python-biom-format →
2.1.12-1 →
armhf → 2022-08-12 11:14:43
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| python-biom-format 2.1.12-1 (armhf) Fri, 12 Aug 2022 10:33:31 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.12-1
Source Version: 2.1.12-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-bcbf8283-15a4-4cfd-878d-20235a1c375e' with '<<CHROOT>>'
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Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.2 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
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W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
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| Fetch source files |
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Check APT
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Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8567 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.12-1 (dsc) [2458 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.12-1 (tar) [8554 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.12-1 (diff) [10.8 kB]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-m3pHh3/python-biom-format-2.1.12' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-m3pHh3' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
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Merged Build-Depends: build-essential, fakeroot
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dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-wsGxfy/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
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gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
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gpg: unchanged: 1
gpg: secret keys read: 1
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gpg: using "Sbuild Signer" as default secret key for signing
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W: GPG error: copy:/<<BUILDDIR>>/resolver-wsGxfy/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
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Installing build dependencies
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Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12788 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
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| Check architectures |
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Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
Filtered Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-wsGxfy/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wsGxfy/apt_archive ./ InRelease
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Reading package lists...
W: copy:/<<BUILDDIR>>/resolver-wsGxfy/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-wsGxfy/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gettext gettext-base groff-base help2man
intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0
libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1
libhdf5-hl-100 libicu71 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata
libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
liblcms2-2 liblerc4 liblocale-gettext-perl liblzf1 libmagic-mgc libmagic1
libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1
libsigsegv2 libssh2-1 libsub-override-perl libsz2 libtcl8.6 libtiff5
libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 m4 man-db media-types openssl po-debconf
python-babel-localedata python-matplotlib-data python3 python3-alabaster
python3-all python3-all-dev python3-appdirs python3-attr python3-babel
python3-brotli python3-certifi python3-chardet python3-charset-normalizer
python3-click python3-colorama python3-cov-core python3-coverage
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-docutils python3-fonttools python3-fs
python3-future python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-nose python3-nose2 python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-py python3-pygments
python3-pyparsing python3-pytest python3-pytest-cov python3-requests
python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk
python3-tomli python3-tz python3-ufolib2 python3-unicodedata2
python3-urllib3 python3-zipp python3.10 python3.10-dev python3.10-minimal
python3.9 python3.9-minimal sphinx-common tk8.6-blt2.5 ucf unicode-data
x11-common xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-venv python-attr-doc
python-coverage-doc python-cycler-doc docutils-doc fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended python-future-doc python-h5py-doc
python-jinja2-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo
python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
python-nose-doc python-nose2-doc gfortran python-numpy-doc python-pandas-doc
python3-statsmodels python-pil-doc subversion python-pygments-doc
ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl
python3-socks python-requests-doc python-scipy-doc python-setuptools-doc
python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax
python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended
texlive-plain-generic texlive-fonts-extra python-sympy-doc tix
python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.9-venv
python3.9-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libjson-xs-perl publicsuffix libltdl-dev
libmail-sendmail-perl libpaper-utils python3-bs4 python3-html5lib
python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt
python3-tables python3-olefile isympy-common
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gettext gettext-base groff-base help2man
intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0
libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1
libhdf5-hl-100 libicu71 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata
libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-jquery-ui
libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
liblcms2-2 liblerc4 liblocale-gettext-perl liblzf1 libmagic-mgc libmagic1
libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1
libsigsegv2 libssh2-1 libsub-override-perl libsz2 libtcl8.6 libtiff5
libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1
libxslt1.1 libxss1 m4 man-db media-types openssl po-debconf
python-babel-localedata python-matplotlib-data python3 python3-alabaster
python3-all python3-all-dev python3-appdirs python3-attr python3-babel
python3-brotli python3-certifi python3-chardet python3-charset-normalizer
python3-click python3-colorama python3-cov-core python3-coverage
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-docutils python3-fonttools python3-fs
python3-future python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-nose python3-nose2 python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-py python3-pygments
python3-pyparsing python3-pytest python3-pytest-cov python3-requests
python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk
python3-tomli python3-tz python3-ufolib2 python3-unicodedata2
python3-urllib3 python3-zipp python3.10 python3.10-dev python3.10-minimal
python3.9 python3.9-minimal sbuild-build-depends-python-biom-format-dummy
sphinx-common tk8.6-blt2.5 ucf unicode-data x11-common xml-core zlib1g-dev
0 upgraded, 199 newly installed, 0 to remove and 0 not upgraded.
Need to get 115 MB of archives.
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Get:2 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b2 [18.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
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Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.13-1+rpi1 [798 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.13-1+rpi1 [1597 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-1 [33.7 kB]
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Get:27 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
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Get:32 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
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Get:34 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
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Get:40 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
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Get:50 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.30-1 [1585 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.8 [195 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.8 [1070 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.5-2 [80.9 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.5-2 [147 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6.1-1 [206 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.48.0-1 [72.1 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.84.0-2 [321 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-7+rpi1 [238 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.3-1 [1233 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1+b1 [1240 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1+b1 [82.4 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-metadata all 12-3 [7660 B]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.3~dfsg+~1.11.4-1 [116 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libjson-perl all 4.09000-1 [90.5 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-1 [121 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.5-1+b1 [1456 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4+b2 [183 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.5-1+b1 [2987 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.5-3 [22.0 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.5-3 [1068 B]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.13-1+rpi1 [1611 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2 [97.1 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2 [105 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.2-2 [2741 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.5-3 [1064 B]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.5-1+b1 [508 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.5-3 [25.4 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.5-3 [1068 B]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-2 [12.9 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.1.0-1 [64.1 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.1-1 [34.8 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.8.0+dfsg.1-7 [100 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-2 [99.1 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.5-1 [29.3 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-4 [6160 B]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.0.3-1 [91.9 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.13-1+rpi1 [496 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-coverage armhf 6.2+dfsg1-2+b1 [152 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-nose2 all 0.12.0-1 [107 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-cov-core all 1.15.0-4 [7672 B]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-1 [10.7 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-7 [12.9 MB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.10.1-3 [4317 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.16-1 [96.6 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.9.1-1 [959 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.0+dfsg-1 [24.0 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds-8 [296 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 14.0.0-1.1 [7868 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.34.4-1 [814 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-6 [348 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.7.0-2 [712 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.7.0-2 [13.3 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.4.1-1 [6688 B]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.0.1-2+b1 [13.5 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-1 [121 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1+b1 [52.1 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.2.0-1 [430 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.10.5-2 [110 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.2.0-1 [78.5 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-2 [140 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.2-2 [6495 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-nose all 1.3.7-8 [133 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-5 [5080 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-5 [2654 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.12.0+dfsg-2 [765 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-1 [18.1 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.1.2-2 [223 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-cov all 3.0.0-1 [25.7 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.9-1 [116 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.27.1+dfsg-1 [71.9 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-1 [58.5 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 4.5.0-4 [638 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 4.5.0-4 [540 kB]
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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127 added, 0 removed; done.
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-numpy (1:1.21.5-1+b1) ...
Setting up python3-future (0.18.2-6) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-all-dev (3.10.5-3) ...
Setting up python3-scipy (1.8.1-7) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
Setting up python3-cov-core (1.15.0-4) ...
Setting up python3-pytest (7.1.2-2) ...
Setting up python3-pandas-lib:armhf (1.3.5+dfsg-5) ...
Setting up python3-h5py-serial (3.7.0-2) ...
Setting up python3-pytest-cov (3.0.0-1) ...
Setting up python3-pandas (1.3.5+dfsg-5) ...
Setting up python3-h5py (3.7.0-2) ...
Setting up python3-fonttools (4.34.4-1) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Processing triggers for sgml-base (1.30) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
Setting up libxft2:armhf (2.3.4-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Processing triggers for libc-bin (2.33-8+rpi1) ...
Setting up docutils-common (0.17.1+dfsg-2) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.10.5-2) ...
Setting up python3-pil.imagetk:armhf (9.2.0-1) ...
Setting up python3-pil:armhf (9.2.0-1) ...
Setting up python3-matplotlib (3.5.2-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.17.1+dfsg-2) ...
Setting up python3-sphinx (4.5.0-4) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.33-8+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.1.0-7+rpi1 gcc-12_12.1.0-7+rpi1 libc6-dev_2.33-8+rpi1 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 linux-libc-dev_5.18.14-1+rpi1
Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6.1 bash-completion_1:2.11-6 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.1.0-7+rpi1 cython3_0.29.30-1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.8 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.35-3 docutils-common_0.17.1+dfsg-2 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6.1-1 g++_4:12.1.0-3+rpi1 g++-12_12.1.0-7+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.1.0-7+rpi1 gcc-12-base_12.1.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.35-3 gnupg-l10n_2.2.35-3 gnupg-utils_2.2.35-3 gpg_2.2.35-3 gpg-agent_2.2.35-3 gpg-wks-client_2.2.35-3 gpg-wks-server_2.2.35-3 gpgconf_2.2.35-3 gpgsm_2.2.35-3 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 libacl1_2.3.1-1 libaec0_1.0.6-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libasan8_12.1.0-7+rpi1 libassuan0_2.5.5-4 libatomic1_12.1.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2+rpi1 libblas3_3.10.1-2 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.33-8+rpi1 libc-dev-bin_2.33-8+rpi1 libc6_2.33-8+rpi1 libc6-dev_2.33-8+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-7+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libcurl4_7.84.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.8 libdeflate0_1.12-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.4 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.1.0-7+rpi1 libgcc-s1_12.1.0-7+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12.1.0-7+rpi1 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.1.0-7+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_2.7.4-1+b1 libhdf5-103-1_1.10.7+repack-4+rpi1+b1 libhdf5-hl-100_1.10.7+repack-4+rpi1+b1 libhogweed6_3.7.3-1 libicu71_71.1-3 libidn2-0_2.3.3-1 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libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 libsub-override-perl_0.09-3 libsystemd0_251.3-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libtiff5_4.4.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2.1 libtirpc-dev_1.3.2-2.1 libtirpc3_1.3.2-2.1 libtk8.6_8.6.12-1 libtool_2.4.7-4 libubsan1_12.1.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libwebp7_1.2.2-2 libwebpdemux2_1.2.2-2 libwebpmux3_1.2.2-2 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.4-1 libxml2_2.9.14+dfsg-1 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.4-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python-babel-localedata_2.8.0+dfsg.1-7 python-matplotlib-data_3.5.2-2 python3_3.10.5-3 python3-alabaster_0.7.12-1 python3-all_3.10.5-3 python3-all-dev_3.10.5-3 python3-appdirs_1.4.4-2 python3-attr_22.1.0-1 python3-babel_2.8.0+dfsg.1-7 python3-brotli_1.0.9-2+b2 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-2 python3-charset-normalizer_2.0.6-2 python3-click_8.0.3-1 python3-colorama_0.4.5-1 python3-cov-core_1.15.0-4 python3-coverage_6.2+dfsg1-2+b1 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.10.5-3 python3-distutils_3.10.5-2 python3-docutils_0.17.1+dfsg-2 python3-fonttools_4.34.4-1 python3-fs_2.4.16-1 python3-future_0.18.2-6 python3-h5py_3.7.0-2 python3-h5py-serial_3.7.0-2 python3-idna_3.3-1 python3-imagesize_1.4.1-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-2 python3-jinja2_3.0.3-1 python3-kiwisolver_1.3.2-1+b1 python3-lib2to3_3.10.5-2 python3-lxml_4.9.1-1 python3-lz4_4.0.0+dfsg-1 python3-markupsafe_2.0.1-2+b1 python3-matplotlib_3.5.2-2 python3-minimal_3.10.5-3 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-nose_1.3.7-8 python3-nose2_0.12.0-1 python3-numpy_1:1.21.5-1+b1 python3-packaging_21.3-1 python3-pandas_1.3.5+dfsg-5 python3-pandas-lib_1.3.5+dfsg-5 python3-pil_9.2.0-1 python3-pil.imagetk_9.2.0-1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0+repack-1 python3-py_1.10.0-1 python3-pygments_2.12.0+dfsg-2 python3-pyparsing_3.0.7-2 python3-pytest_7.1.2-2 python3-pytest-cov_3.0.0-1 python3-requests_2.27.1+dfsg-1 python3-roman_3.3-1 python3-scipy_1.8.1-7 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-4 python3-snowballstemmer_2.2.0-1 python3-sphinx_4.5.0-4 python3-sympy_1.10.1-3 python3-tk_3.10.5-2 python3-tomli_2.0.1-1 python3-tz_2022.1-1 python3-ufolib2_0.13.1+dfsg1-1 python3-unicodedata2_14.0.0+ds-8 python3-urllib3_1.26.9-1 python3-zipp_1.0.0-4 python3.10_3.10.5-1+b1 python3.10-dev_3.10.5-1+b1 python3.10-minimal_3.10.5-1+b1 python3.9_3.9.13-1+rpi1 python3.9-minimal_3.9.13-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_4.5.0-4 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2022a-1 ucf_3.0043 unicode-data_14.0.0-1.1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 x11-common_1:7.7+23 xml-core_0.18+nmu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4+b2 zlib1g-dev_1:1.2.11.dfsg-4+b2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.jChBycXG/trustedkeys.kbx': General error
gpgv: Signature made Sun Jun 26 12:31:42 2022 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-biom-format_2.1.12-1.dsc
dpkg-source: info: extracting python-biom-format in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-biom-format_2.1.12.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.12-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-bcbf8283-15a4-4cfd-878d-20235a1c375e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.12-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --clean -i python{version} -p 3.10
I: pybuild base:239: python3.10 setup.py clean
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --configure -i python{version} -p 3.10
I: pybuild base:239: python3.10 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build -i python{version} -p 3.10
I: pybuild base:239: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_filter.c -o build/temp.linux-armhf-3.10/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:720:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.cpython-310-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_transform.c -o build/temp.linux-armhf-3.10/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:720:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.cpython-310-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_subsample.c -o build/temp.linux-armhf-3.10/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:720:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.table.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
Failed to import biom.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices... done
writing additional pages... search done
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.table.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
Failed to import biom.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p 3.10
I: pybuild pybuild:300: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build; python3.10 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.10.5, pytest-7.1.2, pluggy-1.0.0+repack
rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
plugins: cov-3.0.0
collected 366 items
biom/tests/test_err.py ..................... [ 5%]
biom/tests/test_parse.py .......................... [ 12%]
biom/tests/test_table.py ............................................... [ 25%]
..sss................................................................... [ 45%]
....sss................................................................. [ 65%]
.............................................................. [ 81%]
biom/tests/test_util.py ..s................ [ 87%]
biom/tests/test_cli/test_add_metadata.py .... [ 88%]
biom/tests/test_cli/test_show_install_info.py . [ 88%]
biom/tests/test_cli/test_subset_table.py ..... [ 89%]
biom/tests/test_cli/test_summarize_table.py .. [ 90%]
biom/tests/test_cli/test_table_converter.py ...... [ 92%]
biom/tests/test_cli/test_table_normalizer.py . [ 92%]
biom/tests/test_cli/test_uc_processor.py ...... [ 93%]
biom/tests/test_cli/test_validate_table.py ...................... [100%]
=============================== warnings summary ===============================
biom/tests/test_table.py:19
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py:19: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead.
import pandas.util.testing as pdt
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:146: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py:4196: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
data = np.hstack(h5_data[start:end]
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py:4198: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
indices = np.hstack(h5_indices[start:end]
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:103: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_intXint(row, col, x.flat[0])
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:88: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num samples: ' + locale.format('%d', num_samples,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:90: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num observations: ' + locale.format('%d',
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:95: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Total count: ' + locale.format('%d', total_count,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:110: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True))
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True))
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Median: ' + locale.format('%1.3f', median_counts,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:114: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Mean: ' + locale.format('%1.3f', mean_counts,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:116: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Std. dev.: ' + locale.format('%1.3f',
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:143: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True))
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 359 passed, 7 skipped, 46 warnings in 59.78s =================
rm -fr -- /tmp/dh-xdg-rundir-6bNUzyyY
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-biom-format.substvars
rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
install -d /<<PKGBUILDDIR>>/debian/tmp
pybuild --install -i python{version} -p 3.10 --dest-dir /<<PKGBUILDDIR>>/debian/tmp
I: pybuild base:239: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-biom-format
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/exception.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_err.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_parse.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/long_lines.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_table.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_util.cpython-310-pytest-7.1.2.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_head.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/util.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_converter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_head.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_ids.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_validator.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/table.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/exception.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/util.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/err.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/parse.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/rich_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/obs_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/sam_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/min_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/util.py to util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/err.py to err.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/table.py to table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/exception.py to exception.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/parse.py to parse.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_err.py to test_err.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_util.py to test_util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/long_lines.py to long_lines.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_parse.py to test_parse.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_table.py to test_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_ids.py to table_ids.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/util.py to util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_converter.py to table_converter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_validator.py to table_validator.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_head.py to table_head.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-310.pyc
running install_egg_info
Copying biom_format.egg-info to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom_format-2.1.12.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/bin
I: pybuild pybuild:326: dh_numpy3
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
find debian/python3-biom-format -name .coverage -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format
install -d debian/.debhelper/generated/python3-biom-format
cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format
cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format
chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc
install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright
install -d debian/.debhelper/generated/python-biom-format-doc
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
find debian -name "*.c" -delete
find debian -name "*.pyx" -delete
# move tests from Python3 package to examples package
if [ ! -d biom/tests ] ; then \
mv `find debian/python*biom-format -name tests -type d` biom ; \
else \
find debian/python*biom-format -name tests -type d | xargs rm -rf ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installman -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/share/man/man1/
install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 5.20220403
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.10 (default=3.10)
D: dh_python3 debhelper:141: skipping package: python-biom-format-doc
D: dh_python3 debhelper:169: source=python-biom-format, binary packages=['python3-biom-format']
D: dh_python3 dh_python3:183: processing package python3-biom-format...
D: dh_python3 fs:52: moving files from debian/python3-biom-format/usr/lib/python3.10/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 fs:399: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.10')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-biom-format
D: dh_python3 pydist:172: trying to find dependency for click (python=None)
D: dh_python3 pydist:172: trying to find dependency for cython (python=None)
D: dh_python3 pydist:172: trying to find dependency for cython>=0.29 (python=None)
D: dh_python3 pydist:172: trying to find dependency for h5py (python=None)
D: dh_python3 pydist:172: trying to find dependency for numpy>=1.9.2 (python=None)
D: dh_python3 pydist:172: trying to find dependency for pandas>=0.20.0 (python=None)
D: dh_python3 pydist:172: trying to find dependency for scipy>=1.3.1 (python=None)
D: dh_python3 depends:281: D={'python3-click', 'python3-h5py-serial', 'python3 (<< 3.11)', 'python3 (>= 3.10~)', 'python3-numpy', 'python3-scipy', 'cython3', 'python3:any', 'python3-pandas'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-biom-format
chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
cd '/<<PKGBUILDDIR>>'
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name exercise_cli.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
dh_strip -a -O--buildsystem=pybuild
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/82
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/82/d5457d5d20120526ca8054fd0001b0e555a94e.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/82/d5457d5d20120526ca8054fd0001b0e555a94e.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/82/d5457d5d20120526ca8054fd0001b0e555a94e.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fc
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fc/7a8c05bd652fe3c2a5336fb79c59b4349dc449.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fc/7a8c05bd652fe3c2a5336fb79c59b4349dc449.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fc/7a8c05bd652fe3c2a5336fb79c59b4349dc449.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/b7
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/b7/2395b990e4669ac68831abcd61f9f4c8458130.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/b7/2395b990e4669ac68831abcd61f9f4c8458130.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/b7/2395b990e4669ac68831abcd61f9f4c8458130.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc
ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-biom-format/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/DEBIAN
dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst
cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm
cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-biom-format.substvars
echo misc:Pre-Depends= >> debian/python3-biom-format.substvars
install -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=82d5457d5d20120526ca8054fd0001b0e555a94e b72395b990e4669ac68831abcd61f9f4c8458130 fc7a8c05bd652fe3c2a5336fb79c59b4349dc449" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/python3-biom-format/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums
cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/python3-biom-format ..
dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root ..
dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.12-1_armhf.deb'.
dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.12-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-biom-format_2.1.12-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../python-biom-format_2.1.12-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-08-12T11:14:34Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-biom-format_2.1.12-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Sun, 26 Jun 2022 17:35:00 +0530
Source: python-biom-format
Binary: python3-biom-format python3-biom-format-dbgsym
Architecture: armhf
Version: 2.1.12-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Closes: 1013713
Changes:
python-biom-format (2.1.12-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2.1.12
* Drop d/p/{fix_test.patch,ignore_failing_hdf5_test.patch,
ignore_one_failing_hdf5_test.patch,python3.10.patch,
sphinx_add_javascript.patch}
Refreshed other patches (Closes: #1013713)
Checksums-Sha1:
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Checksums-Sha256:
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ef78dbbfe615af3d347875c65526b5a2befd01fd4af0c42f1b487a4e5df0c68e 123680 python3-biom-format_2.1.12-1_armhf.deb
Files:
e9fe66ab55f4f85d61ec4e40fcea15fa 10742 python optional python-biom-format_2.1.12-1_armhf.buildinfo
1373ff13158cf7b0aa92c63123918fc3 214996 debug optional python3-biom-format-dbgsym_2.1.12-1_armhf.deb
c25eca159df40d43fba4be08c6b07008 123680 python optional python3-biom-format_2.1.12-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-biom-format-dbgsym_2.1.12-1_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 214996 bytes: control archive=708 bytes.
501 bytes, 12 lines control
417 bytes, 4 lines md5sums
Package: python3-biom-format-dbgsym
Source: python-biom-format
Version: 2.1.12-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 255
Depends: python3-biom-format (= 2.1.12-1)
Section: debug
Priority: optional
Description: debug symbols for python3-biom-format
Build-Ids: 82d5457d5d20120526ca8054fd0001b0e555a94e b72395b990e4669ac68831abcd61f9f4c8458130 fc7a8c05bd652fe3c2a5336fb79c59b4349dc449
drwxr-xr-x root/root 0 2022-06-26 12:05 ./
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/debug/.build-id/82/
-rw-r--r-- root/root 111424 2022-06-26 12:05 ./usr/lib/debug/.build-id/82/d5457d5d20120526ca8054fd0001b0e555a94e.debug
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/debug/.build-id/b7/
-rw-r--r-- root/root 47936 2022-06-26 12:05 ./usr/lib/debug/.build-id/b7/2395b990e4669ac68831abcd61f9f4c8458130.debug
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root 74220 2022-06-26 12:05 ./usr/lib/debug/.build-id/fc/7a8c05bd652fe3c2a5336fb79c59b4349dc449.debug
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 12084 2022-06-26 12:05 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-06-26 12:05 ./usr/share/doc/python3-biom-format-dbgsym -> python3-biom-format
python3-biom-format_2.1.12-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 123680 bytes: control archive=2776 bytes.
1952 bytes, 36 lines control
4400 bytes, 48 lines md5sums
285 bytes, 12 lines * postinst #!/bin/sh
429 bytes, 12 lines * prerm #!/bin/sh
Package: python3-biom-format
Source: python-biom-format
Version: 2.1.12-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 749
Depends: python3-h5py, python3-numpy (>= 1:1.20.0), python3-numpy-abi9, cython3, python3 (<< 3.11), python3 (>= 3.10~), python3-click, python3-h5py-serial, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4)
Suggests: python-biom-format-doc
Breaks: biom-format-tools (<< 2.1.7+dfsg-3)
Replaces: biom-format-tools (<< 2.1.7+dfsg-3)
Provides: biom-format-tools
Section: python
Priority: optional
Homepage: https://biom-format.org/
Description: Biological Observation Matrix (BIOM) format (Python 3)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 3 interpreter.
drwxr-xr-x root/root 0 2022-06-26 12:05 ./
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/bin/
-rwxr-xr-x root/root 967 2022-06-26 12:05 ./usr/bin/biom
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/
-rw-r--r-- root/root 3021 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/__init__.py
-rw-r--r-- root/root 68780 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 68504 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 68584 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/assets/
-rw-r--r-- root/root 3582 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/assets/exercise_api.py
-rwxr-xr-x root/root 2205 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/assets/exercise_cli.sh
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom/cli/
-rw-r--r-- root/root 1254 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/__init__.py
-rw-r--r-- root/root 3471 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/installation_informer.py
-rw-r--r-- root/root 7590 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/metadata_adder.py
-rw-r--r-- root/root 1879 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/metadata_exporter.py
-rw-r--r-- root/root 8810 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_converter.py
-rw-r--r-- root/root 1439 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_head.py
-rw-r--r-- root/root 1166 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_ids.py
-rw-r--r-- root/root 2679 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_normalizer.py
-rw-r--r-- root/root 5339 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_subsetter.py
-rw-r--r-- root/root 5350 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_summarizer.py
-rw-r--r-- root/root 20209 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/table_validator.py
-rw-r--r-- root/root 2908 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/uc_processor.py
-rw-r--r-- root/root 1030 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/cli/util.py
-rw-r--r-- root/root 14322 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/err.py
-rw-r--r-- root/root 1408 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/exception.py
-rw-r--r-- root/root 22454 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/parse.py
-rw-r--r-- root/root 194581 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/table.py
-rw-r--r-- root/root 16566 2022-03-26 00:15 ./usr/lib/python3/dist-packages/biom/util.py
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/
-rw-r--r-- root/root 1600 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/dependency_links.txt
-rw-r--r-- root/root 63 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/entry_points.txt
-rw-r--r-- root/root 39 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/requires.txt
-rw-r--r-- root/root 5 2022-06-26 12:05 ./usr/lib/python3/dist-packages/biom_format-2.1.12.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/lib/python3/dist-packages/examples/
-rw-r--r-- root/root 1343 2022-06-26 12:05 ./usr/lib/python3/dist-packages/examples/min_sparse_otu_table.biom
-rw-r--r-- root/root 33800 2022-06-26 12:05 ./usr/lib/python3/dist-packages/examples/min_sparse_otu_table_hdf5.biom
-rw-r--r-- root/root 555 2022-06-26 12:05 ./usr/lib/python3/dist-packages/examples/obs_md.txt
-rw-r--r-- root/root 3431 2022-06-26 12:05 ./usr/lib/python3/dist-packages/examples/rich_sparse_otu_table.biom
-rw-r--r-- root/root 46952 2022-06-26 12:05 ./usr/lib/python3/dist-packages/examples/rich_sparse_otu_table_hdf5.biom
-rw-r--r-- root/root 244 2022-06-26 12:05 ./usr/lib/python3/dist-packages/examples/sam_md.txt
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/doc/python3-biom-format/
-rw-r--r-- root/root 278 2022-06-26 11:54 ./usr/share/doc/python3-biom-format/README.test
-rw-r--r-- root/root 3901 2022-06-26 12:05 ./usr/share/doc/python3-biom-format/changelog.Debian.gz
-rw-r--r-- root/root 9593 2022-03-26 00:15 ./usr/share/doc/python3-biom-format/changelog.gz
-rw-r--r-- root/root 1613 2022-06-26 11:54 ./usr/share/doc/python3-biom-format/copyright
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/doc/python3-biom-format/examples/
-rw-r--r-- root/root 1343 2022-03-26 00:15 ./usr/share/doc/python3-biom-format/examples/min_sparse_otu_table.biom
-rw-r--r-- root/root 33800 2022-03-26 00:15 ./usr/share/doc/python3-biom-format/examples/min_sparse_otu_table_hdf5.biom
-rw-r--r-- root/root 555 2022-03-26 00:15 ./usr/share/doc/python3-biom-format/examples/obs_md.txt
-rw-r--r-- root/root 3431 2022-03-26 00:15 ./usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table.biom
-rw-r--r-- root/root 46952 2022-03-26 00:15 ./usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table_hdf5.biom
-rw-r--r-- root/root 244 2022-03-26 00:15 ./usr/share/doc/python3-biom-format/examples/sam_md.txt
-rw-r--r-- root/root 979 2022-06-26 11:54 ./usr/share/doc/python3-biom-format/run-unit-test
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/man/
drwxr-xr-x root/root 0 2022-06-26 12:05 ./usr/share/man/man1/
-rw-r--r-- root/root 620 2022-06-26 12:05 ./usr/share/man/man1/biom.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 109284
Build-Time: 268
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2129
Job: python-biom-format_2.1.12-1
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 2463
Source-Version: 2.1.12-1
Space: 109284
Status: successful
Version: 2.1.12-1
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Finished at 2022-08-12T11:14:34Z
Build needed 00:41:03, 109284k disc space