python-biom-format →
2.1.6+dfsg-2 →
armhf → 2018-06-26 07:01:44
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| python-biom-format 2.1.6+dfsg-2 (armhf) Tue, 26 Jun 2018 06:29:40 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.6+dfsg-2
Source Version: 2.1.6+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-6b4230fe-2064-446c-a67f-7236fc2eeb1a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
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Reading package lists...
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| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8533 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main python-biom-format 2.1.6+dfsg-2 (dsc) [2948 B]
Get:2 http://172.17.0.1/private buster-staging/main python-biom-format 2.1.6+dfsg-2 (tar) [8522 kB]
Get:3 http://172.17.0.1/private buster-staging/main python-biom-format 2.1.6+dfsg-2 (diff) [8256 B]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-eJhYv5/python-biom-format-2.1.6+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-eJhYv5' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-nqkWo6/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-nqkWo6/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-nqkWo6/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-nqkWo6/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-nqkWo6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-nqkWo6/apt_archive ./ Sources [349 B]
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Reading package lists...
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Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libssl1.1 openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
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debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14003 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-python, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-click, python-cogent, python-future, python-nose, python-pandas, python-setuptools, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
Filtered Build-Depends: debhelper (>= 11~), dh-python, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-click, python-cogent, python-future, python-nose, python-pandas, python-setuptools, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-nqkWo6/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-nqkWo6/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-nqkWo6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-nqkWo6/apt_archive ./ Sources [616 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n libnss-systemd libpam-systemd
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common dwz file fonts-lyx gettext gettext-base groff-base help2man
intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-100
libicu-le-hb0 libicu60 libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev
libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsz2 libtimedate-perl
libtool libxml2 m4 man-db mime-support po-debconf python
python-babel-localedata python-backports.functools-lru-cache python-click
python-cogent python-colorama python-configparser python-cycler
python-dateutil python-decorator python-dev python-future python-h5py
python-kiwisolver python-matplotlib python-matplotlib-data python-minimal
python-nose python-numpy python-pandas python-pandas-lib
python-pkg-resources python-pyparsing python-scipy python-setuptools
python-six python-subprocess32 python-tz python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-alabaster
python3-all python3-all-dev python3-babel python3-certifi python3-chardet
python3-click python3-colorama python3-dateutil python3-decorator
python3-dev python3-distutils python3-docutils python3-future python3-h5py
python3-idna python3-imagesize python3-jinja2 python3-lib2to3
python3-markupsafe python3-minimal python3-nose python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources
python3-pygments python3-pyparsing python3-requests python3-roman
python3-scipy python3-setuptools python3-six python3-sphinx python3-tz
python3-urllib3 python3.6 python3.6-dev python3.6-minimal sgml-base
sphinx-common ttf-bitstream-vera xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk
python-cogent-doc cdbfasta clustalw fasttree mafft mothur parsinsert
rdp-classifier rtax python-cycler-doc python-future-doc python-h5py-doc
dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython librsvg2-common
python-cairocffi python-configobj python-excelerator python-gobject
python-matplotlib-doc python-qt4 python-sip python-tornado python-traits
python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft
python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc
python-pandas-doc python-pyparsing-doc python-scipy-doc
python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc
python3-tk python3-venv docutils-doc fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended python-jinja2-doc python3-numpy-dbg
python3-cryptography python3-openssl python3-socks python3-sphinx-rtd-theme
libjs-mathjax texlive-fonts-recommended texlive-generic-extra latexmk
imagemagick-6.q16 sphinx-doc python3.6-venv python3.6-doc sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl blast2
cd-hit clearcut dialign muscle python-pil python-tk python-tables
python-numexpr python-xlrd python-statsmodels python-openpyxl python-xlwt
python-bs4 python-html5lib python-lxml libpaper-utils python3-pil
python3-matplotlib python3-numexpr python3-tables python3-bs4
python3-html5lib python3-lxml
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common dwz file fonts-lyx gettext gettext-base groff-base help2man
intltool-debian libaec0 libarchive-zip-perl libblas3 libbsd0 libcroco3
libelf1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-100
libicu-le-hb0 libicu60 libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev
libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsz2 libtimedate-perl
libtool libxml2 m4 man-db mime-support po-debconf python
python-babel-localedata python-backports.functools-lru-cache python-click
python-cogent python-colorama python-configparser python-cycler
python-dateutil python-decorator python-dev python-future python-h5py
python-kiwisolver python-matplotlib python-matplotlib-data python-minimal
python-nose python-numpy python-pandas python-pandas-lib
python-pkg-resources python-pyparsing python-scipy python-setuptools
python-six python-subprocess32 python-tz python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-alabaster
python3-all python3-all-dev python3-babel python3-certifi python3-chardet
python3-click python3-colorama python3-dateutil python3-decorator
python3-dev python3-distutils python3-docutils python3-future python3-h5py
python3-idna python3-imagesize python3-jinja2 python3-lib2to3
python3-markupsafe python3-minimal python3-nose python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources
python3-pygments python3-pyparsing python3-requests python3-roman
python3-scipy python3-setuptools python3-six python3-sphinx python3-tz
python3-urllib3 python3.6 python3.6-dev python3.6-minimal
sbuild-build-depends-python-biom-format-dummy sgml-base sphinx-common
ttf-bitstream-vera xml-core
0 upgraded, 150 newly installed, 0 to remove and 18 not upgraded.
Need to get 163 MB/164 MB of archives.
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Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-1 [393 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-1 [1077 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-1 [1841 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-1 [298 kB]
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Get:16 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
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Get:19 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6~rc1-4 [1381 kB]
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Get:48 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.6-1+b1 [799 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
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Get:53 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
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Get:58 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-3 [204 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf fonts-lyx all 2.3.0-2 [198 kB]
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Get:69 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-1 [886 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-1 [27.6 MB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.6~rc1-4 [1185 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.6~rc1-4 [43.7 MB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.6.5-3 [19.7 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.6.5-3 [1064 B]
Get:77 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf python-backports.functools-lru-cache all 1.5-1 [6456 B]
Get:79 http://172.17.0.1/private buster-staging/main armhf python-colorama all 0.3.7-1 [25.7 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf python-click all 6.7-4 [56.7 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf python-numpy armhf 1:1.14.4-1 [1780 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf python-six all 1.11.0-2 [15.1 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf python-dateutil all 2.6.1-1 [61.1 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf python-matplotlib-data all 2.2.2-4 [4123 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf python-tz all 2018.4-1 [33.5 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf python-cycler all 0.10.0-1 [7448 B]
Get:89 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 39.2.0-1 [171 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf python-kiwisolver armhf 1.0.1-2 [56.9 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf python-subprocess32 armhf 3.5.2-1 [28.7 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf python-matplotlib armhf 2.2.2-4 [4993 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf python-cogent armhf 1.9-12 [2433 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf python-configparser all 3.5.0-1 [60.4 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf python-decorator all 4.3.0-1 [14.2 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-1 [289 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:98 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:99 http://172.17.0.1/private buster-staging/main armhf python-future all 0.15.2-4 [347 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf python-h5py armhf 2.7.1-2 [552 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf python-nose all 1.3.7-4 [132 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf python-pandas-lib armhf 0.22.0-8 [2602 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf python-pandas all 0.22.0-8 [2778 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf python-scipy armhf 0.19.1-2 [8538 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 39.2.0-1 [375 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6~rc1-3 [79.1 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6~rc1-3 [144 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.6.5-3 [1064 B]
Get:109 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.6~rc1-4 [508 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.6.5-3 [1268 B]
Get:111 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.6.5-3 [1064 B]
Get:112 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 39.2.0-1 [142 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf python3-tz all 2018.4-1 [26.9 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf python3-babel all 2.4.0+dfsg.1-2 [83.7 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf python3-certifi all 2018.4.16-1 [143 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf python3-chardet all 3.0.4-1 [80.2 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf python3-colorama all 0.3.7-1 [18.1 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf python3-click all 6.7-4 [56.7 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.11.0-2 [15.2 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf python3-dateutil all 2.6.1-1 [52.8 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python3-decorator all 4.3.0-1 [14.3 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf python3-roman all 2.0.0-3 [8768 B]
Get:123 http://172.17.0.1/private buster-staging/main armhf python3-docutils all 0.14+dfsg-3 [377 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf python3-future all 0.15.2-4 [346 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.14.4-1 [1785 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf python3-h5py armhf 2.7.1-2 [765 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf python3-idna all 2.6-1 [34.3 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf python3-imagesize all 1.0.0-1 [4960 B]
Get:129 http://172.17.0.1/private buster-staging/main armhf python3-markupsafe armhf 1.0-1+b1 [14.1 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf python3-jinja2 all 2.10-1 [106 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf python3-nose all 1.3.7-4 [132 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf python3-packaging all 17.1-1 [18.3 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf python3-pandas-lib armhf 0.22.0-8 [2574 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf python3-pandas all 0.22.0-8 [2777 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf python3-pygments all 2.2.0+dfsg-1 [588 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf python3-urllib3 all 1.22-1 [97.9 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf python3-requests all 2.18.4-2 [77.1 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf python3-scipy armhf 0.19.1-2 [8484 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 39.2.0-1 [292 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf python3-alabaster all 0.7.8-1 [18.4 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.7.5-3 [435 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf python3-sphinx all 1.7.5-3 [446 kB]
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Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.14+dfsg-3) ...
Processing triggers for sgml-base (1.29) ...
Setting up python3-docutils (0.14+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (1.7.5-3) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gettext (0.19.8.1-6) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.3.4) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 bash-completion_1:2.8-1 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 cython_0.26.1-0.4 cython3_0.26.1-0.4 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.4 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180326 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 docutils-common_0.14+dfsg-3 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 fonts-lyx_2.3.0-2 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-6-base_6.4.0-18+rpi1 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 help2man_1.47.6 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libaec0_1.0.2-1 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblas3_3.8.0-1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.4 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-19 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.7.6-1+b1 libhdf5-100_1.10.0-patch1+docs-4+b2 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjs-jquery_3.2.1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.7.5-3 libjs-underscore_1.8.3~dfsg-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 liblapack3_3.8.0-1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblocale-gettext-perl_1.07-3+b2 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-4 libnss-systemd_238-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-1 libpython2.7-dev_2.7.15-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libpython3-all-dev_3.6.5-3 libpython3-dev_3.6.5-3 libpython3-stdlib_3.6.5-3 libpython3.6_3.6.6~rc1-4 libpython3.6-dev_3.6.6~rc1-4 libpython3.6-minimal_3.6.6~rc1-4 libpython3.6-stdlib_3.6.6~rc1-4 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libuuid1_2.32-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mime-support_3.61 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python_2.7.15-3 python-babel-localedata_2.4.0+dfsg.1-2 python-backports.functools-lru-cache_1.5-1 python-click_6.7-4 python-cogent_1.9-12 python-colorama_0.3.7-1 python-configparser_3.5.0-1 python-cycler_0.10.0-1 python-dateutil_2.6.1-1 python-decorator_4.3.0-1 python-dev_2.7.15-3 python-future_0.15.2-4 python-h5py_2.7.1-2 python-kiwisolver_1.0.1-2 python-matplotlib_2.2.2-4 python-matplotlib-data_2.2.2-4 python-minimal_2.7.15-3 python-nose_1.3.7-4 python-numpy_1:1.14.4-1 python-pandas_0.22.0-8 python-pandas-lib_0.22.0-8 python-pkg-resources_39.2.0-1 python-pyparsing_2.2.0+dfsg1-2 python-scipy_0.19.1-2 python-setuptools_39.2.0-1 python-six_1.11.0-2 python-subprocess32_3.5.2-1 python-tz_2018.4-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-1 python2.7-dev_2.7.15-1 python2.7-minimal_2.7.15-1 python3_3.6.5-3 python3-alabaster_0.7.8-1 python3-all_3.6.5-3 python3-all-dev_3.6.5-3 python3-babel_2.4.0+dfsg.1-2 python3-certifi_2018.4.16-1 python3-chardet_3.0.4-1 python3-click_6.7-4 python3-colorama_0.3.7-1 python3-dateutil_2.6.1-1 python3-decorator_4.3.0-1 python3-dev_3.6.5-3 python3-distutils_3.6.6~rc1-3 python3-docutils_0.14+dfsg-3 python3-future_0.15.2-4 python3-h5py_2.7.1-2 python3-idna_2.6-1 python3-imagesize_1.0.0-1 python3-jinja2_2.10-1 python3-lib2to3_3.6.6~rc1-3 python3-markupsafe_1.0-1+b1 python3-minimal_3.6.5-3 python3-nose_1.3.7-4 python3-numpy_1:1.14.4-1 python3-packaging_17.1-1 python3-pandas_0.22.0-8 python3-pandas-lib_0.22.0-8 python3-pkg-resources_39.2.0-1 python3-pygments_2.2.0+dfsg-1 python3-pyparsing_2.2.0+dfsg1-2 python3-requests_2.18.4-2 python3-roman_2.0.0-3 python3-scipy_0.19.1-2 python3-setuptools_39.2.0-1 python3-six_1.11.0-2 python3-sphinx_1.7.5-3 python3-tz_2018.4-1 python3-urllib3_1.22-1 python3.6_3.6.6~rc1-4 python3.6-dev_3.6.6~rc1-4 python3.6-minimal_3.6.6~rc1-4 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.7.5-3 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 ttf-bitstream-vera_1.10-8 tzdata_2018e-1 udev_238-4 util-linux_2.32-0.1 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Jun 21 03:36:25 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.6+dfsg-2.dsc
dpkg-source: info: extracting python-biom-format in /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg
dpkg-source: info: unpacking python-biom-format_2.1.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.6+dfsg-2.debian.tar.xz
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying random_seed_for_test.patch
dpkg-source: info: applying sphinx_1.6.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-6b4230fe-2064-446c-a67f-7236fc2eeb1a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.6+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build python-biom-format-2.1.6+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean --test-nose -i python{version} -p 2.7
I: pybuild base:217: python2.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
pybuild --clean --test-nose -i python{version} -p 3.6
I: pybuild base:217: python3.6 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.6' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python-biom-format.substvars debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/biom-format-tools.substvars debian/files
rm -fr -- debian/python-biom-format/ debian/tmp/ debian/python3-biom-format/ debian/python-biom-format-doc/ debian/biom-format-tools/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p 2.7
I: pybuild base:217: python2.7 setup.py config
running config
pybuild --configure --test-nose -i python{version} -p 3.6
I: pybuild base:217: python3.6 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build --test-nose -i python{version} -p 2.7
I: pybuild base:217: /usr/bin/python setup.py build
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests
copying tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests
copying tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests
copying tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests
copying tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests
copying tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/cli
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
copying tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_data
copying tests/test_data/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/tests/test_data
running egg_info
creating biom_format.egg-info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/assets
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_filter.c -o build/temp.linux-armhf-2.7/biom/_filter.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:504:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-eavNeJ/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_filter.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_transform.c -o build/temp.linux-armhf-2.7/biom/_transform.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:504:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-eavNeJ/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_transform.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_subsample.c -o build/temp.linux-armhf-2.7/biom/_subsample.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:504:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-eavNeJ/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build/biom/_subsample.so
pybuild --build --test-nose -i python{version} -p 3.6
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests
copying tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests
copying tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests
copying tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests
copying tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests
copying tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/cli
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
copying tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_data
copying tests/test_data/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/tests/test_data
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/assets
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.6
creating build/temp.linux-armhf-3.6/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.6m -c biom/_filter.c -o build/temp.linux-armhf-3.6/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:504:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/_filter.cpython-36m-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.6m -c biom/_transform.c -o build/temp.linux-armhf-3.6/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:504:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/_transform.cpython-36m-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.6m -c biom/_subsample.c -o build/temp.linux-armhf-3.6/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:504:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build/biom/_subsample.cpython-36m-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v1.7.5
WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead.
making output directory...
loading pickled environment... not yet created
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'biom.table'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices...
writing additional pages... search
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 7 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v1.7.5
WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead.
making output directory...
loading pickled environment... not yet created
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'biom.table'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE }
build succeeded, 3 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<BUILDDIR>>/python-biom-format-2.1.6+dfsg'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-nose -i python{version} -p 2.7
I: pybuild pybuild:267: cp -r /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/examples /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/tests /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build
I: pybuild base:217: cd /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython2_2.7_biom-format/build; python2.7 -m nose tests
.......S.S................S........SSS..................................S.S.................................................................................................................../usr/lib/python2.7/dist-packages/scipy/sparse/compressed.py:774: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
SparseEfficiencyWarning)
.........................................SSSSSSSSSS.........................................SSSSS....S.................
----------------------------------------------------------------------
Ran 309 tests in 18.186s
OK (SKIP=24)
pybuild --test --test-nose -i python{version} -p 3.6
I: pybuild pybuild:267: cp -r /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/examples /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/tests /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build
I: pybuild base:217: cd /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build; python3.6 -m nose tests
....Segmentation fault
E: pybuild pybuild:336: test: plugin distutils failed with: exit code=139: cd /<<BUILDDIR>>/python-biom-format-2.1.6+dfsg/.pybuild/cpython3_3.6_biom-format/build; python3.6 -m nose tests
dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.6 returned exit code 13
debian/rules:20: recipe for target 'build-arch' failed
make: *** [build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-06-26T07:00:43Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 244
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1564
Job: python-biom-format_2.1.6+dfsg-2
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 1863
Source-Version: 2.1.6+dfsg-2
Space: 0
Status: failed
Version: 2.1.6+dfsg-2
--------------------------------------------------------------------------------
Finished at 2018-06-26T07:00:43Z
Build needed 00:00:00, 0k disc space