python-biom-format →
2.1.5+dfsg-7+b1 →
armhf → 2017-10-29 12:31:51
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| python-biom-format 2.1.5+dfsg-7+b1 (armhf) Sun, 29 Oct 2017 12:18:14 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.5+dfsg-7+b1
Source Version: 2.1.5+dfsg-7
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-89f41a46-4032-466b-a52f-1a6f3bbd7a30' with '<<CHROOT>>'
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| Update chroot |
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Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
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Reading package lists...
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+------------------------------------------------------------------------------+
| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/python-biom-format.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 11.9 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main python-biom-format 2.1.5+dfsg-7 (dsc) [2999 B]
Get:2 http://172.17.0.1/private buster-staging/main python-biom-format 2.1.5+dfsg-7 (tar) [11.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main python-biom-format 2.1.5+dfsg-7 (diff) [8336 B]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-c5BYOo/python-biom-format-2.1.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-c5BYOo' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
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Setup apt archive
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Mfo2Hb/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Mfo2Hb/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ InRelease
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Get:4 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ Sources [349 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 73 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15082 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-python, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-click, python-cogent, python-future, python-nose, python-setuptools, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-setuptools, python3-scipy, python-sphinx
Filtered Build-Depends: debhelper (>= 10), dh-python, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-click, python-cogent, python-future, python-nose, python-setuptools, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-setuptools, python3-scipy, python-sphinx
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ Sources [605 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ Packages [688 B]
Fetched 2626 B in 0s (7705 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libreadline5 libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils cpp-7
cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common file fontconfig fontconfig-config fonts-lyx g++-7 gcc-7
gcc-7-base gettext gettext-base gnome-icon-theme groff-base
gtk-update-icon-cache help2man hicolor-icon-theme intltool-debian libaec0
libarchive-zip-perl libasan4 libatk1.0-0 libatk1.0-data libatomic1
libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbsd0
libcairo2 libcc1-0 libcilkrts5 libcroco3 libcups2 libdatrie1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgcc-7-dev libgcc1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran4
libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0
libgtk2.0-common libharfbuzz0b libhdf5-100 libicu57 libjbig0 libjpeg62-turbo
libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblocale-gettext-perl
libmagic-mgc libmagic1 libmpdec2 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-dev libpython-stdlib
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.5
libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libpython3.6
libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib librsvg2-2
librsvg2-common libsigsegv2 libstdc++-7-dev libstdc++6 libsz2 libthai-data
libthai0 libtiff5 libtimedate-perl libtool libubsan0 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1
libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2
libxrandr2 libxrender1 m4 man-db mime-support po-debconf python
python-alabaster python-babel python-babel-localedata python-certifi
python-chardet python-click python-cogent python-colorama
python-configparser python-cycler python-dateutil python-decorator
python-dev python-docutils python-functools32 python-future python-h5py
python-idna python-imagesize python-jinja2 python-markupsafe
python-matplotlib python-matplotlib-data python-minimal python-nose
python-numpy python-pkg-resources python-pygments python-pyparsing
python-requests python-roman python-scipy python-setuptools python-six
python-sphinx python-subprocess32 python-typing python-tz python-urllib3
python2.7 python2.7-dev python2.7-minimal python3 python3-all
python3-all-dev python3-click python3-colorama python3-decorator python3-dev
python3-future python3-h5py python3-minimal python3-nose python3-numpy
python3-pkg-resources python3-scipy python3-setuptools python3-six python3.5
python3.5-dev python3.5-minimal python3.6 python3.6-dev python3.6-minimal
sgml-base shared-mime-info sphinx-common ttf-bitstream-vera ucf xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-7-locales cython-doc dh-make gcc-7-doc libstdc++6-7-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan4-dbg
liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg
libquadmath0-dbg gettext-doc libasprintf-dev libgettextpo-dev groff
cups-common krb5-doc krb5-user gvfs libjs-jquery-ui-docs librsvg2-bin
libstdc++-7-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
less www-browser libmail-box-perl python-doc python-tk python-cogent-doc
cdbfasta clustalw fasttree mafft mothur parsinsert rdp-classifier rtax
python-cycler-doc fonts-linuxlibertine | ttf-linux-libertine
texlive-lang-french texlive-latex-base texlive-latex-recommended
python-future-doc python-h5py-doc python-jinja2-doc dvipng ffmpeg
gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi
python-configobj python-excelerator python-gobject python-gtk2
python-matplotlib-doc python-qt4 python-sip python-tornado python-traits
python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft
python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc
python-pyparsing-doc python-cryptography python-openssl python-socks
python-scipy-doc python-setuptools-doc python-sphinx-rtd-theme libjs-mathjax
texlive-fonts-recommended texlive-generic-extra latexmk imagemagick-6.q16
sphinx-doc python-ntlm python2.7-doc binfmt-support python3-doc python3-tk
python3-venv python3-numpy-dbg python3.5-venv python3.5-doc python3.6-venv
python3.6-doc sgml-base-doc
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libgdk-pixbuf2.0-bin
libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin javascript-common
krb5-locales libltdl-dev libmail-sendmail-perl blast2 cd-hit clearcut
dialign muscle docutils-doc libpaper-utils python-pil python-glade2
python-imaging python-tk python-enum34 python-cryptography python-ipaddress
python-openssl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common file fontconfig fontconfig-config fonts-lyx gettext
gettext-base gnome-icon-theme groff-base gtk-update-icon-cache help2man
hicolor-icon-theme intltool-debian libaec0 libarchive-zip-perl libatk1.0-0
libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3
libblas3 libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran4 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b
libhdf5-100 libicu57 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1
libmpdec2 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1
libpixman-1-0 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal
libpython3.5-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal
libpython3.6-stdlib librsvg2-2 librsvg2-common libsigsegv2 libsz2
libthai-data libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1
libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2
libxrandr2 libxrender1 m4 man-db mime-support po-debconf python
python-alabaster python-babel python-babel-localedata python-certifi
python-chardet python-click python-cogent python-colorama
python-configparser python-cycler python-dateutil python-decorator
python-dev python-docutils python-functools32 python-future python-h5py
python-idna python-imagesize python-jinja2 python-markupsafe
python-matplotlib python-matplotlib-data python-minimal python-nose
python-numpy python-pkg-resources python-pygments python-pyparsing
python-requests python-roman python-scipy python-setuptools python-six
python-sphinx python-subprocess32 python-typing python-tz python-urllib3
python2.7 python2.7-dev python2.7-minimal python3 python3-all
python3-all-dev python3-click python3-colorama python3-decorator python3-dev
python3-future python3-h5py python3-minimal python3-nose python3-numpy
python3-pkg-resources python3-scipy python3-setuptools python3-six python3.5
python3.5-dev python3.5-minimal python3.6 python3.6-dev python3.6-minimal
sbuild-build-depends-python-biom-format-dummy sgml-base shared-mime-info
sphinx-common ttf-bitstream-vera ucf xml-core
The following packages will be upgraded:
cpp-7 g++-7 gcc-7 gcc-7-base libasan4 libatomic1 libcc1-0 libcilkrts5
libgcc-7-dev libgcc1 libgomp1 libstdc++-7-dev libstdc++6 libubsan0
14 upgraded, 193 newly installed, 0 to remove and 59 not upgraded.
Need to get 194 MB of archives.
After this operation, 229 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Mfo2Hb/apt_archive ./ sbuild-build-depends-python-biom-format-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf liblocale-gettext-perl armhf 1.07-3+b2 [18.3 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 7.2.0-11 [63.1 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.2.0-11 [182 kB]
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Get:18 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
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Get:20 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf bash-completion all 1:2.1-4.3 [178 kB]
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Get:30 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-2 [393 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-2 [1091 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-1 [40.7 kB]
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Get:34 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-2 [1854 kB]
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Get:36 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-1 [20.1 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-1 [155 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.3-1 [564 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.3-1 [1232 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.3-1 [35.6 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.3-1 [2055 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.3-1 [218 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.3-1 [19.0 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-python all 2.20170125 [86.8 kB]
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Get:47 http://172.17.0.1/private buster-staging/main armhf libpython3.5-minimal armhf 3.5.4-4 [572 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf python3.5-minimal armhf 3.5.4-4 [1431 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
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Get:52 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1+nmu1 [74.2 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.26.1-0.3+rpi1 [1748 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf cython3 armhf 0.26.1-0.3+rpi1 [2477 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.039-1 [18.2 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.039-1 [11.6 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.9.2 [979 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-1 [204 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf fonts-lyx all 2.2.3-2 [197 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf hicolor-icon-theme all 0.17-1 [11.5 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2 [110 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-5 [218 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf shared-mime-info armhf 1.9-2 [749 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-common all 2.36.11-1 [312 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.36.11-1 [153 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf gtk-update-icon-cache armhf 3.22.24-1+rpi1 [76.4 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.14.10-1 [692 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.26-3 [166 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.10-5 [33.0 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.26-3 [49.6 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.40.12-1 [179 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-6 [71.5 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.5.1-1 [661 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.40.12-1 [72.0 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.40.12-1 [61.2 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf librsvg2-2 armhf 2.40.18-2 [269 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf librsvg2-common armhf 2.40.18-2 [195 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf gnome-icon-theme all 3.12.0-2 [9890 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf help2man armhf 1.47.5 [162 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libaec0 armhf 0.3.2-2 [19.3 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libatk1.0-data all 2.26.0-2 [145 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libatk1.0-0 armhf 2.26.0-2 [42.3 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.7-3 [122 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.7-3 [50.6 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.7-3 [53.4 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-11 [191 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.5-2 [282 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.3-1 [120 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-common all 2.24.31-2 [2693 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libxcomposite1 armhf 1:0.4.4-2 [16.1 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libxcursor1 armhf 1:1.1.14-3 [31.8 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libxdamage1 armhf 1:1.1.4-3 [14.0 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libxinerama1 armhf 2:1.1.3-1+b3 [16.3 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libxrandr2 armhf 2:1.5.1-1 [34.5 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-0 armhf 2.24.31-2 [1505 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libsz2 armhf 0.3.2-2 [6080 B]
Get:135 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4 [1220 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.2.1-1 [154 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.6.5-1 [86.0 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.14-2 [904 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.14-2 [27.6 MB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.14-1 [20.1 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.3-1 [1228 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.3-1 [2252 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.6.3-1 [19.1 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libpython3.5-stdlib armhf 3.5.4-4 [2095 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libpython3.5 armhf 3.5.4-4 [1160 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libpython3.5-dev armhf 3.5.4-4 [37.1 MB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.6.3-1 [972 B]
Get:151 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.2.7-2 [169 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf python-tz all 2017.2-2 [33.9 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf python-babel all 2.4.0+dfsg.1-2 [84.3 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf python-certifi all 2017.4.17-2 [177 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf python-chardet all 3.0.4-1 [80.2 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf python-colorama all 0.3.7-1 [25.7 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf python-click all 6.7-1 [56.3 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf python-numpy armhf 1:1.13.1-1 [1727 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf python-six all 1.11.0-1 [14.9 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf python-dateutil all 2.6.1-1 [61.1 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf python-matplotlib-data all 2.0.0+dfsg1-2 [4414 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf python-pyparsing all 2.1.10+dfsg1-1 [88.5 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf python-cycler all 0.10.0-1 [7448 B]
Get:165 http://172.17.0.1/private buster-staging/main armhf python-functools32 all 3.2.3.2-3 [11.0 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf python-subprocess32 armhf 3.2.7-2 [28.2 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf python-matplotlib armhf 2.0.0+dfsg1-2+b1 [1530 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf python-cogent armhf 1.9-11+b1 [2436 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf python-configparser all 3.5.0-1 [60.4 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf python-decorator all 4.1.2-1 [13.7 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.14-2 [295 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.14-1 [1130 B]
Get:173 http://172.17.0.1/private buster-staging/main armhf python-roman all 2.0.0-2 [8130 B]
Get:174 http://172.17.0.1/private buster-staging/main armhf python-docutils all 0.14+dfsg-1 [379 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf python-future all 0.15.2-4 [347 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf python-h5py armhf 2.7.1-2 [552 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf python-idna all 2.5-1 [33.1 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf python-imagesize all 0.7.1-1 [3814 B]
Get:179 http://172.17.0.1/private buster-staging/main armhf python-markupsafe armhf 1.0-1+b1 [13.7 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf python-jinja2 all 2.9.6-1 [117 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf python-nose all 1.3.7-2 [132 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf python-pygments all 2.2.0+dfsg-1 [590 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf python-urllib3 all 1.21.1-1 [97.0 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf python-requests all 2.18.1-1 [76.5 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 36.2.7-2 [302 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf python-alabaster all 0.7.8-1 [18.4 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf python-typing all 3.6.2-1 [22.0 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.6.5-1 [420 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf python-sphinx all 1.6.5-1 [458 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf python3.5 armhf 3.5.4-4 [241 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.6.3-1 [946 B]
Get:192 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.3-1 [510 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.6.3-1 [1158 B]
Get:194 http://172.17.0.1/private buster-staging/main armhf python3.5-dev armhf 3.5.4-4 [429 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.6.3-1 [972 B]
Get:196 http://172.17.0.1/private buster-staging/main armhf python3-colorama all 0.3.7-1 [18.1 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf python3-click all 6.7-1 [56.4 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf python3-decorator all 4.1.2-1 [13.7 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf python3-future all 0.15.2-4 [346 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf python3-numpy armhf 1:1.13.1-1 [1885 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf python3-six all 1.11.0-1 [15.0 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf python3-h5py armhf 2.7.1-2 [765 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 36.2.7-2 [140 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf python3-nose all 1.3.7-2 [132 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 36.2.7-2 [220 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf python-scipy armhf 0.19.1-1 [8548 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf python3-scipy armhf 0.19.1-1 [9522 kB]
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Setting up libgssapi-krb5-2:armhf (1.15.1-2) ...
Setting up python-dateutil (2.6.1-1) ...
Setting up gtk-update-icon-cache (3.22.24-1+rpi1) ...
Setting up libxcursor1:armhf (1:1.1.14-3) ...
Setting up libpython3-all-dev:armhf (3.6.3-1) ...
Setting up libpango-1.0-0:armhf (1.40.12-1) ...
Setting up python-requests (2.18.1-1) ...
Setting up libxrandr2:armhf (2:1.5.1-1) ...
Setting up libcups2:armhf (2.2.5-2) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up libcairo2:armhf (1.14.10-1) ...
Setting up libxinerama1:armhf (2:1.1.3-1+b3) ...
Setting up libxdamage1:armhf (1:1.1.4-3) ...
Setting up libpangoft2-1.0-0:armhf (1.40.12-1) ...
Setting up libpangocairo-1.0-0:armhf (1.40.12-1) ...
Setting up librsvg2-2:armhf (2.40.18-2) ...
Setting up librsvg2-common:armhf (2.40.18-2) ...
Setting up gnome-icon-theme (3.12.0-2) ...
update-alternatives: using /usr/share/icons/gnome/scalable/places/debian-swirl.svg to provide /usr/share/icons/gnome/scalable/places/start-here.svg (start-here.svg) in auto mode
Setting up libgtk2.0-0:armhf (2.24.31-2) ...
Setting up python-matplotlib (2.0.0+dfsg1-2+b1) ...
Setting up python-cogent (1.9-11+b1) ...
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.14+dfsg-1) ...
Processing triggers for sgml-base (1.29) ...
Setting up python-docutils (0.14+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.6.5-1) ...
Setting up dh-autoreconf (14) ...
Setting up python3 (3.6.3-1) ...
Setting up python3-numpy (1:1.13.1-1) ...
Setting up python3-six (1.11.0-1) ...
Setting up python3-colorama (0.3.7-1) ...
Setting up python3-dev (3.6.3-1) ...
Setting up python3-pkg-resources (36.2.7-2) ...
Setting up dh-strip-nondeterminism (0.039-1) ...
Setting up python3-future (0.15.2-4) ...
Setting up python3-nose (1.3.7-2) ...
Setting up python3-all (3.6.3-1) ...
Setting up cython3 (0.26.1-0.3+rpi1) ...
Setting up python3-setuptools (36.2.7-2) ...
Setting up dh-python (2.20170125) ...
Setting up python3-decorator (4.1.2-1) ...
Setting up python3-h5py (2.7.1-2) ...
Setting up debhelper (10.9.2) ...
Setting up python3-scipy (0.19.1-1) ...
Setting up python3-all-dev (3.6.3-1) ...
Setting up python3-click (6.7-1) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
Processing triggers for libgdk-pixbuf2.0-0:armhf (2.36.11-1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-3+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-11 gcc-7_7.2.0-11 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-11 libstdc++6_7.2.0-11 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch
Package versions: adduser_3.116 apt_1.5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1+nmu1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 bash-completion_1:2.1-4.3 binutils_2.29.1-3+rpi1 binutils-arm-linux-gnueabihf_2.29.1-3+rpi1 binutils-common_2.29.1-3+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.29.2-5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-11 cython_0.26.1-0.3+rpi1 cython3_0.26.1-0.3+rpi1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.9.2 debianutils_4.8.2 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.039-1 diffutils_1:3.6-1 dirmngr_2.2.1-1 dmsetup_2:1.02.142-1 docutils-common_0.14+dfsg-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-5 file_1:5.32-1 findutils_4.6.0+git+20170729-2 fontconfig_2.12.3-0.2 fontconfig-config_2.12.3-0.2 fonts-lyx_2.2.3-2 g++_4:7.2.0-1d1 g++-7_7.2.0-11 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-11 gcc-7-base_7.2.0-11 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnome-icon-theme_3.12.0-2 gnupg_2.2.1-1 gnupg-agent_2.2.1-1 gnupg-l10n_2.2.1-1 gnupg-utils_2.2.1-1 gpg_2.2.1-1 gpg-agent_2.2.1-1 gpg-wks-client_2.2.1-1 gpg-wks-server_2.2.1-1 gpgconf_2.2.1-1 gpgsm_2.2.1-1 gpgv_2.2.1-1 grep_3.1-2 groff-base_1.22.3-9 gtk-update-icon-cache_3.22.24-1+rpi1 gzip_1.6-5 help2man_1.47.5 hicolor-icon-theme_0.17-1 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libaec0_0.3.2-2 libapparmor1_2.11.0-11 libapt-pkg5.0_1.5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-11 libassuan0_2.4.3-3 libatk1.0-0_2.26.0-2 libatk1.0-data_2.26.0-2 libatomic1_7.2.0-11 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libavahi-client3_0.7-3 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libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpango-1.0-0_1.40.12-1 libpangocairo-1.0-0_1.40.12-1 libpangoft2-1.0-0_1.40.12-1 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-8 libpipeline1_1.4.2-1 libpixman-1-0_0.34.0-1 libplymouth4_0.9.3-1 libpng16-16_1.6.32-3 libprocps6_2:3.3.12-3 libpython-dev_2.7.14-1 libpython-stdlib_2.7.14-1 libpython2.7_2.7.14-2 libpython2.7-dev_2.7.14-2 libpython2.7-minimal_2.7.14-2 libpython2.7-stdlib_2.7.14-2 libpython3-all-dev_3.6.3-1 libpython3-dev_3.6.3-1 libpython3-stdlib_3.6.3-1 libpython3.5_3.5.4-4 libpython3.5-dev_3.5.4-4 libpython3.5-minimal_3.5.4-4 libpython3.5-stdlib_3.5.4-4 libpython3.6_3.6.3-1 libpython3.6-dev_3.6.3-1 libpython3.6-minimal_3.6.3-1 libpython3.6-stdlib_3.6.3-1 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 librsvg2-2_2.40.18-2 librsvg2-common_2.40.18-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.29.2-5 libsqlite3-0_3.20.1-1 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-11 libstdc++6_7.2.0-11 libsystemd0_234-3 libsz2_0.3.2-2 libtasn1-6_4.12-2.1 libthai-data_0.1.26-3 libthai0_0.1.26-3 libtiff5_4.0.8-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-11 libudev1_234-3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-5 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1+b2 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.14-3 libxdamage1_1:1.1.4-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.3-1+b3 libxml2_2.9.4+dfsg1-5 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 linux-base_4.5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-5 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-8 perl-base_5.26.0-8 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-8 pinentry-curses_1.0.0-2 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.14-1 python-alabaster_0.7.8-1 python-babel_2.4.0+dfsg.1-2 python-babel-localedata_2.4.0+dfsg.1-2 python-certifi_2017.4.17-2 python-chardet_3.0.4-1 python-click_6.7-1 python-cogent_1.9-11+b1 python-colorama_0.3.7-1 python-configparser_3.5.0-1 python-cycler_0.10.0-1 python-dateutil_2.6.1-1 python-decorator_4.1.2-1 python-dev_2.7.14-1 python-docutils_0.14+dfsg-1 python-functools32_3.2.3.2-3 python-future_0.15.2-4 python-h5py_2.7.1-2 python-idna_2.5-1 python-imagesize_0.7.1-1 python-jinja2_2.9.6-1 python-markupsafe_1.0-1+b1 python-matplotlib_2.0.0+dfsg1-2+b1 python-matplotlib-data_2.0.0+dfsg1-2 python-minimal_2.7.14-1 python-nose_1.3.7-2 python-numpy_1:1.13.1-1 python-pkg-resources_36.2.7-2 python-pygments_2.2.0+dfsg-1 python-pyparsing_2.1.10+dfsg1-1 python-requests_2.18.1-1 python-roman_2.0.0-2 python-scipy_0.19.1-1 python-setuptools_36.2.7-2 python-six_1.11.0-1 python-sphinx_1.6.5-1 python-subprocess32_3.2.7-2 python-typing_3.6.2-1 python-tz_2017.2-2 python-urllib3_1.21.1-1 python2.7_2.7.14-2 python2.7-dev_2.7.14-2 python2.7-minimal_2.7.14-2 python3_3.6.3-1 python3-all_3.6.3-1 python3-all-dev_3.6.3-1 python3-click_6.7-1 python3-colorama_0.3.7-1 python3-decorator_4.1.2-1 python3-dev_3.6.3-1 python3-future_0.15.2-4 python3-h5py_2.7.1-2 python3-minimal_3.6.3-1 python3-nose_1.3.7-2 python3-numpy_1:1.13.1-1 python3-pkg-resources_36.2.7-2 python3-scipy_0.19.1-1 python3-setuptools_36.2.7-2 python3-six_1.11.0-1 python3.5_3.5.4-4 python3.5-dev_3.5.4-4 python3.5-minimal_3.5.4-4 python3.6_3.6.3-1 python3.6-dev_3.6.3-1 python3.6-minimal_3.6.3-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sgml-base_1.29 shared-mime-info_1.9-2 sphinx-common_1.6.5-1 systemd_234-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 ttf-bitstream-vera_1.10-8 tzdata_2017b-2 ucf_3.0036 udev_234-3 util-linux_2.29.2-5 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Jan 12 08:07:43 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.5+dfsg-7.dsc
dpkg-source: info: extracting python-biom-format in /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg
dpkg-source: info: unpacking python-biom-format_2.1.5+dfsg.orig.tar.gz
dpkg-source: info: unpacking python-biom-format_2.1.5+dfsg-7.debian.tar.xz
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying random_seed_for_test.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.1.5+dfsg-7+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-89f41a46-4032-466b-a52f-1a6f3bbd7a30
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.5+dfsg-7+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build python-biom-format-2.1.5+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean --test-nose -i python{version} -p 2.7
I: pybuild base:184: python2.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
pybuild --clean --test-nose -i python{version} -p "3.5 3.6"
I: pybuild base:184: python3.5 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
I: pybuild base:184: python3.6 setup.py clean
running clean
removing '/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.6' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python-biom-format.substvars debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars debian/biom-format-tools.substvars debian/files
rm -fr -- debian/python-biom-format/ debian/tmp/ debian/python3-biom-format/ debian/python-biom-format-doc/ debian/biom-format-tools/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch --with python2,python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p 2.7
I: pybuild base:184: python2.7 setup.py config
running config
pybuild --configure --test-nose -i python{version} -p "3.5 3.6"
I: pybuild base:184: python3.5 setup.py config
running config
I: pybuild base:184: python3.6 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build --test-nose -i python{version} -p 2.7
I: pybuild base:184: /usr/bin/python setup.py build
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
copying tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
copying tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
copying tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
copying tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
copying tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
copying tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/cli
running egg_info
creating biom_format.egg-info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_filter.c -o build/temp.linux-armhf-2.7/biom/_filter.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:498:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-LSpDd8/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_filter.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_transform.c -o build/temp.linux-armhf-2.7/biom/_transform.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:498:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-LSpDd8/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_transform.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_subsample.c -o build/temp.linux-armhf-2.7/biom/_subsample.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:498:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-LSpDd8/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_subsample.so
pybuild --build --test-nose -i python{version} -p "3.5 3.6"
I: pybuild base:184: /usr/bin/python3.5 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
copying tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
copying tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
copying tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
copying tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
copying tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
copying tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/cli
running egg_info
writing entry points to biom_format.egg-info/entry_points.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing biom_format.egg-info/PKG-INFO
writing requirements to biom_format.egg-info/requires.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.5
creating build/temp.linux-armhf-3.5/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c biom/_filter.c -o build/temp.linux-armhf-3.5/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:498:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.5/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/_filter.cpython-35m-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c biom/_transform.c -o build/temp.linux-armhf-3.5/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:498:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.5/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/_transform.cpython-35m-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c biom/_subsample.c -o build/temp.linux-armhf-3.5/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:498:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.5/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.5/build/biom/_subsample.cpython-35m-arm-linux-gnueabihf.so
I: pybuild base:184: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests
copying tests/test_parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests
copying tests/test_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests
copying tests/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests
copying tests/test_err.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests
copying tests/test_util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/err.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/exception.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/parse.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_validate_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_summarize_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_subset_table.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_add_metadata.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_show_install_info.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
copying tests/test_cli/test_table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/tests/test_cli
creating /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/installation_informer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/util.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/table_head.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/table_converter.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/uc_processor.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/__init__.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/table_validator.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/cli
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/_filter.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/_subsample.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/_subsample.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/_transform.c -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
copying biom/_transform.pyx -> /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.6
creating build/temp.linux-armhf-3.6/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.6m -c biom/_filter.c -o build/temp.linux-armhf-3.6/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:498:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/biom/_filter.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/_filter.cpython-36m-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.6m -c biom/_transform.c -o build/temp.linux-armhf-3.6/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:498:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/biom/_transform.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/_transform.cpython-36m-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.6m -c biom/_subsample.c -o build/temp.linux-armhf-3.6/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:498:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/biom/_subsample.o -o /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_3.6/build/biom/_subsample.cpython-36m-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v1.6.5
making output directory...
Generating grammar tables from /usr/share/sphinx/pycode/Grammar-py2.txt
WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead.
/usr/lib/python2.7/dist-packages/sphinx/util/compat.py:40: RemovedInSphinx17Warning: sphinx.util.compat.Directive is deprecated and will be removed in Sphinx 1.7, please use docutils' instead.
RemovedInSphinx17Warning)
loading pickled environment... not yet created
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom.table': no module named biom.table
Failed to import 'biom': no module named biom
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/quick_usage_examples.rst:1: WARNING: autodoc: failed to import module u'biom'; the following exception was raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 658, in import_object
__import__(self.modname)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/__init__.py", line 53, in <module>
from .table import Table
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/table_objects.rst:1: WARNING: autodoc: failed to import module u'biom.table'; the following exception was raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 658, in import_object
__import__(self.modname)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/__init__.py", line 53, in <module>
from .table import Table
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document u'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document u'documentation/table_objects' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document u'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/index.rst:11: WARNING: toctree contains reference to document u'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices...
writing additional pages... search
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 7 warnings.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v1.6.5
making output directory...
Generating grammar tables from /usr/share/sphinx/pycode/Grammar-py2.txt
WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead.
/usr/lib/python2.7/dist-packages/sphinx/util/compat.py:40: RemovedInSphinx17Warning: sphinx.util.compat.Directive is deprecated and will be removed in Sphinx 1.7, please use docutils' instead.
RemovedInSphinx17Warning)
loading pickled environment... not yet created
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom.table': no module named biom.table
Failed to import 'biom': no module named biom
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/quick_usage_examples.rst:1: WARNING: autodoc: failed to import module u'biom'; the following exception was raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 658, in import_object
__import__(self.modname)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/__init__.py", line 53, in <module>
from .table import Table
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/doc/documentation/table_objects.rst:1: WARNING: autodoc: failed to import module u'biom.table'; the following exception was raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 658, in import_object
__import__(self.modname)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/__init__.py", line 53, in <module>
from .table import Table
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE }
build succeeded, 3 warnings.
make[1]: Leaving directory '/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-nose -i python{version} -p 2.7
I: pybuild pybuild:219: cp -r /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/examples /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/tests /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build
I: pybuild base:184: cd /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose tests
EEEEEEEEEEEE
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_add_metadata.py", line 14, in <module>
import biom
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_show_install_info.py", line 11, in <module>
from biom.cli.installation_informer import _show_install_info
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_subset_table.py", line 14, in <module>
from biom.cli.table_subsetter import _subset_table
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_summarize_table.py", line 11, in <module>
from biom.cli.table_summarizer import _summarize_table
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_table_converter.py", line 16, in <module>
from biom.cli.table_converter import _convert
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_table_normalizer.py", line 15, in <module>
import biom
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_uc_processor.py", line 16, in <module>
import biom
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_validate_table.py", line 27, in <module>
from biom.cli.table_validator import TableValidator
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_err.py", line 14, in <module>
from biom import example_table, Table
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_parse.py", line 19, in <module>
from biom.parse import generatedby, MetadataMap, parse_biom_table, parse_uc
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_table.py", line 21, in <module>
from scipy.sparse import lil_matrix, csr_matrix, csc_matrix
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
======================================================================
ERROR: Failure: ImportError (/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_util.py", line 20, in <module>
from biom.table import Table
File "biom/__init__.py", line 53, in <module>
from .table import Table
File "biom/table.py", line 186, in <module>
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix, isspmatrix, vstack
File "/usr/lib/python2.7/dist-packages/scipy/__init__.py", line 114, in <module>
from scipy._lib._ccallback import LowLevelCallable
File "/usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback.py", line 1, in <module>
from . import _ccallback_c
ImportError: /usr/lib/python2.7/dist-packages/scipy/_lib/_ccallback_c.arm-linux-gnueabihf.so: undefined symbol: PyFPE_jbuf
----------------------------------------------------------------------
Ran 12 tests in 0.013s
FAILED (errors=12)
E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd /<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose tests
dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 returned exit code 13
debian/rules:18: recipe for target 'build-arch' failed
make: *** [build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 2017-10-29T12:31:49Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 115160
Build-Time: 99
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 694
Job: python-biom-format_2.1.5+dfsg-7
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 815
Source-Version: 2.1.5+dfsg-7
Space: 115160
Status: attempted
Version: 2.1.5+dfsg-7+b1
--------------------------------------------------------------------------------
Finished at 2017-10-29T12:31:49Z
Build needed 00:13:35, 115160k disk space