python-biom-format →
2.1.10-4 →
armhf → 2022-04-23 13:58:07
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| python-biom-format 2.1.10-4 (armhf) Sat, 23 Apr 2022 13:32:04 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.10-4
Source Version: 2.1.10-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-ae627bc9-984c-480c-8508-b937b3c3db0d' with '<<CHROOT>>'
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| Update chroot |
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Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
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Reading package lists...
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W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
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| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8562 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-4 (dsc) [2433 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-4 (tar) [8532 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-4 (diff) [26.9 kB]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-Bn2XYX/python-biom-format-2.1.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-Bn2XYX' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-1mmee5/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-1mmee5/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-1mmee5/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ InRelease
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Get:4 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ Sources [349 B]
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Reading package lists...
Install core build dependencies (apt-based resolver)
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 53 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
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Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
Filtered Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-1mmee5/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ Sources [611 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ Packages [681 B]
Fetched 2625 B in 0s (12.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gcc-12-base gettext gettext-base groff-base
help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1
libbsd0 libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
libjs-jquery-metadata libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblocale-gettext-perl
liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal
libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsigsegv2
libsmartcols1 libssh2-1 libsub-override-perl libsz2 libtcl8.6 libtiff5
libtk8.6 libtool libuchardet0 libunicode-escape-perl libunicode-string-perl
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db
media-types openssl po-debconf python-babel-localedata
python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev
python3-appdirs python3-attr python3-babel python3-brotli python3-certifi
python3-chardet python3-charset-normalizer python3-click python3-colorama
python3-cov-core python3-coverage python3-cycler python3-dateutil
python3-decorator python3-dev python3-distutils python3-docutils
python3-fonttools python3-fs python3-future python3-h5py python3-h5py-serial
python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-nose python3-nose2 python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-py python3-pygments
python3-pyparsing python3-pytest python3-pytest-cov python3-requests
python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-toml
python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-zipp
python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev
python3.9-minimal sgml-base sphinx-common tk8.6-blt2.5 ucf unicode-data
x11-common xml-core zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
libgettextpo-dev groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-venv python-attr-doc
python-coverage-doc python-cycler-doc docutils-doc fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended python-future-doc python-h5py-doc
python-jinja2-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 python-nose-doc python-nose2-doc gfortran
python-numpy-doc python-pandas-doc python3-statsmodels python-pil-doc
subversion python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
python3-cryptography python3-openssl python3-socks python-requests-doc
python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf
imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc
tex-gyre texlive-fonts-recommended texlive-plain-generic texlive-fonts-extra
python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc
binfmt-support python3.9-venv python3.9-doc sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl libpaper-utils python3-bs4 python3-html5lib
python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt
python3-tables python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gcc-12-base gettext gettext-base groff-base
help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1
libbsd0 libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
libjs-jquery-metadata libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblocale-gettext-perl
liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal
libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0
libunicode-escape-perl libunicode-string-perl libwebp7 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db media-types openssl
po-debconf python-babel-localedata python-matplotlib-data python3
python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr
python3-babel python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-click python3-colorama python3-cov-core
python3-coverage python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-docutils python3-fonttools python3-fs
python3-future python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-nose python3-nose2 python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-py python3-pygments
python3-pyparsing python3-pytest python3-pytest-cov python3-requests
python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-toml
python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-zipp
python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev
python3.9-minimal sbuild-build-depends-python-biom-format-dummy sgml-base
sphinx-common tk8.6-blt2.5 ucf unicode-data x11-common xml-core zlib1g-dev
The following packages will be upgraded:
libsmartcols1 zlib1g
2 upgraded, 204 newly installed, 0 to remove and 51 not upgraded.
Need to get 120 MB of archives.
After this operation, 546 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1mmee5/apt_archive ./ sbuild-build-depends-python-biom-format-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b2 [18.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
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Get:7 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-4 [84.2 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.4-1 [1633 kB]
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Get:11 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
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Get:16 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.12-1+rpi1 [794 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.12-1+rpi1 [1595 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38-4 [149 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
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Get:23 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf bash-completion all 1:2.11-6 [234 kB]
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Get:28 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
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Get:30 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
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Get:32 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
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Get:43 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.28-3+rpi1 [1456 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7.1 [195 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-3 [526 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7.1 [1071 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12-20220319-1+rpi1 [207 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-1 [108 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.82.0-2 [317 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.10-2 [55.4 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12-20220319-1+rpi1 [238 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.1-1 [1231 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1 [1246 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-metadata all 12-3 [7660 B]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.1+dfsg-1 [250 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-3 [142 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-1 [1587 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-10 [24.2 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-6 [150 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.4-1 [1454 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.4-1 [2984 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.4-1 [22.0 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.12-1+rpi1 [1611 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.12-1+rpi1 [1419 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.12-1+rpi1 [3013 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.4-1 [1072 B]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-4 [221 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-6+b1 [273 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libunicode-string-perl armhf 2.10-1+b6 [98.7 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libunicode-escape-perl all 0.0.2-4.1 [12.9 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2 [97.1 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2 [105 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.34-4 [218 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.1-2 [2741 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.12-1+rpi1 [492 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.4-1 [1064 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.4-1 [508 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.4-1 [25.4 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.12-1+rpi1 [501 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.4-1 [1076 B]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-2 [12.9 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 21.2.0-1 [57.5 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.1-1 [34.8 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.8.0+dfsg.1-7 [100 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b2 [278 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.4-1 [28.5 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.0.3-1 [91.9 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-coverage armhf 6.2+dfsg1-2+b1 [152 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-nose2 all 0.9.2-1 [94.1 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-cov-core all 1.15.0-3 [7528 B]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-1 [10.7 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.3-2+b1 [13.0 MB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.9-1 [4227 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.12-1 [89.1 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.8.0-1 [1297 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.0+dfsg-1 [24.0 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds-8 [296 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 14.0.0-1.1 [7868 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.32.0-1 [795 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-5 [349 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.6.0-2+b1 [850 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.6.0-2 [13.1 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.3.0-1 [6360 B]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.0.1-2+b1 [13.5 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-1 [121 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1+b1 [52.1 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.0.1-1+b1 [429 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.9.12-1 [104 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.0.1-1+b1 [76.9 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-2 [140 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.1-2+b1 [7154 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-nose all 1.3.7-8 [133 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-4 [4581 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-4 [2655 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0-1 [19.6 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.11.2+dfsg-2 [744 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 6.2.5-2 [218 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-cov all 3.0.0-1 [25.7 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.9-1 [116 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.27.1+dfsg-1 [71.9 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-1 [58.5 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 4.5.0-3 [638 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 4.5.0-3 [540 kB]
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-pkg-resources (59.6.0-1.2) ...
Setting up python3-distutils (3.9.12-1) ...
Setting up dh-python (5.20220403) ...
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Setting up libxft2:armhf (2.3.4-1) ...
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Setting up python3-py (1.10.0-1) ...
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update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
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Setting up python3-lz4 (4.0.0+dfsg-1) ...
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Setting up python3-unicodedata2 (14.0.0+ds-8) ...
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Setting up python3-all (3.10.4-1) ...
Setting up python3-coverage (6.2+dfsg1-2+b1) ...
Setting up debhelper (13.7.1) ...
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Setting up python3-click (8.0.3-1) ...
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Setting up python3-jinja2 (3.0.3-1) ...
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Setting up python3-packaging (21.3-1) ...
Setting up python3-chardet (4.0.0-1) ...
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Setting up python3-requests (2.27.1+dfsg-1) ...
Setting up python3-numpy (1:1.21.5-1+b1) ...
Setting up python3-future (0.18.2-5) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-all-dev (3.10.4-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-scipy (1.7.3-2+b1) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
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Setting up blt (2.5.3+dfsg-4.1) ...
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Setting up python3-pil.imagetk:armhf (9.0.1-1+b1) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Setting up python3-pil:armhf (9.0.1-1+b1) ...
Setting up python3-matplotlib (3.5.1-2+b1) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.17.1+dfsg-2) ...
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Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
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Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.2+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.16.14-1+rpi1
Package versions: adduser_3.120 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 bash-completion_1:2.11-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38-4 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 cython3_0.29.28-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 docutils-common_0.17.1+dfsg-2 dpkg_1.21.2+rpi1 dpkg-dev_1.21.2+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 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perl-base_5.34.0-3 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-babel-localedata_2.8.0+dfsg.1-7 python-matplotlib-data_3.5.1-2 python3_3.10.4-1 python3-alabaster_0.7.12-1 python3-all_3.10.4-1 python3-all-dev_3.10.4-1 python3-appdirs_1.4.4-2 python3-attr_21.2.0-1 python3-babel_2.8.0+dfsg.1-7 python3-brotli_1.0.9-2+b2 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-charset-normalizer_2.0.6-2 python3-click_8.0.3-1 python3-colorama_0.4.4-1 python3-cov-core_1.15.0-3 python3-coverage_6.2+dfsg1-2+b1 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.10.4-1 python3-distutils_3.9.12-1 python3-docutils_0.17.1+dfsg-2 python3-fonttools_4.32.0-1 python3-fs_2.4.12-1 python3-future_0.18.2-5 python3-h5py_3.6.0-2 python3-h5py-serial_3.6.0-2+b1 python3-idna_3.3-1 python3-imagesize_1.3.0-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-2 python3-jinja2_3.0.3-1 python3-kiwisolver_1.3.2-1+b1 python3-lib2to3_3.9.12-1 python3-lxml_4.8.0-1 python3-lz4_4.0.0+dfsg-1 python3-markupsafe_2.0.1-2+b1 python3-matplotlib_3.5.1-2+b1 python3-minimal_3.10.4-1 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-nose_1.3.7-8 python3-nose2_0.9.2-1 python3-numpy_1:1.21.5-1+b1 python3-packaging_21.3-1 python3-pandas_1.3.5+dfsg-4 python3-pandas-lib_1.3.5+dfsg-4 python3-pil_9.0.1-1+b1 python3-pil.imagetk_9.0.1-1+b1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0-1 python3-py_1.10.0-1 python3-pygments_2.11.2+dfsg-2 python3-pyparsing_3.0.7-2 python3-pytest_6.2.5-2 python3-pytest-cov_3.0.0-1 python3-requests_2.27.1+dfsg-1 python3-roman_3.3-1 python3-scipy_1.7.3-2+b1 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-3 python3-snowballstemmer_2.2.0-1 python3-sphinx_4.5.0-3 python3-sympy_1.9-1 python3-tk_3.9.12-1 python3-toml_0.10.2-1 python3-tz_2022.1-1 python3-ufolib2_0.13.1+dfsg1-1 python3-unicodedata2_14.0.0+ds-8 python3-urllib3_1.26.9-1 python3-zipp_1.0.0-3 python3.10_3.10.4-1 python3.10-dev_3.10.4-1 python3.10-minimal_3.10.4-1 python3.9_3.9.12-1+rpi1 python3.9-dev_3.9.12-1+rpi1 python3.9-minimal_3.9.12-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_4.5.0-3 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2021e-1 ucf_3.0043 unicode-data_14.0.0-1.1 util-linux_2.37.3-1 x11-common_1:7.7+23 xml-core_0.18+nmu1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.EbyITCDf/trustedkeys.kbx': General error
gpgv: Signature made Mon Apr 11 19:50:29 2022 UTC
gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-biom-format_2.1.10-4.dsc
dpkg-source: info: extracting python-biom-format in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-biom-format_2.1.10.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.10-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch
dpkg-source: info: applying sphinx_add_javascript.patch
dpkg-source: info: applying fix_test.patch
dpkg-source: info: applying ignore_failing_hdf5_test.patch
dpkg-source: info: applying python3.10.patch
dpkg-source: info: applying ignore_one_failing_hdf5_test.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-ae627bc9-984c-480c-8508-b937b3c3db0d
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.10-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --clean -i python{version} -p "3.9 3.10"
I: pybuild base:239: python3.9 setup.py clean
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:239: python3.10 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --configure -i python{version} -p "3.9 3.10"
I: pybuild base:239: python3.9 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running config
I: pybuild base:239: python3.10 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build -i python{version} -p "3.9 3.10"
I: pybuild base:239: /usr/bin/python3.9 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armhf-3.9/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.cpython-39-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armhf-3.9/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.cpython-39-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armhf-3.9/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
I: pybuild base:239: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_filter.c -o build/temp.linux-armhf-3.10/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.cpython-310-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_transform.c -o build/temp.linux-armhf-3.10/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.cpython-310-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_subsample.c -o build/temp.linux-armhf-3.10/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
Failed to import biom.table.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices... done
writing additional pages... search done
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
Failed to import biom.table.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p "3.9 3.10"
I: pybuild pybuild:300: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build; python3.9 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.9.12, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
plugins: cov-3.0.0
collected 356 items
biom/tests/test_err.py ..................... [ 5%]
biom/tests/test_parse.py ......................... [ 12%]
biom/tests/test_table.py ............................................... [ 26%]
.................s..................................................sss. [ 46%]
...........s............................................................ [ 66%]
..................................................... [ 81%]
biom/tests/test_util.py ..s................ [ 86%]
biom/tests/test_cli/test_add_metadata.py .... [ 87%]
biom/tests/test_cli/test_show_install_info.py . [ 88%]
biom/tests/test_cli/test_subset_table.py ..... [ 89%]
biom/tests/test_cli/test_summarize_table.py .. [ 90%]
biom/tests/test_cli/test_table_converter.py ...... [ 91%]
biom/tests/test_cli/test_table_normalizer.py . [ 92%]
biom/tests/test_cli/test_uc_processor.py ...... [ 93%]
biom/tests/test_cli/test_validate_table.py ...................... [100%]
=============================== warnings summary ===============================
biom/tests/test_table.py:19
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py:19: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead.
import pandas.util.testing as pdt
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:125: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py:4059: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
data = np.hstack(h5_data[start:end]
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py:4061: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
indices = np.hstack(h5_indices[start:end]
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:82: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_intXint(row, col, x.flat[0])
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:88: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num samples: ' + locale.format('%d', num_samples,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:90: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num observations: ' + locale.format('%d',
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:95: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Total count: ' + locale.format('%d', total_count,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:110: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True))
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True))
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Median: ' + locale.format('%1.3f', median_counts,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:114: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Mean: ' + locale.format('%1.3f', mean_counts,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:116: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Std. dev.: ' + locale.format('%1.3f',
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:143: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True))
-- Docs: https://docs.pytest.org/en/stable/warnings.html
---------- coverage: platform linux, python 3.9.12-final-0 -----------
Name Stmts Miss Cover
-------------------------------------------------------------------
biom/__init__.py 16 0 100%
biom/cli/__init__.py 23 4 83%
biom/cli/installation_informer.py 57 11 81%
biom/cli/metadata_adder.py 78 29 63%
biom/cli/metadata_exporter.py 19 10 47%
biom/cli/table_converter.py 84 19 77%
biom/cli/table_head.py 14 5 64%
biom/cli/table_ids.py 10 3 70%
biom/cli/table_normalizer.py 24 5 79%
biom/cli/table_subsetter.py 73 19 74%
biom/cli/table_summarizer.py 67 15 78%
biom/cli/table_validator.py 318 65 80%
biom/cli/uc_processor.py 36 7 81%
biom/cli/util.py 17 5 71%
biom/err.py 122 1 99%
biom/exception.py 26 0 100%
biom/parse.py 304 66 78%
biom/table.py 1608 148 91%
biom/tests/__init__.py 0 0 100%
biom/tests/long_lines.py 8 0 100%
biom/tests/test_cli/__init__.py 0 0 100%
biom/tests/test_cli/test_add_metadata.py 40 1 98%
biom/tests/test_cli/test_show_install_info.py 8 1 88%
biom/tests/test_cli/test_subset_table.py 59 1 98%
biom/tests/test_cli/test_summarize_table.py 21 1 95%
biom/tests/test_cli/test_table_converter.py 80 1 99%
biom/tests/test_cli/test_table_normalizer.py 22 1 95%
biom/tests/test_cli/test_uc_processor.py 38 1 97%
biom/tests/test_cli/test_validate_table.py 306 1 99%
biom/tests/test_data/__init__.py 0 0 100%
biom/tests/test_err.py 162 4 98%
biom/tests/test_parse.py 229 1 99%
biom/tests/test_table.py 2413 34 99%
biom/tests/test_util.py 145 6 96%
biom/util.py 184 30 84%
-------------------------------------------------------------------
TOTAL 6611 495 93%
================= 350 passed, 6 skipped, 46 warnings in 28.07s =================
I: pybuild pybuild:300: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build; python3.10 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.10.4, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
plugins: cov-3.0.0
collected 356 items
biom/tests/test_err.py ..................... [ 5%]
biom/tests/test_parse.py ......................... [ 12%]
biom/tests/test_table.py ............................................... [ 26%]
.................s..................................................sss. [ 46%]
...........s............................................................ [ 66%]
..................................................... [ 81%]
biom/tests/test_util.py ..s................ [ 86%]
biom/tests/test_cli/test_add_metadata.py .... [ 87%]
biom/tests/test_cli/test_show_install_info.py . [ 88%]
biom/tests/test_cli/test_subset_table.py ..... [ 89%]
biom/tests/test_cli/test_summarize_table.py .. [ 90%]
biom/tests/test_cli/test_table_converter.py ...... [ 91%]
biom/tests/test_cli/test_table_normalizer.py . [ 92%]
biom/tests/test_cli/test_uc_processor.py ...... [ 93%]
biom/tests/test_cli/test_validate_table.py ...................... [100%]
=============================== warnings summary ===============================
biom/tests/test_table.py:19
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py:19: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead.
import pandas.util.testing as pdt
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:125: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py:4059: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
data = np.hstack(h5_data[start:end]
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py:4061: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
indices = np.hstack(h5_indices[start:end]
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:82: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_intXint(row, col, x.flat[0])
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:88: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num samples: ' + locale.format('%d', num_samples,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:90: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num observations: ' + locale.format('%d',
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:95: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Total count: ' + locale.format('%d', total_count,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:110: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True))
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True))
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Median: ' + locale.format('%1.3f', median_counts,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:114: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Mean: ' + locale.format('%1.3f', mean_counts,
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:116: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Std. dev.: ' + locale.format('%1.3f',
.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py:143: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True))
-- Docs: https://docs.pytest.org/en/stable/warnings.html
---------- coverage: platform linux, python 3.10.4-final-0 -----------
Name Stmts Miss Cover
-------------------------------------------------------------------
biom/__init__.py 16 0 100%
biom/cli/__init__.py 23 4 83%
biom/cli/installation_informer.py 57 11 81%
biom/cli/metadata_adder.py 78 29 63%
biom/cli/metadata_exporter.py 19 10 47%
biom/cli/table_converter.py 84 18 79%
biom/cli/table_head.py 14 5 64%
biom/cli/table_ids.py 10 3 70%
biom/cli/table_normalizer.py 24 5 79%
biom/cli/table_subsetter.py 73 19 74%
biom/cli/table_summarizer.py 67 15 78%
biom/cli/table_validator.py 318 65 80%
biom/cli/uc_processor.py 36 6 83%
biom/cli/util.py 17 5 71%
biom/err.py 122 1 99%
biom/exception.py 26 0 100%
biom/parse.py 304 64 79%
biom/table.py 1610 148 91%
biom/tests/__init__.py 0 0 100%
biom/tests/long_lines.py 8 0 100%
biom/tests/test_cli/__init__.py 0 0 100%
biom/tests/test_cli/test_add_metadata.py 40 1 98%
biom/tests/test_cli/test_show_install_info.py 8 1 88%
biom/tests/test_cli/test_subset_table.py 59 1 98%
biom/tests/test_cli/test_summarize_table.py 21 1 95%
biom/tests/test_cli/test_table_converter.py 80 1 99%
biom/tests/test_cli/test_table_normalizer.py 22 1 95%
biom/tests/test_cli/test_uc_processor.py 38 1 97%
biom/tests/test_cli/test_validate_table.py 306 1 99%
biom/tests/test_data/__init__.py 0 0 100%
biom/tests/test_err.py 162 4 98%
biom/tests/test_parse.py 229 1 99%
biom/tests/test_table.py 2413 34 99%
biom/tests/test_util.py 145 7 95%
biom/util.py 185 30 84%
-------------------------------------------------------------------
TOTAL 6614 492 93%
================= 350 passed, 6 skipped, 46 warnings in 42.35s =================
rm -fr -- /tmp/dh-xdg-rundir-tpGeBP8R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
rm -f -- debian/python3-biom-format.substvars
rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
install -d /<<PKGBUILDDIR>>/debian/tmp
pybuild --install -i python{version} -p "3.9 3.10" --dest-dir /<<PKGBUILDDIR>>/debian/tmp
I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-biom-format
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/exception.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_head.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/util.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_converter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_head.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_ids.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/table_validator.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_err.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_parse.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/long_lines.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_table.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/__pycache__/test_util.cpython-39-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/table.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/exception.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/util.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/err.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/__pycache__/parse.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/min_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/obs_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/rich_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/examples/sam_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/.coverage -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/err.py to err.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/exception.py to exception.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/parse.py to parse.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/table.py to table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/util.py to util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_ids.py to table_ids.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_converter.py to table_converter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_head.py to table_head.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/table_validator.py to table_validator.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/cli/util.py to util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/long_lines.py to long_lines.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_err.py to test_err.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_parse.py to test_parse.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_util.py to test_util.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_table.py to test_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-39.pyc
running install_egg_info
Copying biom_format.egg-info to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.9/dist-packages/biom_format-2.1.10.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/bin
I: pybuild pybuild:326: dh_numpy3
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
I: pybuild base:239: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-biom-format
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/exception.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_head.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/util.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_converter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_head.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_ids.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/table_validator.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_err.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_util.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_err.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_parse.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/long_lines.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_table.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/__pycache__/test_util.cpython-310-pytest-6.2.5.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.pyx -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/table.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/exception.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/util.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/err.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/__pycache__/parse.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/min_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/obs_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/rich_sparse_otu_table.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/examples/sam_md.txt -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/examples
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/.coverage -> /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/err.py to err.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/exception.py to exception.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/parse.py to parse.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/table.py to table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/util.py to util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_ids.py to table_ids.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_converter.py to table_converter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_head.py to table_head.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/table_validator.py to table_validator.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/cli/util.py to util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/long_lines.py to long_lines.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_err.py to test_err.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_parse.py to test_parse.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_util.py to test_util.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_table.py to test_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-310.pyc
running install_egg_info
Copying biom_format.egg-info to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/lib/python3.10/dist-packages/biom_format-2.1.10.egg-info
Skipping SOURCES.txt
running install_scripts
Installing biom script to /<<PKGBUILDDIR>>/debian/python3-biom-format/usr/bin
I: pybuild pybuild:326: dh_numpy3
mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars
find debian/python3-biom-format -name .coverage -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format
install -d debian/.debhelper/generated/python3-biom-format
cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format
cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format
chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc
install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright
install -d debian/.debhelper/generated/python-biom-format-doc
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
install -p -m0644 debian/changelog debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian
install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
install -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples
find debian -name "*.c" -delete
find debian -name "*.pyx" -delete
# move tests from Python3 package to examples package
if [ ! -d biom/tests ] ; then \
mv `find debian/python*biom-format -name tests -type d` biom ; \
else \
find debian/python*biom-format -name tests -type d | xargs rm -rf ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installman -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/share/man/man1/
install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1
man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1
chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1
dh_python3 -a -O--buildsystem=pybuild
D: dh_python3 dh_python3:161: version: 5.20220403
D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'}
D: dh_python3 dh_python3:164: args: []
D: dh_python3 dh_python3:165: supported Python versions: 3.9,3.10 (default=3.10)
D: dh_python3 debhelper:141: skipping package: python-biom-format-doc
D: dh_python3 debhelper:169: source=python-biom-format, binary packages=['python3-biom-format']
D: dh_python3 dh_python3:183: processing package python3-biom-format...
D: dh_python3 fs:52: moving files from debian/python3-biom-format/usr/lib/python3.9/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 fs:52: moving files from debian/python3-biom-format/usr/lib/python3.10/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/
D: dh_python3 fs:399: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.10'), Version('3.9')}, 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-biom-format
D: dh_python3 pydist:172: trying to find dependency for click (python=None)
D: dh_python3 pydist:172: trying to find dependency for cython (python=None)
D: dh_python3 pydist:172: trying to find dependency for cython>=0.29 (python=None)
D: dh_python3 pydist:172: trying to find dependency for h5py (python=None)
D: dh_python3 pydist:172: trying to find dependency for numpy>=1.9.2 (python=None)
D: dh_python3 pydist:172: trying to find dependency for pandas>=0.20.0 (python=None)
D: dh_python3 pydist:172: trying to find dependency for scipy>=1.3.1 (python=None)
D: dh_python3 depends:281: D={'python3 (>= 3.9~)', 'python3-click', 'python3-numpy', 'python3-pandas', 'python3-h5py-serial', 'python3 (<< 3.11)', 'cython3', 'python3-scipy', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[]
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
cd debian/python3-biom-format
chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1
cd '/<<PKGBUILDDIR>>'
rm -f debian/python3-biom-format.debhelper.log
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian -name exercise_cli.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
dh_strip -a -O--buildsystem=pybuild
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/62
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/62/6f1dd830bebbb1de79dd9036128fe769ba4835.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/62/6f1dd830bebbb1de79dd9036128fe769ba4835.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/62/6f1dd830bebbb1de79dd9036128fe769ba4835.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f8
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f8/c2dfb99f9dc5538a39cf41688ce4af3d9e89af.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f8/c2dfb99f9dc5538a39cf41688ce4af3d9e89af.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/f8/c2dfb99f9dc5538a39cf41688ce4af3d9e89af.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/83
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/83/4701090b4e030c1150487546a52fb6d9266fbd.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/83/4701090b4e030c1150487546a52fb6d9266fbd.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/83/4701090b4e030c1150487546a52fb6d9266fbd.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fe
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fe/cdbb302f12df6105480a9b8149e7f64d16b8b0.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fe/cdbb302f12df6105480a9b8149e7f64d16b8b0.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/fe/cdbb302f12df6105480a9b8149e7f64d16b8b0.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/32
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/32/fbd4f9110399671166bb7cf07ea632b42062bd.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/32/fbd4f9110399671166bb7cf07ea632b42062bd.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/32/fbd4f9110399671166bb7cf07ea632b42062bd.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a5
objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a5/407e0c550d953a4c9e3200d5ff5e011d522f40.debug
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a5/407e0c550d953a4c9e3200d5ff5e011d522f40.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/a5/407e0c550d953a4c9e3200d5ff5e011d522f40.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/python3-biom-format/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug
install -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc
ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym
dh_makeshlibs -a -O--buildsystem=pybuild
rm -f debian/python3-biom-format/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=pybuild
install -d debian/python3-biom-format/DEBIAN
dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
dh_installdeb -a -O--buildsystem=pybuild
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst
cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst
chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst
printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm
cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm
chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm
dh_gencontrol -a -O--buildsystem=pybuild
echo misc:Depends= >> debian/python3-biom-format.substvars
echo misc:Pre-Depends= >> debian/python3-biom-format.substvars
install -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=32fbd4f9110399671166bb7cf07ea632b42062bd 626f1dd830bebbb1de79dd9036128fe769ba4835 834701090b4e030c1150487546a52fb6d9266fbd a5407e0c550d953a4c9e3200d5ff5e011d522f40 f8c2dfb99f9dc5538a39cf41688ce4af3d9e89af fecdbb302f12df6105480a9b8149e7f64d16b8b0" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -Pdebian/python3-biom-format
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-biom-format: substitution variable ${python3:Versions} unused, but is defined
chmod 0644 -- debian/python3-biom-format/DEBIAN/control
dh_md5sums -a -O--buildsystem=pybuild
cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums
cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb --root-owner-group --build debian/python3-biom-format ..
dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root ..
dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.10-4_armhf.deb'.
dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.10-4_armhf.deb'.
dpkg-genbuildinfo --build=any -O../python-biom-format_2.1.10-4_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../python-biom-format_2.1.10-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-04-23T13:58:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-biom-format_2.1.10-4_armhf.changes:
------------------------------------------
Format: 1.8
Date: Mon, 11 Apr 2022 19:47:14 +0000
Source: python-biom-format
Binary: python3-biom-format python3-biom-format-dbgsym
Architecture: armhf
Version: 2.1.10-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Graham Inggs <ginggs@debian.org>
Description:
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Changes:
python-biom-format (2.1.10-4) unstable; urgency=medium
.
* Team upload
* The h5py issue appears to be solved, so enable builds on
all architectures again to fix lefse autopkgtest on s390x
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-biom-format-dbgsym_2.1.10-4_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 431828 bytes: control archive=860 bytes.
624 bytes, 12 lines control
735 bytes, 7 lines md5sums
Package: python3-biom-format-dbgsym
Source: python-biom-format
Version: 2.1.10-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 513
Depends: python3-biom-format (= 2.1.10-4)
Section: debug
Priority: optional
Description: debug symbols for python3-biom-format
Build-Ids: 32fbd4f9110399671166bb7cf07ea632b42062bd 626f1dd830bebbb1de79dd9036128fe769ba4835 834701090b4e030c1150487546a52fb6d9266fbd a5407e0c550d953a4c9e3200d5ff5e011d522f40 f8c2dfb99f9dc5538a39cf41688ce4af3d9e89af fecdbb302f12df6105480a9b8149e7f64d16b8b0
drwxr-xr-x root/root 0 2022-04-11 19:47 ./
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.build-id/32/
-rw-r--r-- root/root 48528 2022-04-11 19:47 ./usr/lib/debug/.build-id/32/fbd4f9110399671166bb7cf07ea632b42062bd.debug
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.build-id/62/
-rw-r--r-- root/root 114272 2022-04-11 19:47 ./usr/lib/debug/.build-id/62/6f1dd830bebbb1de79dd9036128fe769ba4835.debug
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drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root 48452 2022-04-11 19:47 ./usr/lib/debug/.build-id/a5/407e0c550d953a4c9e3200d5ff5e011d522f40.debug
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.build-id/f8/
-rw-r--r-- root/root 113780 2022-04-11 19:47 ./usr/lib/debug/.build-id/f8/c2dfb99f9dc5538a39cf41688ce4af3d9e89af.debug
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.build-id/fe/
-rw-r--r-- root/root 79212 2022-04-11 19:47 ./usr/lib/debug/.build-id/fe/cdbb302f12df6105480a9b8149e7f64d16b8b0.debug
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 20312 2022-04-11 19:47 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biom-format.debug
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/share/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-04-11 19:47 ./usr/share/doc/python3-biom-format-dbgsym -> python3-biom-format
python3-biom-format_2.1.10-4_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 137888 bytes: control archive=2840 bytes.
1951 bytes, 36 lines control
4739 bytes, 51 lines md5sums
285 bytes, 12 lines * postinst #!/bin/sh
429 bytes, 12 lines * prerm #!/bin/sh
Package: python3-biom-format
Source: python-biom-format
Version: 2.1.10-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 853
Depends: python3-h5py, python3-numpy (>= 1:1.20.0), python3-numpy-abi9, cython3, python3 (<< 3.11), python3 (>= 3.9~), python3-click, python3-h5py-serial, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4)
Suggests: python-biom-format-doc
Breaks: biom-format-tools (<< 2.1.7+dfsg-3)
Replaces: biom-format-tools (<< 2.1.7+dfsg-3)
Provides: biom-format-tools
Section: python
Priority: optional
Homepage: https://biom-format.org/
Description: Biological Observation Matrix (BIOM) format (Python 3)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 3 interpreter.
drwxr-xr-x root/root 0 2022-04-11 19:47 ./
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/bin/
-rwxr-xr-x root/root 967 2022-04-11 19:47 ./usr/bin/biom
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/python3/dist-packages/
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-rw-r--r-- root/root 3021 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/__init__.py
-rw-r--r-- root/root 68780 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/_filter.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 72876 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/_filter.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 52120 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 52120 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root 35816 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/_transform.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root 35816 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/_transform.cpython-39-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/assets/
-rw-r--r-- root/root 3582 2020-11-16 20:23 ./usr/lib/python3/dist-packages/biom/assets/exercise_api.py
-rwxr-xr-x root/root 2205 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/assets/exercise_cli.sh
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/
-rw-r--r-- root/root 1254 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/__init__.py
-rw-r--r-- root/root 3471 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/installation_informer.py
-rw-r--r-- root/root 7590 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/metadata_adder.py
-rw-r--r-- root/root 1879 2020-11-16 20:23 ./usr/lib/python3/dist-packages/biom/cli/metadata_exporter.py
-rw-r--r-- root/root 8810 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/table_converter.py
-rw-r--r-- root/root 1439 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/table_head.py
-rw-r--r-- root/root 1166 2020-11-16 20:23 ./usr/lib/python3/dist-packages/biom/cli/table_ids.py
-rw-r--r-- root/root 2679 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/table_normalizer.py
-rw-r--r-- root/root 5339 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/table_subsetter.py
-rw-r--r-- root/root 5350 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/table_summarizer.py
-rw-r--r-- root/root 20209 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/table_validator.py
-rw-r--r-- root/root 2908 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/uc_processor.py
-rw-r--r-- root/root 1030 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/cli/util.py
-rw-r--r-- root/root 14322 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/err.py
-rw-r--r-- root/root 1408 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/exception.py
-rw-r--r-- root/root 22454 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/parse.py
-rw-r--r-- root/root 189292 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/table.py
-rw-r--r-- root/root 16566 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom/util.py
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/
-rw-r--r-- root/root 1600 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/dependency_links.txt
-rw-r--r-- root/root 63 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/entry_points.txt
-rw-r--r-- root/root 39 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/requires.txt
-rw-r--r-- root/root 5 2022-04-11 19:47 ./usr/lib/python3/dist-packages/biom_format-2.1.10.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/lib/python3/dist-packages/examples/
-rw-r--r-- root/root 1343 2022-04-11 19:47 ./usr/lib/python3/dist-packages/examples/min_sparse_otu_table.biom
-rw-r--r-- root/root 33800 2022-04-11 19:47 ./usr/lib/python3/dist-packages/examples/min_sparse_otu_table_hdf5.biom
-rw-r--r-- root/root 555 2022-04-11 19:47 ./usr/lib/python3/dist-packages/examples/obs_md.txt
-rw-r--r-- root/root 3431 2022-04-11 19:47 ./usr/lib/python3/dist-packages/examples/rich_sparse_otu_table.biom
-rw-r--r-- root/root 46952 2022-04-11 19:47 ./usr/lib/python3/dist-packages/examples/rich_sparse_otu_table_hdf5.biom
-rw-r--r-- root/root 244 2022-04-11 19:47 ./usr/lib/python3/dist-packages/examples/sam_md.txt
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/share/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/share/doc/python3-biom-format/
-rw-r--r-- root/root 278 2021-12-03 16:21 ./usr/share/doc/python3-biom-format/README.test
-rw-r--r-- root/root 3800 2022-04-11 19:47 ./usr/share/doc/python3-biom-format/changelog.Debian.gz
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-rw-r--r-- root/root 1613 2021-12-03 16:21 ./usr/share/doc/python3-biom-format/copyright
drwxr-xr-x root/root 0 2022-04-11 19:47 ./usr/share/doc/python3-biom-format/examples/
-rw-r--r-- root/root 1343 2020-11-16 20:23 ./usr/share/doc/python3-biom-format/examples/min_sparse_otu_table.biom
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-rw-r--r-- root/root 555 2020-11-16 20:23 ./usr/share/doc/python3-biom-format/examples/obs_md.txt
-rw-r--r-- root/root 3431 2020-11-16 20:23 ./usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table.biom
-rw-r--r-- root/root 46952 2020-11-16 20:23 ./usr/share/doc/python3-biom-format/examples/rich_sparse_otu_table_hdf5.biom
-rw-r--r-- root/root 244 2020-11-16 20:23 ./usr/share/doc/python3-biom-format/examples/sam_md.txt
-rw-r--r-- root/root 979 2021-12-03 16:21 ./usr/share/doc/python3-biom-format/run-unit-test
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-rw-r--r-- root/root 620 2022-04-11 19:47 ./usr/share/man/man1/biom.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 164548
Build-Time: 167
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1370
Job: python-biom-format_2.1.10-4
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 1559
Source-Version: 2.1.10-4
Space: 164548
Status: successful
Version: 2.1.10-4
--------------------------------------------------------------------------------
Finished at 2022-04-23T13:58:03Z
Build needed 00:25:59, 164548k disk space