Raspbian Package Auto-Building

Build log for python-cobra (0.13.4-1) on armhf

python-cobra → 0.13.4-1 → armhf → 2018-10-23 17:01:29 

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| python-cobra 0.13.4-1 (armhf)                Tue, 23 Oct 2018 16:46:13 +0000 |
+==============================================================================+

Package: python-cobra
Version: 0.13.4-1
Source Version: 0.13.4-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-842f256f-9d82-44cd-8d80-529bfe8d918e' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.0 MB in 15s (1640 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-cobra' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-cobra.git
Please use:
git clone https://salsa.debian.org/med-team/python-cobra.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1751 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main python-cobra 0.13.4-1 (dsc) [2448 B]
Get:2 http://172.17.0.1/private buster-staging/main python-cobra 0.13.4-1 (tar) [1742 kB]
Get:3 http://172.17.0.1/private buster-staging/main python-cobra 0.13.4-1 (diff) [5932 B]
Fetched 1751 kB in 1s (2257 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-cobra-9n5uba/python-cobra-0.13.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-cobra-9n5uba' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Q47pGP/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Q47pGP/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Q47pGP/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (11.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
  libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15767 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0)
Filtered Build-Depends: debhelper (>= 11~), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk, python3-tabulate, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0)
dpkg-deb: building package 'sbuild-build-depends-python-cobra-dummy' in '/<<BUILDDIR>>/resolver-Q47pGP/apt_archive/sbuild-build-depends-python-cobra-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-cobra-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Sources [637 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ Packages [721 B]
Fetched 2691 B in 0s (14.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-cobra build dependencies (apt-based resolver)
------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus dbus-user-session e2fsprogs-l10n krb5-locales libnss-systemd
  libpam-systemd libsasl2-modules systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cpp-8 cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file g++-8
  gcc-8 gcc-8-base gettext gettext-base groff-base intltool-debian libamd2
  libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3 libbsd0 libbtf1
  libcamd2 libcc1-0 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3
  libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
  libgcc-8-dev libgcc1 libgfortran5 libglib2.0-0 libglpk-dev libglpk40
  libgmp-dev libgmpxx4ldbl libgomp1 libgraphblas2 libgraphite2-3 libharfbuzz0b
  libicu-le-hb0 libicu60 libklu1 liblapack-dev liblapack3 libldl2 libltdl7
  libmagic-mgc libmagic1 libmetis5 libmongoose2 libmpdec2 libpipeline1
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.6
  libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libpython3.7
  libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib librbio2
  libsigsegv2 libspqr2 libstdc++-8-dev libstdc++6 libsuitesparse-dev
  libsuitesparseconfig5 libtool libubsan1 libumfpack5 libxml2 m4 man-db
  mime-support po-debconf python-pip-whl python3 python3-all python3-all-dev
  python3-atomicwrites python3-attr python3-certifi python3-chardet
  python3-cpuinfo python3-dateutil python3-depinfo python3-dev
  python3-distutils python3-future python3-idna python3-jsonschema
  python3-lib2to3 python3-minimal python3-more-itertools python3-mpmath
  python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pip
  python3-pipdeptree python3-pkg-resources python3-pluggy python3-py
  python3-pytest python3-pytest-benchmark python3-requests python3-ruamel.yaml
  python3-setuptools python3-six python3-swiglpk python3-sympy
  python3-tabulate python3-tz python3-urllib3 python3.6 python3.6-dev
  python3.6-minimal python3.7 python3.7-dev python3.7-minimal zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation gcc-8-locales cython-doc dh-make gcc-8-doc libstdc++6-8-dbg
  libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
  liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
  gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc
  libiodbc2-dev default-libmysqlclient-dev gmp-doc libgmp10-doc libmpfr-dev
  libstdc++-8-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
  apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python-attr-doc python-future-doc python-jsonschema-doc
  python3-gmpy2 python3-matplotlib python-mpmath-doc gfortran python-numpy-doc
  python3-nose python3-numpy-dbg python-pandas-doc subversion
  python3-cryptography python3-openssl python3-socks python-setuptools-doc
  texlive-fonts-extra dvipng python-sympy-doc python3.6-venv python3.6-doc
  binfmt-support python3.7-venv python3.7-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl python3-scipy
  python3-matplotlib python3-numexpr python3-tables python3-bs4
  python3-html5lib python3-lxml python3-wheel python3-elasticsearch
  python3-pil ipython3
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libamd2 libarchive-zip-perl
  libblas-dev libblas3 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3
  libcolamd2 libcroco3 libcxsparse3 libelf1 libexpat1-dev
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libglpk-dev libglpk40 libgmp-dev libgmpxx4ldbl libgraphblas2 libgraphite2-3
  libharfbuzz0b libicu-le-hb0 libicu60 libklu1 liblapack-dev liblapack3
  libldl2 libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libmpdec2
  libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
  libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
  librbio2 libsigsegv2 libspqr2 libsuitesparse-dev libsuitesparseconfig5
  libtool libumfpack5 libxml2 m4 man-db mime-support po-debconf python-pip-whl
  python3 python3-all python3-all-dev python3-atomicwrites python3-attr
  python3-certifi python3-chardet python3-cpuinfo python3-dateutil
  python3-depinfo python3-dev python3-distutils python3-future python3-idna
  python3-jsonschema python3-lib2to3 python3-minimal python3-more-itertools
  python3-mpmath python3-numpy python3-optlang python3-pandas
  python3-pandas-lib python3-pip python3-pipdeptree python3-pkg-resources
  python3-pluggy python3-py python3-pytest python3-pytest-benchmark
  python3-requests python3-ruamel.yaml python3-setuptools python3-six
  python3-swiglpk python3-sympy python3-tabulate python3-tz python3-urllib3
  python3.6 python3.6-dev python3.6-minimal python3.7 python3.7-dev
  python3.7-minimal sbuild-build-depends-python-cobra-dummy zlib1g-dev
The following packages will be upgraded:
  cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
  libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 125 newly installed, 0 to remove and 16 not upgraded.
Need to get 166 MB/166 MB of archives.
After this operation, 388 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Q47pGP/apt_archive ./ sbuild-build-depends-python-cobra-dummy 0.invalid.0 [1000 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-8+rpi1 [30.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-8+rpi1 [187 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-8+rpi1 [36.5 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-8+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-8+rpi1 [8104 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-8+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-8+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-8+rpi1 [5940 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-8+rpi1 [1563 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-8+rpi1 [599 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-8+rpi1 [5844 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-8+rpi1 [5472 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-8+rpi1 [326 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2+b1 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.6-1 [36.4 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.6-1 [19.8 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.6-1 [47.5 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.0-1 [580 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.0-1 [1448 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-8 [117 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1.1 [771 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-8 [434 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf cython3 armhf 0.28.4-1 [1998 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.043-2 [20.2 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.043-2 [12.2 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-8 [1220 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.4.1 [989 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180927 [95.8 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libsuitesparseconfig5 armhf 1:5.3.0+dfsg-1 [20.3 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libamd2 armhf 1:5.3.0+dfsg-1 [26.9 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-8+rpi1 [205 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libbtf1 armhf 1:5.3.0+dfsg-1 [20.8 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libcamd2 armhf 1:5.3.0+dfsg-1 [27.5 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libccolamd2 armhf 1:5.3.0+dfsg-1 [28.1 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libcolamd2 armhf 1:5.3.0+dfsg-1 [25.0 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libcholmod3 armhf 1:5.3.0+dfsg-1 [215 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libcxsparse3 armhf 1:5.3.0+dfsg-1 [48.5 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-6 [387 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libglpk40 armhf 4.65-2 [339 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libgmpxx4ldbl armhf 2:6.1.2+dfsg-3 [21.8 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libgmp-dev armhf 2:6.1.2+dfsg-3 [562 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgraphblas2 armhf 1:5.3.0+dfsg-1 [392 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libklu1 armhf 1:5.3.0+dfsg-1 [48.4 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libldl2 armhf 1:5.3.0+dfsg-1 [20.6 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libmongoose2 armhf 1:5.3.0+dfsg-1 [40.6 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libumfpack5 armhf 1:5.3.0+dfsg-1 [126 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf librbio2 armhf 1:5.3.0+dfsg-1 [29.4 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libspqr2 armhf 1:5.3.0+dfsg-1 [65.0 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libsuitesparse-dev armhf 1:5.3.0+dfsg-1 [942 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libglpk-dev armhf 4.65-2 [379 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.6-1 [1185 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.6-1 [43.7 MB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.6.6-1 [19.9 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.0-1 [1661 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpython3.7 armhf 3.7.0-1 [1250 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpython3.7-dev armhf 3.7.0-1 [47.0 MB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.6.6-1 [1072 B]
Get:98 http://172.17.0.1/private buster-staging/main armhf python-pip-whl all 9.0.1-2.3 [1678 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.0-1 [307 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.6.6-1 [1060 B]
Get:101 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.6-1 [508 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.6.6-1 [1264 B]
Get:103 http://172.17.0.1/private buster-staging/main armhf python3.7-dev armhf 3.7.0-1 [532 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.6.6-1 [1068 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf python3-atomicwrites all 1.1.5-2 [6892 B]
Get:106 http://172.17.0.1/private buster-staging/main armhf python3-attr all 18.2.0-1 [37.3 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-certifi all 2018.8.24-1 [140 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 40.4.3-1 [150 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-1 [80.2 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf python3-cpuinfo all 4.0.0-1 [18.6 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.11.0-2 [15.2 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf python3-dateutil all 2.6.1-1 [52.8 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf python3-pip all 9.0.1-2.3 [142 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf python3-pipdeptree armhf 0.13.0-2 [15.2 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf python3-depinfo armhf 1.4.0-1 [5296 B]
Get:116 http://172.17.0.1/private buster-staging/main armhf python3-future all 0.15.2-5 [345 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf python3-idna all 2.6-1 [34.3 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf python3-jsonschema all 2.6.0-4 [33.5 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf python3-more-itertools all 4.2.0-1 [42.2 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf python3-mpmath all 1.0.0-1 [416 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.14.5-1+b1 [1949 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf python3-swiglpk armhf 1.4.4-2 [52.5 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf python3-sympy all 1.3-1 [3500 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf python3-optlang all 1.4.1-1 [67.4 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2018.5-1 [26.9 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf python3-pandas-lib armhf 0.23.3-1 [2860 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf python3-pandas all 0.23.3-1 [1743 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf python3-pluggy all 0.6.0-1 [12.2 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf python3-py all 1.6.0-1 [86.2 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf python3-pytest all 3.6.4-1 [221 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf python3-pytest-benchmark all 3.1.1-1 [40.7 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf python3-urllib3 all 1.22-1 [97.9 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf python3-requests all 2.18.4-2 [77.1 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf python3-ruamel.yaml armhf 0.15.34-1 [175 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 40.4.3-1 [301 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf python3-tabulate all 0.8.2-1 [32.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up mime-support (3.61) ...
Installing new version of config file /etc/mime.types ...
Setting up libsigsegv2:armhf (2.12-2) ...
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No schema files found: removed existing output file.
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Setting up libgraphite2-3:armhf (1.3.12-1) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsuitesparseconfig5:armhf (1:5.3.0+dfsg-1) ...
Setting up libmetis5:armhf (5.1.0.dfsg-5) ...
Setting up libltdl7:armhf (2.4.6-6) ...
Setting up libcolamd2:armhf (1:5.3.0+dfsg-1) ...
Setting up libexpat1-dev:armhf (2.2.6-1) ...
Setting up libccolamd2:armhf (1:5.3.0+dfsg-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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Setting up libgfortran5:armhf (8.2.0-8+rpi1) ...
Setting up autopoint (0.19.8.1-8) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
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Setting up libubsan1:armhf (8.2.0-8+rpi1) ...
Setting up libbtf1:armhf (1:5.3.0+dfsg-1) ...
Setting up libldl2:armhf (1:5.3.0+dfsg-1) ...
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Setting up libpython3.6-stdlib:armhf (3.6.6-1) ...
Setting up libcxsparse3:armhf (1:5.3.0+dfsg-1) ...
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Setting up python3.6 (3.6.6-1) ...
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Setting up libcamd2:armhf (1:5.3.0+dfsg-1) ...
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Setting up autoconf (2.69-11) ...
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Setting up libblas3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpython3.7:armhf (3.7.0-1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up man-db (2.8.4-2+b1) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up python3 (3.6.6-1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
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Setting up liblapack3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libklu1:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-certifi (2018.8.24-1) ...
Setting up python3-more-itertools (4.2.0-1) ...
Setting up python3-pkg-resources (40.4.3-1) ...
Setting up python3.7-dev (3.7.0-1) ...
Setting up python3-mpmath (1.0.0-1) ...
Setting up python3-pluggy (0.6.0-1) ...
Setting up libpython3.6-dev:armhf (3.6.6-1) ...
Setting up libcholmod3:armhf (1:5.3.0+dfsg-1) ...
Setting up gcc-8 (8.2.0-8+rpi1) ...
Setting up python3-jsonschema (2.6.0-4) ...
update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode
Setting up g++-8 (8.2.0-8+rpi1) ...
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Setting up python3-attr (18.2.0-1) ...
Setting up cython3 (0.28.4-1) ...
Setting up python3-urllib3 (1.22-1) ...
Setting up python3-sympy (1.3-1) ...
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Setting up python3-lib2to3 (3.6.6-1) ...
Setting up python3-optlang (1.4.1-1) ...
Setting up python3-tz (2018.5-1) ...
Setting up python3-distutils (3.6.6-1) ...
Setting up python3-cpuinfo (4.0.0-1) ...
Setting up libspqr2:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-dateutil (2.6.1-1) ...
Setting up python3-atomicwrites (1.1.5-2) ...
Setting up libpython3-dev:armhf (3.6.6-1) ...
Setting up liblapack-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up python3-py (1.6.0-1) ...
Setting up python3-numpy (1:1.14.5-1+b1) ...
Setting up python3-pytest (3.6.4-1) ...
Setting up libumfpack5:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-pandas-lib (0.23.3-1) ...
Setting up python3-future (0.15.2-5) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up libpython3-all-dev:armhf (3.6.6-1) ...
Setting up python3-pip (9.0.1-2.3) ...
Setting up python3-requests (2.18.4-2) ...
Setting up libsuitesparse-dev:armhf (1:5.3.0+dfsg-1) ...
Setting up python3-pandas (0.23.3-1) ...
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Setting up dh-python (3.20180927) ...
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Setting up libglpk-dev:armhf (4.65-2) ...
Setting up python3-pipdeptree (0.13.0-2) ...
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Setting up python3-all (3.6.6-1) ...
Setting up python3-depinfo (1.4.0-1) ...
Setting up python3-all-dev (3.6.6-1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gettext (0.19.8.1-8) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.4.1) ...
Setting up sbuild-build-depends-python-cobra-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.043-2) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-6+rpi1 dpkg-dev_1.19.0.5 g++-8_8.2.0-8+rpi1 gcc-8_8.2.0-8+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-8+rpi1 libstdc++6_8.2.0-8+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-1.1 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-6+rpi1 binutils-arm-linux-gnueabihf_2.31.1-6+rpi1 binutils-common_2.31.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.2.0-8+rpi1 cython3_0.28.4-1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.4.1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_0.043-2 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20180808-2 g++_4:8.1.0-1+rpi1 g++-8_8.2.0-8+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-8+rpi1 gcc-8-base_8.2.0-8+rpi1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gnupg_2.2.10-3+rpi1 gnupg-agent_2.2.10-3+rpi1 gnupg-l10n_2.2.10-3+rpi1 gnupg-utils_2.2.10-3+rpi1 gpg_2.2.10-3+rpi1 gpg-agent_2.2.10-3+rpi1 gpg-wks-client_2.2.10-3+rpi1 gpg-wks-server_2.2.10-3+rpi1 gpgconf_2.2.10-3+rpi1 gpgsm_2.2.10-3+rpi1 gpgv_2.2.10-3+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.54 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libamd2_1:5.3.0+dfsg-1 libapparmor1_2.13-8 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-8+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-6+rpi1 libblas-dev_3.8.0-1+b1 libblas3_3.8.0-1+b1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbtf1_1:5.3.0+dfsg-1 libbz2-1.0_1.0.6-9 libc-bin_2.27-6+rpi1 libc-dev-bin_2.27-6+rpi1 libc6_2.27-6+rpi1 libc6-dev_2.27-6+rpi1 libcamd2_1:5.3.0+dfsg-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-8+rpi1 libccolamd2_1:5.3.0+dfsg-1 libcholmod3_1:5.3.0+dfsg-1 libcolamd2_1:5.3.0+dfsg-1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libcxsparse3_1:5.3.0+dfsg-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.94-1+rpi1 libdrm2_2.4.94-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.043-2 libfreetype6_2.8.1-2 libgcc-8-dev_8.2.0-8+rpi1 libgcc1_1:8.2.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.18-2 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgdbm6_1.18-2 libgfortran5_8.2.0-8+rpi1 libglib2.0-0_2.58.1-2 libglpk-dev_4.65-2 libglpk40_4.65-2 libgmp-dev_2:6.1.2+dfsg-3 libgmp10_2:6.1.2+dfsg-3 libgmpxx4ldbl_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1 libgomp1_8.2.0-8+rpi1 libgpg-error0_1.32-1 libgraphblas2_1:5.3.0+dfsg-1 libgraphite2-3_1.3.12-1 libgssapi-krb5-2_1.16.1-1 libharfbuzz0b_1.9.0-1+rpi1 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.6.2-1.1 libisl19_0.20-2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libklu1_1:5.3.0+dfsg-1 libkmod2_25-1 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1+b1 liblapack3_3.8.0-1+b1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libldl2_1:5.3.0+dfsg-1 libltdl7_2.4.6-6 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmetis5_5.1.0.dfsg-5 libmongoose2_1:5.3.0+dfsg-1 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180714-1 libncurses6_6.1+20180714-1 libncursesw5_6.1+20180714-1 libncursesw6_6.1+20180714-1 libnettle6_3.4-1 libnpth0_1.6-1 libnss-systemd_239-10+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-10+rpi1 libpam0g_1.1.8-3.8 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpython3-all-dev_3.6.6-1 libpython3-dev_3.6.6-1 libpython3-stdlib_3.6.6-1 libpython3.6_3.6.6-1 libpython3.6-dev_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libpython3.7_3.7.0-1 libpython3.7-dev_3.7.0-1 libpython3.7-minimal_3.7.0-1 libpython3.7-stdlib_3.7.0-1 librbio2_1:5.3.0+dfsg-1 libreadline7_7.0-5 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32.1-0.1 libspqr2_1:5.3.0+dfsg-1 libsqlite3-0_3.25.2-1 libss2_1.44.4-2 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.2.0-8+rpi1 libstdc++6_8.2.0-8+rpi1 libsuitesparse-dev_1:5.3.0+dfsg-1 libsuitesparseconfig5_1:5.3.0+dfsg-1 libsystemd0_239-10+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtool_2.4.6-6 libubsan1_8.2.0-8+rpi1 libudev1_239-10+rpi1 libumfpack5_1:5.3.0+dfsg-1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-2+b1 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 nano_3.1-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python-pip-whl_9.0.1-2.3 python3_3.6.6-1 python3-all_3.6.6-1 python3-all-dev_3.6.6-1 python3-atomicwrites_1.1.5-2 python3-attr_18.2.0-1 python3-certifi_2018.8.24-1 python3-chardet_3.0.4-1 python3-cpuinfo_4.0.0-1 python3-dateutil_2.6.1-1 python3-depinfo_1.4.0-1 python3-dev_3.6.6-1 python3-distutils_3.6.6-1 python3-future_0.15.2-5 python3-idna_2.6-1 python3-jsonschema_2.6.0-4 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3-more-itertools_4.2.0-1 python3-mpmath_1.0.0-1 python3-numpy_1:1.14.5-1+b1 python3-optlang_1.4.1-1 python3-pandas_0.23.3-1 python3-pandas-lib_0.23.3-1 python3-pip_9.0.1-2.3 python3-pipdeptree_0.13.0-2 python3-pkg-resources_40.4.3-1 python3-pluggy_0.6.0-1 python3-py_1.6.0-1 python3-pytest_3.6.4-1 python3-pytest-benchmark_3.1.1-1 python3-requests_2.18.4-2 python3-ruamel.yaml_0.15.34-1 python3-setuptools_40.4.3-1 python3-six_1.11.0-2 python3-swiglpk_1.4.4-2 python3-sympy_1.3-1 python3-tabulate_0.8.2-1 python3-tz_2018.5-1 python3-urllib3_1.22-1 python3.6_3.6.6-1 python3.6-dev_3.6.6-1 python3.6-minimal_3.6.6-1 python3.7_3.7.0-1 python3.7-dev_3.7.0-1 python3.7-minimal_3.7.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-cobra-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_239-10+rpi1 util-linux_2.32.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Oct 17 19:37:09 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-cobra_0.13.4-1.dsc
dpkg-source: info: extracting python-cobra in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cobra_0.13.4.orig.tar.gz
dpkg-source: info: unpacking python-cobra_0.13.4-1.debian.tar.xz
dpkg-source: info: applying mathjax.patch
dpkg-source: info: applying drop_failing_test2.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-842f256f-9d82-44cd-8d80-529bfe8d918e
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-cobra
dpkg-buildpackage: info: source version 0.13.4-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build python-cobra-0.13.4
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.7 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
I: pybuild base:217: python3.6 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.6' does not exist -- can't clean it
rm -f cobra/solvers/cglpk.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config 
running config
I: pybuild base:217: python3.6 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.7 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_solver_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_solver_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
copying cobra/test/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
copying cobra/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
copying cobra/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
copying cobra/exceptions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
copying cobra/medium/minimal_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
copying cobra/medium/boundary_types.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
copying cobra/medium/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/medium
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/variability.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/geometric.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/parsimonious.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/deletion.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/summary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/room.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/moma.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/loopless.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/gapfilling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/sampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
copying cobra/flux_analysis/phenotype_phase_plane.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/object.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/dictlist.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/gene.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/reaction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/metabolite.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/solution.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/formula.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
copying cobra/core/model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/core
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_io_order.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_solver_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_medium.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_solver_model.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_manipulation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
copying cobra/test/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/array.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/context.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
copying cobra/util/solver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/util
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/annotate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/modify.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
copying cobra/manipulation/delete.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/manipulation
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/json.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/sbml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/sbml3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/dict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/yaml.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
copying cobra/io/mat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_cobra.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.yml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/invalid1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/invalid2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook.xml.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/raven.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/raven.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook_solution.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.media -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/iJO1366.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.genes -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/update_pickles.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.pickle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc1.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/salmonella.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/textbook_pfba_fva.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini.mat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/invalid0.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
copying cobra/test/data/mini_fbc2.xml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_cobra/build/cobra/test/data
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.7.0, pytest-3.6.4, py-1.6.0, pluggy-0.6.0
benchmark: 3.1.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
plugins: benchmark-3.1.1
No solvers were available and/or loadable.
collected 0 items / 1 errors

==================================== ERRORS ====================================
______________________________ ERROR collecting  _______________________________
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:372: in _getconftestmodules
    return self._path2confmods[path]
E   KeyError: local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test')

During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:403: in _importconftest
    return self._conftestpath2mod[conftestpath]
E   KeyError: local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py')

During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/pandas/__init__.py:26: in <module>
    from pandas._libs import (hashtable as _hashtable,
/usr/lib/python3/dist-packages/pandas/_libs/__init__.py:4: in <module>
    from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime
E   ModuleNotFoundError: No module named 'pandas._libs.tslib'

During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:409: in _importconftest
    mod = conftestpath.pyimport()
/usr/lib/python3/dist-packages/py/_path/local.py:668: in pyimport
    __import__(modname)
cobra/__init__.py:11: in <module>
    from cobra import flux_analysis, io
cobra/flux_analysis/__init__.py:3: in <module>
    from cobra.flux_analysis.gapfilling import gapfill
cobra/flux_analysis/gapfilling.py:8: in <module>
    from cobra.core import Model
cobra/core/__init__.py:6: in <module>
    from cobra.core.gene import Gene
cobra/core/gene.py:13: in <module>
    from cobra.util import resettable
cobra/util/__init__.py:8: in <module>
    from cobra.util.array import *
cobra/util/array.py:7: in <module>
    import pandas as pd
/usr/lib/python3/dist-packages/pandas/__init__.py:35: in <module>
    "the C extensions first.".format(module))
E   ImportError: C extension: No module named 'pandas._libs.tslib' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.

During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/py/_path/common.py:377: in visit
    for x in Visitor(fil, rec, ignore, bf, sort).gen(self):
/usr/lib/python3/dist-packages/py/_path/common.py:429: in gen
    for p in self.gen(subdir):
/usr/lib/python3/dist-packages/py/_path/common.py:418: in gen
    dirs = self.optsort([p for p in entries
/usr/lib/python3/dist-packages/py/_path/common.py:419: in <listcomp>
    if p.check(dir=1) and (rec is None or rec(p))])
/usr/lib/python3/dist-packages/_pytest/main.py:511: in _recurse
    ihook = self.gethookproxy(path)
/usr/lib/python3/dist-packages/_pytest/main.py:413: in gethookproxy
    my_conftestmodules = pm._getconftestmodules(fspath)
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:386: in _getconftestmodules
    mod = self._importconftest(conftestpath)
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:417: in _importconftest
    raise ConftestImportFailure(conftestpath, sys.exc_info())
E   _pytest.config.ConftestImportFailure: ImportError("C extension: No module named 'pandas._libs.tslib' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.")
E     File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/__init__.py", line 11, in <module>
E       from cobra import flux_analysis, io
E     File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__init__.py", line 3, in <module>
E       from cobra.flux_analysis.gapfilling import gapfill
E     File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/gapfilling.py", line 8, in <module>
E       from cobra.core import Model
E     File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/__init__.py", line 6, in <module>
E       from cobra.core.gene import Gene
E     File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core/gene.py", line 13, in <module>
E       from cobra.util import resettable
E     File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/__init__.py", line 8, in <module>
E       from cobra.util.array import *
E     File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util/array.py", line 7, in <module>
E       import pandas as pd
E     File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 35, in <module>
E       "the C extensions first.".format(module))
!!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection !!!!!!!!!!!!!!!!!!!!
=========================== 1 error in 4.21 seconds ============================
E: pybuild pybuild:338: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest 
dh_auto_test: pybuild --test --test-pytest -i python{version} -p "3.7 3.6" returned exit code 13
make: *** [debian/rules:10: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-10-23T17:01:28Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 35348
Build-Time: 15
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 878
Job: python-cobra_0.13.4-1
Machine Architecture: armhf
Package: python-cobra
Package-Time: 915
Source-Version: 0.13.4-1
Space: 35348
Status: attempted
Version: 0.13.4-1
--------------------------------------------------------------------------------
Finished at 2018-10-23T17:01:28Z
Build needed 00:15:15, 35348k disk space