python-biom-format →
2.1.7+dfsg-5 →
armhf → 2019-12-27 05:56:31
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| python-biom-format 2.1.7+dfsg-5 (armhf) Fri, 27 Dec 2019 05:39:27 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.7+dfsg-5
Source Version: 2.1.7+dfsg-5
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-c3a59a38-7409-46e9-917b-e6fda07277af' with '<<CHROOT>>'
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| Update chroot |
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Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
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| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8536 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.7+dfsg-5 (dsc) [2550 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.7+dfsg-5 (tar) [8524 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.7+dfsg-5 (diff) [9052 B]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-o6tkCW/python-biom-format-2.1.7+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-o6tkCW' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Q6V1R8/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Q6V1R8/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Q6V1R8/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Q6V1R8/apt_archive ./ InRelease
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Reading package lists...
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Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 852 B of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-Q6V1R8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13002 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
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Arch check ok (armhf included in any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, cython, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
Filtered Build-Depends: debhelper-compat (= 12), dh-python, cython, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-Q6V1R8/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Q6V1R8/apt_archive ./ InRelease
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Get:4 copy:/<<BUILDDIR>>/resolver-Q6V1R8/apt_archive ./ Sources [580 B]
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Reading package lists...
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Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
ca-certificates cpp-9 cython cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file g++-9 gcc-9 gcc-9-base
gettext gettext-base groff-base help2man intltool-debian libaec0
libarchive-zip-perl libasan5 libatomic1 libblas3 libbsd0 libcc1-0 libcroco3
libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgcc-9-dev libgcc1 libgfortran5
libglib2.0-0 libgomp1 libgssapi-krb5-2 libhdf5-openmpi-103 libhwloc-plugins
libhwloc15 libibverbs1 libicu63 libjs-jquery libjs-sphinxdoc
libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack3 liblbfgsb0 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1
libmpdec2 libnl-3-200 libnl-route-3-200 libopenmpi3 libpciaccess0
libpipeline1 libpmix2 libpython-stdlib libpython2-stdlib
libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libssl1.1 libstdc++-9-dev libstdc++6
libsub-override-perl libsz2 libtinfo5 libtool libubsan1 libuchardet0 libxml2
m4 man-db mime-support mpi-default-bin ocl-icd-libopencl1 openmpi-bin
openmpi-common openssh-client openssl po-debconf python
python-babel-localedata python-minimal python2 python2-minimal python2.7
python2.7-minimal python3 python3-alabaster python3-all python3-all-dev
python3-attr python3-babel python3-certifi python3-chardet python3-click
python3-colorama python3-dateutil python3-decorator python3-dev
python3-distutils python3-docutils python3-future python3-h5py python3-idna
python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe
python3-minimal python3-mpi4py python3-nose python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pkg-resources python3-pygments
python3-pyparsing python3-requests python3-roman python3-scipy
python3-setuptools python3-six python3-sphinx python3-tz python3-urllib3
python3.7 python3.7-dev python3.7-minimal sensible-utils sgml-base
sphinx-common xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-9-locales cython-doc dh-make gcc-9-doc gettext-doc
libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user pciutils
libstdc++-9-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain
libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk
python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python-attr-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine
texlive-lang-french texlive-latex-base texlive-latex-recommended
python-future-doc python-h5py-doc python-jinja2-doc python-nose-doc gfortran
python-numpy-doc python3-pytest python3-numpy-dbg python-pandas-doc
python3-statsmodels python-pygments-doc ttf-bitstream-vera
python-pyparsing-doc python3-cryptography python3-openssl python3-socks
python-scipy-doc python-setuptools-doc dvipng imagemagick-6.q16 latexmk
libjs-mathjax python3-sphinx-rtd-theme python3-stemmer sphinx-doc
texlive-fonts-recommended texlive-latex-extra texlive-plain-generic
python3.7-venv python3.7-doc sgml-base-doc
Recommended packages:
python-dev curl | wget | lynx libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs ibverbs-providers javascript-common
krb5-locales libltdl-dev libopenmpi-dev xauth libmail-sendmail-perl
libpaper-utils python3-pil python3-matplotlib python3-numexpr python3-tables
python3-xlrd python3-openpyxl python3-xlwt python3-bs4 python3-html5lib
python3-lxml
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
ca-certificates cython cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file gettext gettext-base
groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas3
libbsd0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2
libhdf5-openmpi-103 libhwloc-plugins libhwloc15 libibverbs1 libicu63
libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblocale-gettext-perl
libltdl7 libmagic-mgc libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200
libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpython-stdlib
libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libsigsegv2
libssl1.1 libsub-override-perl libsz2 libtinfo5 libtool libuchardet0 libxml2
m4 man-db mime-support mpi-default-bin ocl-icd-libopencl1 openmpi-bin
openmpi-common openssh-client openssl po-debconf python
python-babel-localedata python-minimal python2 python2-minimal python2.7
python2.7-minimal python3 python3-alabaster python3-all python3-all-dev
python3-attr python3-babel python3-certifi python3-chardet python3-click
python3-colorama python3-dateutil python3-decorator python3-dev
python3-distutils python3-docutils python3-future python3-h5py python3-idna
python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe
python3-minimal python3-mpi4py python3-nose python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pkg-resources python3-pygments
python3-pyparsing python3-requests python3-roman python3-scipy
python3-setuptools python3-six python3-sphinx python3-tz python3-urllib3
python3.7 python3.7-dev python3.7-minimal
sbuild-build-depends-python-biom-format-dummy sensible-utils sgml-base
sphinx-common xml-core zlib1g-dev
The following packages will be upgraded:
cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libatomic1 libcc1-0 libgcc-9-dev
libgcc1 libgomp1 libstdc++-9-dev libstdc++6 libubsan1
13 upgraded, 148 newly installed, 0 to remove and 16 not upgraded.
Need to get 137 MB of archives.
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Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4 [18.1 kB]
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Get:24 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.17-1 [1107 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.17-2 [41.4 kB]
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Get:32 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.17-2 [20.9 kB]
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Get:34 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.17-2 [41.7 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.17-2 [22.9 kB]
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Get:44 http://172.17.0.1/private bullseye-staging/main armhf sgml-base all 1.29.1 [15.0 kB]
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Get:46 http://172.17.0.1/private bullseye-staging/main armhf bash-completion all 1:2.8-6 [208 kB]
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Get:50 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
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Get:57 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.1p1-1 [713 kB]
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Get:59 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
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Get:62 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
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Get:66 http://172.17.0.1/private bullseye-staging/main armhf cython armhf 0.29.14-0.1 [1355 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
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Get:70 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.2 [174 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.3-2 [1137 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.2 [1018 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf docutils-common all 0.15.2+dfsg-1 [167 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.11 [180 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-7 armhf 2.1.11-stable-1 [165 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.11-stable-1 [124 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [54.7 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-21+rpi1 [231 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-11 [387 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.1.0+dfsg-2+rpi1 [112 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 26.0-2 [47.1 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.7 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.1.0+dfsg-2+rpi1 [17.0 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.4-1+b1 [370 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.2-4+rpi1+b1 [1680 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-openmpi-103 armhf 1.10.4+repack-10 [1306 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 1.8.5-4 [96.7 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.5-2 [1252 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.5-2 [40.2 MB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-1 [20.1 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.7.5-1 [1068 B]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.2-4+rpi1 [168 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.2-4+rpi1+b1 [183 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.7.5-1 [1064 B]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.5-2 [513 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-1 [1272 B]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.7.5-1 [1064 B]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 18.2.0-1 [37.3 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 41.2.0-1 [154 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-1 [27.2 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-babel all 2.6.0+dfsg.1-1 [96.7 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2018.8.24-1 [140 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-4 [80.8 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-colorama all 0.4.3-1 [27.8 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-click all 7.0-2 [73.7 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.13.0-1 [16.2 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.3.0-1.1 [14.5 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-roman all 2.0.0-3 [8768 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-docutils all 0.15.2+dfsg-1 [381 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-future all 0.16.0-1 [346 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.16.5-1 [1908 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf python3-mpi4py armhf 3.0.3-1 [413 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py armhf 2.10.0-2 [720 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.6-2 [34.4 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf python3-imagesize all 1.0.0-1 [4960 B]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf python3-markupsafe armhf 1.1.0-1 [14.4 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3-jinja2 all 2.10.1-1 [107 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf python3-nose all 1.3.7-4 [132 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.2-1 [106 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 19.1-2 [23.9 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg-4 [3683 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg-4 [1983 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf python3-pygments all 2.3.1+dfsg-1 [594 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.6-4 [104 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.22.0-2 [67.0 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3 [9809 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 41.2.0-1 [307 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf sphinx-common all 1.8.5-4 [492 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf python3-sphinx all 1.8.5-4 [482 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up cpp-9 (9.2.1-21+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up sgml-base (1.29.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libjs-jquery (3.3.1~dfsg-3) ...
Setting up openssl (1.1.1d-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up libcc1-0:armhf (9.2.1-21+rpi1) ...
Setting up liblocale-gettext-perl (1.07-4) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libjs-underscore (1.9.1~dfsg-1) ...
Setting up libevent-pthreads-2.1-7:armhf (2.1.11-stable-1) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-1) ...
Setting up libpython3.7-stdlib:armhf (3.7.5-2) ...
Setting up liblapack3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up python2.7 (2.7.17-1) ...
Setting up libpython3.7:armhf (3.7.5-2) ...
Setting up libtool (2.4.6-11) ...
Setting up libpython2-stdlib:armhf (2.7.17-2) ...
Setting up libpython3.7-dev:armhf (3.7.5-2) ...
Setting up libedit2:armhf (3.1-20191025-1) ...
Setting up m4 (1.4.18-4) ...
Setting up python2 (2.7.17-2) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up help2man (1.47.11) ...
Setting up libgcc-9-dev:armhf (9.2.1-21+rpi1) ...
Setting up ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
128 added, 0 removed; done.
Setting up libpython-stdlib:armhf (2.7.17-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libhwloc15:armhf (2.1.0+dfsg-2+rpi1) ...
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libjs-sphinxdoc (1.8.5-4) ...
Setting up autoconf (2.69-11) ...
Setting up dh-strip-nondeterminism (1.6.3-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-3) ...
Setting up xml-core (0.18+nmu1) ...
Setting up python (2.7.17-2) ...
Setting up libpython3-stdlib:armhf (3.7.5-1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-7) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gcc-9 (9.2.1-21+rpi1) ...
Setting up python3.7 (3.7.5-2) ...
Setting up cython (0.29.14-0.1) ...
Setting up libibverbs1:armhf (26.0-2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libpython3-dev:armhf (3.7.5-1) ...
Setting up libstdc++-9-dev:armhf (9.2.1-21+rpi1) ...
Setting up openssh-client (1:8.1p1-1) ...
Setting up python3 (3.7.5-1) ...
Setting up libhwloc-plugins:armhf (2.1.0+dfsg-2+rpi1) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-markupsafe (1.1.0-1) ...
Setting up python3.7-dev (3.7.5-2) ...
Setting up python3-tz (2019.3-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.13.0-1) ...
Setting up python3-roman (2.0.0-3) ...
Setting up python3-decorator (4.3.0-1.1) ...
Setting up python3-jinja2 (2.10.1-1) ...
Setting up python3-pygments (2.3.1+dfsg-1) ...
Setting up python3-pyparsing (2.4.2-1) ...
Setting up python3-certifi (2018.8.24-1) ...
Setting up libpython3-all-dev:armhf (3.7.5-1) ...
Setting up sphinx-common (1.8.5-4) ...
Setting up python3-idna (2.6-2) ...
Setting up cython3 (0.29.14-0.1) ...
Setting up g++-9 (9.2.1-21+rpi1) ...
Setting up python3-urllib3 (1.25.6-4) ...
Setting up python3-dateutil (2.7.3-3) ...
Setting up python3-lib2to3 (3.8.0-1) ...
Setting up python3-imagesize (1.0.0-1) ...
Setting up python3-pkg-resources (41.2.0-1) ...
Setting up python3-distutils (3.8.0-1) ...
Setting up dh-python (4.20191017) ...
Setting up python3-attr (18.2.0-1) ...
Setting up python3-setuptools (41.2.0-1) ...
Setting up libpmix2:armhf (3.1.4-1+b1) ...
Setting up python3-babel (2.6.0+dfsg.1-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-colorama (0.4.3-1) ...
Setting up python3-alabaster (0.7.8-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libopenmpi3:armhf (4.0.2-4+rpi1+b1) ...
Setting up python3-all (3.7.5-1) ...
Setting up python3-click (7.0-2) ...
Setting up python3-nose (1.3.7-4) ...
Setting up python3-packaging (19.1-2) ...
Setting up libhdf5-openmpi-103:armhf (1.10.4+repack-10) ...
Setting up python3-chardet (3.0.4-4) ...
Setting up python3-dev (3.7.5-1) ...
Setting up python3-requests (2.22.0-2) ...
Setting up python3-numpy (1:1.16.5-1) ...
Setting up python3-future (0.16.0-1) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up openmpi-bin (4.0.2-4+rpi1+b1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up python3-all-dev (3.7.5-1) ...
Setting up python3-scipy (1.3.3-3) ...
Setting up python3-pandas-lib (0.25.3+dfsg-4) ...
Setting up mpi-default-bin (1.13) ...
Setting up python3-mpi4py (3.0.3-1) ...
Setting up python3-pandas (0.25.3+dfsg-4) ...
Setting up python3-h5py (2.10.0-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.2) ...
Processing triggers for libc-bin (2.29-3+rpi1) ...
Processing triggers for sgml-base (1.29.1) ...
Setting up docutils-common (0.15.2+dfsg-1) ...
Processing triggers for sgml-base (1.29.1) ...
Setting up python3-docutils (0.15.2+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (1.8.5-4) ...
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode
update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-5+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-21+rpi1 gcc-9_9.2.1-21+rpi1 libc6-dev_2.29-3+rpi1 libstdc++-9-dev_9.2.1-21+rpi1 libstdc++6_9.2.1-21+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 bash-completion_1:2.8-6 binutils_2.33.1-5+rpi1 binutils-arm-linux-gnueabihf_2.33.1-5+rpi1 binutils-common_2.33.1-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-21+rpi1 cython_0.29.14-0.1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.2 debianutils_4.9 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 docutils-common_0.15.2+dfsg-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-21+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-21+rpi1 gcc-9-base_9.2.1-21+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 help2man_1.47.11 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libaec0_1.0.4-1 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-21+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-21+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-5+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-3+rpi1 libc-dev-bin_2.29-3+rpi1 libc6_2.29-3+rpi1 libc6-dev_2.29-3+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-21+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.2 libdpkg-perl_1.19.7 libedit2_3.1-20191025-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-21+rpi1 libgcc1_1:9.2.1-21+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-21+rpi1 libglib2.0-0_2.62.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-5 libgomp1_9.2.1-21+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhdf5-openmpi-103_1.10.4+repack-10 libhogweed5_3.5.1+really3.5.1-2 libhwloc-plugins_2.1.0+dfsg-2+rpi1 libhwloc15_2.1.0+dfsg-2+rpi1 libibverbs1_26.0-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libjs-jquery_3.3.1~dfsg-3 libjs-sphinxdoc_1.8.5-4 libjs-underscore_1.9.1~dfsg-1 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-4 libltdl7_2.4.6-11 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.6-1 libopenmpi3_4.0.2-4+rpi1+b1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-8-0_10.34-3 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpmix2_3.1.4-1+b1 libpython-stdlib_2.7.17-2 libpython2-stdlib_2.7.17-2 libpython2.7-minimal_2.7.17-1 libpython2.7-stdlib_2.7.17-1 libpython3-all-dev_3.7.5-1 libpython3-dev_3.7.5-1 libpython3-stdlib_3.7.5-1 libpython3.7_3.7.5-2 libpython3.7-dev_3.7.5-2 libpython3.7-minimal_3.7.5-2 libpython3.7-stdlib_3.7.5-2 libreadline7_7.0-5 libreadline8_8.0-3 librust-bitflags-dev_1.2.1-1 librust-cloudabi+default-dev_0.0.3-1 librust-cloudabi-dev_0.0.3-1 librust-fuchsia-zircon-dev_0.3.3-2 librust-fuchsia-zircon-sys-dev_0.3.3-2 librust-libc-dev_0.2.62-1 librust-phf-codegen-dev_0.7.23-1 librust-phf-generator-dev_0.7.23-1 librust-phf-shared-dev_0.7.23-2+b1 librust-rand-0.5+alloc-dev_0.5.5-2+rpi1 librust-rand-0.5+std-dev_0.5.5-2+rpi1 librust-rand-0.5-dev_0.5.5-2+rpi1 librust-rand-core-0.2+alloc-dev_0.2.2-1 librust-rand-core-0.2+std-dev_0.2.2-1 librust-rand-core-0.2-dev_0.2.2-1 librust-rand-core-dev_0.3.0-1 librust-siphasher-dev_0.2.3-1 librust-winapi-dev_0.3.6-1 librust-winapi-i686-pc-windows-gnu-dev_0.4.0-1 librust-winapi-x86-64-pc-windows-gnu-dev_0.4.0-1 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.2-2+rpi1 libselinux1_2.9-3 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-21+rpi1 libstdc++6_9.2.1-21+rpi1 libsub-override-perl_0.09-2 libsystemd0_243-8+rpi1 libsz2_1.0.4-1 libtasn1-6_4.14-3 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-21+rpi1 libuchardet0_0.0.6-3 libudev1_243-8+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mime-support_3.64 mount_2.34-0.1 mpi-default-bin_1.13 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_5.7 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_4.0.2-4+rpi1+b1 openmpi-common_4.0.2-4+rpi1 openssh-client_1:8.1p1-1 openssl_1.1.1d-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python_2.7.17-2 python-babel-localedata_2.6.0+dfsg.1-1 python-minimal_2.7.17-2 python2_2.7.17-2 python2-minimal_2.7.17-2 python2.7_2.7.17-1 python2.7-minimal_2.7.17-1 python3_3.7.5-1 python3-alabaster_0.7.8-1 python3-all_3.7.5-1 python3-all-dev_3.7.5-1 python3-attr_18.2.0-1 python3-babel_2.6.0+dfsg.1-1 python3-certifi_2018.8.24-1 python3-chardet_3.0.4-4 python3-click_7.0-2 python3-colorama_0.4.3-1 python3-dateutil_2.7.3-3 python3-decorator_4.3.0-1.1 python3-dev_3.7.5-1 python3-distutils_3.8.0-1 python3-docutils_0.15.2+dfsg-1 python3-future_0.16.0-1 python3-h5py_2.10.0-2 python3-idna_2.6-2 python3-imagesize_1.0.0-1 python3-jinja2_2.10.1-1 python3-lib2to3_3.8.0-1 python3-markupsafe_1.1.0-1 python3-minimal_3.7.5-1 python3-mpi4py_3.0.3-1 python3-nose_1.3.7-4 python3-numpy_1:1.16.5-1 python3-packaging_19.1-2 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4 python3-pkg-resources_41.2.0-1 python3-pygments_2.3.1+dfsg-1 python3-pyparsing_2.4.2-1 python3-requests_2.22.0-2 python3-roman_2.0.0-3 python3-scipy_1.3.3-3 python3-setuptools_41.2.0-1 python3-six_1.13.0-1 python3-sphinx_1.8.5-4 python3-tz_2019.3-1 python3-urllib3_1.25.6-4 python3.7_3.7.5-2 python3.7-dev_3.7.5-2 python3.7-minimal_3.7.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.29.1 sphinx-common_1.8.5-4 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Dec 22 06:59:46 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.7+dfsg-5.dsc
dpkg-source: info: extracting python-biom-format in /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg
dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.7+dfsg-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-c3a59a38-7409-46e9-917b-e6fda07277af
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.7+dfsg-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean --test-nose -i python{version} -p 3.7
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p 3.7
I: pybuild base:217: python3.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build --test-nose -i python{version} -p 3.7
I: pybuild base:217: /usr/bin/python3 setup.py build
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_filter.c -o build/temp.linux-armhf-3.7/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_transform.c -o build/temp.linux-armhf-3.7/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_subsample.c -o build/temp.linux-armhf-3.7/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:617:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v1.8.5
making output directory...
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices...
writing additional pages... search
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v1.8.5
making output directory...
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE }
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-nose -i python{version} -p 3.7
I: pybuild pybuild:272: cp -r /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/examples /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build
I: pybuild base:217: cd /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build; python3.7 -m nose -v
Correctly adds observation metadata without casting it. ... ok
Correctly adds observation metadata with casting. ... ok
Correctly adds sample metadata without casting it. ... ok
Correctly adds sample metadata with casting. ... ok
test_default (biom.tests.test_cli.test_show_install_info.TestShowInstallInfo) ... ok
Correctly raises politically correct error upon invalid input. ... ok
Correctly subsets observations in a table. ... ok
Correctly subsets samples in a hdf5 table ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
ok
Correctly subsets samples in a table. ... ok
Correctly subsets samples in a hdf5 table ... ok
TableSummarizer functions as expected ... ok
TableSummarizer functions as expected with qualitative=True ... ok
Correctly converts biom to classic. ... ok
Correctly converts biom to classic with metadata renaming. ... ok
Correctly converts classic to biom. ... ok
Correctly converts classic to biom with metadata. ... ok
Correctly converts json to HDF5 changing the observation metadata ... ok
Correctly converts json to HDF5 changing the sample metadata ... ok
test_bad_inputs (biom.tests.test_cli.test_table_normalizer.TableNormalizerTests) ... ok
test_basic (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_basic_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_rep_set_missing_id (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_rep_set_no_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_uc (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
test_uc_w_mapping (biom.tests.test_cli.test_uc_processor.TestUcProcessor) ... ok
Correctly invalidates a table that is... invalid. ... ok
Test an invalid HDF5 table ... ok
test_is_int (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
Correctly validates a table that is indeed... valid. ... ok
validates table:columns: fields ... ok
validates data: fields ... ok
Make sure we have a datetime stamp ... ok
Takes a dense matrix field and validates ... ok
Should match format string ... ok
validates format url ... ok
Should have some string for generated by ... ok
Test a valid HDF5 table ... ok
test_valid_hdf5_metadata_v200 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
test_valid_hdf5_metadata_v210 (biom.tests.test_cli.test_validate_table.TableValidatorTests) ... ok
Make sure we have a valid matrix type ... ok
Make sure we have a valid matrix type ... ok
Can be nullable or an object ... ok
Should just work. ... ok
validates rows: field ... ok
validates shape information ... ok
Takes a sparse matrix field and validates ... ok
Should be valid table type ... ok
test_test_empty (biom.tests.test_err.ErrModeTests) ... ok
test_test_obsdup (biom.tests.test_err.ErrModeTests) ... ok
test_test_obsmdsize (biom.tests.test_err.ErrModeTests) ... ok
test_test_obssize (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampdup (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampmdsize (biom.tests.test_err.ErrModeTests) ... ok
test_test_sampsize (biom.tests.test_err.ErrModeTests) ... ok
test_contains (biom.tests.test_err.ErrorProfileTests) ... ok
test_getcall (biom.tests.test_err.ErrorProfileTests) ... ok
test_handle_error (biom.tests.test_err.ErrorProfileTests) ... ok
test_register_unregister (biom.tests.test_err.ErrorProfileTests) ... ok
test_setcall (biom.tests.test_err.ErrorProfileTests) ... ok
test_state (biom.tests.test_err.ErrorProfileTests) ... ok
test_test (biom.tests.test_err.ErrorProfileTests) ... ok
test_errcheck (biom.tests.test_err.SupportTests) ... ok
test_errstate (biom.tests.test_err.SupportTests) ... ok
test_geterr (biom.tests.test_err.SupportTests) ... ok
test_geterrcall (biom.tests.test_err.SupportTests) ... ok
test_seterr (biom.tests.test_err.SupportTests) ... ok
test_seterrcall (biom.tests.test_err.SupportTests) ... ok
test_empty_metadata_inconsistent_handling (biom.tests.test_parse.ParseTests) ... ok
get a generatedby string ... ok
MetadataMap functions as expected ... ok
MetadataMap functions as expected w user-provided header ... ok
MetadataMap functions as expected w process_fns ... ok
test the biom otu table parser ... ok
tests for parse_biom_table when we do not have h5py ... ok
Make sure we can parse a HDF5 table through the same loader ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_parse.py:237: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
Table.from_hdf5(h5py.File('test_data/test.biom'))
ok
test the biom table parser subsetting ... ok
tests for parse_biom_table when we have h5py ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_parse.py:276: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = parse_biom_table(h5py.File('test_data/test.biom'))
ok
empty uc file returns empty Table ... ok
invalid query sequence identifier detected ... ok
single library seed observed ... ok
single new seed observed ... ok
new and library seeds observed ... ok
multiple new seeds observed ... ok
sample id with underscores is correctly processed ... ok
Yield tables binned by observation metadata ... ok
Yield tables binned by sample metadata ... ok
test_collapse_median (biom.tests.test_table.SparseTableTests) ... ok
Collapse observations by arbitrary metadata ... ok
Collapse observations by arbitary metadata ... ok
Collapse observations by 1-M metadata using divide mode ... ok
Collapse observations by arbitary metadata ... ok
Collapse samples by arbitrary metadata ... ok
Collapse samples by arbitary metadata ... ok
Collapse samples by 1-M metadata using divide mode ... ok
Collapse samples by arbitary metadata ... ok
Should convert other to sparse type ... ok
test_copy_data (biom.tests.test_table.SparseTableTests) ... ok
test_copy_ids (biom.tests.test_table.SparseTableTests) ... ok
test_copy_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_data (biom.tests.test_table.SparseTableTests) ... ok
check equality between tables ... ok
test_data_sparse (biom.tests.test_table.SparseTableTests) ... ok
Print out self in a delimited form ... ok
sparse equality ... ok
Parses a classic table ... ok
test_extract_data_from_tsv_badvalue_complaint (biom.tests.test_table.SparseTableTests) ... ok
test_filter_general_observation (biom.tests.test_table.SparseTableTests) ... ok
test_filter_general_sample (biom.tests.test_table.SparseTableTests) ... ok
test_filter_id_state (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_id (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_invert (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_filter_observations_remove_everything (biom.tests.test_table.SparseTableTests) ... ok
test_filter_out_full_table (biom.tests.test_table.SparseTableTests) ... ok
test_filter_return_type (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_id (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_invert (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_metadata (biom.tests.test_table.SparseTableTests) ... ok
test_filter_sample_remove_everything (biom.tests.test_table.SparseTableTests) ... ok
test_filter_table_with_zeros (biom.tests.test_table.SparseTableTests) ... ok
test_filter_using_list_of_ids (biom.tests.test_table.SparseTableTests) ... ok
test_from_json_issue_697 (biom.tests.test_table.SparseTableTests) ... ok
Test correctly computes density of table. ... ok
test_identify_bad_value (biom.tests.test_table.SparseTableTests) ... ok
Should iterate over samples ... ok
test_iter_data_dense (biom.tests.test_table.SparseTableTests) ... ok
test_iter_data_sparse (biom.tests.test_table.SparseTableTests) ... ok
Iterate over observations of sparse matrix ... ok
Iterates data by observations ... ok
Iterates data by observations from a single sample. ... ok
Iterates observations ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Should iterate pairwise over samples ... ok
Iterate over samples of sparse matrix ... ok
Iterates data by samples ... ok
Iterates data by samples with a single observation. ... ok
Iterates samples ... ok
Merge two tables ... ok
Return a list of nonzero positions ... ok
Returns nonzero counts over an axis ... ok
Returns nonzero counts over an axis ... ok
test_nonzero_csc_bug (biom.tests.test_table.SparseTableTests) ... ok
normalize observations by sample ... ok
normalize sample by observation ... ok
test_other_spmatrix_type (biom.tests.test_table.SparseTableTests) ... ok
test_pa (biom.tests.test_table.SparseTableTests) ... ok
test_pa_with_neg (biom.tests.test_table.SparseTableTests) ... ok
test_pa_works_if_something_has_been_zeroed (biom.tests.test_table.SparseTableTests) ... ok
rank observations by sample ... ok
rank observations by sample with alt method ... ok
rank samples by observation ... ok
Reduce method ... ok
table sorted by a function and provided axis ... ok
sorts tables by arbitrary order ... ok
test_subsample (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_by_id (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_by_id_observations_bug (biom.tests.test_table.SparseTableTests) ... ok
test_subsample_byid_with_replacement (biom.tests.test_table.SparseTableTests) ... ok
subsample would except when if metadata were present ... ok
test_subsample_with_replacement_n (biom.tests.test_table.SparseTableTests) ... ok
As in scikit-bio. Given a vector of observations, the total number of ... ok
As in scikit-bio. Given a vector of observations, the total number of ... ok
Test of sum! ... ok
Should convert a self styled vector to numpy type ... ok
Get a BIOM format string for a dense table of floats ... ok
Get a BIOM format string for a dense table of floats ... ok
Get a BIOM format string for a dense table of integers ... ok
Get a BIOM format string for a dense table of integers ... ok
test_to_json_empty (biom.tests.test_table.SparseTableTests) ... ok
Get a BIOM format string for a sparse table of floats ... ok
Get a BIOM format string for a sparse table of floats ... ok
Get a BIOM format string for a sparse table of integers ... ok
Get a BIOM format string for a sparse table of integers ... ok
Transform axis by arbitrary function ... ok
test_transform_return_type (biom.tests.test_table.SparseTableTests) ... ok
test_transform_sample (biom.tests.test_table.SparseTableTests) ... ok
Should transpose a sparse table ... ok
ids are updated as expected ... ok
test_update_ids_cache_bug (biom.tests.test_table.SparseTableTests) ... ok
ids are updated as expected ... ok
test_align_to_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_both (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_observation (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_sample (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_autodetect_vary_values (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_both (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_both_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_observation (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_observation_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_sample (biom.tests.test_table.SupportTests) ... ok
test_align_to_overlap_sample_no_overlap (biom.tests.test_table.SupportTests) ... ok
test_concat_different_order (biom.tests.test_table.SupportTests) ... ok
test_concat_empty (biom.tests.test_table.SupportTests) ... ok
test_concat_multiple (biom.tests.test_table.SupportTests) ... ok
test_concat_no_metadata_bug (biom.tests.test_table.SupportTests) ... ok
test_concat_observations (biom.tests.test_table.SupportTests) ... ok
test_concat_pad_on_subset (biom.tests.test_table.SupportTests) ... ok
test_concat_raise_overlap (biom.tests.test_table.SupportTests) ... ok
test_concat_samples (biom.tests.test_table.SupportTests) ... ok
test_concat_table_type (biom.tests.test_table.SupportTests) ... ok
test_head (biom.tests.test_table.SupportTests) ... ok
test_head_bounded (biom.tests.test_table.SupportTests) ... ok
test_head_overstep (biom.tests.test_table.SupportTests) ... ok
test_head_zero_or_neg (biom.tests.test_table.SupportTests) ... ok
returns a dict for list lookups ... ok
prefer x ... ok
test_remove_empty_both (biom.tests.test_table.SupportTests) ... /usr/lib/python3/dist-packages/scipy/sparse/_index.py:126: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
ok
test_remove_empty_identity (biom.tests.test_table.SupportTests) ... ok
test_remove_empty_obs (biom.tests.test_table.SupportTests) ... ok
test_remove_empty_sample (biom.tests.test_table.SupportTests) ... ok
Make sure a TableException can be raised ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
beat the table sparsely to death ... ok
convert (values, (row, col)) to scipy ... ok
Take a dict and convert to sparse ... ok
Take a list of dicts and condense down to a single dict ... ok
convert [[row,col,value], ...] to scipy ... ok
lists of nparrays to sparse ... ok
list of lil_matrix to sparse ... ok
Convert nparray to sparse ... ok
Convert to expected sparse types ... ok
add group metadata works correctly ... ok
add group metadata works with existing metadata ... ok
add_sample_metadata functions with single md entry ... ok
add_sample_metadata functions with existing metadata ... ok
add_metadata functions with more than one md entry ... ok
add_sample_metadata functions with more than one md entry ... ok
test_all_keys_dropped (biom.tests.test_table.TableTests) ... ok
Cast metadata objects to defaultdict to support default values ... ok
Properly converts ScipySparseMat vectors to dense numpy repr. ... ok
test_data_property (biom.tests.test_table.TableTests) ... ok
test_del_metadata_badaxis (biom.tests.test_table.TableTests) ... ok
test_del_metadata_defaults (biom.tests.test_table.TableTests) ... ok
test_del_metadata_empty_list (biom.tests.test_table.TableTests) ... ok
test_del_metadata_full (biom.tests.test_table.TableTests) ... ok
test_del_metadata_idempotent (biom.tests.test_table.TableTests) ... ok
test_del_metadata_jagged (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_observation (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_sample (biom.tests.test_table.TableTests) ... ok
test_del_metadata_keys_none_whole (biom.tests.test_table.TableTests) ... ok
test_del_metadata_multiple_keys (biom.tests.test_table.TableTests) ... ok
test_del_metadata_nomd (biom.tests.test_table.TableTests) ... ok
test_del_metadata_partial (biom.tests.test_table.TableTests) ... ok
What's your type? ... ok
Test whether two matrices are equal. ... ok
Verify ValueError raised! ... ok
Parse a hdf5 formatted BIOM table ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:629: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/test.biom'))
ok
test_from_hdf5_custom_parsers (biom.tests.test_table.TableTests) ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:610: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/test.biom'),
ok
Parse a hdf5 formatted BIOM table w/o metadata ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:595: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/empty.biom'))
ok
HDF5 biom parse successfully loads an empty table ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:914: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/empty.biom'))
ok
test_from_hdf5_issue_731 (biom.tests.test_table.TableTests) ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:619: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/test.biom'))
ok
test_from_hdf5_non_hdf5_file_or_group (biom.tests.test_table.TableTests) ... ok
Parse a observation subset of a hdf5 formatted BIOM table ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:835: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/test.biom'),
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3981: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:3983: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
for start, end in indptr_indices)
ok
Parse a observation subset of a hdf5 formatted BIOM table ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:807: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/test.biom'),
ok
Parse a sample subset of a hdf5 formatted BIOM table ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:743: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/test.biom'), ids=samples)
ok
Parse a sample subset of a hdf5 formatted BIOM table ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:715: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
t = Table.from_hdf5(h5py.File('test_data/test.biom'), ids=samples,
ok
hdf5 biom table parse throws error with invalid parameters ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:898: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
Table.from_hdf5(h5py.File('test_data/test.biom'),
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:903: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
Table.from_hdf5(h5py.File('test_data/test.biom'),
ok
test_from_tsv (biom.tests.test_table.TableTests) ... ok
test_from_tsv_dense (biom.tests.test_table.TableTests) ... ok
Test grabbing a column from the matrix. ... ok
Test grabbing a row from the matrix. ... ok
Return the value located in the matrix by the ids ... ok
getitem should work as expeceted ... ok
Test getting an element from the matrix. ... ok
Handles invalid input ... ok
Returns the observation group metadata ... ok
Returns the sample group metadata ... ok
Index all the ids!!! ... ok
Correctly handles invalid input. ... ok
returns the observation index ... ok
returns the sample index ... ok
to_sparse in constructor should be triggered ... ok
Combine ids, intersection ... ok
returns true if empty ... ok
test_length (biom.tests.test_table.TableTests) ... ok
test_max_observation (biom.tests.test_table.TableTests) ... ok
test_max_sample (biom.tests.test_table.TableTests) ... ok
test_max_whole (biom.tests.test_table.TableTests) ... ok
Correctly handles invalid input. ... ok
returns the observation metadata ... ok
returns the observation metadata for a given id ... ok
Return the sample metadata ... ok
returns the sample metadata for a given id ... ok
test_metadata_to_dataframe (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_badaxis (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_nomd (biom.tests.test_table.TableTests) ... ok
test_metadata_to_dataframe_uneven_list_metadata (biom.tests.test_table.TableTests) ... ok
test_min_observation (biom.tests.test_table.TableTests) ... ok
test_min_sample (biom.tests.test_table.TableTests) ... ok
test_min_whole (biom.tests.test_table.TableTests) ... ok
Test whether two matrices are not equal. ... ok
What is your NNZ? ... ok
test_nnz_issue_727 (biom.tests.test_table.TableTests) ... /usr/lib/python3/dist-packages/scipy/sparse/_index.py:84: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_intXint(row, col, x.flat[0])
ok
Verify observation exist! ... ok
__repr__ method of biom.table.Table ... ok
Verify samples exist! ... ok
What kind of shape are you in? ... ok
test_to_dataframe (biom.tests.test_table.TableTests) ... /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py:1478: FutureWarning: SparseDataFrame is deprecated and will be removed in a future version.
Use a regular DataFrame whose columns are SparseArrays instead.
See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more.
columns=['S1', 'S2', 'S3'])
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:4049: FutureWarning: SparseSeries is deprecated and will be removed in a future version.
Use a Series with sparse values instead.
>>> series = pd.Series(pd.SparseArray(...))
See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more.
for r in self.matrix_data.tocsr()]
/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py:4052: FutureWarning: SparseDataFrame is deprecated and will be removed in a future version.
Use a regular DataFrame whose columns are SparseArrays instead.
See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more.
return constructor(mat, index=index, columns=columns)
/usr/lib/python3/dist-packages/pandas/core/frame.py:3471: FutureWarning: SparseSeries is deprecated and will be removed in a future version.
Use a Series with sparse values instead.
>>> series = pd.Series(pd.SparseArray(...))
See http://pandas.pydata.org/pandas-docs/stable/user_guide/sparse.html#migrating for more.
return klass(values, index=self.index, name=items, fastpath=True)
ok
test_to_dataframe_dense (biom.tests.test_table.TableTests) ... ok
Write a file ... ok
test_to_hdf5_custom_formatters (biom.tests.test_table.TableTests) ... ok
Successfully writes an empty OTU table in HDF5 format ... ok
Successfully writes an empty OTU table in HDF5 format ... ok
test_to_hdf5_general_fallback_to_list (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_inconsistent_metadata_categories_observation (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_inconsistent_metadata_categories_sample (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_malformed_taxonomy (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_missing_metadata_observation (biom.tests.test_table.TableTests) ... ok
test_to_hdf5_missing_metadata_sample (biom.tests.test_table.TableTests) ... ok
Print out self in a delimited form ... ok
Combine unique ids, union ... ok
Make sure the metadata is sane (including obs/sample ids) ... ok
test_biom_open_empty (biom.tests.test_util.UtilTests) ... ok
test_biom_open_hdf5 (biom.tests.test_util.UtilTests) ... ok
test_biom_open_hdf5_no_h5py (biom.tests.test_util.UtilTests) ... SKIP: Skipping test: test_biom_open_hdf5_no_h5py: Can only be tested without H5PY
test_biom_open_json (biom.tests.test_util.UtilTests) ... ok
compute_counts_per_sample_stats functions as expected ... ok
test_compute_counts_per_sample_stats_empty (biom.tests.test_util.UtilTests) ... ok
compute_counts_per_sample_stats functions as expected ... ok
flatten should remove one level of nesting from nested sequences ... ok
flatten should not change non-nested sequences (except to list) ... ok
test_generate_subsamples (biom.tests.test_util.UtilTests) ... ok
Getting the biom project directory functions as expected. ... ok
test_is_hdf5_file (biom.tests.test_util.UtilTests) ... ok
test_load_classic (biom.tests.test_util.UtilTests) ... ok
test_load_table_gzip_unicode (biom.tests.test_util.UtilTests) ... ok
test_load_table_unicode (biom.tests.test_util.UtilTests) ... ok
natsort should perform numeric comparisons on strings ... ok
parse_biom_config_files functions as expected. ... ok
Make sure we have the expected md5 with varied input types ... ok
unzip(items) should be the inverse of zip(*items) ... ok
----------------------------------------------------------------------
Ran 336 tests in 16.803s
OK (SKIP=1)
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-biom-format.substvars
rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/
dh_auto_install -a -O--buildsystem=pybuild
install -d /<<BUILDDIR>>/python-biom-format-2.1.7\+dfsg/debian/tmp
pybuild --install --test-nose -i python{version} -p 3.7 --dest-dir /<<BUILDDIR>>/python-biom-format-2.1.7\+dfsg/debian/tmp
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format
running install
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_ids.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/util.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_converter.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_head.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_ids.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/table_validator.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__pycache__
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/long_lines.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_data
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__pycache__
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/bad_table.txt -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/empty.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/no-contents.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.json -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/test.json.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/test_data/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__pycache__
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/bench_tables
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/long_lines.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_err.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_parse.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_table.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/tests/__pycache__/test_util.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets/exercise_api.py -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/assets/exercise_cli.sh -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_filter.cpython-37m-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_transform.cpython-37m-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/__init__.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/table.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/exception.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/util.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/err.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/biom/__pycache__/parse.cpython-37.pyc -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__pycache__
creating /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/min_sparse_otu_table.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/obs_md.txt -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/rich_sparse_otu_table.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
copying /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/.pybuild/cpython3_3.7_biom-format/build/examples/sam_md.txt -> /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/examples
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/err.py to err.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/exception.py to exception.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/parse.py to parse.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/table.py to table.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/util.py to util.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_converter.py to table_converter.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_head.py to table_head.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_ids.py to table_ids.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/table_validator.py to table_validator.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/cli/util.py to util.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/long_lines.py to long_lines.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_err.py to test_err.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_parse.py to test_parse.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_table.py to test_table.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_util.py to test_util.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-37.pyc
running install_egg_info
Copying biom_format.egg-info to /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/lib/python3.7/dist-packages/biom_format-2.1.7.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /<<BUILDDIR>>/python-biom-format-2.1.7+dfsg/debian/python3-biom-format/usr/bin
I: pybuild pybuild:298: dh_numpy3
(grep -a -s -v python3:Depends debian/python3-biom-format.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biom-format.substvars.new
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
(grep -a -s -v python3:Depends debian/python-biom-format-doc.substvars; echo python3:Depends=python3-numpy) > debian/python-biom-format-doc.substvars.new
mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars
dh_installdocs -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format
install -d debian/.debhelper/generated/python3-biom-format
cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format
cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format
chown -R 0:0 debian/python3-biom-format/usr/share/doc
chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc
install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright
install -d debian/.debhelper/generated/python-biom-format-doc
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg'
dh_installexamples
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
find debian -name "*.c" -delete
find debian -name "*.pyx" -delete
# move tests from Python3 package to examples package
if [ ! -d biom/tests ] ; then \
mv `find debian/python*biom-format -name tests -type d` biom ; \
else \
find debian/python*biom-format -name tests -type d | xargs rm -rf ; \
fi
make[1]: Leaving directory '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg'
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 4.20191017
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7)
D: dh_python3 debhelper:107: skipping package: python-biom-format-doc
D: dh_python3 debhelper:153: source=python-biom-format, binary packages=['python3-biom-format']
D: dh_python3 dh_python3:183: processing package python3-biom-format...
D: dh_python3 fs:49: moving files from debian/python3-biom-format/usr/lib/python3.7/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))'
D: dh_python3 fs:260: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.7.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-biom-format
D: dh_python3 pydist:138: trying to find dependency for click (python=None)
D: dh_python3 pydist:138: trying to find dependency for future>=0.16.0 (python=None)
D: dh_python3 pydist:138: trying to find dependency for numpy>=1.9.2 (python=None)
D: dh_python3 pydist:138: trying to find dependency for pandas>=0.20.0 (python=None)
D: dh_python3 pydist:138: trying to find dependency for scipy>=0.13.0 (python=None)
D: dh_python3 pydist:138: trying to find dependency for six>=1.10.0 (python=None)
D: dh_python3 depends:275: D={'python3 (<< 3.8)', 'python3 (>= 3.7~)', 'python3:any', 'python3-scipy', 'python3-six (>= 1.10.0)', 'python3-numpy', 'python3-future', 'python3-click', 'python3-pandas'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-biom-format
chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian
gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian
cd '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg'
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg'
dh_fixperms
find debian/python3-biom-format -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name exercise_cli.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/python-biom-format-2.1.7+dfsg'
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
dh_strip -a -O--buildsystem=pybuild
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5d
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5d/bcef039e40d5cca7593104a9c1223f6f43e38b.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5d/bcef039e40d5cca7593104a9c1223f6f43e38b.debug
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5d/bcef039e40d5cca7593104a9c1223f6f43e38b.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5d/bcef039e40d5cca7593104a9c1223f6f43e38b.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/233508de5aa8854d1fd3b599136ee6851b84dc.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/233508de5aa8854d1fd3b599136ee6851b84dc.debug
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/233508de5aa8854d1fd3b599136ee6851b84dc.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a7/233508de5aa8854d1fd3b599136ee6851b84dc.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f/ce3127f916415826a50fafd3404db81645d8da.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f/ce3127f916415826a50fafd3404db81645d8da.debug
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f/ce3127f916415826a50fafd3404db81645d8da.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/5f/ce3127f916415826a50fafd3404db81645d8da.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc
ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-biom-format/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/DEBIAN
dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst
cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst
chown 0:0 -- debian/python3-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm
cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm
chown 0:0 -- debian/python3-biom-format/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-biom-format.substvars
echo misc:Pre-Depends= >> debian/python3-biom-format.substvars
install -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=5dbcef039e40d5cca7593104a9c1223f6f43e38b 5fce3127f916415826a50fafd3404db81645d8da a7233508de5aa8854d1fd3b599136ee6851b84dc" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format -UMulti-Arch
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/python3-biom-format/DEBIAN/control
chown 0:0 -- debian/python3-biom-format/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums
chown 0:0 -- debian/python3-biom-format/DEBIAN/md5sums
cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
chown 0:0 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --build debian/python3-biom-format ..
dpkg-deb --build debian/.debhelper/python3-biom-format/dbgsym-root ..
dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.7+dfsg-5_armhf.deb'.
dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.7+dfsg-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../python-biom-format_2.1.7+dfsg-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-12-27T05:56:28Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-biom-format_2.1.7+dfsg-5_armhf.changes:
----------------------------------------------
Format: 1.8
Date: Sun, 22 Dec 2019 07:51:11 +0100
Source: python-biom-format
Binary: python3-biom-format python3-biom-format-dbgsym
Architecture: armhf
Version: 2.1.7+dfsg-5
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Closes: 943622
Changes:
python-biom-format (2.1.7+dfsg-5) unstable; urgency=medium
.
* Set upstream metadata fields: Bug-Database, Repository, Repository-
Browse.
* Fix Build time test
Closes: #943622
Checksums-Sha1:
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Checksums-Sha256:
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Files:
c23000281b965293beb87f8eab86572d 8293 python optional python-biom-format_2.1.7+dfsg-5_armhf.buildinfo
95d1242711c8a1bc0a237e55311035ef 226832 debug optional python3-biom-format-dbgsym_2.1.7+dfsg-5_armhf.deb
dfc4b957e5a53325617141a072c8e762 126012 python optional python3-biom-format_2.1.7+dfsg-5_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-biom-format-dbgsym_2.1.7+dfsg-5_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 226832 bytes: control archive=704 bytes.
509 bytes, 12 lines control
417 bytes, 4 lines md5sums
Package: python3-biom-format-dbgsym
Source: python-biom-format
Version: 2.1.7+dfsg-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 272
Depends: python3-biom-format (= 2.1.7+dfsg-5)
Section: debug
Priority: optional
Description: debug symbols for python3-biom-format
Build-Ids: 5dbcef039e40d5cca7593104a9c1223f6f43e38b 5fce3127f916415826a50fafd3404db81645d8da a7233508de5aa8854d1fd3b599136ee6851b84dc
drwxr-xr-x root/root 0 2019-12-22 06:51 ./
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/debug/.build-id/5d/
-rw-r--r-- root/root 115756 2019-12-22 06:51 ./usr/lib/debug/.build-id/5d/bcef039e40d5cca7593104a9c1223f6f43e38b.debug
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/debug/.build-id/5f/
-rw-r--r-- root/root 47632 2019-12-22 06:51 ./usr/lib/debug/.build-id/5f/ce3127f916415826a50fafd3404db81645d8da.debug
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/debug/.build-id/a7/
-rw-r--r-- root/root 82848 2019-12-22 06:51 ./usr/lib/debug/.build-id/a7/233508de5aa8854d1fd3b599136ee6851b84dc.debug
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 15740 2019-12-22 06:51 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/share/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-22 06:51 ./usr/share/doc/python3-biom-format-dbgsym -> python3-biom-format
python3-biom-format_2.1.7+dfsg-5_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 126012 bytes: control archive=2704 bytes.
1954 bytes, 36 lines control
4238 bytes, 46 lines md5sums
264 bytes, 12 lines * postinst #!/bin/sh
413 bytes, 12 lines * prerm #!/bin/sh
Package: python3-biom-format
Source: python-biom-format
Version: 2.1.7+dfsg-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 717
Depends: python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, python3 (<< 3.8), python3 (>= 3.7~), python3-click, python3-future, python3-pandas, python3-scipy, python3-six (>= 1.10.0), python3:any, libc6 (>= 2.4)
Suggests: python-biom-format-doc
Breaks: biom-format-tools (<< 2.1.7+dfsg-3)
Replaces: biom-format-tools (<< 2.1.7+dfsg-3)
Provides: biom-format-tools
Section: python
Priority: optional
Homepage: http://biom-format.org/
Description: Biological Observation Matrix (BIOM) format (Python 3)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 3 interpreter.
drwxr-xr-x root/root 0 2019-12-22 06:51 ./
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/bin/
-rwxr-xr-x root/root 388 2019-12-22 06:51 ./usr/bin/biom
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/
-rw-r--r-- root/root 2521 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/__init__.py
-rw-r--r-- root/root 85324 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 64568 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 40072 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/assets/
-rw-r--r-- root/root 3582 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/assets/exercise_api.py
-rwxr-xr-x root/root 2205 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/assets/exercise_cli.sh
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom/cli/
-rw-r--r-- root/root 1242 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/__init__.py
-rw-r--r-- root/root 3505 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/installation_informer.py
-rw-r--r-- root/root 7632 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/metadata_adder.py
-rw-r--r-- root/root 8852 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/table_converter.py
-rw-r--r-- root/root 1471 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/table_head.py
-rw-r--r-- root/root 1166 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/table_ids.py
-rw-r--r-- root/root 2711 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/table_normalizer.py
-rw-r--r-- root/root 5381 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/table_subsetter.py
-rw-r--r-- root/root 5382 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/table_summarizer.py
-rw-r--r-- root/root 21788 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/table_validator.py
-rw-r--r-- root/root 2950 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/uc_processor.py
-rw-r--r-- root/root 1062 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/cli/util.py
-rw-r--r-- root/root 14268 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/err.py
-rw-r--r-- root/root 1450 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/exception.py
-rw-r--r-- root/root 22032 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/parse.py
-rw-r--r-- root/root 180787 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/table.py
-rw-r--r-- root/root 16833 2018-09-28 19:24 ./usr/lib/python3/dist-packages/biom/util.py
drwxr-xr-x root/root 0 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom_format-2.1.7.egg-info/
-rw-r--r-- root/root 1558 2019-12-22 06:51 ./usr/lib/python3/dist-packages/biom_format-2.1.7.egg-info/PKG-INFO
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| Summary |
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Build Architecture: armhf
Build-Space: 111036
Build-Time: 75
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 925
Job: python-biom-format_2.1.7+dfsg-5
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 1021
Source-Version: 2.1.7+dfsg-5
Space: 111036
Status: successful
Version: 2.1.7+dfsg-5
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Finished at 2019-12-27T05:56:28Z
Build needed 00:17:01, 111036k disk space