python-biom-format →
2.1.10-4 →
armhf → 2022-04-14 09:58:40
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| python-biom-format 2.1.10-4 (armhf) Thu, 14 Apr 2022 09:12:37 +0000 |
+==============================================================================+
Package: python-biom-format
Version: 2.1.10-4
Source Version: 2.1.10-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-4cdc09c9-24e5-418e-8499-3f375920e61b' with '<<CHROOT>>'
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| Update chroot |
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Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.9 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
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Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
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| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8562 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-4 (dsc) [2433 B]
Get:2 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-4 (tar) [8532 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main python-biom-format 2.1.10-4 (diff) [26.9 kB]
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I: NOTICE: Log filtering will replace 'build/python-biom-format-WH5fir/python-biom-format-2.1.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-WH5fir' with '<<BUILDDIR>>'
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| Install build-essential |
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Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-J401Ag/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-J401Ag/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-J401Ag/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
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gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
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W: GPG error: copy:/<<BUILDDIR>>/resolver-J401Ag/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 32 not upgraded.
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debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
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Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
Filtered Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-J401Ag/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-J401Ag/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-J401Ag/apt_archive ./ Release [963 B]
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Reading package lists...
W: copy:/<<BUILDDIR>>/resolver-J401Ag/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-J401Ag/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gcc-12-base gettext gettext-base groff-base
help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1
libbsd0 libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
libjs-jquery-metadata libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblocale-gettext-perl
liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal
libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0
libunicode-escape-perl libunicode-string-perl libwebp7 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db media-types openssl
po-debconf python-babel-localedata python-matplotlib-data python3
python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr
python3-babel python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-click python3-colorama python3-cov-core
python3-coverage python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-docutils python3-fonttools python3-fs
python3-future python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-nose python3-nose2 python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-py python3-pygments
python3-pyparsing python3-pytest python3-pytest-cov python3-requests
python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-toml
python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-zipp
python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev
python3.9-minimal sgml-base sphinx-common tk8.6-blt2.5 ucf unicode-data
x11-common xml-core zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit
python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
libgettextpo-dev groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-venv python-attr-doc
python-coverage-doc python-cycler-doc docutils-doc fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended python-future-doc python-h5py-doc
python-jinja2-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 python-nose-doc python-nose2-doc gfortran
python-numpy-doc python-pandas-doc python3-statsmodels python-pil-doc
subversion python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
python3-cryptography python3-openssl python3-socks python-requests-doc
python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf
imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc
tex-gyre texlive-fonts-recommended texlive-plain-generic texlive-fonts-extra
python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc
binfmt-support python3.9-venv python3.9-doc sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl libpaper-utils python3-bs4 python3-html5lib
python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt
python3-tables python3-olefile
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion blt bsdextrautils
ca-certificates cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gcc-12-base gettext gettext-base groff-base
help2man intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1
libbsd0 libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen
libjs-jquery-metadata libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblocale-gettext-perl
liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7
libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal
libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0
libunicode-escape-perl libunicode-string-perl libwebp7 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxslt1.1 libxss1 m4 man-db media-types openssl
po-debconf python-babel-localedata python-matplotlib-data python3
python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr
python3-babel python3-brotli python3-certifi python3-chardet
python3-charset-normalizer python3-click python3-colorama python3-cov-core
python3-coverage python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-docutils python3-fonttools python3-fs
python3-future python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-importlib-metadata python3-iniconfig
python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools
python3-mpmath python3-nose python3-nose2 python3-numpy python3-packaging
python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
python3-pkg-resources python3-pluggy python3-py python3-pygments
python3-pyparsing python3-pytest python3-pytest-cov python3-requests
python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-toml
python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-zipp
python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev
python3.9-minimal sbuild-build-depends-python-biom-format-dummy sgml-base
sphinx-common tk8.6-blt2.5 ucf unicode-data x11-common xml-core zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 204 newly installed, 0 to remove and 31 not upgraded.
Need to get 120 MB of archives.
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Get:2 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b2 [18.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
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Get:17 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.4-1 [1633 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
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Get:23 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf bash-completion all 1:2.11-6 [234 kB]
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Get:29 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
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Get:32 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
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Get:36 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
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Get:42 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
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Get:46 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.28-3+rpi1 [1456 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-3 [526 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12-20220319-1+rpi1 [207 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.1 [191 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.82.0-2 [317 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.10-2 [55.4 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12-20220319-1+rpi1 [238 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.0-1 [1229 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1 [1246 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-metadata all 12-3 [7660 B]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.1+dfsg-1 [250 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-1 [142 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-10 [24.2 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-6 [150 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.12-1+rpi1 [1419 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.12-1+rpi1 [3013 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.8-1 [21.9 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.4-1 [1625 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.4-1 [1454 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.4-1 [2984 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.8-1 [1072 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-4 [221 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-6+b1 [273 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libunicode-string-perl armhf 2.10-1+b6 [98.7 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libunicode-escape-perl all 0.0.2-4.1 [12.9 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2 [97.1 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2 [105 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.34-4 [218 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.1-2 [2741 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.4-1 [536 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.9.8-1 [1060 B]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.12-1+rpi1 [501 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.8-1 [25.3 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.4-1 [508 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.8-1 [1076 B]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-2 [12.9 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 21.2.0-1 [57.5 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.1-1 [34.8 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.8.0+dfsg.1-7 [100 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b1 [279 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf python3-colorama all 0.4.4-1 [28.5 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf python3-click all 8.0.3-1 [91.9 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf python3-coverage armhf 6.2+dfsg1-2 [151 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf python3-nose2 all 0.9.2-1 [94.1 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf python3-cov-core all 1.15.0-3 [7528 B]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-1 [10.7 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.3-2+b1 [13.0 MB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.9-1 [4227 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.12-1 [89.1 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.8.0-1 [1297 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 4.0.0+dfsg-1 [24.0 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds-8 [296 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 14.0.0-1.1 [7868 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.29.1-2 [791 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf python3-future all 0.18.2-5 [349 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.6.0-2 [688 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.6.0-2 [13.1 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.3.0-1 [6360 B]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.0.1-2 [13.1 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-1 [121 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1 [45.8 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.0.1-1+b1 [429 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.9.12-1 [104 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.0.1-1+b1 [76.9 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.1-2+b1 [7154 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf python3-nose all 1.3.7-8 [133 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-3 [4577 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-3 [2654 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0-1 [19.6 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.11.2+dfsg-2 [744 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf python3-toml all 0.10.2-1 [16.2 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 6.2.5-2 [218 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-cov all 3.0.0-1 [25.7 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.9-1 [116 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.27.1+dfsg-1 [71.9 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-1 [58.5 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 4.5.0-1 [638 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 4.5.0-1 [539 kB]
debconf: delaying package configuration, since apt-utils is not installed
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.9.12-1) ...
Setting up python3-appdirs (1.4.4-2) ...
Setting up python3-imagesize (1.3.0-1) ...
Setting up libhdf5-hl-100:armhf (1.10.7+repack-4+rpi1) ...
Setting up python3-pkg-resources (59.6.0-1.2) ...
Setting up python3-distutils (3.9.12-1) ...
Setting up dh-python (5.20220403) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.9-1) ...
Setting up python3-attr (21.2.0-1) ...
Setting up libxft2:armhf (2.3.4-1) ...
Setting up libpython3-dev:armhf (3.9.8-1) ...
Setting up python3-setuptools (59.6.0-1.2) ...
Setting up python3-py (1.10.0-1) ...
Setting up python3-babel (2.8.0+dfsg.1-7) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-colorama (0.4.4-1) ...
Setting up python3-lz4 (4.0.0+dfsg-1) ...
Setting up python3-charset-normalizer (2.0.6-2) ...
Setting up python3-alabaster (0.7.12-1) ...
Setting up python3-unicodedata2 (14.0.0+ds-8) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up python3-all (3.9.8-1) ...
Setting up python3-coverage (6.2+dfsg1-2) ...
Setting up debhelper (13.6) ...
Setting up python3-nose2 (0.9.2-1) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-click (8.0.3-1) ...
Setting up python3-nose (1.3.7-8) ...
Setting up python3-fs (2.4.12-1) ...
Setting up python3-jinja2 (3.0.3-1) ...
Setting up python3-pygments (2.11.2+dfsg-2) ...
Setting up python3-packaging (21.3-1) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.8-1) ...
Setting up python3-dev (3.9.8-1) ...
Setting up python3-requests (2.27.1+dfsg-1) ...
Setting up python3-numpy (1:1.21.5-1+b1) ...
Setting up python3-future (0.18.2-5) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3-all-dev (3.9.8-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-scipy (1.7.3-2+b1) ...
Setting up python3-importlib-metadata (4.6.4-1) ...
Setting up python3-cov-core (1.15.0-3) ...
Setting up python3-pytest (6.2.5-2) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-pandas-lib:armhf (1.3.5+dfsg-3) ...
Setting up python3-h5py-serial (3.6.0-2) ...
Setting up python3-tk:armhf (3.9.12-1) ...
Setting up python3-pytest-cov (3.0.0-1) ...
Setting up python3-pandas (1.3.5+dfsg-3) ...
Setting up python3-h5py (3.6.0-2) ...
Setting up python3-fonttools (4.29.1-2) ...
Setting up python3-pil.imagetk:armhf (9.0.1-1+b1) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Setting up python3-pil:armhf (9.0.1-1+b1) ...
Setting up python3-matplotlib (3.5.1-2+b1) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.17.1+dfsg-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.17.1+dfsg-2) ...
Setting up python3-sphinx (4.5.0-1) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.2+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.16.14-1+rpi1
Package versions: adduser_3.120 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 bash-completion_1:2.11-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 cython3_0.29.28-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.6 debianutils_5.7-0.1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 docutils-common_0.17.1+dfsg-2 dpkg_1.21.2+rpi1 dpkg-dev_1.21.2+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-12-base_12-20220319-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 help2man_1.49.1 hostname_3.23 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec0_1.0.6-1 libapt-pkg6.0_2.4.3 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-3+rpi1 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 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perl-base_5.34.0-3 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-babel-localedata_2.8.0+dfsg.1-7 python-matplotlib-data_3.5.1-2 python3_3.9.8-1 python3-alabaster_0.7.12-1 python3-all_3.9.8-1 python3-all-dev_3.9.8-1 python3-appdirs_1.4.4-2 python3-attr_21.2.0-1 python3-babel_2.8.0+dfsg.1-7 python3-brotli_1.0.9-2+b1 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-charset-normalizer_2.0.6-2 python3-click_8.0.3-1 python3-colorama_0.4.4-1 python3-cov-core_1.15.0-3 python3-coverage_6.2+dfsg1-2 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.9.8-1 python3-distutils_3.9.12-1 python3-docutils_0.17.1+dfsg-2 python3-fonttools_4.29.1-2 python3-fs_2.4.12-1 python3-future_0.18.2-5 python3-h5py_3.6.0-2 python3-h5py-serial_3.6.0-2 python3-idna_3.3-1 python3-imagesize_1.3.0-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-2 python3-jinja2_3.0.3-1 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.12-1 python3-lxml_4.8.0-1 python3-lz4_4.0.0+dfsg-1 python3-markupsafe_2.0.1-2 python3-matplotlib_3.5.1-2+b1 python3-minimal_3.9.8-1 python3-more-itertools_8.10.0-2 python3-mpmath_1.2.1-2 python3-nose_1.3.7-8 python3-nose2_0.9.2-1 python3-numpy_1:1.21.5-1+b1 python3-packaging_21.3-1 python3-pandas_1.3.5+dfsg-3 python3-pandas-lib_1.3.5+dfsg-3 python3-pil_9.0.1-1+b1 python3-pil.imagetk_9.0.1-1+b1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0-1 python3-py_1.10.0-1 python3-pygments_2.11.2+dfsg-2 python3-pyparsing_2.4.7-1 python3-pytest_6.2.5-2 python3-pytest-cov_3.0.0-1 python3-requests_2.27.1+dfsg-1 python3-roman_3.3-1 python3-scipy_1.7.3-2+b1 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-3 python3-snowballstemmer_2.2.0-1 python3-sphinx_4.5.0-1 python3-sympy_1.9-1 python3-tk_3.9.12-1 python3-toml_0.10.2-1 python3-tz_2022.1-1 python3-ufolib2_0.13.1+dfsg1-1 python3-unicodedata2_14.0.0+ds-8 python3-urllib3_1.26.9-1 python3-zipp_1.0.0-3 python3.10_3.10.4-1 python3.10-dev_3.10.4-1 python3.10-minimal_3.10.4-1 python3.9_3.9.12-1+rpi1 python3.9-dev_3.9.12-1+rpi1 python3.9-minimal_3.9.12-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_4.5.0-1 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2021e-1 ucf_3.0043 unicode-data_14.0.0-1.1 util-linux_2.37.3-1 x11-common_1:7.7+23 xml-core_0.18+nmu1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.EjgUXT9M/trustedkeys.kbx': General error
gpgv: Signature made Mon Apr 11 19:50:29 2022 UTC
gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./python-biom-format_2.1.10-4.dsc
dpkg-source: info: extracting python-biom-format in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-biom-format_2.1.10.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.10-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch
dpkg-source: info: applying sphinx_add_javascript.patch
dpkg-source: info: applying fix_test.patch
dpkg-source: info: applying ignore_failing_hdf5_test.patch
dpkg-source: info: applying python3.10.patch
dpkg-source: info: applying ignore_one_failing_hdf5_test.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4cdc09c9-24e5-418e-8499-3f375920e61b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.10-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --clean -i python{version} -p "3.10 3.9"
I: pybuild base:239: python3.10 setup.py clean
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
I: pybuild base:239: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
pybuild --configure -i python{version} -p "3.10 3.9"
I: pybuild base:239: python3.10 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running config
I: pybuild base:239: python3.9 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# arch
USE_CYTHON=true dh_auto_build
pybuild --build -i python{version} -p "3.10 3.9"
I: pybuild base:239: /usr/bin/python3.10 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_filter.c -o build/temp.linux-armhf-3.10/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_filter.cpython-310-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_transform.c -o build/temp.linux-armhf-3.10/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_transform.cpython-310-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c biom/_subsample.c -o build/temp.linux-armhf-3.10/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/_subsample.cpython-310-arm-linux-gnueabihf.so
I: pybuild base:239: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
adding license file 'COPYING.txt'
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armhf-3.9/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_filter.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.cpython-39-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armhf-3.9/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_transform.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.cpython-39-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armhf-3.9/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from biom/_subsample.c:709:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
Failed to import biom.table.
Possible hints:
* ModuleNotFoundError: No module named 'biom._filter'
* KeyError: 'biom'
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices... done
writing additional pages... search done
copying images... [100%] _static/biom-format.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 6 warnings.
The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v4.5.0
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import biom.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
Failed to import biom.table.
Possible hints:
* KeyError: 'biom'
* ModuleNotFoundError: No module named 'biom._filter'
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [ 8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done
build succeeded, 2 warnings.
The manual pages are in build/man.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p "3.10 3.9"
I: pybuild pybuild:300: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build; python3.10 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.10.4, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
plugins: cov-3.0.0
collected 0 items / 12 errors
==================================== ERRORS ====================================
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_err.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_err.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_parse.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_parse.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_util.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_util.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_add_metadata.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_add_metadata.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_show_install_info.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_show_install_info.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_subset_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_summarize_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_converter.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_converter.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_normalizer.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_table_normalizer.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_uc_processor.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_uc_processor.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_validate_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build/biom/tests/test_cli/test_validate_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
biom/__init__.py:54: in <module>
from .parse import parse_biom_table as parse_table, load_table
biom/parse.py:14: in <module>
import h5py
/usr/lib/python3/dist-packages/h5py/__init__.py:21: in <module>
from . import _debian_h5py_serial as _h5py
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
from . import _errors
E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
---------- coverage: platform linux, python 3.10.4-final-0 -----------
Name Stmts Miss Cover
-------------------------------------------------------------------
biom/__init__.py 16 12 25%
biom/cli/__init__.py 23 23 0%
biom/cli/installation_informer.py 57 57 0%
biom/cli/metadata_adder.py 78 78 0%
biom/cli/metadata_exporter.py 19 19 0%
biom/cli/table_converter.py 84 84 0%
biom/cli/table_head.py 14 14 0%
biom/cli/table_ids.py 10 10 0%
biom/cli/table_normalizer.py 24 24 0%
biom/cli/table_subsetter.py 73 73 0%
biom/cli/table_summarizer.py 67 67 0%
biom/cli/table_validator.py 318 318 0%
biom/cli/uc_processor.py 36 36 0%
biom/cli/util.py 17 17 0%
biom/err.py 122 63 48%
biom/exception.py 26 4 85%
biom/parse.py 304 301 1%
biom/table.py 1610 1477 8%
biom/tests/__init__.py 0 0 100%
biom/tests/long_lines.py 8 8 0%
biom/tests/test_cli/__init__.py 0 0 100%
biom/tests/test_cli/test_add_metadata.py 40 40 0%
biom/tests/test_cli/test_show_install_info.py 8 8 0%
biom/tests/test_cli/test_subset_table.py 59 59 0%
biom/tests/test_cli/test_summarize_table.py 21 21 0%
biom/tests/test_cli/test_table_converter.py 80 80 0%
biom/tests/test_cli/test_table_normalizer.py 22 22 0%
biom/tests/test_cli/test_uc_processor.py 38 38 0%
biom/tests/test_cli/test_validate_table.py 306 306 0%
biom/tests/test_data/__init__.py 0 0 100%
biom/tests/test_err.py 162 162 0%
biom/tests/test_parse.py 229 229 0%
biom/tests/test_table.py 2413 2413 0%
biom/tests/test_util.py 145 145 0%
biom/util.py 185 137 26%
-------------------------------------------------------------------
TOTAL 6614 6345 4%
=========================== short test summary info ============================
ERROR biom/tests/test_err.py
ERROR biom/tests/test_parse.py
ERROR biom/tests/test_table.py
ERROR biom/tests/test_util.py
ERROR biom/tests/test_cli/test_add_metadata.py
ERROR biom/tests/test_cli/test_show_install_info.py
ERROR biom/tests/test_cli/test_subset_table.py
ERROR biom/tests/test_cli/test_summarize_table.py
ERROR biom/tests/test_cli/test_table_converter.py
ERROR biom/tests/test_cli/test_table_normalizer.py
ERROR biom/tests/test_cli/test_uc_processor.py
ERROR biom/tests/test_cli/test_validate_table.py
!!!!!!!!!!!!!!!!!!! Interrupted: 12 errors during collection !!!!!!!!!!!!!!!!!!!
======================== 12 errors in 91.03s (0:01:31) =========================
E: pybuild pybuild:369: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_biom-format/build; python3.10 -m pytest
I: pybuild pybuild:300: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build; python3.9 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.9.12, pytest-6.2.5, py-1.10.0, pluggy-1.0.0
rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
plugins: cov-3.0.0
collected 356 items
biom/tests/test_err.py ..................... [ 5%]
biom/tests/test_parse.py ......................... [ 12%]
biom/tests/test_table.py ............................................... [ 26%]
.................s..................................................sss. [ 46%]
...........s............................................................ [ 66%]
..................................................... [ 81%]
biom/tests/test_util.py ..s................ [ 86%]
biom/tests/test_cli/test_add_metadata.py .... [ 87%]
biom/tests/test_cli/test_show_install_info.py . [ 88%]
biom/tests/test_cli/test_subset_table.py ..... [ 89%]
biom/tests/test_cli/test_summarize_table.py .. [ 90%]
biom/tests/test_cli/test_table_converter.py ...... [ 91%]
biom/tests/test_cli/test_table_normalizer.py . [ 92%]
biom/tests/test_cli/test_uc_processor.py ...... [ 93%]
biom/tests/test_cli/test_validate_table.py ...................... [100%]
=============================== warnings summary ===============================
biom/tests/test_table.py:19
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py:19: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead.
import pandas.util.testing as pdt
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:125: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_arrayXarray(i, j, x)
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py:4059: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
data = np.hstack(h5_data[start:end]
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/table.py:4061: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
indices = np.hstack(h5_indices[start:end]
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727
/usr/lib/python3/dist-packages/scipy/sparse/_index.py:82: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
self._set_intXint(row, col, x.flat[0])
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:88: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num samples: ' + locale.format('%d', num_samples,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:90: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Num observations: ' + locale.format('%d',
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:95: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('Total count: ' + locale.format('%d', total_count,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:110: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True))
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True))
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Median: ' + locale.format('%1.3f', median_counts,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:114: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Mean: ' + locale.format('%1.3f', mean_counts,
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:116: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append(' Std. dev.: ' + locale.format('%1.3f',
.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli/table_summarizer.py:143: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True))
-- Docs: https://docs.pytest.org/en/stable/warnings.html
---------- coverage: platform linux, python 3.9.12-final-0 -----------
Name Stmts Miss Cover
-------------------------------------------------------------------
biom/__init__.py 16 0 100%
biom/cli/__init__.py 23 4 83%
biom/cli/installation_informer.py 57 11 81%
biom/cli/metadata_adder.py 78 29 63%
biom/cli/metadata_exporter.py 19 10 47%
biom/cli/table_converter.py 84 19 77%
biom/cli/table_head.py 14 5 64%
biom/cli/table_ids.py 10 3 70%
biom/cli/table_normalizer.py 24 5 79%
biom/cli/table_subsetter.py 73 19 74%
biom/cli/table_summarizer.py 67 15 78%
biom/cli/table_validator.py 318 65 80%
biom/cli/uc_processor.py 36 7 81%
biom/cli/util.py 17 5 71%
biom/err.py 122 1 99%
biom/exception.py 26 0 100%
biom/parse.py 304 66 78%
biom/table.py 1608 148 91%
biom/tests/__init__.py 0 0 100%
biom/tests/long_lines.py 8 0 100%
biom/tests/test_cli/__init__.py 0 0 100%
biom/tests/test_cli/test_add_metadata.py 40 1 98%
biom/tests/test_cli/test_show_install_info.py 8 1 88%
biom/tests/test_cli/test_subset_table.py 59 1 98%
biom/tests/test_cli/test_summarize_table.py 21 1 95%
biom/tests/test_cli/test_table_converter.py 80 1 99%
biom/tests/test_cli/test_table_normalizer.py 22 1 95%
biom/tests/test_cli/test_uc_processor.py 38 1 97%
biom/tests/test_cli/test_validate_table.py 306 1 99%
biom/tests/test_data/__init__.py 0 0 100%
biom/tests/test_err.py 162 4 98%
biom/tests/test_parse.py 229 1 99%
biom/tests/test_table.py 2413 34 99%
biom/tests/test_util.py 145 6 96%
biom/util.py 184 30 84%
-------------------------------------------------------------------
TOTAL 6611 495 93%
============ 350 passed, 6 skipped, 46 warnings in 92.17s (0:01:32) ============
rm -fr -- /tmp/dh-xdg-rundir-LSQhLfkQ
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13
make: *** [debian/rules:19: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2022-04-14T09:58:34Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 414
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 2279
Job: python-biom-format_2.1.10-4
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 2757
Source-Version: 2.1.10-4
Space: 0
Status: failed
Version: 2.1.10-4
--------------------------------------------------------------------------------
Finished at 2022-04-14T09:58:34Z
Build needed 00:00:00, 0k disc space