python-cobra →
0.13.4-2 →
armhf → 2018-12-22 10:09:25
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| python-cobra 0.13.4-2 (armhf) Sat, 22 Dec 2018 09:51:50 +0000 |
+==============================================================================+
Package: python-cobra
Version: 0.13.4-2
Source Version: 0.13.4-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-a4e3aa18-884a-40c4-adde-7320b0877b87' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.3 MB in 9s (2803 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1751 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main python-cobra 0.13.4-2 (dsc) [2448 B]
Get:2 http://172.17.0.1/private buster-staging/main python-cobra 0.13.4-2 (tar) [1742 kB]
Get:3 http://172.17.0.1/private buster-staging/main python-cobra 0.13.4-2 (diff) [6032 B]
Fetched 1751 kB in 0s (4385 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-b6GktK/python-cobra-0.13.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-b6GktK' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-S15mgQ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-S15mgQ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-S15mgQ/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 48 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15795 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0)
Filtered Build-Depends: debhelper (>= 11~), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0)
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-S15mgQ/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Sources [637 B]
Get:5 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ Packages [723 B]
Fetched 2693 B in 0s (14.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-8 cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file g++-8
gcc-7-base gcc-8 gcc-8-base gettext gettext-base groff-base intltool-debian
libamd2 libarchive-zip-perl libasan5 libatlas3-base libatomic1 libblas-dev
libblas3 libbsd0 libbtf1 libcamd2 libcc1-0 libccolamd2 libcholmod3
libcolamd2 libcroco3 libcxsparse3 libelf1 libexpat1-dev
libfile-stripnondeterminism-perl libgcc-8-dev libgcc1 libgfortran4
libgfortran5 libglib2.0-0 libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl
libgomp1 libgraphblas2 libicu63 libklu1 liblapack-dev liblapack3 libldl2
libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libmpdec2
libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
librbio2 libsigsegv2 libspqr2 libstdc++-8-dev libstdc++6 libsuitesparse-dev
libsuitesparseconfig5 libtool libubsan1 libumfpack5 libxml2 m4 man-db
mime-support po-debconf python-pip-whl python3 python3-all python3-all-dev
python3-atomicwrites python3-attr python3-certifi python3-chardet
python3-cpuinfo python3-dateutil python3-depinfo python3-dev
python3-distutils python3-future python3-idna python3-jsonschema
python3-lib2to3 python3-minimal python3-more-itertools python3-mpmath
python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pip
python3-pipdeptree python3-pkg-resources python3-pluggy python3-py
python3-pytest python3-pytest-benchmark python3-requests python3-ruamel.yaml
python3-setuptools python3-six python3-swiglpk python3-sympy
python3-tabulate python3-tz python3-urllib3 python3.6 python3.6-dev
python3.6-minimal python3.7 python3.7-dev python3.7-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-8-locales cython-doc dh-make gcc-8-doc libstdc++6-8-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc
libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev
libstdc++-8-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python-attr-doc python-future-doc python-jsonschema-doc
python3-gmpy2 python3-matplotlib python-mpmath-doc gfortran python-numpy-doc
python3-numpy-dbg python-pandas-doc subversion python3-cryptography
python3-openssl python3-socks python-setuptools-doc texlive-fonts-extra
dvipng python-sympy-doc python3.6-venv python3.6-doc binfmt-support
python3.7-venv python3.7-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-scipy
python3-matplotlib python3-numexpr python3-tables python3-bs4
python3-html5lib python3-lxml python3-wheel python3-elasticsearch
python3-pil ipython3
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gcc-7-base gettext
gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
libatlas3-base libblas-dev libblas3 libbsd0 libbtf1 libcamd2 libccolamd2
libcholmod3 libcolamd2 libcroco3 libcxsparse3 libelf1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran4 libgfortran5 libglib2.0-0
libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas2 libicu63
libklu1 liblapack-dev liblapack3 libldl2 libltdl7 libmagic-mgc libmagic1
libmetis5 libmongoose2 libmpdec2 libpipeline1 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev
libpython3.6-minimal libpython3.6-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib librbio2 libsigsegv2 libspqr2
libsuitesparse-dev libsuitesparseconfig5 libtool libumfpack5 libxml2 m4
man-db mime-support po-debconf python-pip-whl python3 python3-all
python3-all-dev python3-atomicwrites python3-attr python3-certifi
python3-chardet python3-cpuinfo python3-dateutil python3-depinfo python3-dev
python3-distutils python3-future python3-idna python3-jsonschema
python3-lib2to3 python3-minimal python3-more-itertools python3-mpmath
python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pip
python3-pipdeptree python3-pkg-resources python3-pluggy python3-py
python3-pytest python3-pytest-benchmark python3-requests python3-ruamel.yaml
python3-setuptools python3-six python3-swiglpk python3-sympy
python3-tabulate python3-tz python3-urllib3 python3.6 python3.6-dev
python3.6-minimal python3.7 python3.7-dev python3.7-minimal
sbuild-build-depends-python-cobra-dummy zlib1g-dev
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 124 newly installed, 0 to remove and 35 not upgraded.
Need to get 174 MB/174 MB of archives.
After this operation, 439 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-S15mgQ/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1004 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-12+rpi1 [30.1 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-12+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-12+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-12+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-12+rpi1 [8108 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-12+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-12+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-12+rpi1 [5942 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-12+rpi1 [1565 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-12+rpi1 [3743 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-12+rpi1 [5848 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-12+rpi1 [5475 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-12+rpi1 [326 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2~rc1-1 [582 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2~rc1-1 [1454 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.1-2 [36.5 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.2~rc1-1 [1662 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.2~rc1-1 [322 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.1-2 [20.0 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.7.1-2 [61.4 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.8~rc1-1 [567 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.8~rc1-1 [1382 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf cython3 armhf 0.28.4-1+b1 [2788 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.0.0-1 [12.5 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.4 [1003 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180927 [95.8 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libsuitesparseconfig5 armhf 1:5.3.0+dfsg-1 [20.3 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libamd2 armhf 1:5.3.0+dfsg-1 [26.9 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libatlas3-base armhf 3.10.3-7+rpi1 [2439 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-12+rpi1 [205 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-2 [113 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libbtf1 armhf 1:5.3.0+dfsg-1 [20.8 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libcamd2 armhf 1:5.3.0+dfsg-1 [27.5 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libccolamd2 armhf 1:5.3.0+dfsg-1 [28.1 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libcolamd2 armhf 1:5.3.0+dfsg-1 [25.0 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libcholmod3 armhf 1:5.3.0+dfsg-1 [215 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libcxsparse3 armhf 1:5.3.0+dfsg-1 [48.5 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-6 [387 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libglpk40 armhf 4.65-2 [339 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libgmpxx4ldbl armhf 2:6.1.2+dfsg-4 [21.8 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libgmp-dev armhf 2:6.1.2+dfsg-4 [570 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libgraphblas2 armhf 1:5.3.0+dfsg-1 [392 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libklu1 armhf 1:5.3.0+dfsg-1 [48.4 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libldl2 armhf 1:5.3.0+dfsg-1 [20.6 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libmongoose2 armhf 1:5.3.0+dfsg-1 [40.6 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libumfpack5 armhf 1:5.3.0+dfsg-1 [126 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf librbio2 armhf 1:5.3.0+dfsg-1 [29.4 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libspqr2 armhf 1:5.3.0+dfsg-1 [65.0 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-2 [1551 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libsuitesparse-dev armhf 1:5.3.0+dfsg-1 [942 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libglpk-dev armhf 4.65-2 [379 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libpython3.7 armhf 3.7.2~rc1-1 [1251 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpython3.7-dev armhf 3.7.2~rc1-1 [47.2 MB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.7.1-2 [20.1 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.8~rc1-1 [1638 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.8~rc1-1 [1181 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.8~rc1-1 [43.7 MB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.7.1-2 [1076 B]
Get:97 http://172.17.0.1/private buster-staging/main armhf python-pip-whl all 9.0.1-2.3 [1678 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.8~rc1-1 [245 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.7.1-2 [1068 B]
Get:100 http://172.17.0.1/private buster-staging/main armhf python3.7-dev armhf 3.7.2~rc1-1 [522 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.7.1-2 [1260 B]
Get:102 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.8~rc1-1 [509 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.7.1-2 [1076 B]
Get:104 http://172.17.0.1/private buster-staging/main armhf python3-atomicwrites all 1.1.5-2 [6892 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf python3-attr all 18.2.0-1 [37.3 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf python3-certifi all 2018.8.24-1 [140 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 40.6.2-1 [152 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-1 [80.2 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf python3-cpuinfo all 4.0.0-1 [18.6 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.12.0-1 [15.7 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf python3-dateutil all 2.6.1-1 [52.8 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf python3-pip all 9.0.1-2.3 [142 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf python3-pipdeptree armhf 0.13.0-2 [15.2 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf python3-depinfo armhf 1.4.0-1 [5296 B]
Get:115 http://172.17.0.1/private buster-staging/main armhf python3-future all 0.15.2-5 [345 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf python3-idna all 2.6-1 [34.3 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf python3-jsonschema all 2.6.0-4 [33.5 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf python3-more-itertools all 4.2.0-1 [42.2 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf python3-mpmath all 1.1.0-1 [416 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.15.4-2 [1997 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python3-swiglpk armhf 1.4.4-2+b1 [53.2 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf python3-sympy all 1.3-1 [3500 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf python3-optlang all 1.4.1-1 [67.4 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2018.7-1 [27.0 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python3-pandas-lib armhf 0.23.3-1+b1 [4582 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf python3-pandas all 0.23.3-1 [1743 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf python3-pluggy all 0.8.0-1 [20.6 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf python3-py all 1.7.0-1 [86.5 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf python3-pytest all 3.6.4-1 [221 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf python3-pytest-benchmark all 3.1.1-1 [40.7 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf python3-urllib3 all 1.24-1 [96.8 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf python3-requests all 2.20.0-2 [66.7 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf python3-ruamel.yaml armhf 0.15.34-1+b1 [223 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 40.6.2-1 [303 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf python3-tabulate all 0.8.2-1 [32.1 kB]
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No schema files found: removed existing output file.
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Setting up libpipeline1:armhf (1.5.0-2) ...
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Setting up libpython3.6-minimal:armhf (3.6.8~rc1-1) ...
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Setting up libltdl7:armhf (2.4.6-6) ...
Setting up libcolamd2:armhf (1:5.3.0+dfsg-1) ...
Setting up libexpat1-dev:armhf (2.2.6-1) ...
Setting up libccolamd2:armhf (1:5.3.0+dfsg-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgmpxx4ldbl:armhf (2:6.1.2+dfsg-4) ...
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Setting up libbtf1:armhf (1:5.3.0+dfsg-1) ...
Setting up libldl2:armhf (1:5.3.0+dfsg-1) ...
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Setting up libpython3.6-stdlib:armhf (3.6.8~rc1-1) ...
Setting up libcxsparse3:armhf (1:5.3.0+dfsg-1) ...
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Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up gettext (0.19.8.1-9) ...
Setting up librbio2:armhf (1:5.3.0+dfsg-1) ...
Setting up libcamd2:armhf (1:5.3.0+dfsg-1) ...
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Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpython3.7:armhf (3.7.2~rc1-1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/atlas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up python3.6 (3.6.8~rc1-1) ...
Setting up libglpk40:armhf (4.65-2) ...
Setting up po-debconf (1.0.21) ...
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Setting up libblas-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up python3-ruamel.yaml (0.15.34-1+b1) ...
Setting up python3-swiglpk (1.4.4-2+b1) ...
Setting up python3-numpy (1:1.15.4-2) ...
Setting up liblapack3:armhf (3.8.0-2) ...
Setting up python3-idna (2.6-1) ...
Setting up python3-six (1.12.0-1) ...
Setting up libklu1:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-certifi (2018.8.24-1) ...
Setting up python3-more-itertools (4.2.0-1) ...
Setting up python3-pkg-resources (40.6.2-1) ...
Setting up python3.7-dev (3.7.2~rc1-1) ...
Setting up python3-mpmath (1.1.0-1) ...
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Setting up libcholmod3:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-pandas-lib (0.23.3-1+b1) ...
Setting up gcc-8 (8.2.0-12+rpi1) ...
Setting up python3-jsonschema (2.6.0-4) ...
update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up g++-8 (8.2.0-12+rpi1) ...
Setting up libpython3-all-dev:armhf (3.7.1-2) ...
Setting up python3-chardet (3.0.4-1) ...
Setting up python3-tabulate (0.8.2-1) ...
Setting up python3-attr (18.2.0-1) ...
Setting up cython3 (0.28.4-1+b1) ...
Setting up python3-urllib3 (1.24-1) ...
Setting up python3-sympy (1.3-1) ...
Setting up python3.6-dev (3.6.8~rc1-1) ...
Setting up python3-lib2to3 (3.7.1-1) ...
Setting up python3-optlang (1.4.1-1) ...
Setting up python3-tz (2018.7-1) ...
Setting up python3-distutils (3.7.1-1) ...
Setting up python3-cpuinfo (4.0.0-1) ...
Setting up libspqr2:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-dateutil (2.6.1-1) ...
Setting up python3-atomicwrites (1.1.5-2) ...
Setting up liblapack-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up python3-py (1.7.0-1) ...
Setting up python3-pytest (3.6.4-1) ...
Setting up libumfpack5:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-future (0.15.2-5) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-pip (9.0.1-2.3) ...
Setting up python3-requests (2.20.0-2) ...
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Setting up python3-pandas (0.23.3-1) ...
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Setting up python3-pytest-benchmark (3.1.1-1) ...
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Setting up python3-pipdeptree (0.13.0-2) ...
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Setting up python3-depinfo (1.4.0-1) ...
Setting up python3-all-dev (3.7.1-2) ...
Setting up dh-autoreconf (19) ...
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Setting up debhelper (11.5.4) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-10+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-12+rpi1 gcc-8_8.2.0-12+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-12+rpi1 libstdc++6_8.2.0-12+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-10+rpi1 binutils-arm-linux-gnueabihf_2.31.1-10+rpi1 binutils-common_2.31.1-10+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-12+rpi1 cython3_0.28.4-1+b1 dash_0.5.10.2-2 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.69 debhelper_11.5.4 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-12+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-12+rpi1 gcc-8-base_8.2.0-12+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.11-1 gnupg-agent_2.2.11-1 gnupg-l10n_2.2.11-1 gnupg-utils_2.2.11-1 gpg_2.2.11-1 gpg-agent_2.2.11-1 gpg-wks-client_2.2.11-1 gpg-wks-server_2.2.11-1 gpgconf_2.2.11-1 gpgsm_2.2.11-1 gpgv_2.2.11-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libamd2_1:5.3.0+dfsg-1 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha2 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-12+rpi1 libassuan0_2.5.1-2 libatlas3-base_3.10.3-7+rpi1 libatomic1_8.2.0-12+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-10+rpi1 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.33-0.2 libbsd0_0.9.1-1 libbtf1_1:5.3.0+dfsg-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-2 libc-dev-bin_2.28-2 libc6_2.28-2 libc6-dev_2.28-2 libcamd2_1:5.3.0+dfsg-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-12+rpi1 libccolamd2_1:5.3.0+dfsg-1 libcholmod3_1:5.3.0+dfsg-1 libcolamd2_1:5.3.0+dfsg-1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libcxsparse3_1:5.3.0+dfsg-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b5 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-12+rpi1 libgcc1_1:8.2.0-12+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran4_7.3.0-19 libgfortran5_8.2.0-12+rpi1 libglib2.0-0_2.58.1-2 libglpk-dev_4.65-2 libglpk40_4.65-2 libgmp-dev_2:6.1.2+dfsg-4 libgmp10_2:6.1.2+dfsg-4 libgmpxx4ldbl_2:6.1.2+dfsg-4 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-12+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgraphblas2_1:5.3.0+dfsg-1 libgssapi-krb5-2_1.16.1-1 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-2+b1 libisl19_0.20-2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libklu1_1:5.3.0+dfsg-1 libkmod2_25-2 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1+b1 libldap-common_2.4.46+dfsg-5+rpi1 libldl2_1:5.3.0+dfsg-1 libltdl7_2.4.6-6 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmetis5_5.1.0.dfsg-5 libmongoose2_1:5.3.0+dfsg-1 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libnss-systemd_239-15+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-15+rpi1 libpam0g_1.1.8-3.8 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libplymouth4_0.9.4-1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpython3-all-dev_3.7.1-2 libpython3-dev_3.7.1-2 libpython3-stdlib_3.7.1-2 libpython3.6_3.6.8~rc1-1 libpython3.6-dev_3.6.8~rc1-1 libpython3.6-minimal_3.6.8~rc1-1 libpython3.6-stdlib_3.6.8~rc1-1 libpython3.7_3.7.2~rc1-1 libpython3.7-dev_3.7.2~rc1-1 libpython3.7-minimal_3.7.2~rc1-1 libpython3.7-stdlib_3.7.2~rc1-1 librbio2_1:5.3.0+dfsg-1 libreadline7_7.0-5 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libspqr2_1:5.3.0+dfsg-1 libsqlite3-0_3.26.0-3 libss2_1.44.4-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-12+rpi1 libstdc++6_8.2.0-12+rpi1 libsuitesparse-dev_1:5.3.0+dfsg-1 libsuitesparseconfig5_1:5.3.0+dfsg-1 libsystemd0_239-15+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libubsan1_8.2.0-12+rpi1 libudev1_239-15+rpi1 libumfpack5_1:5.3.0+dfsg-1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33-0.2 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.33-0.2 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python-pip-whl_9.0.1-2.3 python3_3.7.1-2 python3-all_3.7.1-2 python3-all-dev_3.7.1-2 python3-atomicwrites_1.1.5-2 python3-attr_18.2.0-1 python3-certifi_2018.8.24-1 python3-chardet_3.0.4-1 python3-cpuinfo_4.0.0-1 python3-dateutil_2.6.1-1 python3-depinfo_1.4.0-1 python3-dev_3.7.1-2 python3-distutils_3.7.1-1 python3-future_0.15.2-5 python3-idna_2.6-1 python3-jsonschema_2.6.0-4 python3-lib2to3_3.7.1-1 python3-minimal_3.7.1-2 python3-more-itertools_4.2.0-1 python3-mpmath_1.1.0-1 python3-numpy_1:1.15.4-2 python3-optlang_1.4.1-1 python3-pandas_0.23.3-1 python3-pandas-lib_0.23.3-1+b1 python3-pip_9.0.1-2.3 python3-pipdeptree_0.13.0-2 python3-pkg-resources_40.6.2-1 python3-pluggy_0.8.0-1 python3-py_1.7.0-1 python3-pytest_3.6.4-1 python3-pytest-benchmark_3.1.1-1 python3-requests_2.20.0-2 python3-ruamel.yaml_0.15.34-1+b1 python3-setuptools_40.6.2-1 python3-six_1.12.0-1 python3-swiglpk_1.4.4-2+b1 python3-sympy_1.3-1 python3-tabulate_0.8.2-1 python3-tz_2018.7-1 python3-urllib3_1.24-1 python3.6_3.6.8~rc1-1 python3.6-dev_3.6.8~rc1-1 python3.6-minimal_3.6.8~rc1-1 python3.7_3.7.2~rc1-1 python3.7-dev_3.7.2~rc1-1 python3.7-minimal_3.7.2~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-15+rpi1 systemd-sysv_239-15+rpi1 sysvinit-utils_2.93-1 tar_1.30+dfsg-3+rpi1 tzdata_2018g-1 udev_239-15+rpi1 util-linux_2.33-0.2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 1 13:07:42 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.13.4-2.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.13.4.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.13.4-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying drop_failing_test2.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-a4e3aa18-884a-40c4-adde-7320b0877b87
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.13.4-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.6 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.6' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.6 setup.py config
running config
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.6 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
copying cobra/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_solver_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_solver_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_solver_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_solver_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build; python3.6 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.6.8rc1, pytest-3.6.4, py-1.7.0, pluggy-0.8.0
benchmark: 3.1.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
plugins: benchmark-3.1.1
collected 304 items
cobra/test/test_io.py ............ssssssssssssssss............ssss...sss [ 16%]
sss.sss...ssss...s.. [ 23%]
cobra/test/test_io_order.py .ss...ss...ss...ss...ss...ss...ss...ss...ss. [ 37%]
. [ 37%]
cobra/test/test_manipulation.py ......... [ 40%]
cobra/test/test_medium.py .............. [ 45%]
cobra/test/test_model.py ............................................... [ 60%]
.............................s [ 70%]
cobra/test/test_solver_model.py .s..s.....................X............. [ 83%]
......s..s.s.s.s [ 89%]
cobra/test/test_solver_utils.py ........... [ 92%]
cobra/test/test_util.py ...................... [100%]
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------------------------------------------------------------------------------------------------------------------ benchmark: 23 tests -------------------------------------------------------------------------------------------------------------------
Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[glpk] 29.5192 (1.0) 59.2433 (1.08) 30.3770 (1.0) 1.5957 (1.10) 30.1823 (1.0) 0.2645 (1.0) 21;55 32,919.6187 (1.0) 930 1
test_subtract_metabolite_benchmark[gurobi] 29.5416 (1.00) 273.3245 (4.99) 30.8357 (1.02) 8.2456 (5.71) 30.3574 (1.01) 0.3204 (1.21) 12;46 32,429.9166 (0.99) 903 1
test_subtract_metabolite_benchmark[cplex] 29.7017 (1.01) 54.8214 (1.0) 30.4913 (1.00) 1.4450 (1.0) 30.3015 (1.00) 0.2645 (1.0) 22;55 32,796.1991 (1.00) 938 1
test_change_objective_benchmark[cplex] 1,295.0189 (43.87) 1,569.0438 (28.62) 1,325.6477 (43.64) 22.4224 (15.52) 1,318.5963 (43.69) 28.2479 (106.80) 160;12 754.3482 (0.02) 1085 1
test_change_objective_benchmark[gurobi] 1,297.2802 (43.95) 97,187.1130 (>1000.0) 1,424.6101 (46.90) 2,947.0171 (>1000.0) 1,326.9298 (43.96) 30.8417 (116.61) 1;22 701.9464 (0.02) 1058 1
test_change_objective_benchmark[glpk] 1,299.1168 (44.01) 1,403.6335 (25.60) 1,328.6336 (43.74) 17.9015 (12.39) 1,321.5374 (43.79) 28.7332 (108.63) 314;3 752.6530 (0.02) 1022 1
test_add_remove_reaction_benchmark[gurobi] 2,135.6530 (72.35) 2,867.6987 (52.31) 2,186.4515 (71.98) 46.8458 (32.42) 2,185.4024 (72.41) 37.6999 (142.54) 8;4 457.3621 (0.01) 310 1
test_add_remove_reaction_benchmark[cplex] 2,147.1716 (72.74) 96,079.7444 (>1000.0) 2,523.9157 (83.09) 5,397.3809 (>1000.0) 2,191.1524 (72.60) 37.0601 (140.12) 1;14 396.2098 (0.01) 303 1
test_add_remove_reaction_benchmark[glpk] 2,150.8522 (72.86) 2,528.5594 (46.12) 2,205.2790 (72.60) 49.1196 (33.99) 2,199.8920 (72.89) 47.4174 (179.27) 31;13 453.4574 (0.01) 311 1
test_benchmark_medium_mip 32,285.7276 (>1000.0) 35,924.3825 (655.30) 32,542.9237 (>1000.0) 652.7193 (451.72) 32,388.9144 (>1000.0) 133.6597 (505.34) 1;3 30.7286 (0.00) 30 1
test_benchmark_medium_linear 33,556.5172 (>1000.0) 127,717.5695 (>1000.0) 37,128.0372 (>1000.0) 17,436.6254 (>1000.0) 33,685.0174 (>1000.0) 243.5092 (920.65) 1;2 26.9338 (0.00) 29 1
test_benchmark_read 79,739.4738 (>1000.0) 201,732.2481 (>1000.0) 100,538.6859 (>1000.0) 49,577.3210 (>1000.0) 80,539.4687 (>1000.0) 1,192.9870 (>1000.0) 1;1 9.9464 (0.00) 6 1
test_copy_benchmark[glpk] 95,693.6404 (>1000.0) 100,400.1498 (>1000.0) 97,883.1388 (>1000.0) 1,873.6632 (>1000.0) 97,006.2800 (>1000.0) 3,490.0457 (>1000.0) 6;0 10.2163 (0.00) 11 1
test_copy_benchmark[gurobi] 96,109.1183 (>1000.0) 492,743.8758 (>1000.0) 136,842.2788 (>1000.0) 125,058.1454 (>1000.0) 96,741.7099 (>1000.0) 3,083.1806 (>1000.0) 1;1 7.3077 (0.00) 10 1
test_copy_benchmark[cplex] 96,708.4356 (>1000.0) 100,269.6641 (>1000.0) 97,977.3687 (>1000.0) 1,472.2822 (>1000.0) 97,103.2865 (>1000.0) 2,698.1616 (>1000.0) 3;0 10.2064 (0.00) 11 1
test_deepcopy_benchmark 138,812.5382 (>1000.0) 144,033.5326 (>1000.0) 141,358.9759 (>1000.0) 2,164.2371 (>1000.0) 141,080.5397 (>1000.0) 4,010.6503 (>1000.0) 3;0 7.0742 (0.00) 7 1
test_benchmark_write 175,332.1290 (>1000.0) 293,621.2942 (>1000.0) 195,467.5484 (>1000.0) 48,089.4788 (>1000.0) 175,764.0615 (>1000.0) 1,621.8908 (>1000.0) 1;1 5.1159 (0.00) 6 1
test_add_metabolite_benchmark[gurobi] 613,404.1138 (>1000.0) 706,391.6139 (>1000.0) 635,620.7229 (>1000.0) 39,917.8020 (>1000.0) 618,358.4370 (>1000.0) 32,970.6427 (>1000.0) 1;1 1.5733 (0.00) 5 1
test_add_metabolite_benchmark[glpk] 618,492.0706 (>1000.0) 715,929.3331 (>1000.0) 639,847.3948 (>1000.0) 42,566.1767 (>1000.0) 622,003.6373 (>1000.0) 26,592.7967 (>1000.0) 1;1 1.5629 (0.00) 5 1
test_add_metabolite_benchmark[cplex] 620,764.8329 (>1000.0) 720,958.9481 (>1000.0) 642,749.6217 (>1000.0) 43,745.0544 (>1000.0) 624,112.6433 (>1000.0) 25,961.0666 (>1000.0) 1;1 1.5558 (0.00) 5 1
test_copy_benchmark_large_model[glpk] 2,252,144.2510 (>1000.0) 2,894,805.2153 (>1000.0) 2,596,645.8350 (>1000.0) 320,200.2080 (>1000.0) 2,725,668.9109 (>1000.0) 613,738.8917 (>1000.0) 2;0 0.3851 (0.00) 5 1
test_copy_benchmark_large_model[cplex] 2,253,711.8159 (>1000.0) 3,096,943.1475 (>1000.0) 2,431,676.6039 (>1000.0) 372,197.3901 (>1000.0) 2,262,351.7588 (>1000.0) 237,786.7401 (>1000.0) 1;1 0.4112 (0.00) 5 1
test_copy_benchmark_large_model[gurobi] 2,255,793.0090 (>1000.0) 3,327,529.8066 (>1000.0) 2,478,815.2404 (>1000.0) 474,494.0142 (>1000.0) 2,270,857.7402 (>1000.0) 273,282.8595 (>1000.0) 1;1 0.4034 (0.00) 5 1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
=============================== warnings summary ===============================
.pybuild/cpython3_3.6_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::()::test_medium_alternative_mip
cobra/medium/minimal_medium.py:217 [1;31mFutureWarning[0m: Sorting because non-concatenation axis is not aligned. A future version
of pandas will change to not sort by default.
To accept the future behavior, pass 'sort=False'.
To retain the current behavior and silence the warning, pass 'sort=True'.
-- Docs: http://doc.pytest.org/en/latest/warnings.html
======= 243 passed, 60 skipped, 1 xpassed, 1 warnings in 172.69 seconds ========
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.7.2rc1, pytest-3.6.4, py-1.7.0, pluggy-0.8.0
benchmark: 3.1.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
plugins: benchmark-3.1.1
collected 304 items
cobra/test/test_io.py ............ssssssssssssssss............ssss...sss [ 16%]
sss.sss...ssss...s.. [ 23%]
cobra/test/test_io_order.py .ss...ss...ss...ss...ss...ss...ss...ss...ss. [ 37%]
. [ 37%]
cobra/test/test_manipulation.py ......... [ 40%]
cobra/test/test_medium.py .............. [ 45%]
cobra/test/test_model.py ............................................... [ 60%]
.............................s [ 70%]
cobra/test/test_solver_model.py .s..s.....................X............. [ 83%]
......s..s.s.s.s [ 89%]
cobra/test/test_solver_utils.py ........... [ 92%]
cobra/test/test_util.py ...................... [100%]
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------------------------------------------------------------------------------------------------------------------ benchmark: 23 tests -------------------------------------------------------------------------------------------------------------------
Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_subtract_metabolite_benchmark[glpk] 26.1590 (1.0) 53.1599 (1.06) 26.9672 (1.00) 1.4740 (1.07) 26.7811 (1.0) 0.2608 (1.09) 25;59 37,082.0892 (1.00) 1037 1
test_subtract_metabolite_benchmark[gurobi] 26.2409 (1.00) 51.4984 (1.03) 26.9561 (1.0) 1.3838 (1.0) 26.7997 (1.00) 0.2384 (1.0) 22;57 37,097.3215 (1.0) 1022 1
test_subtract_metabolite_benchmark[cplex] 26.2819 (1.00) 50.1201 (1.0) 27.0605 (1.00) 1.5401 (1.11) 26.8593 (1.00) 0.2794 (1.17) 24;60 36,954.1807 (1.00) 1029 1
test_change_objective_benchmark[cplex] 1,157.1385 (44.23) 1,397.8258 (27.89) 1,193.9431 (44.29) 33.0943 (23.91) 1,178.8011 (44.02) 33.8135 (141.82) 163;81 837.5608 (0.02) 1213 1
test_change_objective_benchmark[gurobi] 1,161.5008 (44.40) 87,715.7189 (>1000.0) 1,267.5668 (47.02) 2,524.3890 (>1000.0) 1,177.6462 (43.97) 31.0000 (130.02) 1;89 788.9131 (0.02) 1175 1
test_change_objective_benchmark[glpk] 1,164.7642 (44.53) 1,394.6705 (27.83) 1,199.5419 (44.50) 32.8023 (23.70) 1,193.0726 (44.55) 38.3928 (161.03) 170;46 833.6516 (0.02) 1126 1
test_add_remove_reaction_benchmark[gurobi] 1,901.5856 (72.69) 2,836.4696 (56.59) 1,968.3473 (73.02) 94.6490 (68.40) 1,948.9489 (72.77) 43.2022 (181.20) 22;26 508.0404 (0.01) 346 1
test_add_remove_reaction_benchmark[glpk] 1,907.5572 (72.92) 2,253.5026 (44.96) 1,953.0082 (72.45) 40.2847 (29.11) 1,948.3995 (72.75) 40.1009 (168.20) 23;8 512.0306 (0.01) 340 1
test_add_remove_reaction_benchmark[cplex] 1,918.8784 (73.35) 97,517.5276 (>1000.0) 2,273.0143 (84.32) 5,189.0114 (>1000.0) 1,971.5801 (73.62) 57.4673 (241.04) 1;22 439.9444 (0.01) 339 1
test_benchmark_medium_mip 29,680.4421 (>1000.0) 30,378.8073 (606.12) 29,884.5222 (>1000.0) 160.4908 (115.97) 29,838.9886 (>1000.0) 151.3772 (634.92) 4;3 33.4621 (0.00) 32 1
test_benchmark_medium_linear 30,786.4510 (>1000.0) 31,544.1377 (629.37) 30,955.7289 (>1000.0) 178.8548 (129.24) 30,896.0378 (>1000.0) 147.2048 (617.42) 3;2 32.3042 (0.00) 31 1
test_benchmark_read 71,811.9144 (>1000.0) 75,473.8376 (>1000.0) 73,362.4681 (>1000.0) 1,100.0787 (794.94) 73,295.5839 (>1000.0) 1,673.1732 (>1000.0) 5;0 13.6309 (0.00) 14 1
test_copy_benchmark[gurobi] 84,863.6962 (>1000.0) 89,638.9559 (>1000.0) 86,623.8124 (>1000.0) 2,026.3043 (>1000.0) 85,393.7864 (>1000.0) 3,969.2167 (>1000.0) 4;0 11.5442 (0.00) 12 1
test_copy_benchmark[cplex] 85,140.6492 (>1000.0) 94,368.8788 (>1000.0) 87,693.4559 (>1000.0) 2,940.9157 (>1000.0) 86,015.0438 (>1000.0) 4,652.2543 (>1000.0) 1;0 11.4034 (0.00) 12 1
test_copy_benchmark[glpk] 85,396.5804 (>1000.0) 473,391.7080 (>1000.0) 120,682.4550 (>1000.0) 111,102.6423 (>1000.0) 88,809.3058 (>1000.0) 3,883.8219 (>1000.0) 1;1 8.2862 (0.00) 12 1
test_deepcopy_benchmark 122,544.0279 (>1000.0) 128,740.4075 (>1000.0) 125,764.5166 (>1000.0) 2,550.9972 (>1000.0) 125,945.2421 (>1000.0) 4,586.9201 (>1000.0) 4;0 7.9514 (0.00) 8 1
test_benchmark_write 162,540.2570 (>1000.0) 166,918.4305 (>1000.0) 164,338.6396 (>1000.0) 1,701.3287 (>1000.0) 163,701.3666 (>1000.0) 2,628.6878 (>1000.0) 2;0 6.0850 (0.00) 6 1
test_add_metabolite_benchmark[gurobi] 531,068.6566 (>1000.0) 625,328.5035 (>1000.0) 550,562.3065 (>1000.0) 41,798.1712 (>1000.0) 532,119.9447 (>1000.0) 23,670.3670 (>1000.0) 1;1 1.8163 (0.00) 5 1
test_add_metabolite_benchmark[cplex] 531,535.2418 (>1000.0) 539,865.8887 (>1000.0) 535,698.6083 (>1000.0) 4,011.3027 (>1000.0) 535,207.7782 (>1000.0) 7,824.2430 (>1000.0) 3;0 1.8667 (0.00) 5 1
test_add_metabolite_benchmark[glpk] 533,542.0370 (>1000.0) 536,194.2947 (>1000.0) 534,728.4205 (>1000.0) 984.6012 (711.50) 534,482.6728 (>1000.0) 1,204.4208 (>1000.0) 2;0 1.8701 (0.00) 5 1
test_copy_benchmark_large_model[glpk] 1,989,110.7418 (>1000.0) 2,734,179.2323 (>1000.0) 2,274,099.5497 (>1000.0) 352,617.3222 (>1000.0) 2,051,635.8241 (>1000.0) 602,299.8579 (>1000.0) 1;0 0.4397 (0.00) 5 1
test_copy_benchmark_large_model[cplex] 2,018,534.5635 (>1000.0) 2,991,805.6540 (>1000.0) 2,418,952.9389 (>1000.0) 493,545.7384 (>1000.0) 2,128,126.5840 (>1000.0) 909,312.8499 (>1000.0) 2;0 0.4134 (0.00) 5 1
test_copy_benchmark_large_model[gurobi] 2,030,744.9810 (>1000.0) 3,208,122.7936 (>1000.0) 2,295,008.6437 (>1000.0) 513,028.9183 (>1000.0) 2,040,806.7442 (>1000.0) 381,095.7596 (>1000.0) 1;1 0.4357 (0.00) 5 1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
=============================== warnings summary ===============================
.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestMinimalMedia::()::test_medium_alternative_mip
cobra/medium/minimal_medium.py:217 [1;31mFutureWarning[0m: Sorting because non-concatenation axis is not aligned. A future version
of pandas will change to not sort by default.
To accept the future behavior, pass 'sort=False'.
To retain the current behavior and silence the warning, pass 'sort=True'.
-- Docs: http://doc.pytest.org/en/latest/warnings.html
======= 243 passed, 60 skipped, 1 xpassed, 1 warnings in 154.04 seconds ========
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_installdirs -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.6 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/.benchmarks
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/sampling.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/species.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/dictlist.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/gene.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/metabolite.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/formula.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/model.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/reaction.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/solution.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/__pycache__/object.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_io_order.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_solver_utils.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_io.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_io.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_io_order.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_model.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_util.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_solver_model.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/conftest.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_medium.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/__pycache__/test_solver_utils.cpython-36-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_solver_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/__pycache__/util.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/__pycache__/array.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/__pycache__/context.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util/__pycache__/solver.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/__pycache__/validate.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/__pycache__/delete.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/__pycache__/modify.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/config.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/__pycache__/exceptions.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__pycache__/dict.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__pycache__/__init__.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__pycache__/sbml.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__pycache__/yaml.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__pycache__/sbml3.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__pycache__/json.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/__pycache__/mat.cpython-36.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/medium/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/room.py to room.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/sampling.py to sampling.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/object.py to object.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/species.py to species.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/dictlist.py to dictlist.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/gene.py to gene.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/reaction.py to reaction.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/metabolite.py to metabolite.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/solution.py to solution.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/formula.py to formula.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/core/model.py to model.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_model.py to test_model.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_io_order.py to test_io_order.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_solver_utils.py to test_solver_utils.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/conftest.py to conftest.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_io.py to test_io.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_medium.py to test_medium.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_solver_model.py to test_solver_model.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/test/test_util.py to test_util.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/array.py to array.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/context.py to context.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/util.py to util.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/util/solver.py to solver.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/validate.py to validate.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/modify.py to modify.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/manipulation/delete.py to delete.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/config.py to config.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/exceptions.py to exceptions.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/json.py to json.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/sbml.py to sbml.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/sbml3.py to sbml3.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/dict.py to dict.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/yaml.py to yaml.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/__init__.py to __init__.cpython-36.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra/io/mat.py to mat.cpython-36.pyc
running install_egg_info
running egg_info
creating cobra.egg-info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
writing manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'cobra'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.6/dist-packages/cobra-0.13.4.egg-info
Skipping SOURCES.txt
running install_scripts
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-cobra
running install
running build
running build_py
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/.benchmarks
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/sampling.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/object.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/species.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/gene.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/reaction.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/solution.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/reaction.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/metabolite.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/gene.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/dictlist.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/formula.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/model.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/species.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/object.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/solution.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/formula.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io_order.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_solver_utils.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_medium.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_io.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_util.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_solver_model.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/conftest.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_io_order.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_model.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_solver_utils.cpython-37-PYTEST.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_solver_model.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/array.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/context.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/util.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/solver.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/util.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/array.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/solver.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/context.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/delete.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/validate.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/modify.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/config.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/__pycache__/exceptions.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/exceptions.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/json.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/sbml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/dict.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/yaml.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
creating /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/json.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/dict.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/mat.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/sbml3.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/yaml.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/sbml.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io/mat.py -> /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/room.py to room.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/sampling.py to sampling.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/object.py to object.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/species.py to species.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/dictlist.py to dictlist.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/gene.py to gene.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/reaction.py to reaction.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/metabolite.py to metabolite.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/solution.py to solution.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/formula.py to formula.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/model.py to model.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_model.py to test_model.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io_order.py to test_io_order.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_solver_utils.py to test_solver_utils.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/conftest.py to conftest.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io.py to test_io.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_medium.py to test_medium.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_solver_model.py to test_solver_model.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_util.py to test_util.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/array.py to array.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/context.py to context.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/util.py to util.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/solver.py to solver.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/validate.py to validate.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/modify.py to modify.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/delete.py to delete.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/config.py to config.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/exceptions.py to exceptions.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/json.py to json.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/sbml.py to sbml.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/sbml3.py to sbml3.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/dict.py to dict.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/yaml.py to yaml.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/mat.py to mat.cpython-37.pyc
running install_egg_info
running egg_info
writing cobra.egg-info/PKG-INFO
writing dependency_links to cobra.egg-info/dependency_links.txt
writing requirements to cobra.egg-info/requires.txt
writing top-level names to cobra.egg-info/top_level.txt
reading manifest file 'cobra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'cobra'
writing manifest file 'cobra.egg-info/SOURCES.txt'
Copying cobra.egg-info to /<<PKGBUILDDIR>>/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra-0.13.4.egg-info
Skipping SOURCES.txt
running install_scripts
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -X update_pickles.py --package=python-cobra-data
dh_install: No packages to build. Architecture mismatch: armhf, want: all any
dh_install --remaining-packages
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_installcatalogs -a -O--buildsystem=pybuild
dh_installcron -a -O--buildsystem=pybuild
dh_installdebconf -a -O--buildsystem=pybuild
dh_installemacsen -a -O--buildsystem=pybuild
dh_installifupdown -a -O--buildsystem=pybuild
dh_installinfo -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemd -a -O--buildsystem=pybuild
dh_installmenu -a -O--buildsystem=pybuild
dh_installmime -a -O--buildsystem=pybuild
dh_installmodules -a -O--buildsystem=pybuild
dh_installlogcheck -a -O--buildsystem=pybuild
dh_installlogrotate -a -O--buildsystem=pybuild
dh_installpam -a -O--buildsystem=pybuild
dh_installppp -a -O--buildsystem=pybuild
dh_installudev -a -O--buildsystem=pybuild
dh_installgsettings -a -O--buildsystem=pybuild
dh_bugfiles -a -O--buildsystem=pybuild
dh_ucf -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_gconf -a -O--buildsystem=pybuild
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_usrlocal -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_installwm -a -O--buildsystem=pybuild
dh_installxfonts -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.13.4-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../python-cobra_0.13.4-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-12-22T10:09:23Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cobra_0.13.4-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Thu, 01 Nov 2018 14:00:10 +0100
Source: python-cobra
Binary: python3-cobra python-cobra-data
Architecture: armhf
Version: 0.13.4-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python-cobra-data - constraint-based modeling of biological networks (data)
python3-cobra - constraint-based modeling of biological networks with Python 3
Closes: 912574
Changes:
python-cobra (0.13.4-2) unstable; urgency=medium
.
[ Matthias Klose ]
* Team upload
* Add python3-pytest-benchmark to the autopkg test dependencies.
Closes: #912574
.
[ Andreas Tille ]
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
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Checksums-Sha256:
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Files:
6054e292878f81633b144a367c65a1ba 7286 python optional python-cobra_0.13.4-2_armhf.buildinfo
76d95fa7bd82cc8f4b93e3ee53c42b23 113636 python optional python3-cobra_0.13.4-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-cobra_0.13.4-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 113636 bytes: control archive=2980 bytes.
1048 bytes, 19 lines control
5803 bytes, 65 lines md5sums
252 bytes, 12 lines * postinst #!/bin/sh
401 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cobra
Source: python-cobra
Version: 0.13.4-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 614
Depends: python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-pandas (>= 0.17.0), python3-ruamel.yaml, python3-six, python3-swiglpk, python3-tabulate, python3:any, python-cobra-data (= 0.13.4-2)
Suggests: python3-matplotlib, qsopt-ex
Section: python
Priority: optional
Homepage: http://opencobra.github.io/cobrapy/
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
drwxr-xr-x root/root 0 2018-11-01 13:00 ./
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra-0.13.4.egg-info/
-rw-r--r-- root/root 11706 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra-0.13.4.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra-0.13.4.egg-info/dependency_links.txt
-rw-r--r-- root/root 61 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra-0.13.4.egg-info/requires.txt
-rw-r--r-- root/root 6 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra-0.13.4.egg-info/top_level.txt
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/
-rw-r--r-- root/root 923 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/__init__.py
-rw-r--r-- root/root 161 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/config.py
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/core/
-rw-r--r-- root/root 407 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/__init__.py
-rw-r--r-- root/root 14980 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/dictlist.py
-rw-r--r-- root/root 5587 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/formula.py
-rw-r--r-- root/root 9762 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/gene.py
-rw-r--r-- root/root 10228 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/metabolite.py
-rw-r--r-- root/root 42019 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/model.py
-rw-r--r-- root/root 1347 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/object.py
-rw-r--r-- root/root 41478 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/reaction.py
-rw-r--r-- root/root 10636 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/solution.py
-rw-r--r-- root/root 1337 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/core/species.py
-rw-r--r-- root/root 777 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/exceptions.py
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/flux_analysis/
-rw-r--r-- root/root 857 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/__init__.py
-rw-r--r-- root/root 13051 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/deletion.py
-rw-r--r-- root/root 12605 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/gapfilling.py
-rw-r--r-- root/root 4604 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/geometric.py
-rw-r--r-- root/root 11592 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/loopless.py
-rw-r--r-- root/root 5516 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/moma.py
-rw-r--r-- root/root 3798 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/parsimonious.py
-rw-r--r-- root/root 10055 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
-rw-r--r-- root/root 8018 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/reaction.py
-rw-r--r-- root/root 5020 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/room.py
-rw-r--r-- root/root 37101 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/sampling.py
-rw-r--r-- root/root 12812 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/summary.py
-rw-r--r-- root/root 11086 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/flux_analysis/variability.py
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/io/
-rw-r--r-- root/root 546 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/io/__init__.py
-rw-r--r-- root/root 7287 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/io/dict.py
-rw-r--r-- root/root 7131 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/io/json.py
-rw-r--r-- root/root 11174 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/io/mat.py
-rw-r--r-- root/root 32887 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/io/sbml.py
-rw-r--r-- root/root 30025 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/io/sbml3.py
-rw-r--r-- root/root 3297 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/io/yaml.py
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/manipulation/
-rw-r--r-- root/root 518 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/__init__.py
-rw-r--r-- root/root 872 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/annotate.py
-rw-r--r-- root/root 8365 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/delete.py
-rw-r--r-- root/root 6964 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/modify.py
-rw-r--r-- root/root 2116 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/manipulation/validate.py
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/medium/
-rw-r--r-- root/root 265 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/medium/__init__.py
-rw-r--r-- root/root 5119 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/medium/boundary_types.py
-rw-r--r-- root/root 8629 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/medium/minimal_medium.py
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/test/
-rw-r--r-- root/root 1721 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/__init__.py
-rw-r--r-- root/root 3338 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/conftest.py
lrwxrwxrwx root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/test/data -> ../../../../../share/python-cobra/data
-rw-r--r-- root/root 9938 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_io.py
-rw-r--r-- root/root 3092 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_io_order.py
-rw-r--r-- root/root 10507 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_manipulation.py
-rw-r--r-- root/root 5209 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_medium.py
-rw-r--r-- root/root 39893 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_model.py
-rw-r--r-- root/root 36821 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_solver_model.py
-rw-r--r-- root/root 5164 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/test/test_solver_utils.py
-rw-r--r-- root/root 11058 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/test/test_util.py
drwxr-xr-x root/root 0 2018-11-01 13:00 ./usr/lib/python3/dist-packages/cobra/util/
-rw-r--r-- root/root 191 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/util/__init__.py
-rw-r--r-- root/root 7168 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/util/array.py
-rw-r--r-- root/root 1759 2018-08-26 10:27 ./usr/lib/python3/dist-packages/cobra/util/context.py
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 37956
Build-Time: 353
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 684
Job: python-cobra_0.13.4-2
Machine Architecture: armhf
Package: python-cobra
Package-Time: 1053
Source-Version: 0.13.4-2
Space: 37956
Status: successful
Version: 0.13.4-2
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Finished at 2018-12-22T10:09:23Z
Build needed 00:17:33, 37956k disk space