python-biom-format →
2.1.4+dfsg-1 →
armhf → 2015-11-02 06:44:28
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ python-biom-format 2.1.4+dfsg-1 (armhf) 02 Nov 2015 06:29 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: python-biom-format
Version: 2.1.4+dfsg-1
Source Version: 2.1.4+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/python-biom-format-fM7qqg/python-biom-format-2.1.4+dfsg' with '«PKGBUILDDIR»'
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I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-496fcda0-8ceb-49c4-af3d-2b17fd330c6b' with '«CHROOT»'
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NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/python-biom-format.git
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, dh-linktree, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-cogent, pyqi, python-future, python-nose, python-tox, python-sphinx, python-setuptools, bash-completion
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, dh-linktree, cython, python-dev, python-numpy, python-scipy, python-h5py, help2man, python-cogent, pyqi, python-future, python-nose, python-tox, python-sphinx, python-setuptools, bash-completion
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/«BUILDDIR»/resolver-Yp4h7a/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install python-biom-format build dependencies (apt-based resolver) │
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Installing build dependencies
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The following extra packages will be installed:
bash-completion bsdmainutils ca-certificates cython debhelper dh-linktree
dh-python dh-strip-nondeterminism docutils-common file fonts-font-awesome
fonts-lato gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libblas-common libblas3 libcroco3 libexpat1
libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgfortran3
libglib2.0-0 libhdf5-10 libicu55 libjs-jquery libjs-modernizr
libjs-sphinxdoc libjs-underscore liblapack3 libmagic1 libmpdec2 libpipeline1
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.4-minimal libpython3.4-stdlib libsqlite3-0 libssl1.0.0
libtimedate-perl libunistring0 libxml2 man-db mime-support openssl
po-debconf pyqi python python-alabaster python-babel python-babel-localedata
python-chardet-whl python-cogent python-colorama-whl python-decorator
python-dev python-distlib-whl python-docutils python-future python-h5py
python-html5lib-whl python-jinja2 python-markupsafe python-minimal
python-nose python-numpy python-pip-whl python-pkg-resources python-pygments
python-requests-whl python-roman python-scipy python-setuptools
python-setuptools-whl python-six python-six-whl python-sphinx
python-sphinx-rtd-theme python-tox python-tz python-urllib3-whl python2.7
python2.7-dev python2.7-minimal python3 python3-minimal
python3-pkg-resources python3-pluggy python3-py python3-setuptools
python3-virtualenv python3.4 python3.4-minimal sgml-base sphinx-common
sphinx-rtd-theme-common virtualenv xml-core
Suggested packages:
wamerican wordlist whois vacation cython-doc dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
python-doc python-tk python-cogent-doc texlive-latex-recommended
texlive-latex-base texlive-lang-french fonts-linuxlibertine
ttf-linux-libertine python-future-doc python-jinja2-doc python-coverage
python-nose-doc gfortran python-numpy-dbg python-numpy-doc
ttf-bitstream-vera python-scipy-doc python-setuptools-doc libjs-mathjax
dvipng texlive-latex-extra texlive-fonts-recommended python2.7-doc
binfmt-support python3-doc python3-tk python3-venv subversion python3-pytest
python3.4-venv python3.4-doc sgml-base-doc
Recommended packages:
curl wget lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
javascript-common libmail-sendmail-perl python-pil libpaper-utils
docutils-doc python-chardet python-imaging sphinx-doc
The following NEW packages will be installed:
bash-completion bsdmainutils ca-certificates cython debhelper dh-linktree
dh-python dh-strip-nondeterminism docutils-common file fonts-font-awesome
fonts-lato gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libblas-common libblas3 libcroco3 libexpat1
libexpat1-dev libffi6 libfile-stripnondeterminism-perl libgfortran3
libglib2.0-0 libhdf5-10 libicu55 libjs-jquery libjs-modernizr
libjs-sphinxdoc libjs-underscore liblapack3 libmagic1 libmpdec2 libpipeline1
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.4-minimal libpython3.4-stdlib libsqlite3-0 libssl1.0.0
libtimedate-perl libunistring0 libxml2 man-db mime-support openssl
po-debconf pyqi python python-alabaster python-babel python-babel-localedata
python-chardet-whl python-cogent python-colorama-whl python-decorator
python-dev python-distlib-whl python-docutils python-future python-h5py
python-html5lib-whl python-jinja2 python-markupsafe python-minimal
python-nose python-numpy python-pip-whl python-pkg-resources python-pygments
python-requests-whl python-roman python-scipy python-setuptools
python-setuptools-whl python-six python-six-whl python-sphinx
python-sphinx-rtd-theme python-tox python-tz python-urllib3-whl python2.7
python2.7-dev python2.7-minimal python3 python3-minimal
python3-pkg-resources python3-pluggy python3-py python3-setuptools
python3-virtualenv python3.4 python3.4-minimal
sbuild-build-depends-python-biom-format-dummy sgml-base sphinx-common
sphinx-rtd-theme-common virtualenv xml-core
0 upgraded, 108 newly installed, 0 to remove and 2 not upgraded.
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Setting up libfile-stripnondeterminism-perl (0.013-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up xml-core (0.13+nmu2) ...
Setting up fonts-font-awesome (4.4.0~dfsg-1) ...
Setting up help2man (1.47.2) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libgfortran3:armhf (5.2.1-22+rpi1) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libexpat1-dev:armhf (2.1.0-7) ...
Setting up libhdf5-10:armhf (1.8.15-patch1+docs-4) ...
Setting up libjs-jquery (1.11.3+dfsg-4) ...
Setting up libjs-underscore (1.7.0~dfsg-1) ...
Setting up libjs-sphinxdoc (1.3.1-7) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libpython2.7-dev:armhf (2.7.10-5) ...
Setting up libpython-dev:armhf (2.7.9-1) ...
Setting up sphinx-common (1.3.1-7) ...
Setting up pyqi (0.3.2+dfsg-1) ...
Setting up python-babel-localedata (1.3+dfsg.1-6) ...
Setting up python-pkg-resources (18.4-2) ...
Setting up python-six (1.10.0-1) ...
Setting up python-tz (2012c+dfsg-0.1) ...
Setting up python-babel (1.3+dfsg.1-6) ...
update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python-colorama-whl (0.3.3-1) ...
Setting up python-decorator (4.0.2-1) ...
Setting up python2.7-dev (2.7.10-5) ...
Setting up python-dev (2.7.9-1) ...
Setting up python-distlib-whl (0.2.1-1) ...
Setting up python-roman (2.0.0-2) ...
Setting up python-numpy (1:1.9.2-5) ...
Setting up python-h5py (2.5.0-1+b1) ...
Setting up python-html5lib-whl (0.999-3) ...
Setting up python-markupsafe (0.23-2) ...
Setting up python-jinja2 (2.8-1) ...
Setting up python-nose (1.3.6-1) ...
Setting up python-six-whl (1.10.0-1) ...
Setting up python-urllib3-whl (1.12-1) ...
Setting up python-requests-whl (2.7.0-3) ...
Setting up python-setuptools-whl (18.4-2) ...
Setting up python-pygments (2.0.1+dfsg-1.1) ...
Setting up python-setuptools (18.4-2) ...
Setting up libjs-modernizr (2.6.2+ds1-1) ...
Setting up sphinx-rtd-theme-common (0.1.9-1) ...
Setting up python-sphinx-rtd-theme (0.1.9-1) ...
Setting up python-cogent (1.5.3-2) ...
Setting up python-scipy (0.16.1-1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up docutils-common (0.12+dfsg-1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up python-docutils (0.12+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-alabaster (0.7.6-1) ...
Setting up python-sphinx (1.3.1-7) ...
Setting up python3 (3.4.3-7) ...
Setting up dh-strip-nondeterminism (0.013-1) ...
Setting up debhelper (9.20151005) ...
Setting up dh-linktree (0.4) ...
Setting up python3-pkg-resources (18.4-2) ...
Setting up python-chardet-whl (2.3.0-1) ...
Setting up python-pip-whl (1.5.6-7) ...
Setting up python3-pluggy (0.3.0-1) ...
Setting up python3-py (1.4.30-2) ...
Setting up python3-setuptools (18.4-2) ...
Setting up python3-virtualenv (1.11.6+ds-1) ...
Setting up virtualenv (1.11.6+ds-1) ...
Setting up python-tox (2.1.1-1) ...
Setting up dh-python (2.20150826) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-22) ...
Processing triggers for ca-certificates (20150426) ...
Updating certificates in /etc/ssl/certs...
180 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-7 dpkg-dev_1.18.3 g++-5_5.2.1-22+rpi1 gcc-5_5.2.1-22+rpi1 libc6-dev_2.19-22 libstdc++-5-dev_5.2.1-22+rpi1 libstdc++6_5.2.1-22+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 bash-completion_1:2.1-4.2 binutils_2.25.1-7 bsdmainutils_9.0.6 bsdutils_1:2.27-3 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20150426 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-5_5.2.1-22+rpi1 cython_0.23.2+git16-ga8fbae1-1 dash_0.5.7-4 debconf_1.5.57 debconf-i18n_1.5.57 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-linktree_0.4 dh-python_2.20150826 dh-strip-nondeterminism_0.013-1 diffutils_1:3.3-2 dmsetup_2:1.02.104-1 docutils-common_0.12+dfsg-1 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-9 fonts-font-awesome_4.4.0~dfsg-1 fonts-lato_2.0-1 g++_4:5.2.1-4+rpi2 g++-5_5.2.1-22+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1 gcc-4.9-base_4.9.3-5 gcc-5_5.2.1-22+rpi1 gcc-5-base_5.2.1-22+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-6 gpgv_1.4.19-6 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 help2man_1.47.2 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2 libapt-pkg4.16_1.0.10.2 libarchive-zip-perl_1.53-1 libasan2_5.2.1-22+rpi1 libatomic1_5.2.1-22+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libblas-common_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.27-3 libbz2-1.0_1.0.6-8 libc-bin_2.19-22 libc-dev-bin_2.19-22 libc6_2.19-22 libc6-dev_2.19-22 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-22+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.10.0-3 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.3 libdrm2_2.4.64-1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27-3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.013-1 libgc1c2_1:7.4.2-7 libgcc-5-dev_5.2.1-22+rpi1 libgcc1_1:5.2.1-22+rpi1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libgfortran3_5.2.1-22+rpi1 libglib2.0-0_2.46.1-1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgomp1_5.2.1-22+rpi1 libgpg-error0_1.20-1 libhdf5-10_1.8.15-patch1+docs-4 libicu55_55.1-5 libisl13_0.14-2 libjs-jquery_1.11.3+dfsg-4 libjs-modernizr_2.6.2+ds1-1 libjs-sphinxdoc_1.3.1-7 libjs-underscore_1.7.0~dfsg-1 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblapack3_3.5.0-4 liblocale-gettext-perl_1.07-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27-3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.2 libpipeline1_1.4.1-1 libplymouth4_0.9.2-2 libpng12-0_1.2.50-2+b2 libprocps4_2:3.3.10-2 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-5 libpython2.7-dev_2.7.10-5 libpython2.7-minimal_2.7.10-5 libpython2.7-stdlib_2.7.10-5 libpython3-stdlib_3.4.3-7 libpython3.4-minimal_3.4.3-10 libpython3.4-stdlib_3.4.3-10 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsmartcols1_2.27-3 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-5-dev_5.2.1-22+rpi1 libstdc++6_5.2.1-22+rpi1 libsystemd0_227-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libubsan0_5.2.1-22+rpi1 libudev1_227-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27-3 libxml2_2.9.2+zdfsg1-4 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.4-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27-3 mountall_2.54 multiarch-support_2.19-22 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 openssl_1.0.2d-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.2-2 po-debconf_1.0.18 procps_2:3.3.10-2 pyqi_0.3.2+dfsg-1 python_2.7.9-1 python-alabaster_0.7.6-1 python-babel_1.3+dfsg.1-6 python-babel-localedata_1.3+dfsg.1-6 python-chardet-whl_2.3.0-1 python-cogent_1.5.3-2 python-colorama-whl_0.3.3-1 python-decorator_4.0.2-1 python-dev_2.7.9-1 python-distlib-whl_0.2.1-1 python-docutils_0.12+dfsg-1 python-future_0.15.2-1 python-h5py_2.5.0-1+b1 python-html5lib-whl_0.999-3 python-jinja2_2.8-1 python-markupsafe_0.23-2 python-minimal_2.7.9-1 python-nose_1.3.6-1 python-numpy_1:1.9.2-5 python-pip-whl_1.5.6-7 python-pkg-resources_18.4-2 python-pygments_2.0.1+dfsg-1.1 python-requests-whl_2.7.0-3 python-roman_2.0.0-2 python-scipy_0.16.1-1 python-setuptools_18.4-2 python-setuptools-whl_18.4-2 python-six_1.10.0-1 python-six-whl_1.10.0-1 python-sphinx_1.3.1-7 python-sphinx-rtd-theme_0.1.9-1 python-tox_2.1.1-1 python-tz_2012c+dfsg-0.1 python-urllib3-whl_1.12-1 python2.7_2.7.10-5 python2.7-dev_2.7.10-5 python2.7-minimal_2.7.10-5 python3_3.4.3-7 python3-minimal_3.4.3-7 python3-pkg-resources_18.4-2 python3-pluggy_0.3.0-1 python3-py_1.4.30-2 python3-setuptools_18.4-2 python3-virtualenv_1.11.6+ds-1 python3.4_3.4.3-10 python3.4-minimal_3.4.3-10 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sphinx-common_1.3.1-7 sphinx-rtd-theme-common_0.1.9-1 startpar_0.59-3 systemd_227-2 systemd-sysv_227-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015g-1 udev_227-2 util-linux_2.27-3 virtualenv_1.11.6+ds-1 xml-core_0.13+nmu2 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Oct 27 17:48:18 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.4+dfsg-1.dsc
dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.4+dfsg
dpkg-source: info: unpacking python-biom-format_2.1.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.4+dfsg-1.debian.tar.xz
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-496fcda0-8ceb-49c4-af3d-2b17fd330c6b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package python-biom-format
dpkg-buildpackage: source version 2.1.4+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build python-biom-format-2.1.4+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=pybuild --with linktree
dh_testdir -O--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
rm -rf build/tests
dh_auto_clean
I: pybuild base:170: python2.7 setup.py clean
running clean
removing '/«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find -name "._*" -delete #Remove any Mac metadata files
make --directory=doc clean
make[2]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc'
rm -rf _build/* documentation/generated
make[2]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc'
rm -f debian/bash-completion
rm -f python-code/support-code/_*.cpp
make[1]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python2 --buildsystem=pybuild --with linktree
dh_testdir -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:170: python2.7 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
USE_CYTHON=true dh_auto_build
I: pybuild base:170: /usr/bin/python setup.py build
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running build
running build_py
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/err.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/exception.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/parse.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/util.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom
copying biom/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/installation_informer.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/metadata_adder.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_converter.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_normalizer.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_subsetter.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_summarizer.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
copying biom/commands/table_validator.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces
copying biom/interfaces/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
copying biom/interfaces/optparse/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
copying biom/interfaces/optparse/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
copying biom/interfaces/optparse/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/normalize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/subset_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
copying biom/interfaces/optparse/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
copying biom/interfaces/html/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
copying biom/interfaces/html/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
copying biom/interfaces/html/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/normalize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
copying biom/interfaces/html/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/biom
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_filter.c -o build/temp.linux-armv7l-2.7/biom/_filter.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:250:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:250:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from biom/_filter.c:251:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/biom/_filter.o -o /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_filter.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_transform.c -o build/temp.linux-armv7l-2.7/biom/_transform.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:250:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:250:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from biom/_transform.c:251:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/biom/_transform.o -o /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_transform.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c biom/_subsample.c -o build/temp.linux-armv7l-2.7/biom/_subsample.o
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:250:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:250:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from biom/_subsample.c:251:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/biom/_subsample.o -o /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_subsample.so
running build_scripts
creating build/scripts-2.7
copying scripts/biom -> build/scripts-2.7
copying scripts/serve-biom -> build/scripts-2.7
changing mode of build/scripts-2.7/serve-biom from 644 to 755
DEB_BUILD_OPTIONS= pybuild -s custom -p 2.7 --test --test-args 'make --directory=doc singlehtml'
I: pybuild base:170: make --directory=doc singlehtml
make[2]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc'
sphinx-build -b singlehtml -d _build/doctrees . _build/singlehtml
Running Sphinx v1.3.1
making output directory...
loading pickled environment... not yet created
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
[autosummary] generating autosummary for: /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.load_table.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.rst
[autosummary] generating autosummary for: /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__eq__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__format__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__getitem__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__init__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__iter__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__ne__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__new__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__reduce__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__reduce_ex__.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.__repr__.rst, ..., /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.sort.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.sort_order.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.subsample.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.sum.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.to_hdf5.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.to_json.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.to_tsv.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.transform.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.transpose.rst, /«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.table.Table.update_ids.rst
building [mo]: targets for 0 po files that are out of date
building [singlehtml]: all documents
updating environment: 90 added, 0 changed, 0 removed
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/«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc/documentation/generated/biom.load_table.rst:: WARNING: document isn't included in any toctree
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assembling single document... documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/generated/biom.table.Table documentation/generated/biom.table.Table.dtype documentation/generated/biom.table.Table.matrix_data documentation/generated/biom.table.Table.nnz documentation/generated/biom.table.Table.shape documentation/generated/biom.table.Table.__getitem__ documentation/generated/biom.table.Table._extract_data_from_tsv documentation/generated/biom.table.Table.add_group_metadata documentation/generated/biom.table.Table.add_metadata documentation/generated/biom.table.Table.collapse documentation/generated/biom.table.Table.copy documentation/generated/biom.table.Table.data documentation/generated/biom.table.Table.delimited_self documentation/generated/biom.table.Table.descriptive_equality documentation/generated/biom.table.Table.exists documentation/generated/biom.table.Table.filter documentation/generated/biom.table.Table.from_hdf5 documentation/generated/biom.table.Table.from_json documentation/generated/biom.table.Table.from_tsv documentation/generated/biom.table.Table.get_table_density documentation/generated/biom.table.Table.get_value_by_ids documentation/generated/biom.table.Table.group_metadata documentation/generated/biom.table.Table.ids documentation/generated/biom.table.Table.index documentation/generated/biom.table.Table.is_empty documentation/generated/biom.table.Table.iter documentation/generated/biom.table.Table.iter_data documentation/generated/biom.table.Table.iter_pairwise documentation/generated/biom.table.Table.length documentation/generated/biom.table.Table.max documentation/generated/biom.table.Table.merge documentation/generated/biom.table.Table.metadata documentation/generated/biom.table.Table.min documentation/generated/biom.table.Table.nonzero documentation/generated/biom.table.Table.nonzero_counts documentation/generated/biom.table.Table.norm documentation/generated/biom.table.Table.pa documentation/generated/biom.table.Table.partition documentation/generated/biom.table.Table.reduce documentation/generated/biom.table.Table.sort documentation/generated/biom.table.Table.sort_order documentation/generated/biom.table.Table.subsample documentation/generated/biom.table.Table.sum documentation/generated/biom.table.Table.to_hdf5 documentation/generated/biom.table.Table.to_json documentation/generated/biom.table.Table.to_tsv documentation/generated/biom.table.Table.transform documentation/generated/biom.table.Table.transpose documentation/generated/biom.table.Table.update_ids documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE
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build succeeded, 1 warning.
Build finished. The HTML page is in _build/singlehtml.
make[2]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc'
DEB_BUILD_OPTIONS= pybuild -s custom -p 2.7 --test --test-args 'pyqi make-bash-completion \
--command-config-module biom.interfaces.optparse.config \
--driver-name biom -o debian/bash-completion'
I: pybuild base:170: pyqi make-bash-completion \
--command-config-module biom.interfaces.optparse.config \
--driver-name biom -o debian/bash-completion
make[1]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:170: cd /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose
----------------------------------------------------------------------
Ran 0 tests in 0.532s
OK
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=pybuild --with linktree
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:170: /usr/bin/python setup.py install --root /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/err.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/exception.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/parse.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/util.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/installation_informer.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/metadata_adder.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_converter.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_normalizer.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_subsetter.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_summarizer.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_validator.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/metadata_adder.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_converter.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_normalizer.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/installation_informer.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_subsetter.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_summarizer.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/commands/table_validator.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/commands
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/normalize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/subset_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/add_metadata.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/convert.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/normalize_table.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/show_install_info.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/subset_table.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/summarize_table.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/config/validate_table.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/input_handler.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/optparse/output_handler.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/optparse
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/input_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/output_handler.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/__init__.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/add_metadata.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/convert.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/normalize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/show_install_info.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/summarize_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/validate_table.py -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/config/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/html/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/interfaces/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_filter.so -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_transform.so -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/_subsample.so -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/__init__.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/table.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/exception.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/util.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/err.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying /«BUILDDIR»/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/biom/parse.pyc -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/input_handler.py to input_handler.pyc
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/output_handler.py to output_handler.pyc
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config/add_metadata.py to add_metadata.pyc
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config/convert.py to convert.pyc
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config/normalize_table.py to normalize_table.pyc
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config/show_install_info.py to show_install_info.pyc
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config/summarize_table.py to summarize_table.pyc
byte-compiling /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/interfaces/html/config/validate_table.py to validate_table.pyc
running install_egg_info
running egg_info
creating biom_format.egg-info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
Copying biom_format.egg-info to /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom_format-2.1.4.egg-info
Skipping SOURCES.txt
running install_scripts
creating /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/bin
copying build/scripts-2.7/biom -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/bin
copying build/scripts-2.7/serve-biom -> /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/bin
changing mode of /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/bin/biom to 755
changing mode of /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/bin/serve-biom to 755
debian/rules override_dh_install
make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
dh_install
dh_bash-completion
dh_bash-completion: file-list parsing failed, installing as proper snippet
# All *.py scripts simply say
# "This script no longer exists. ..."
rm -f /«BUILDDIR»/python-biom-format-2.1.4+dfsg/debian/python-biom-format/usr/bin/*.py
make[1]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
debian/rules override_dh_installman
make[1]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
DEB_BUILD_OPTIONS= pybuild -s custom -p 2.7 --test --test-args 'make --directory=doc man'
I: pybuild base:170: make --directory=doc man
make[2]: Entering directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc'
sphinx-build -b man -d _build/doctrees . _build/man
Running Sphinx v1.3.1
making output directory...
loading pickled environment... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/generated/biom.table.Table documentation/generated/biom.table.Table.dtype documentation/generated/biom.table.Table.matrix_data documentation/generated/biom.table.Table.nnz documentation/generated/biom.table.Table.shape documentation/generated/biom.table.Table.__getitem__ documentation/generated/biom.table.Table._extract_data_from_tsv documentation/generated/biom.table.Table.add_group_metadata documentation/generated/biom.table.Table.add_metadata documentation/generated/biom.table.Table.collapse documentation/generated/biom.table.Table.copy documentation/generated/biom.table.Table.data documentation/generated/biom.table.Table.delimited_self documentation/generated/biom.table.Table.descriptive_equality documentation/generated/biom.table.Table.exists documentation/generated/biom.table.Table.filter documentation/generated/biom.table.Table.from_hdf5 documentation/generated/biom.table.Table.from_json documentation/generated/biom.table.Table.from_tsv documentation/generated/biom.table.Table.get_table_density documentation/generated/biom.table.Table.get_value_by_ids documentation/generated/biom.table.Table.group_metadata documentation/generated/biom.table.Table.ids documentation/generated/biom.table.Table.index documentation/generated/biom.table.Table.is_empty documentation/generated/biom.table.Table.iter documentation/generated/biom.table.Table.iter_data documentation/generated/biom.table.Table.iter_pairwise documentation/generated/biom.table.Table.length documentation/generated/biom.table.Table.max documentation/generated/biom.table.Table.merge documentation/generated/biom.table.Table.metadata documentation/generated/biom.table.Table.min documentation/generated/biom.table.Table.nonzero documentation/generated/biom.table.Table.nonzero_counts documentation/generated/biom.table.Table.norm documentation/generated/biom.table.Table.pa documentation/generated/biom.table.Table.partition documentation/generated/biom.table.Table.reduce documentation/generated/biom.table.Table.sort documentation/generated/biom.table.Table.sort_order documentation/generated/biom.table.Table.subsample documentation/generated/biom.table.Table.sum documentation/generated/biom.table.Table.to_hdf5 documentation/generated/biom.table.Table.to_json documentation/generated/biom.table.Table.to_tsv documentation/generated/biom.table.Table.transform documentation/generated/biom.table.Table.transpose documentation/generated/biom.table.Table.update_ids documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE }
build succeeded.
Build finished. The manual pages are in _build/man.
make[2]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg/doc'
dh_installman
make[1]: Leaving directory '/«BUILDDIR»/python-biom-format-2.1.4+dfsg'
dh_python2 -a -O--buildsystem=pybuild
I: dh_python2 fs:316: renaming _filter.so to _filter.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming _subsample.so to _subsample.arm-linux-gnueabihf.so
I: dh_python2 fs:316: renaming _transform.so to _transform.arm-linux-gnueabihf.so
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dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-biom-format: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-biom-format: unused substitution variable ${python:Versions}
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python-biom-format' in '../python-biom-format_2.1.4+dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-biom-format_2.1.4+dfsg-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build python-biom-format-2.1.4+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151102-0644
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
python-biom-format_2.1.4+dfsg-1_armhf.changes:
──────────────────────────────────────────────
Format: 1.8
Date: Tue, 27 Oct 2015 18:46:33 +0100
Source: python-biom-format
Binary: python-biom-format
Architecture: armhf
Version: 2.1.4+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
python-biom-format - Biological Observation Matrix (BIOM) format
Closes: 802867
Changes:
python-biom-format (2.1.4+dfsg-1) unstable; urgency=medium
.
* New upstream version
Closes: #802867
* Moved from SVN to Git
* cme fix dpkg-control
* Fix watch file
Checksums-Sha1:
4ed8a9e961c1fde2efdda89e42e9e80cd33c7d40 199516 python-biom-format_2.1.4+dfsg-1_armhf.deb
Checksums-Sha256:
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Files:
99325584e38ffd86a8901395fa267f67 199516 python optional python-biom-format_2.1.4+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
python-biom-format_2.1.4+dfsg-1_armhf.deb
─────────────────────────────────────────
new debian package, version 2.0.
size 199516 bytes: control archive=3580 bytes.
1643 bytes, 29 lines control
7830 bytes, 81 lines md5sums
166 bytes, 9 lines * postinst #!/bin/sh
271 bytes, 14 lines * prerm #!/bin/sh
Package: python-biom-format
Version: 2.1.4+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 881
Depends: pyqi, python (<< 2.8), python (>= 2.7~), python-numpy, python-scipy, python:any (>= 2.7.5-5~), sphinx-common (>= 1.3.1), libc6 (>= 2.4), python-cogent, python-h5py
Section: python
Priority: optional
Homepage: http://biom-format.org/
Description: Biological Observation Matrix (BIOM) format
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
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Build Architecture: armhf
Build-Space: 58852
Build-Time: 172
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 680
Job: python-biom-format_2.1.4+dfsg-1
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 917
Source-Version: 2.1.4+dfsg-1
Space: 58852
Status: successful
Version: 2.1.4+dfsg-1
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Finished at 20151102-0644
Build needed 00:15:17, 58852k disc space