
+==============================================================================+
Package: python-cobra
Version: 0.14.2-2
Source Version: 0.14.2-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-e491f6e9-eed8-4b4a-a1a6-cebac8e097f6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 26s (945 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1779 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-cobra 0.14.2-2 (dsc) [2608 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-cobra 0.14.2-2 (tar) [1769 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-cobra 0.14.2-2 (diff) [7368 B]
Fetched 1779 kB in 0s (8473 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-OHIQPk/python-cobra-0.14.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-OHIQPk' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Gx2Q2s/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Gx2Q2s/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2481 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12214 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0)
Filtered Build-Depends: debhelper (>= 12~), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, python3-sbml, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0)
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Sources [647 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ Packages [733 B]
Fetched 2713 B in 1s (3353 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gettext gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
libblas-dev libblas3 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3
libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libicu63
libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic-mgc libmagic1
libmetis5 libmongoose2 libmpdec2 libpipeline1 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib librbio2 libsigsegv2 libspqr2
libssl1.1 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5
libtinfo5 libtool libuchardet0 libumfpack5 libxml2 m4 man-db mime-support
openssl po-debconf python-pip-whl python3 python3-all python3-all-dev
python3-atomicwrites python3-attr python3-certifi python3-chardet
python3-cpuinfo python3-dateutil python3-depinfo python3-dev
python3-distutils python3-future python3-idna python3-importlib-metadata
python3-jsonschema python3-lib2to3 python3-minimal python3-more-itertools
python3-mpmath python3-numpy python3-optlang python3-packaging
python3-pandas python3-pandas-lib python3-pip python3-pipdeptree
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pyrsistent python3-pytest python3-pytest-benchmark python3-requests
python3-ruamel.yaml python3-sbml5 python3-setuptools python3-simplejson
python3-six python3-swiglpk python3-sympy python3-tabulate python3-tz
python3-urllib3 python3-wcwidth python3-zipp python3.7 python3.7-dev
python3.7-minimal python3.8 python3.8-dev python3.8-minimal sensible-utils
swig swig3.0 zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff liblapack-doc libiodbc2-dev default-libmysqlclient-dev gmp-doc
libgmp10-doc libmpfr-dev libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-attr-doc python-future-doc python-jsonschema-doc
python3-gmpy2 python3-matplotlib python-mpmath-doc gfortran python-numpy-doc
python3-numpy-dbg python-pandas-doc python3-statsmodels subversion
python-pyparsing-doc python3-cryptography python3-openssl python3-socks
python-setuptools-doc texlive-fonts-extra dvipng python-sympy-doc
python3.7-venv python3.7-doc binfmt-support python3.8-venv python3.8-doc
swig-doc swig-examples swig3.0-examples swig3.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-scipy
python3-matplotlib python3-numexpr python3-tables python3-xlrd
python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml
python3-wheel python3-elasticsearch python3-freezegun python3-pygal
python3-pil ipython3
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
gettext gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
libblas-dev libblas3 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3
libcolamd2 libcroco3 libcxsparse3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas3 libicu63
libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic-mgc libmagic1
libmetis5 libmongoose2 libmpdec2 libpipeline1 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib librbio2 libsigsegv2 libspqr2
libssl1.1 libsub-override-perl libsuitesparse-dev libsuitesparseconfig5
libtinfo5 libtool libuchardet0 libumfpack5 libxml2 m4 man-db mime-support
openssl po-debconf python-pip-whl python3 python3-all python3-all-dev
python3-atomicwrites python3-attr python3-certifi python3-chardet
python3-cpuinfo python3-dateutil python3-depinfo python3-dev
python3-distutils python3-future python3-idna python3-importlib-metadata
python3-jsonschema python3-lib2to3 python3-minimal python3-more-itertools
python3-mpmath python3-numpy python3-optlang python3-packaging
python3-pandas python3-pandas-lib python3-pip python3-pipdeptree
python3-pkg-resources python3-pluggy python3-py python3-pyparsing
python3-pyrsistent python3-pytest python3-pytest-benchmark python3-requests
python3-ruamel.yaml python3-sbml5 python3-setuptools python3-simplejson
python3-six python3-swiglpk python3-sympy python3-tabulate python3-tz
python3-urllib3 python3-wcwidth python3-zipp python3.7 python3.7-dev
python3.7-minimal python3.8 python3.8-dev python3.8-minimal
sbuild-build-depends-python-cobra-dummy sensible-utils swig swig3.0
zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 140 newly installed, 0 to remove and 26 not upgraded.
Need to get 160 MB of archives.
After this operation, 536 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:2 copy:/<<BUILDDIR>>/resolver-Gx2Q2s/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1016 B]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-1.2 [84.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1+b1 [585 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1+b1 [1525 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1+b1 [1669 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1+b1 [351 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2~rc2-2 [743 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2~rc2-2 [1625 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-13 [513 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-2 [1138 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libsuitesparseconfig5 armhf 1:5.6.0+dfsg-2 [21.7 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libamd2 armhf 1:5.6.0+dfsg-2 [28.3 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-1 [113 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libbtf1 armhf 1:5.6.0+dfsg-2 [22.3 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libcamd2 armhf 1:5.6.0+dfsg-2 [28.9 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libccolamd2 armhf 1:5.6.0+dfsg-2 [29.6 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libcolamd2 armhf 1:5.6.0+dfsg-2 [26.4 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-25+rpi1 [231 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libcholmod3 armhf 1:5.6.0+dfsg-2 [212 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcxsparse3 armhf 1:5.6.0+dfsg-2 [50.8 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-13 [388 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libglpk40 armhf 4.65-2 [339 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libgmpxx4ldbl armhf 2:6.1.2+dfsg-4 [21.8 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgmp-dev armhf 2:6.1.2+dfsg-4 [570 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1.2 [203 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libgraphblas3 armhf 1:5.6.0+dfsg-2 [1930 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libklu1 armhf 1:5.6.0+dfsg-2 [50.1 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libldl2 armhf 1:5.6.0+dfsg-2 [22.1 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libmongoose2 armhf 1:5.6.0+dfsg-2 [42.3 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libumfpack5 armhf 1:5.6.0+dfsg-2 [126 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf librbio2 armhf 1:5.6.0+dfsg-2 [30.9 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libspqr2 armhf 1:5.6.0+dfsg-2 [67.8 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-1 [2981 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libsuitesparse-dev armhf 1:5.6.0+dfsg-2 [2262 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libglpk-dev armhf 4.65-2 [379 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1+b1 [1256 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1+b1 [40.2 MB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2~rc2-2 [1598 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.2~rc2-2 [1365 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.2~rc2-2 [46.0 MB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-3 [1072 B]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf python-pip-whl all 18.1-5 [1591 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2~rc2-2 [409 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-3 [1060 B]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1+b1 [518 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.2~rc2-2 [519 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-3 [1076 B]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.1.5-2 [6892 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 19.3.0-1 [43.1 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2019.11.28-1 [149 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-4 [80.8 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-cpuinfo all 5.0.0-2 [19.0 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.14.0-2 [16.7 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-pip all 18.1-5 [171 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-pipdeptree armhf 0.13.2-1 [15.5 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-depinfo armhf 1.5.1-1 [5528 B]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-future all 0.18.2-1 [348 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.6-2 [34.4 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-1 [42.2 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-1 [5944 B]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.5.0-1 [9956 B]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-pyrsistent armhf 0.15.5-1 [55.5 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-jsonschema all 3.0.2-4 [44.9 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-mpmath all 1.1.0-1 [416 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-swiglpk armhf 4.65.0-2+b1 [70.5 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-sympy all 1.4-1 [3604 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-optlang all 1.4.4-2 [67.7 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.6-1 [109 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 19.1-2 [23.9 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-1 [27.2 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg-4+b1 [7002 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg-4 [1983 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-2 [21.9 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.8.1-1 [86.8 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.8+dfsg1-3 [17.4 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.9-1 [267 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-benchmark all 3.2.2-2 [46.4 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.8-1 [104 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.22.0-2 [67.0 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-ruamel.yaml armhf 0.15.89-3 [216 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf swig3.0 armhf 3.0.12-2.2 [1242 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf swig armhf 3.0.12-2.2 [310 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-sbml5 armhf 5.18.0+dfsg-1 [2870 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-simplejson armhf 3.16.0-2 [58.0 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-tabulate all 0.8.2-1.1 [32.2 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libgmpxx4ldbl:armhf (2:6.1.2+dfsg-4) ...
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Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1.2) ...
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Selecting previously unselected package librbio2:armhf.
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Selecting previously unselected package libspqr2:armhf.
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Unpacking libspqr2:armhf (1:5.6.0+dfsg-2) ...
Selecting previously unselected package liblapack-dev:armhf.
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Unpacking liblapack-dev:armhf (3.9.0-1) ...
Selecting previously unselected package libsuitesparse-dev:armhf.
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Unpacking libglpk-dev:armhf (4.65-2) ...
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Unpacking libpython3.7:armhf (3.7.6-1+b1) ...
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Unpacking libpython3.8-stdlib:armhf (3.8.2~rc2-2) ...
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Unpacking python3-atomicwrites (1.1.5-2) ...
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Unpacking python3-attr (19.3.0-1) ...
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Unpacking python3-six (1.14.0-2) ...
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Unpacking python3-pip (18.1-5) ...
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Unpacking python3-zipp (1.0.0-1) ...
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Unpacking python3-setuptools (44.0.0-1) ...
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Selecting previously unselected package python3-mpmath.
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Unpacking python3-mpmath (1.1.0-1) ...
Selecting previously unselected package python3-numpy.
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Unpacking python3-numpy (1:1.17.4-5+b1) ...
Selecting previously unselected package python3-swiglpk.
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Unpacking python3-swiglpk (4.65.0-2+b1) ...
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Unpacking python3-sympy (1.4-1) ...
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Unpacking python3-packaging (19.1-2) ...
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Unpacking python3-tz (2019.3-1) ...
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Unpacking python3-py (1.8.1-1) ...
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Unpacking python3-requests (2.22.0-2) ...
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Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libgraphblas3:armhf (1:5.6.0+dfsg-2) ...
Setting up libpython3.8-minimal:armhf (3.8.2~rc2-2) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.4-2) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (12.9) ...
Setting up libldl2:armhf (1:5.6.0+dfsg-2) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up libmetis5:armhf (5.1.0.dfsg-5) ...
Setting up file (1:5.38-4) ...
Setting up libbtf1:armhf (1:5.6.0+dfsg-2) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.1.2+dfsg-4) ...
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up swig3.0 (3.0.12-2.2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libltdl7:armhf (2.4.6-13) ...
Setting up libgfortran5:armhf (9.2.1-25+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1.2) ...
Setting up python3.8-minimal (3.8.2~rc2-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libcxsparse3:armhf (1:5.6.0+dfsg-2) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libpython3.8-stdlib:armhf (3.8.2~rc2-2) ...
Setting up python3.8 (3.8.2~rc2-2) ...
Setting up openssl (1.1.1d-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up libsuitesparseconfig5:armhf (1:5.6.0+dfsg-2) ...
Setting up libblas-dev:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up librbio2:armhf (1:5.6.0+dfsg-2) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libamd2:armhf (1:5.6.0+dfsg-2) ...
Setting up libpython3.7-stdlib:armhf (3.7.6-1+b1) ...
Setting up liblapack3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up swig (3.0.12-2.2) ...
Setting up libgmp-dev:armhf (2:6.1.2+dfsg-4) ...
Setting up libcolamd2:armhf (1:5.6.0+dfsg-2) ...
Setting up libpython3.7:armhf (3.7.6-1+b1) ...
Setting up libtool (2.4.6-13) ...
Setting up libpython3.7-dev:armhf (3.7.6-1+b1) ...
Setting up m4 (1.4.18-4) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up libcamd2:armhf (1:5.6.0+dfsg-2) ...
Setting up libmongoose2:armhf (1:5.6.0+dfsg-2) ...
Setting up libglpk40:armhf (4.65-2) ...
Setting up libpython3.8:armhf (3.8.2~rc2-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up liblapack-dev:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libklu1:armhf (1:5.6.0+dfsg-2) ...
Setting up libccolamd2:armhf (1:5.6.0+dfsg-2) ...
Setting up python-pip-whl (18.1-5) ...
Setting up libcholmod3:armhf (1:5.6.0+dfsg-2) ...
Setting up libpython3-stdlib:armhf (3.7.5-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libspqr2:armhf (1:5.6.0+dfsg-2) ...
Setting up python3.7 (3.7.6-1+b1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libpython3-dev:armhf (3.7.5-3) ...
Setting up python3 (3.7.5-3) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.6-1+b1) ...
Setting up python3-sbml5 (5.18.0+dfsg-1) ...
Setting up python3-tz (2019.3-1) ...
Setting up python3-atomicwrites (1.1.5-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.14.0-2) ...
Setting up python3-simplejson (3.16.0-2) ...
Setting up libumfpack5:armhf (1:5.6.0+dfsg-2) ...
Setting up python3-wcwidth (0.1.8+dfsg1-3) ...
Setting up python3-pyparsing (2.4.6-1) ...
Setting up python3-certifi (2019.11.28-1) ...
Setting up libpython3.8-dev:armhf (3.8.2~rc2-2) ...
Setting up libpython3-all-dev:armhf (3.7.5-3) ...
Setting up python3-idna (2.6-2) ...
Setting up cython3 (0.29.14-0.1) ...
Setting up python3-cpuinfo (5.0.0-2) ...
Setting up python3-urllib3 (1.25.8-1) ...
Setting up python3.8-dev (3.8.2~rc2-2) ...
Setting up python3-ruamel.yaml (0.15.89-3) ...
Setting up python3-pyrsistent:armhf (0.15.5-1) ...
Setting up python3-dateutil (2.7.3-3) ...
Setting up python3-mpmath (1.1.0-1) ...
/usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:892: SyntaxWarning: "is" with a literal. Did you mean "=="?
if other is 0:
/usr/lib/python3/dist-packages/mpmath/ctx_mp_python.py:986: SyntaxWarning: "is" with a literal. Did you mean "=="?
if other is 0:
Setting up python3-lib2to3 (3.8.0-1) ...
Setting up python3-swiglpk (4.65.0-2+b1) ...
Setting up python3-pkg-resources (44.0.0-1) ...
Setting up python3-distutils (3.8.0-1) ...
Setting up dh-python (4.20191017) ...
Setting up python3-more-itertools (4.2.0-1) ...
Setting up python3-sympy (1.4-1) ...
/usr/lib/python3/dist-packages/sympy/core/tests/test_containers.py:55: SyntaxWarning: "is not" with a literal. Did you mean "!="?
assert Tuple(1, 2) is not (1, 2)
/usr/lib/python3/dist-packages/sympy/geometry/tests/test_plane.py:190: SyntaxWarning: "is" with a literal. Did you mean "=="?
assert len(pl8.intersection(Ray3D(Point3D(0, 2, 3), Point3D(1, 0, 3)))) is 0
/usr/lib/python3/dist-packages/sympy/physics/vector/printing.py:155: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if len(base_split) is not 1:
/usr/lib/python3/dist-packages/sympy/plotting/plot.py:509: SyntaxWarning: "is" with a literal. Did you mean "=="?
if self.xscale is 'log':
/usr/lib/python3/dist-packages/sympy/plotting/plot.py:529: SyntaxWarning: "is" with a literal. Did you mean "=="?
if self.xscale is 'log':
/usr/lib/python3/dist-packages/sympy/plotting/plot.py:542: SyntaxWarning: "is" with a literal. Did you mean "=="?
if self.xscale is 'log':
/usr/lib/python3/dist-packages/sympy/plotting/plot.py:549: SyntaxWarning: "is" with a literal. Did you mean "=="?
if self.xscale is 'log':
/usr/lib/python3/dist-packages/sympy/polys/agca/modules.py:360: SyntaxWarning: "is" with a literal. Did you mean "=="?
elif elem is 0:
/usr/lib/python3/dist-packages/sympy/solvers/diophantine.py:3186: SyntaxWarning: "is" with a literal. Did you mean "=="?
if feasible is 1: # it's prime and k == 2
/usr/lib/python3/dist-packages/sympy/vector/coordsysrect.py:170: SyntaxWarning: "is" with a literal. Did you mean "=="?
if transformation.name is 'spherical':
/usr/lib/python3/dist-packages/sympy/vector/coordsysrect.py:172: SyntaxWarning: "is" with a literal. Did you mean "=="?
elif transformation.name is 'cylindrical':
Setting up python3-attr (19.3.0-1) ...
Setting up python3-setuptools (44.0.0-1) ...
Setting up python3-py (1.8.1-1) ...
Setting up libsuitesparse-dev:armhf (1:5.6.0+dfsg-2) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-tabulate (0.8.2-1.1) ...
Setting up python3-all (3.7.5-3) ...
Setting up python3-zipp (1.0.0-1) ...
Setting up python3-packaging (19.1-2) ...
Setting up python3-chardet (3.0.4-4) ...
Setting up python3-jsonschema (3.0.2-4) ...
Setting up libglpk-dev:armhf (4.65-2) ...
Setting up python3-dev (3.7.5-3) ...
Setting up python3-requests (2.22.0-2) ...
Setting up python3-pip (18.1-5) ...
Setting up python3-numpy (1:1.17.4-5+b1) ...
Setting up python3-future (0.18.2-1) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-pipdeptree (0.13.2-1) ...
Setting up python3-optlang (1.4.4-2) ...
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="?
if status is not "time_limit":
/usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="?
if status is "optimal":
Setting up python3-all-dev (3.7.5-3) ...
Setting up python3-importlib-metadata (1.5.0-1) ...
Setting up python3-pandas-lib (0.25.3+dfsg-4+b1) ...
Setting up python3-pandas (0.25.3+dfsg-4) ...
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
Setting up python3-depinfo (1.5.1-1) ...
Setting up python3-pluggy (0.13.0-2) ...
Setting up python3-pytest (4.6.9-1) ...
Setting up python3-pytest-benchmark (3.2.2-2) ...
Setting up debhelper (12.9) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-9+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.90.20200122-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-9+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.90.20200122-2+rpi1 binutils-arm-linux-gnueabihf_2.33.90.20200122-2+rpi1 binutils-common_2.33.90.20200122-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libamd2_1:5.6.0+dfsg-2 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.90.20200122-2+rpi1 libblas-dev_3.9.0-1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbtf1_1:5.6.0+dfsg-2 libbz2-1.0_1.0.8-2 libc-bin_2.29-9+rpi1 libc-dev-bin_2.29-9+rpi1 libc6_2.29-9+rpi1 libc6-dev_2.29-9+rpi1 libcamd2_1:5.6.0+dfsg-2 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-25+rpi1 libccolamd2_1:5.6.0+dfsg-2 libcholmod3_1:5.6.0+dfsg-2 libcolamd2_1:5.6.0+dfsg-2 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.33.90.20200122-2+rpi1 libctf0_2.33.90.20200122-2+rpi1 libcxsparse3_1:5.6.0+dfsg-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-25+rpi1 libglib2.0-0_2.62.4-2 libglpk-dev_4.65-2 libglpk40_4.65-2 libgmp-dev_2:6.1.2+dfsg-4 libgmp10_2:6.1.2+dfsg-4 libgmpxx4ldbl_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.36-7 libgraphblas3_1:5.6.0+dfsg-2 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libklu1_1:5.6.0+dfsg-2 libksba8_1.3.5-2 liblapack-dev_3.9.0-1 liblapack3_3.9.0-1 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 libldl2_1:5.6.0+dfsg-2 libltdl7_2.4.6-13 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmetis5_5.1.0.dfsg-5 libmongoose2_1:5.6.0+dfsg-2 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2+b1 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpython3-all-dev_3.7.5-3 libpython3-dev_3.7.5-3 libpython3-stdlib_3.7.5-3 libpython3.7_3.7.6-1+b1 libpython3.7-dev_3.7.6-1+b1 libpython3.7-minimal_3.7.6-1+b1 libpython3.7-stdlib_3.7.6-1+b1 libpython3.8_3.8.2~rc2-2 libpython3.8-dev_3.8.2~rc2-2 libpython3.8-minimal_3.8.2~rc2-2 libpython3.8-stdlib_3.8.2~rc2-2 librbio2_1:5.6.0+dfsg-2 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libspqr2_1:5.6.0+dfsg-2 libsqlite3-0_3.31.0+really3.30.1+fossil191229-1 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsuitesparse-dev_1:5.6.0+dfsg-2 libsuitesparseconfig5_1:5.6.0+dfsg-2 libsystemd0_244.1-1+rpi1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.1-1+rpi1 libumfpack5_1:5.6.0+dfsg-2 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 openssl_1.1.1d-2 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python-pip-whl_18.1-5 python3_3.7.5-3 python3-all_3.7.5-3 python3-all-dev_3.7.5-3 python3-atomicwrites_1.1.5-2 python3-attr_19.3.0-1 python3-certifi_2019.11.28-1 python3-chardet_3.0.4-4 python3-cpuinfo_5.0.0-2 python3-dateutil_2.7.3-3 python3-depinfo_1.5.1-1 python3-dev_3.7.5-3 python3-distutils_3.8.0-1 python3-future_0.18.2-1 python3-idna_2.6-2 python3-importlib-metadata_1.5.0-1 python3-jsonschema_3.0.2-4 python3-lib2to3_3.8.0-1 python3-minimal_3.7.5-3 python3-more-itertools_4.2.0-1 python3-mpmath_1.1.0-1 python3-numpy_1:1.17.4-5+b1 python3-optlang_1.4.4-2 python3-packaging_19.1-2 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4+b1 python3-pip_18.1-5 python3-pipdeptree_0.13.2-1 python3-pkg-resources_44.0.0-1 python3-pluggy_0.13.0-2 python3-py_1.8.1-1 python3-pyparsing_2.4.6-1 python3-pyrsistent_0.15.5-1 python3-pytest_4.6.9-1 python3-pytest-benchmark_3.2.2-2 python3-requests_2.22.0-2 python3-ruamel.yaml_0.15.89-3 python3-sbml5_5.18.0+dfsg-1 python3-setuptools_44.0.0-1 python3-simplejson_3.16.0-2 python3-six_1.14.0-2 python3-swiglpk_4.65.0-2+b1 python3-sympy_1.4-1 python3-tabulate_0.8.2-1.1 python3-tz_2019.3-1 python3-urllib3_1.25.8-1 python3-wcwidth_0.1.8+dfsg1-3 python3-zipp_1.0.0-1 python3.7_3.7.6-1+b1 python3.7-dev_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 python3.8_3.8.2~rc2-2 python3.8-dev_3.8.2~rc2-2 python3.8-minimal_3.8.2~rc2-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_3.0.12-2.2 swig3.0_3.0.12-2.2 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Mar 2 06:26:37 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.14.2-2.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.14.2.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.14.2-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-e491f6e9-eed8-4b4a-a1a6-cebac8e097f6
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.14.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.8 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
rm -rf .pytest_cache
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
running config
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/configuration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/singleton.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
copying cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build; python3.8 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.8.2rc2, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
plugins: benchmark-3.2.2
collected 79 items
cobra/test/test_manipulation.py ........... [ 13%]
cobra/test/test_medium.py ................. [ 35%]
cobra/test/test_io/test_io_order.py ........................... [ 69%]
cobra/test/test_io/test_json.py x.x [ 73%]
cobra/test/test_io/test_mat.py ss [ 75%]
cobra/test/test_io/test_pickle.py .s.s [ 81%]
cobra/test/test_io/test_sbml.py sss [ 84%]
cobra/test/test_io/test_sbml3.py .......... [ 97%]
cobra/test/test_io/test_yaml.py .x [100%]
=============================== warnings summary ===============================
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 [1;31mDeprecationWarning[0m: invalid escape sequence \[
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 [1;31mDeprecationWarning[0m: invalid escape sequence \]
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:943
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:943 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:3245
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:3245 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
cobra/core/dictlist.py:213
cobra/core/dictlist.py:213 [1;31mSyntaxWarning[0m: "is" with a literal. Did you mean "=="?
cobra/core/gene.py:249
cobra/core/gene.py:249 [1;31mDeprecationWarning[0m: invalid escape sequence \(
cobra/core/gene.py:263
cobra/core/gene.py:263 [1;31mDeprecationWarning[0m: invalid escape sequence \(
cobra/core/reaction.py:38
cobra/core/reaction.py:38 [1;31mDeprecationWarning[0m: invalid escape sequence \s
cobra/flux_analysis/gapfilling.py:13
cobra/flux_analysis/gapfilling.py:13 [1;31mDeprecationWarning[0m: invalid escape sequence \s
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink
cobra/core/model.py:443 [1;31mDeprecationWarning[0m: add_reaction deprecated. Use add_reactions instead
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
cobra/core/model.py:244 [1;31mDeprecationWarning[0m: The 'warn' method is deprecated, use 'warning' instead
-- Docs: https://docs.pytest.org/en/latest/warnings.html
Computing stats ...
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----------------------------------------------------------------------------------------- benchmark: 4 tests ----------------------------------------------------------------------------------------
Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_benchmark_medium_mip 139.8659 (1.0) 141.5256 (1.0) 140.4565 (1.0) 0.5346 (1.13) 140.3201 (1.0) 0.6679 (1.0) 2;0 7.1196 (1.0) 8 1
test_benchmark_medium_linear 144.5160 (1.03) 145.6827 (1.03) 145.0345 (1.03) 0.4711 (1.0) 144.8684 (1.03) 0.8439 (1.26) 2;0 6.8949 (0.97) 7 1
test_benchmark_read 234.1613 (1.67) 259.9396 (1.84) 241.3409 (1.72) 10.6535 (22.61) 238.0407 (1.70) 10.2212 (15.30) 1;0 4.1435 (0.58) 5 1
test_benchmark_write 562.0470 (4.02) 580.1335 (4.10) 567.9031 (4.04) 7.5967 (16.12) 564.8524 (4.03) 10.5340 (15.77) 1;0 1.7609 (0.25) 5 1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
======== 69 passed, 7 skipped, 3 xfailed, 23 warnings in 152.47 seconds ========
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.7.6, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
plugins: benchmark-3.2.2
collected 79 items
cobra/test/test_manipulation.py ........... [ 13%]
cobra/test/test_medium.py ................. [ 35%]
cobra/test/test_io/test_io_order.py ........................... [ 69%]
cobra/test/test_io/test_json.py x.x [ 73%]
cobra/test/test_io/test_mat.py ss [ 75%]
cobra/test/test_io/test_pickle.py .s.s [ 81%]
cobra/test/test_io/test_sbml.py ... [ 84%]
cobra/test/test_io/test_sbml3.py .......... [ 97%]
cobra/test/test_io/test_yaml.py .x [100%]
=============================== warnings summary ===============================
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 [1;31mDeprecationWarning[0m: invalid escape sequence \[
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50
/usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 [1;31mDeprecationWarning[0m: invalid escape sequence \]
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3
/usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:943
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:943 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:3245
/usr/share/python-wheels/pyparsing-2.2.0-py2.py3-none-any.whl/pyparsing.py:3245 [1;31mDeprecationWarning[0m: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
cobra/core/gene.py:249
cobra/core/gene.py:249 [1;31mDeprecationWarning[0m: invalid escape sequence \(
cobra/core/gene.py:263
cobra/core/gene.py:263 [1;31mDeprecationWarning[0m: invalid escape sequence \(
cobra/core/reaction.py:38
cobra/core/reaction.py:38 [1;31mDeprecationWarning[0m: invalid escape sequence \s
cobra/flux_analysis/gapfilling.py:83
cobra/flux_analysis/gapfilling.py:83 [1;31mDeprecationWarning[0m: invalid escape sequence \s
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink
cobra/core/model.py:444 [1;31mDeprecationWarning[0m: add_reaction deprecated. Use add_reactions instead
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium
cobra/core/model.py:246 [1;31mDeprecationWarning[0m: The 'warn' method is deprecated, use 'warning' instead
-- Docs: https://docs.pytest.org/en/latest/warnings.html
Computing stats ...
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----------------------------------------------------------------------------------------- benchmark: 4 tests -----------------------------------------------------------------------------------------
Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_benchmark_medium_mip 149.0111 (1.0) 225.7598 (1.0) 167.1981 (1.0) 28.2304 (1.07) 149.6371 (1.0) 24.8090 (1.29) 1;1 5.9809 (1.0) 7 1
test_benchmark_medium_linear 154.7476 (1.04) 230.1629 (1.02) 169.4049 (1.01) 28.4263 (1.08) 155.0513 (1.04) 19.2066 (1.0) 1;1 5.9030 (0.99) 7 1
test_benchmark_read 257.8856 (1.73) 313.9761 (1.39) 282.5648 (1.69) 26.2960 (1.0) 269.0462 (1.80) 46.9615 (2.45) 1;0 3.5390 (0.59) 5 1
test_benchmark_write 689.7550 (4.63) 793.0827 (3.51) 750.7533 (4.49) 55.2706 (2.10) 789.4526 (5.28) 100.8958 (5.25) 2;0 1.3320 (0.22) 5 1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
======== 72 passed, 4 skipped, 3 xfailed, 22 warnings in 149.20 seconds ========
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/configuration.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/singleton.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/dictlist.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/gene.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/species.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/object.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/metabolite.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/formula.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/model.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/reaction.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core/__pycache__/solution.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis/__pycache__/sampling.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/dict.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/json.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/mat.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/sbml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/sbml3.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io/__pycache__/yaml.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/delete.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/modify.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation/__pycache__/validate.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/annotations.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_io_order.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_json.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_mat.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_pickle.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_sbml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_sbml3.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io/__pycache__/test_yaml.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/conftest.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/__pycache__/test_medium.cpython-38-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/array.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/context.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/solver.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util/__pycache__/util.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/__pycache__/exceptions.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/exceptions.py to exceptions.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/configuration.py to configuration.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py to dictlist.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/formula.py to formula.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/gene.py to gene.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/metabolite.py to metabolite.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/model.py to model.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/object.py to object.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/singleton.py to singleton.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/solution.py to solution.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/core/species.py to species.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/room.py to room.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/sampling.py to sampling.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/dict.py to dict.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/json.py to json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/mat.py to mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/sbml.py to sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/sbml3.py to sbml3.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/io/yaml.py to yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/delete.py to delete.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/modify.py to modify.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/manipulation/validate.py to validate.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/annotations.py to annotations.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_medium.py to test_medium.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/conftest.py to conftest.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_io_order.py to test_io_order.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_json.py to test_json.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_mat.py to test_mat.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_pickle.py to test_pickle.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml.py to test_sbml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_sbml3.py to test_sbml3.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/test_io/test_yaml.py to test_yaml.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/array.py to array.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/context.py to context.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/solver.py to solver.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra/util/util.py to util.cpython-38.pyc
running install_egg_info
running egg_info
creating cobra.egg-info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
/usr/lib/python3.8/dist-packages/cobra/core/dictlist.py:213: SyntaxWarning: "is" with a literal. Did you mean "=="?
warning: no files found matching 'cobra'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.8/dist-packages/cobra-0.14.2.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/configuration.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/singleton.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/configuration.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/singleton.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/dictlist.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/gene.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/species.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/object.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/metabolite.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/formula.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/model.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/reaction.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/solution.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/sampling.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/dict.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/json.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/mat.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/sbml.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/sbml3.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/yaml.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/delete.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/modify.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/validate.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/annotations.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/annotations.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_io_order.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_pickle.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/conftest.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_io_order.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_json.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_mat.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_pickle.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_sbml.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_sbml3.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_yaml.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/conftest.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_medium.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/array.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/context.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/solver.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/util.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/__pycache__/exceptions.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/.benchmarks
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/exceptions.py to exceptions.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/configuration.py to configuration.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/dictlist.py to dictlist.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/formula.py to formula.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/gene.py to gene.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/metabolite.py to metabolite.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/model.py to model.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/object.py to object.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/reaction.py to reaction.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/singleton.py to singleton.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/solution.py to solution.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/species.py to species.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/room.py to room.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/sampling.py to sampling.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/dict.py to dict.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/json.py to json.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/mat.py to mat.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/sbml.py to sbml.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/sbml3.py to sbml3.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/yaml.py to yaml.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/delete.py to delete.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/modify.py to modify.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/validate.py to validate.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/annotations.py to annotations.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/conftest.py to conftest.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_medium.py to test_medium.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/conftest.py to conftest.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_io_order.py to test_io_order.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_json.py to test_json.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_mat.py to test_mat.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_pickle.py to test_pickle.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_sbml.py to test_sbml.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_sbml3.py to test_sbml3.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_yaml.py to test_yaml.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/array.py to array.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/context.py to context.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/solver.py to solver.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/util.py to util.cpython-37.pyc
running install_egg_info
running egg_info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'cobra'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra-0.14.2.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_install --remaining-packages
find debian -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.14.2-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-cobra_0.14.2-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-02-25T05:02:39Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.14.2-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Sat, 16 Feb 2019 20:08:53 +0100
Source: python-cobra
Binary: python3-cobra
Architecture: armhf
Version: 0.14.2-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Liubov Chuprikova <chuprikovalv@gmail.com>
Description:
python3-cobra - constraint-based modeling of biological networks with Python 3
Closes: 912586
Changes:
python-cobra (0.14.2-2) unstable; urgency=medium
.
* Team upload.
* Set correct exit return for autopkgtest
Closes: #912586
* Remove unused or redundant test dependencies
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Checksums-Sha256:
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Files:
55a10b979cc92c66727f6fbb2c400883 7814 python optional python-cobra_0.14.2-2_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-cobra_0.14.2-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 104924 bytes: control archive=3108 bytes.
1079 bytes, 20 lines control
6316 bytes, 70 lines md5sums
252 bytes, 12 lines * postinst #!/bin/sh
401 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.14.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 540
Depends: python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-pandas (>= 0.17.0), python3-ruamel.yaml, python3-six, python3-swiglpk, python3-tabulate, python3:any, python-cobra-data (= 0.14.2-2)
Recommends: python3-simplejson
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: http://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
drwxr-xr-x root/root 0 2019-02-16 19:08 ./
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra-0.14.2.egg-info/
-rw-r--r-- root/root 11706 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra-0.14.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra-0.14.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 76 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra-0.14.2.egg-info/requires.txt
-rw-r--r-- root/root 6 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra-0.14.2.egg-info/top_level.txt
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root 959 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/__init__.py
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/core/
-rw-r--r-- root/root 458 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/__init__.py
-rw-r--r-- root/root 3467 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/configuration.py
-rw-r--r-- root/root 14980 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/dictlist.py
-rw-r--r-- root/root 5588 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/formula.py
-rw-r--r-- root/root 9763 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/gene.py
-rw-r--r-- root/root 10191 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/metabolite.py
-rw-r--r-- root/root 43765 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/model.py
-rw-r--r-- root/root 1347 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/object.py
-rw-r--r-- root/root 41782 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/reaction.py
-rw-r--r-- root/root 528 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/singleton.py
-rw-r--r-- root/root 8450 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/solution.py
-rw-r--r-- root/root 1337 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/core/species.py
-rw-r--r-- root/root 777 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/exceptions.py
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root 783 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root 12947 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/deletion.py
-rw-r--r-- root/root 13305 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root 4605 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/geometric.py
-rw-r--r-- root/root 9086 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root 5515 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root 3799 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root 10048 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root 8020 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root 5020 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/room.py
-rw-r--r-- root/root 37084 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/sampling.py
-rw-r--r-- root/root 12813 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/summary.py
-rw-r--r-- root/root 13579 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/io/
-rw-r--r-- root/root 524 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root 7185 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/io/dict.py
-rw-r--r-- root/root 6733 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/io/json.py
-rw-r--r-- root/root 11084 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root 32898 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root 30138 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/io/sbml3.py
-rw-r--r-- root/root 3298 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/io/yaml.py
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/manipulation/
-rw-r--r-- root/root 440 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root 872 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root 8659 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root 3891 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root 1028 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/medium/
-rw-r--r-- root/root 244 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/medium/__init__.py
-rw-r--r-- root/root 1933 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/medium/annotations.py
-rw-r--r-- root/root 5768 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/medium/boundary_types.py
-rw-r--r-- root/root 8642 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/medium/minimal_medium.py
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/test/
-rw-r--r-- root/root 1721 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/test/__init__.py
-rw-r--r-- root/root 3525 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/test/conftest.py
lrwxrwxrwx root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
drwxr-xr-x root/root 0 2019-02-16 19:08 ./usr/lib/python3/dist-packages/cobra/test/test_io/
-rw-r--r-- root/root 24 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/test/test_io/__init__.py
-rw-r--r-- root/root 3622 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/test/test_io/conftest.py
-rw-r--r-- root/root 2795 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/test/test_io/test_io_order.py
-rw-r--r-- root/root 1316 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/test/test_io/test_json.py
-rw-r--r-- root/root 2260 2019-01-28 22:09 ./usr/lib/python3/dist-packages/cobra/test/test_io/test_mat.py
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 37052
Build-Time: 373
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1407
Job: python-cobra_0.14.2-2
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1829
Source-Version: 0.14.2-2
Space: 37052
Status: successful
Version: 0.14.2-2
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Finished at 2020-02-25T05:02:39Z
Build needed 00:30:29, 37052k disc space