python-biom-format →
2.1.8+dfsg-1 →
armhf → 2020-01-25 06:15:57
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| python-biom-format 2.1.8+dfsg-1 (armhf) Sat, 25 Jan 2020 05:56:03 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.8+dfsg-1
Source Version: 2.1.8+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-23756249-c946-47ee-9571-6c79ce0bd508' with '<<CHROOT>>'
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Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
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| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8539 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.8+dfsg-1 (dsc) [2542 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.8+dfsg-1 (tar) [8528 kB]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-FF3gte/python-biom-format-2.1.8+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-FF3gte' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
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dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
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gpg: /<<BUILDDIR>>/resolver-eBT39a/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-eBT39a/apt_archive ./ InRelease
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
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debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12207 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
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| Check architectures |
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Arch check ok (armhf included in any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
Filtered Build-Depends: debhelper-compat (= 12), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-eBT39a/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
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Reading package lists...
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Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file gettext gettext-base
groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas3
libbsd0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2
libhdf5-openmpi-103 libhwloc-plugins libhwloc15 libibverbs1 libicu63
libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblocale-gettext-perl
libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200
libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
libsub-override-perl libsz2 libtinfo5 libtool libuchardet0 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db
mime-support mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common
openssh-client openssl po-debconf python-babel-localedata python3
python3-alabaster python3-all python3-all-dev python3-attr python3-babel
python3-certifi python3-chardet python3-click python3-colorama
python3-dateutil python3-decorator python3-dev python3-distutils
python3-docutils python3-future python3-h5py python3-idna python3-imagesize
python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal
python3-mpi4py python3-nose python3-numpy python3-packaging python3-pandas
python3-pandas-lib python3-pkg-resources python3-pygments python3-pyparsing
python3-requests python3-roman python3-scipy python3-setuptools python3-six
python3-sphinx python3-tz python3-urllib3 python3.7 python3.7-dev
python3.7-minimal python3.8 python3.8-dev python3.8-minimal sensible-utils
sgml-base sphinx-common xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff krb5-doc krb5-user pciutils libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran
| fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python-future-doc
python-h5py-doc python-jinja2-doc python-nose-doc gfortran python-numpy-doc
python3-pytest python3-numpy-dbg python-pandas-doc python3-statsmodels
python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
python3-cryptography python3-openssl python3-socks python-scipy-doc
python-setuptools-doc dvipng imagemagick-6.q16 latexmk libjs-mathjax
python3-sphinx-rtd-theme python3-stemmer sphinx-doc
texlive-fonts-recommended texlive-latex-extra texlive-plain-generic
python3.7-venv python3.7-doc binfmt-support python3.8-venv python3.8-doc
sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs ibverbs-providers javascript-common krb5-locales libltdl-dev
libopenmpi-dev xauth libmail-sendmail-perl libpaper-utils python3-pil
python3-matplotlib python3-numexpr python3-tables python3-xlrd
python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file gettext gettext-base
groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas3
libbsd0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2
libhdf5-openmpi-103 libhwloc-plugins libhwloc15 libibverbs1 libicu63
libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblocale-gettext-perl
libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200
libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
libsub-override-perl libsz2 libtinfo5 libtool libuchardet0 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db
mime-support mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common
openssh-client openssl po-debconf python-babel-localedata python3
python3-alabaster python3-all python3-all-dev python3-attr python3-babel
python3-certifi python3-chardet python3-click python3-colorama
python3-dateutil python3-decorator python3-dev python3-distutils
python3-docutils python3-future python3-h5py python3-idna python3-imagesize
python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal
python3-mpi4py python3-nose python3-numpy python3-packaging python3-pandas
python3-pandas-lib python3-pkg-resources python3-pygments python3-pyparsing
python3-requests python3-roman python3-scipy python3-setuptools python3-six
python3-sphinx python3-tz python3-urllib3 python3.7 python3.7-dev
python3.7-minimal python3.8 python3.8-dev python3.8-minimal
sbuild-build-depends-python-biom-format-dummy sensible-utils sgml-base
sphinx-common xml-core zlib1g-dev
0 upgraded, 151 newly installed, 0 to remove and 2 not upgraded.
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Get:73 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [54.7 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-22+rpi1 [230 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-11 [387 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.1.0+dfsg-3+rpi1 [112 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 27.0-2 [47.2 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libxnvctrl0 armhf 430.64-1 [24.6 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.7 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.1.0+dfsg-3+rpi1 [18.6 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.4-1+b1 [370 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.2-5+rpi1 [1679 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-103 armhf 1.10.4+repack-10 [1306 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 1.8.5-5 [96.7 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1 [1253 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1 [40.2 MB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.1-2 [1597 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.1-2 [1361 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.1-2 [46.0 MB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-3 [1072 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.2-5+rpi1 [168 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.2-5+rpi1 [185 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.1-2 [406 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-3 [1060 B]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1 [518 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.1-2 [519 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-3 [1076 B]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 18.2.0-1 [37.3 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-1 [27.2 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-babel all 2.6.0+dfsg.1-1 [96.7 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2019.11.28-1 [149 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-4 [80.8 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-colorama all 0.4.3-1 [27.8 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-click all 7.0-3 [73.8 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.13.0-1 [16.2 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.3.0-1.1 [14.5 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-roman all 2.0.0-3 [8768 B]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-docutils all 0.16+dfsg-1 [383 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-future all 0.16.0-1 [346 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-mpi4py armhf 3.0.3-1 [413 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py armhf 2.10.0-2 [720 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.6-2 [34.4 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-imagesize all 1.2.0-1 [5764 B]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-markupsafe armhf 1.1.0-1+b1 [15.1 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf python3-jinja2 all 2.10.1-1 [107 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-nose all 1.3.7-4 [132 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.2-1 [106 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 19.1-2 [23.9 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg-4 [3683 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg-4 [1983 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf python3-pygments all 2.3.1+dfsg-1 [594 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.6-5 [104 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.22.0-2 [67.0 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3+b1 [12.1 MB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf sphinx-common all 1.8.5-5 [491 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf python3-sphinx all 1.8.5-5 [482 kB]
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128 added, 0 removed; done.
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-pygments (2.3.1+dfsg-1) ...
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Setting up python3-certifi (2019.11.28-1) ...
Setting up libpython3.8-dev:armhf (3.8.1-2) ...
Setting up libpython3-all-dev:armhf (3.7.5-3) ...
Setting up sphinx-common (1.8.5-5) ...
Setting up python3-idna (2.6-2) ...
Setting up cython3 (0.29.14-0.1) ...
Setting up python3-urllib3 (1.25.6-5) ...
Setting up python3.8-dev (3.8.1-2) ...
Setting up python3-dateutil (2.7.3-3) ...
Setting up python3-lib2to3 (3.8.0-1) ...
Setting up python3-imagesize (1.2.0-1) ...
Setting up python3-pkg-resources (44.0.0-1) ...
Setting up python3-distutils (3.8.0-1) ...
Setting up dh-python (4.20191017) ...
Setting up python3-attr (18.2.0-1) ...
Setting up python3-setuptools (44.0.0-1) ...
Setting up python3-babel (2.6.0+dfsg.1-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-colorama (0.4.3-1) ...
Setting up python3-alabaster (0.7.8-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.7.5-3) ...
Setting up python3-click (7.0-3) ...
Setting up libhwloc-plugins:armhf (2.1.0+dfsg-3+rpi1) ...
Setting up python3-nose (1.3.7-4) ...
Setting up python3-packaging (19.1-2) ...
Setting up python3-chardet (3.0.4-4) ...
Setting up python3-dev (3.7.5-3) ...
Setting up python3-requests (2.22.0-2) ...
Setting up python3-numpy (1:1.17.4-5+b1) ...
Setting up python3-future (0.16.0-1) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-all-dev (3.7.5-3) ...
Setting up python3-scipy (1.3.3-3+b1) ...
Setting up libpmix2:armhf (3.1.4-1+b1) ...
Setting up libopenmpi3:armhf (4.0.2-5+rpi1) ...
Setting up python3-pandas-lib (0.25.3+dfsg-4) ...
Setting up libhdf5-openmpi-103:armhf (1.10.4+repack-10) ...
Setting up python3-pandas (0.25.3+dfsg-4) ...
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
/usr/lib/python3/dist-packages/pandas/tests/frame/test_alter_axes.py:241: SyntaxWarning: "is" with a literal. Did you mean "=="?
False if (keys[0] is "A" and keys[1] is "A") else drop # noqa: F632
Setting up openmpi-bin (4.0.2-5+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up mpi-default-bin (1.13) ...
Setting up python3-mpi4py (3.0.3-1) ...
Setting up python3-h5py (2.10.0-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.3) ...
Processing triggers for libc-bin (2.29-7+rpi1) ...
Processing triggers for sgml-base (1.29.1) ...
Setting up docutils-common (0.16+dfsg-1) ...
Processing triggers for sgml-base (1.29.1) ...
Setting up python3-docutils (0.16+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (1.8.5-5) ...
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 bash-completion_1:2.9-1.1 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 docutils-common_0.16+dfsg-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-3 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 help2man_1.47.12 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libaec0_1.0.4-1 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-22+rpi1 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhdf5-openmpi-103_1.10.4+repack-10 libhogweed5_3.5.1+really3.5.1-2 libhwloc-plugins_2.1.0+dfsg-3+rpi1 libhwloc15_2.1.0+dfsg-3+rpi1 libibverbs1_27.0-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libjs-jquery_3.3.1~dfsg-3 libjs-sphinxdoc_1.8.5-5 libjs-underscore_1.9.1~dfsg-1 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 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libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libsz2_1.0.4-1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-8 libxnvctrl0_430.64-1 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mime-support_3.64 mount_2.34-0.1 mpi-default-bin_1.13 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_4.0.2-5+rpi1 openmpi-common_4.0.2-5+rpi1 openssh-client_1:8.1p1-5 openssl_1.1.1d-2 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python-babel-localedata_2.6.0+dfsg.1-1 python3_3.7.5-3 python3-alabaster_0.7.8-1 python3-all_3.7.5-3 python3-all-dev_3.7.5-3 python3-attr_18.2.0-1 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2019.11.28-1 python3-chardet_3.0.4-4 python3-click_7.0-3 python3-colorama_0.4.3-1 python3-dateutil_2.7.3-3 python3-decorator_4.3.0-1.1 python3-dev_3.7.5-3 python3-distutils_3.8.0-1 python3-docutils_0.16+dfsg-1 python3-future_0.16.0-1 python3-h5py_2.10.0-2 python3-idna_2.6-2 python3-imagesize_1.2.0-1 python3-jinja2_2.10.1-1 python3-lib2to3_3.8.0-1 python3-markupsafe_1.1.0-1+b1 python3-minimal_3.7.5-3 python3-mpi4py_3.0.3-1 python3-nose_1.3.7-4 python3-numpy_1:1.17.4-5+b1 python3-packaging_19.1-2 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4 python3-pkg-resources_44.0.0-1 python3-pygments_2.3.1+dfsg-1 python3-pyparsing_2.4.2-1 python3-requests_2.22.0-2 python3-roman_2.0.0-3 python3-scipy_1.3.3-3+b1 python3-setuptools_44.0.0-1 python3-six_1.13.0-1 python3-sphinx_1.8.5-5 python3-tz_2019.3-1 python3-urllib3_1.25.6-5 python3.7_3.7.6-1 python3.7-dev_3.7.6-1 python3.7-minimal_3.7.6-1 python3.8_3.8.1-2 python3.8-dev_3.8.1-2 python3.8-minimal_3.8.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.29.1 sphinx-common_1.8.5-5 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 20 11:10:18 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.8+dfsg-1.dsc
dpkg-source: info: extracting python-biom-format in /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg
dpkg-source: info: unpacking python-biom-format_2.1.8+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.8+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-23756249-c946-47ee-9571-6c79ce0bd508
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.8+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean --test-nose -i python{version} -p "3.8 3.7"
I: pybuild base:217: python3.8 setup.py clean
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build' (and everything under it)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p "3.8 3.7"
I: pybuild base:217: python3.8 setup.py config
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
I: pybuild base:217: python3.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build --test-nose -i python{version} -p "3.8 3.7"
I: pybuild base:217: /usr/bin/python3.8 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/cli
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/assets
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_filter.c -o build/temp.linux-armhf-3.8/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/_filter.cpython-38-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_transform.c -o build/temp.linux-armhf-3.8/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/_transform.cpython-38-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_subsample.c -o build/temp.linux-armhf-3.8/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/_subsample.cpython-38-arm-linux-gnueabihf.so
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
creating /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_filter.c -o build/temp.linux-armhf-3.7/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_transform.c -o build/temp.linux-armhf-3.7/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_subsample.c -o build/temp.linux-armhf-3.7/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1830,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v1.8.5
making output directory...
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices...
writing additional pages... search
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v1.8.5
making output directory...
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE }
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-nose -i python{version} -p "3.8 3.7"
I: pybuild pybuild:272: cp -r /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/examples /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build
I: pybuild base:217: cd /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build; python3.8 -m nose -v
Failure: ImportError (C extension: No module named 'pandas._libs.tslibs.conversion' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.) ... ERROR
======================================================================
ERROR: Failure: ImportError (C extension: No module named 'pandas._libs.tslibs.conversion' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 30, in <module>
from pandas._libs import hashtable as _hashtable, lib as _lib, tslib as _tslib
File "/usr/lib/python3/dist-packages/pandas/_libs/__init__.py", line 3, in <module>
from .tslibs import (
File "/usr/lib/python3/dist-packages/pandas/_libs/tslibs/__init__.py", line 3, in <module>
from .conversion import localize_pydatetime, normalize_date
ModuleNotFoundError: No module named 'pandas._libs.tslibs.conversion'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest
raise self.exc_val.with_traceback(self.tb)
File "/usr/lib/python3/dist-packages/nose/loader.py", line 416, in loadTestsFromName
module = self.importer.importFromPath(
File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/usr/lib/python3.8/imp.py", line 244, in load_module
return load_package(name, filename)
File "/usr/lib/python3.8/imp.py", line 216, in load_package
return _load(spec)
File "<frozen importlib._bootstrap>", line 702, in _load
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 783, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/__init__.py", line 53, in <module>
from .table import Table
File "/<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py", line 189, in <module>
import pandas as pd
File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 34, in <module>
raise ImportError(
ImportError: C extension: No module named 'pandas._libs.tslibs.conversion' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.
----------------------------------------------------------------------
Ran 1 test in 1.001s
FAILED (errors=1)
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd /<<BUILDDIR>>/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build; python3.8 -m nose -v
dh_auto_test: pybuild --test --test-nose -i python{version} -p "3.8 3.7" returned exit code 13
make: *** [debian/rules:19: build-arch] Error 255
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-01-25T06:15:54Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 164212
Build-Time: 104
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1061
Job: python-biom-format_2.1.8+dfsg-1
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 1191
Source-Version: 2.1.8+dfsg-1
Space: 164212
Status: attempted
Version: 2.1.8+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-01-25T06:15:54Z
Build needed 00:19:51, 164212k disk space