Build log for python-biom-format (2.1.10-1) on armhf

python-biom-format → 2.1.10-1 → armhf → 2020-11-23 07:05:31

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| python-biom-format 2.1.10-1 (armhf)          Mon, 23 Nov 2020 06:47:17 +0000 |
+==============================================================================+

Package: python-biom-format
Version: 2.1.10-1
Source Version: 2.1.10-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-c042c02e-1eb4-44c3-be30-e96878e4ac2b' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 9s (2705 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/python-biom-format.git
Please use:
git clone https://salsa.debian.org/med-team/python-biom-format.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 8545 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.10-1 (dsc) [2600 B]
Get:2 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.10-1 (tar) [8532 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main python-biom-format 2.1.10-1 (diff) [10.4 kB]
Fetched 8545 kB in 2s (4945 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/python-biom-format-r5YCOS/python-biom-format-2.1.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-biom-format-r5YCOS' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Wajs77/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Wajs77/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Wajs77/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9475 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (66.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12594 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any-amd64 any-arm64 any-i386 any-mips64el any-ppc64el armel armhf mipsel all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
Filtered Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-future, python3-h5py, python3-nose, python3-numpy, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'sbuild-build-depends-python-biom-format-dummy' in '/<<BUILDDIR>>/resolver-Wajs77/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-python-biom-format-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Sources [611 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ Packages [682 B]
Fetched 2626 B in 0s (11.6 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install python-biom-format build dependencies (apt-based resolver)
------------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
  docutils-common dwz file fonts-lyx gettext gettext-base groff-base help2man
  intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0
  libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys
  libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter
  libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  liblapack3 liblbfgsb0 liblcms2-2 liblocale-gettext-perl liblzf1 libmagic-mgc
  libmagic1 libnsl2 libpipeline1 libpng16-16 libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal
  libpython3.8-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
  libpython3.9-stdlib libsigsegv2 libssl1.1 libsub-override-perl libsz2
  libtiff5 libtirpc-common libtirpc3 libtool libuchardet0 libwebp6
  libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap
  man-db media-types mime-support node-jquery openssl po-debconf
  python-babel-localedata python-matplotlib-data python3 python3-alabaster
  python3-all python3-all-dev python3-atomicwrites python3-attr python3-babel
  python3-certifi python3-chardet python3-click python3-colorama
  python3-cov-core python3-coverage python3-cycler python3-dateutil
  python3-decorator python3-dev python3-distutils python3-docutils
  python3-future python3-h5py python3-h5py-serial python3-idna
  python3-imagesize python3-importlib-metadata python3-jinja2
  python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib
  python3-minimal python3-more-itertools python3-nose python3-nose2
  python3-numpy python3-packaging python3-pandas python3-pandas-lib
  python3-pil python3-pkg-resources python3-pluggy python3-py python3-pygments
  python3-pyparsing python3-pytest python3-pytest-cov python3-requests
  python3-roman python3-scipy python3-setuptools python3-six
  python3-snowballstemmer python3-sphinx python3-tz python3-urllib3
  python3-wcwidth python3-zipp python3.8 python3.8-dev python3.8-minimal
  python3.9 python3.9-dev python3.9-minimal sgml-base sphinx-common
  ttf-bitstream-vera xml-core zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cython-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user
  libjs-jquery-ui-docs liblcms2-utils libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc
  python-coverage-doc python-cycler-doc docutils-doc fonts-linuxlibertine
  | ttf-linux-libertine texlive-lang-french texlive-latex-base
  texlive-latex-recommended python-future-doc python-h5py-doc
  python-jinja2-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3
  librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi
  python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra ttf-staypuft python-nose-doc
  python-nose2-doc gfortran python-numpy-doc python3-numpy-dbg
  python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg
  subversion python-pygments-doc python-pyparsing-doc python3-cryptography
  python3-openssl python3-socks python-requests-doc python-scipy-doc
  python-setuptools-doc python3-stemmer fonts-freefont-otf imagemagick-6.q16
  latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc
  texlive-fonts-recommended texlive-plain-generic python3.8-venv python3.8-doc
  binfmt-support python3.9-venv python3.9-doc sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common krb5-locales libltdl-dev
  libmail-sendmail-perl libpaper-utils python3-tk python3-bottleneck
  python3-numexpr python3-odf python3-openpyxl python3-xlrd python3-xlwt
  python3-bs4 python3-html5lib python3-lxml python3-tables python3-olefile
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
  docutils-common dwz file fonts-lyx gettext gettext-base groff-base help2man
  intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu67 libimagequant0
  libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-hotkeys
  libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter
  libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc
  libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  liblapack3 liblbfgsb0 liblcms2-2 liblocale-gettext-perl liblzf1 libmagic-mgc
  libmagic1 libnsl2 libpipeline1 libpng16-16 libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal
  libpython3.8-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
  libpython3.9-stdlib libsigsegv2 libssl1.1 libsub-override-perl libsz2
  libtiff5 libtirpc-common libtirpc3 libtool libuchardet0 libwebp6
  libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap
  man-db media-types mime-support node-jquery openssl po-debconf
  python-babel-localedata python-matplotlib-data python3 python3-alabaster
  python3-all python3-all-dev python3-atomicwrites python3-attr python3-babel
  python3-certifi python3-chardet python3-click python3-colorama
  python3-cov-core python3-coverage python3-cycler python3-dateutil
  python3-decorator python3-dev python3-distutils python3-docutils
  python3-future python3-h5py python3-h5py-serial python3-idna
  python3-imagesize python3-importlib-metadata python3-jinja2
  python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib
  python3-minimal python3-more-itertools python3-nose python3-nose2
  python3-numpy python3-packaging python3-pandas python3-pandas-lib
  python3-pil python3-pkg-resources python3-pluggy python3-py python3-pygments
  python3-pyparsing python3-pytest python3-pytest-cov python3-requests
  python3-roman python3-scipy python3-setuptools python3-six
  python3-snowballstemmer python3-sphinx python3-tz python3-urllib3
  python3-wcwidth python3-zipp python3.8 python3.8-dev python3.8-minimal
  python3.9 python3.9-dev python3.9-minimal
  sbuild-build-depends-python-biom-format-dummy sgml-base sphinx-common
  ttf-bitstream-vera xml-core zlib1g-dev
0 upgraded, 170 newly installed, 0 to remove and 22 not upgraded.
Need to get 89.0 MB of archives.
After this operation, 364 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Wajs77/apt_archive ./ sbuild-build-depends-python-biom-format-dummy 0.invalid.0 [972 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b1 [18.3 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1h-1 [1271 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.6-1 [752 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.6-1 [1552 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.6-1 [37.7 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.6-1 [1654 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.6-1 [422 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.6-1 [20.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.6-1 [64.0 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.0-5+rpi1 [788 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.0-5+rpi1 [1628 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg+~3.5.4-1 [390 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.4-1 [3844 B]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2 [11.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf bash-completion all 1:2.11-2 [234 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1h-1 [812 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-3 [1258 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.2-1 [1176 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.2 [578 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf docutils-common all 0.16+dfsg-3 [129 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.5.2-1 [200 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.16 [181 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-4 [345 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-16+rpi1 [232 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-metadata all 12-1.1 [7420 B]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-1 [185 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-1 [6178 B]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-7 [232 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 3.3.1-1 [124 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf liblzf1 armhf 3.6-2 [9092 B]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libtirpc-common all 1.2.6-3 [13.3 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libtirpc3 armhf 1.2.6-3 [71.2 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libnsl2 armhf 1.3.0-2 [33.2 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.6-1 [1343 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.6-1 [2887 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.6-1 [21.1 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.0-5+rpi1 [1654 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.0-5+rpi1 [1411 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.0-5+rpi1 [3053 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.6-1 [1072 B]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-4 [4996 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.3.2-2 [4153 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-alabaster all 0.7.8-1.1 [18.6 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.0-5+rpi1 [455 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.6-1 [1060 B]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.6-1 [519 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.6-1 [1164 B]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.0-5+rpi1 [501 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.6-1 [1076 B]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-atomicwrites all 1.4.0-1 [10.2 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-attr all 20.3.0-1 [52.9 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2020.4-2 [34.8 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-babel all 2.8.0+dfsg.1-4 [99.9 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-colorama all 0.4.3-1 [27.8 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-click all 7.1.2-1 [75.7 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-coverage armhf 5.1+dfsg.1-2 [167 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-2 [16.9 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-nose2 all 0.9.2-1 [94.1 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-cov-core all 1.15.0-3 [7528 B]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.8.1-4 [81.6 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf python3-roman all 2.0.0-5 [9064 B]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-docutils all 0.16+dfsg-3 [384 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf python3-future all 0.18.2-4 [348 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1+b1 [4142 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py-serial armhf 2.10.0-9 [596 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py all 2.10.0-9 [11.4 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf python3-imagesize all 1.2.0-2 [5824 B]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf python3-markupsafe armhf 1.1.1-1+b1 [14.8 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3-jinja2 all 2.11.2-1 [113 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.3.1-1 [272 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 8.0.1-1 [405 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.3.2-2 [4103 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf python3-nose all 1.3.7-7 [133 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.4-1 [30.4 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 1.1.4+dfsg-1 [2964 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 1.1.4+dfsg-1 [2092 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf python3-pluggy all 0.13.0-5 [22.1 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf python3-py all 1.9.0-2 [94.1 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf python3-pygments all 2.3.1+dfsg-4 [596 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest all 4.6.11-1 [268 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-isonscreen all 1.2.0-1 [3046 B]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf python3-pytest-cov all 2.8.1-1 [22.1 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.11-1 [107 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.24.0+dfsg-1 [71.7 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.5.2-2 [10.2 MB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf python3-snowballstemmer all 2.0.0-2 [58.2 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf sphinx-common all 3.3.1-1 [575 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf python3-sphinx all 3.3.1-1 [537 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 89.0 MB in 20s (4424 kB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 12594 files and directories currently installed.)
Preparing to unpack .../0-liblocale-gettext-perl_1.07-4+b1_armhf.deb ...
Unpacking liblocale-gettext-perl (1.07-4+b1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../2-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../4-man-db_2.9.3-2_armhf.deb ...
Unpacking man-db (2.9.3-2) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../5-libssl1.1_1.1.1h-1_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1h-1) ...
Selecting previously unselected package libpython3.8-minimal:armhf.
Preparing to unpack .../6-libpython3.8-minimal_3.8.6-1_armhf.deb ...
Unpacking libpython3.8-minimal:armhf (3.8.6-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../7-libexpat1_2.2.10-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.10-1) ...
Selecting previously unselected package python3.8-minimal.
Preparing to unpack .../8-python3.8-minimal_3.8.6-1_armhf.deb ...
Unpacking python3.8-minimal (3.8.6-1) ...
Setting up libssl1.1:armhf (1.1.1h-1) ...
Setting up libpython3.8-minimal:armhf (3.8.6-1) ...
Setting up libexpat1:armhf (2.2.10-1) ...
Setting up python3.8-minimal (3.8.6-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13437 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.8.6-1_armhf.deb ...
Unpacking python3-minimal (3.8.6-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_1.0.1_all.deb ...
Unpacking media-types (1.0.1) ...
Selecting previously unselected package mailcap.
Preparing to unpack .../2-mailcap_3.67_all.deb ...
Unpacking mailcap (3.67) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../3-mime-support_3.66_all.deb ...
Unpacking mime-support (3.66) ...
Selecting previously unselected package libpython3.8-stdlib:armhf.
Preparing to unpack .../4-libpython3.8-stdlib_3.8.6-1_armhf.deb ...
Unpacking libpython3.8-stdlib:armhf (3.8.6-1) ...
Selecting previously unselected package python3.8.
Preparing to unpack .../5-python3.8_3.8.6-1_armhf.deb ...
Unpacking python3.8 (3.8.6-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../6-libpython3-stdlib_3.8.6-1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.8.6-1) ...
Setting up python3-minimal (3.8.6-1) ...
Selecting previously unselected package python3.
(Reading database ... 13839 files and directories currently installed.)
Preparing to unpack .../000-python3_3.8.6-1_armhf.deb ...
Unpacking python3 (3.8.6-1) ...
Selecting previously unselected package libpython3.9-minimal:armhf.
Preparing to unpack .../001-libpython3.9-minimal_3.9.0-5+rpi1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.0-5+rpi1) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../002-python3.9-minimal_3.9.0-5+rpi1_armhf.deb ...
Unpacking python3.9-minimal (3.9.0-5+rpi1) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../003-sgml-base_1.30_all.deb ...
Unpacking sgml-base (1.30) ...
Selecting previously unselected package node-jquery.
Preparing to unpack .../004-node-jquery_3.5.1+dfsg+~3.5.4-1_all.deb ...
Unpacking node-jquery (3.5.1+dfsg+~3.5.4-1) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../005-libjs-jquery_3.5.1+dfsg+~3.5.4-1_all.deb ...
Unpacking libjs-jquery (3.5.1+dfsg+~3.5.4-1) ...
Selecting previously unselected package libjs-jquery-hotkeys.
Preparing to unpack .../006-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2_all.deb ...
Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2) ...
Selecting previously unselected package bash-completion.
Preparing to unpack .../007-bash-completion_1%3a2.11-2_all.deb ...
Unpacking bash-completion (1:2.11-2) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../008-libmagic-mgc_1%3a5.38-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-5) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../009-libmagic1_1%3a5.38-5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-5) ...
Selecting previously unselected package file.
Preparing to unpack .../010-file_1%3a5.38-5_armhf.deb ...
Unpacking file (1:5.38-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../011-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../012-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../013-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../014-autoconf_2.69-11.1_all.deb ...
Unpacking autoconf (2.69-11.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../015-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../016-automake_1%3a1.16.2-4_all.deb ...
Unpacking automake (1:1.16.2-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../017-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package openssl.
Preparing to unpack .../018-openssl_1.1.1h-1_armhf.deb ...
Unpacking openssl (1.1.1h-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../019-ca-certificates_20200601_all.deb ...
Unpacking ca-certificates (20200601) ...
Selecting previously unselected package cython3.
Preparing to unpack .../020-cython3_0.29.21-3_armhf.deb ...
Unpacking cython3 (0.29.21-3) ...
Selecting previously unselected package libtool.
Preparing to unpack .../021-libtool_2.4.6-14_all.deb ...
Unpacking libtool (2.4.6-14) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../022-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../023-libdebhelper-perl_13.2.1_all.deb ...
Unpacking libdebhelper-perl (13.2.1) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../025-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../027-dh-strip-nondeterminism_1.9.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.9.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../028-libelf1_0.182-1_armhf.deb ...
Unpacking libelf1:armhf (0.182-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../029-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../030-libglib2.0-0_2.66.2-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.66.2-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../031-libicu67_67.1-4_armhf.deb ...
Unpacking libicu67:armhf (67.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../032-libxml2_2.9.10+dfsg-6.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../033-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../034-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../035-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../036-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../037-debhelper_13.2.1_all.deb ...
Unpacking debhelper (13.2.1) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../038-python3-lib2to3_3.8.6-1_all.deb ...
Unpacking python3-lib2to3 (3.8.6-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../039-python3-distutils_3.8.6-1_all.deb ...
Unpacking python3-distutils (3.8.6-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../040-dh-python_4.20201102_all.deb ...
Unpacking dh-python (4.20201102) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../041-xml-core_0.18+nmu1_all.deb ...
Unpacking xml-core (0.18+nmu1) ...
Selecting previously unselected package docutils-common.
Preparing to unpack .../042-docutils-common_0.16+dfsg-3_all.deb ...
Unpacking docutils-common (0.16+dfsg-3) ...
Selecting previously unselected package fonts-lyx.
Preparing to unpack .../043-fonts-lyx_2.3.5.2-1_all.deb ...
Unpacking fonts-lyx (2.3.5.2-1) ...
Selecting previously unselected package help2man.
Preparing to unpack .../044-help2man_1.47.16_armhf.deb ...
Unpacking help2man (1.47.16) ...
Selecting previously unselected package libaec0:armhf.
Preparing to unpack .../045-libaec0_1.0.4-1_armhf.deb ...
Unpacking libaec0:armhf (1.0.4-1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../046-libblas3_3.9.0-3_armhf.deb ...
Unpacking libblas3:armhf (3.9.0-3) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../047-libbrotli1_1.0.9-2_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../048-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../049-libexpat1-dev_2.2.10-1_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.2.10-1) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../050-libpng16-16_1.6.37-3_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.37-3) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../051-libfreetype6_2.10.2+dfsg-4_armhf.deb ...
Unpacking libfreetype6:armhf (2.10.2+dfsg-4) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../052-libgfortran5_10.2.0-16+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (10.2.0-16+rpi1) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../053-libkrb5support0_1.17-10+b3_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-10+b3) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../054-libk5crypto3_1.17-10+b3_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-10+b3) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../055-libkeyutils1_1.6.1-2_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6.1-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../056-libkrb5-3_1.17-10+b3_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-10+b3) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../057-libgssapi-krb5-2_1.17-10+b3_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-10+b3) ...
Selecting previously unselected package libsz2:armhf.
Preparing to unpack .../058-libsz2_1.0.4-1_armhf.deb ...
Unpacking libsz2:armhf (1.0.4-1) ...
Selecting previously unselected package libhdf5-103-1:armhf.
Preparing to unpack .../059-libhdf5-103-1_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-103-1:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libhdf5-hl-100:armhf.
Preparing to unpack .../060-libhdf5-hl-100_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libimagequant0:armhf.
Preparing to unpack .../061-libimagequant0_2.12.2-1.1_armhf.deb ...
Unpacking libimagequant0:armhf (2.12.2-1.1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../062-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../063-libjpeg62-turbo_1%3a2.0.5-1.1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Selecting previously unselected package libjs-jquery-metadata.
Preparing to unpack .../064-libjs-jquery-metadata_12-1.1_all.deb ...
Unpacking libjs-jquery-metadata (12-1.1) ...
Selecting previously unselected package libjs-jquery-tablesorter.
Preparing to unpack .../065-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-1_all.deb ...
Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ...
Selecting previously unselected package libjs-jquery-throttle-debounce.
Preparing to unpack .../066-libjs-jquery-throttle-debounce_1.1+dfsg.1-1_all.deb ...
Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-1) ...
Selecting previously unselected package libjs-jquery-ui.
Preparing to unpack .../067-libjs-jquery-ui_1.12.1+dfsg-7_all.deb ...
Unpacking libjs-jquery-ui (1.12.1+dfsg-7) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../068-libjs-underscore_1.9.1~dfsg-1_all.deb ...
Unpacking libjs-underscore (1.9.1~dfsg-1) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../069-libjs-sphinxdoc_3.3.1-1_all.deb ...
Unpacking libjs-sphinxdoc (3.3.1-1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../070-liblapack3_3.9.0-3_armhf.deb ...
Unpacking liblapack3:armhf (3.9.0-3) ...
Selecting previously unselected package liblbfgsb0:armhf.
Preparing to unpack .../071-liblbfgsb0_3.0+dfsg.3-9_armhf.deb ...
Unpacking liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../072-liblcms2-2_2.9-4_armhf.deb ...
Unpacking liblcms2-2:armhf (2.9-4) ...
Selecting previously unselected package liblzf1:armhf.
Preparing to unpack .../073-liblzf1_3.6-2_armhf.deb ...
Unpacking liblzf1:armhf (3.6-2) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../074-libtirpc-common_1.2.6-3_all.deb ...
Unpacking libtirpc-common (1.2.6-3) ...
Selecting previously unselected package libtirpc3:armhf.
Preparing to unpack .../075-libtirpc3_1.2.6-3_armhf.deb ...
Unpacking libtirpc3:armhf (1.2.6-3) ...
Selecting previously unselected package libnsl2:armhf.
Preparing to unpack .../076-libnsl2_1.3.0-2_armhf.deb ...
Unpacking libnsl2:armhf (1.3.0-2) ...
Selecting previously unselected package libpython3.8:armhf.
Preparing to unpack .../077-libpython3.8_3.8.6-1_armhf.deb ...
Unpacking libpython3.8:armhf (3.8.6-1) ...
Selecting previously unselected package libpython3.8-dev:armhf.
Preparing to unpack .../078-libpython3.8-dev_3.8.6-1_armhf.deb ...
Unpacking libpython3.8-dev:armhf (3.8.6-1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../079-libpython3-dev_3.8.6-1_armhf.deb ...
Unpacking libpython3-dev:armhf (3.8.6-1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../080-libpython3.9-stdlib_3.9.0-5+rpi1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.0-5+rpi1) ...
Selecting previously unselected package libpython3.9:armhf.
Preparing to unpack .../081-libpython3.9_3.9.0-5+rpi1_armhf.deb ...
Unpacking libpython3.9:armhf (3.9.0-5+rpi1) ...
Selecting previously unselected package libpython3.9-dev:armhf.
Preparing to unpack .../082-libpython3.9-dev_3.9.0-5+rpi1_armhf.deb ...
Unpacking libpython3.9-dev:armhf (3.9.0-5+rpi1) ...
Selecting previously unselected package libpython3-all-dev:armhf.
Preparing to unpack .../083-libpython3-all-dev_3.8.6-1_armhf.deb ...
Unpacking libpython3-all-dev:armhf (3.8.6-1) ...
Selecting previously unselected package libwebp6:armhf.
Preparing to unpack .../084-libwebp6_0.6.1-2_armhf.deb ...
Unpacking libwebp6:armhf (0.6.1-2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../085-libtiff5_4.1.0+git191117-2_armhf.deb ...
Unpacking libtiff5:armhf (4.1.0+git191117-2) ...
Selecting previously unselected package libwebpdemux2:armhf.
Preparing to unpack .../086-libwebpdemux2_0.6.1-2_armhf.deb ...
Unpacking libwebpdemux2:armhf (0.6.1-2) ...
Selecting previously unselected package libwebpmux3:armhf.
Preparing to unpack .../087-libwebpmux3_0.6.1-2_armhf.deb ...
Unpacking libwebpmux3:armhf (0.6.1-2) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../088-libxau6_1%3a1.0.8-1+b2_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1+b2) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../089-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../090-libxcb1_1.14-2_armhf.deb ...
Unpacking libxcb1:armhf (1.14-2) ...
Selecting previously unselected package python-babel-localedata.
Preparing to unpack .../091-python-babel-localedata_2.8.0+dfsg.1-4_all.deb ...
Unpacking python-babel-localedata (2.8.0+dfsg.1-4) ...
Selecting previously unselected package ttf-bitstream-vera.
Preparing to unpack .../092-ttf-bitstream-vera_1.10-8_all.deb ...
Unpacking ttf-bitstream-vera (1.10-8) ...
Selecting previously unselected package python-matplotlib-data.
Preparing to unpack .../093-python-matplotlib-data_3.3.2-2_all.deb ...
Unpacking python-matplotlib-data (3.3.2-2) ...
Selecting previously unselected package python3-alabaster.
Preparing to unpack .../094-python3-alabaster_0.7.8-1.1_all.deb ...
Unpacking python3-alabaster (0.7.8-1.1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../095-python3.9_3.9.0-5+rpi1_armhf.deb ...
Unpacking python3.9 (3.9.0-5+rpi1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../096-python3-all_3.8.6-1_armhf.deb ...
Unpacking python3-all (3.8.6-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../097-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package python3.8-dev.
Preparing to unpack .../098-python3.8-dev_3.8.6-1_armhf.deb ...
Unpacking python3.8-dev (3.8.6-1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../099-python3-dev_3.8.6-1_armhf.deb ...
Unpacking python3-dev (3.8.6-1) ...
Selecting previously unselected package python3.9-dev.
Preparing to unpack .../100-python3.9-dev_3.9.0-5+rpi1_armhf.deb ...
Unpacking python3.9-dev (3.9.0-5+rpi1) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../101-python3-all-dev_3.8.6-1_armhf.deb ...
Unpacking python3-all-dev (3.8.6-1) ...
Selecting previously unselected package python3-atomicwrites.
Preparing to unpack .../102-python3-atomicwrites_1.4.0-1_all.deb ...
Unpacking python3-atomicwrites (1.4.0-1) ...
Selecting previously unselected package python3-attr.
Preparing to unpack .../103-python3-attr_20.3.0-1_all.deb ...
Unpacking python3-attr (20.3.0-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../104-python3-pkg-resources_50.3.0-1_all.deb ...
Unpacking python3-pkg-resources (50.3.0-1) ...
Selecting previously unselected package python3-tz.
Preparing to unpack .../105-python3-tz_2020.4-2_all.deb ...
Unpacking python3-tz (2020.4-2) ...
Selecting previously unselected package python3-babel.
Preparing to unpack .../106-python3-babel_2.8.0+dfsg.1-4_all.deb ...
Unpacking python3-babel (2.8.0+dfsg.1-4) ...
Selecting previously unselected package python3-certifi.
Preparing to unpack .../107-python3-certifi_2020.6.20-1_all.deb ...
Unpacking python3-certifi (2020.6.20-1) ...
Selecting previously unselected package python3-chardet.
Preparing to unpack .../108-python3-chardet_3.0.4-7_all.deb ...
Unpacking python3-chardet (3.0.4-7) ...
Selecting previously unselected package python3-colorama.
Preparing to unpack .../109-python3-colorama_0.4.3-1_all.deb ...
Unpacking python3-colorama (0.4.3-1) ...
Selecting previously unselected package python3-click.
Preparing to unpack .../110-python3-click_7.1.2-1_all.deb ...
Unpacking python3-click (7.1.2-1) ...
Selecting previously unselected package python3-coverage.
Preparing to unpack .../111-python3-coverage_5.1+dfsg.1-2_armhf.deb ...
Unpacking python3-coverage (5.1+dfsg.1-2) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../112-python3-six_1.15.0-2_all.deb ...
Unpacking python3-six (1.15.0-2) ...
Selecting previously unselected package python3-nose2.
Preparing to unpack .../113-python3-nose2_0.9.2-1_all.deb ...
Unpacking python3-nose2 (0.9.2-1) ...
Selecting previously unselected package python3-cov-core.
Preparing to unpack .../114-python3-cov-core_1.15.0-3_all.deb ...
Unpacking python3-cov-core (1.15.0-3) ...
Selecting previously unselected package python3-cycler.
Preparing to unpack .../115-python3-cycler_0.10.0-3_all.deb ...
Unpacking python3-cycler (0.10.0-3) ...
Selecting previously unselected package python3-dateutil.
Preparing to unpack .../116-python3-dateutil_2.8.1-4_all.deb ...
Unpacking python3-dateutil (2.8.1-4) ...
Selecting previously unselected package python3-decorator.
Preparing to unpack .../117-python3-decorator_4.4.2-2_all.deb ...
Unpacking python3-decorator (4.4.2-2) ...
Selecting previously unselected package python3-roman.
Preparing to unpack .../118-python3-roman_2.0.0-5_all.deb ...
Unpacking python3-roman (2.0.0-5) ...
Selecting previously unselected package python3-docutils.
Preparing to unpack .../119-python3-docutils_0.16+dfsg-3_all.deb ...
Unpacking python3-docutils (0.16+dfsg-3) ...
Selecting previously unselected package python3-future.
Preparing to unpack .../120-python3-future_0.18.2-4_all.deb ...
Unpacking python3-future (0.18.2-4) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../121-python3-numpy_1%3a1.19.4-1+b1_armhf.deb ...
Unpacking python3-numpy (1:1.19.4-1+b1) ...
Selecting previously unselected package python3-h5py-serial.
Preparing to unpack .../122-python3-h5py-serial_2.10.0-9_armhf.deb ...
Unpacking python3-h5py-serial (2.10.0-9) ...
Selecting previously unselected package python3-h5py.
Preparing to unpack .../123-python3-h5py_2.10.0-9_all.deb ...
Unpacking python3-h5py (2.10.0-9) ...
Selecting previously unselected package python3-idna.
Preparing to unpack .../124-python3-idna_2.10-1_all.deb ...
Unpacking python3-idna (2.10-1) ...
Selecting previously unselected package python3-imagesize.
Preparing to unpack .../125-python3-imagesize_1.2.0-2_all.deb ...
Unpacking python3-imagesize (1.2.0-2) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../126-python3-more-itertools_4.2.0-3_all.deb ...
Unpacking python3-more-itertools (4.2.0-3) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../127-python3-zipp_1.0.0-3_all.deb ...
Unpacking python3-zipp (1.0.0-3) ...
Selecting previously unselected package python3-importlib-metadata.
Preparing to unpack .../128-python3-importlib-metadata_1.6.0-2_all.deb ...
Unpacking python3-importlib-metadata (1.6.0-2) ...
Selecting previously unselected package python3-markupsafe.
Preparing to unpack .../129-python3-markupsafe_1.1.1-1+b1_armhf.deb ...
Unpacking python3-markupsafe (1.1.1-1+b1) ...
Selecting previously unselected package python3-jinja2.
Preparing to unpack .../130-python3-jinja2_2.11.2-1_all.deb ...
Unpacking python3-jinja2 (2.11.2-1) ...
Selecting previously unselected package python3-kiwisolver.
Preparing to unpack .../131-python3-kiwisolver_1.3.1-1_armhf.deb ...
Unpacking python3-kiwisolver (1.3.1-1) ...
Selecting previously unselected package python3-pyparsing.
Preparing to unpack .../132-python3-pyparsing_2.4.7-1_all.deb ...
Unpacking python3-pyparsing (2.4.7-1) ...
Selecting previously unselected package python3-pil:armhf.
Preparing to unpack .../133-python3-pil_8.0.1-1_armhf.deb ...
Unpacking python3-pil:armhf (8.0.1-1) ...
Selecting previously unselected package python3-matplotlib.
Preparing to unpack .../134-python3-matplotlib_3.3.2-2_armhf.deb ...
Unpacking python3-matplotlib (3.3.2-2) ...
Selecting previously unselected package python3-nose.
Preparing to unpack .../135-python3-nose_1.3.7-7_all.deb ...
Unpacking python3-nose (1.3.7-7) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../136-python3-packaging_20.4-1_all.deb ...
Unpacking python3-packaging (20.4-1) ...
Selecting previously unselected package python3-pandas-lib:armhf.
Preparing to unpack .../137-python3-pandas-lib_1.1.4+dfsg-1_armhf.deb ...
Unpacking python3-pandas-lib:armhf (1.1.4+dfsg-1) ...
Selecting previously unselected package python3-pandas.
Preparing to unpack .../138-python3-pandas_1.1.4+dfsg-1_all.deb ...
Unpacking python3-pandas (1.1.4+dfsg-1) ...
Selecting previously unselected package python3-pluggy.
Preparing to unpack .../139-python3-pluggy_0.13.0-5_all.deb ...
Unpacking python3-pluggy (0.13.0-5) ...
Selecting previously unselected package python3-py.
Preparing to unpack .../140-python3-py_1.9.0-2_all.deb ...
Unpacking python3-py (1.9.0-2) ...
Selecting previously unselected package python3-pygments.
Preparing to unpack .../141-python3-pygments_2.3.1+dfsg-4_all.deb ...
Unpacking python3-pygments (2.3.1+dfsg-4) ...
Selecting previously unselected package python3-wcwidth.
Preparing to unpack .../142-python3-wcwidth_0.1.9+dfsg1-2_all.deb ...
Unpacking python3-wcwidth (0.1.9+dfsg1-2) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../143-python3-pytest_4.6.11-1_all.deb ...
Unpacking python3-pytest (4.6.11-1) ...
Selecting previously unselected package libjs-jquery-isonscreen.
Preparing to unpack .../144-libjs-jquery-isonscreen_1.2.0-1_all.deb ...
Unpacking libjs-jquery-isonscreen (1.2.0-1) ...
Selecting previously unselected package python3-pytest-cov.
Preparing to unpack .../145-python3-pytest-cov_2.8.1-1_all.deb ...
Unpacking python3-pytest-cov (2.8.1-1) ...
Selecting previously unselected package python3-urllib3.
Preparing to unpack .../146-python3-urllib3_1.25.11-1_all.deb ...
Unpacking python3-urllib3 (1.25.11-1) ...
Selecting previously unselected package python3-requests.
Preparing to unpack .../147-python3-requests_2.24.0+dfsg-1_all.deb ...
Unpacking python3-requests (2.24.0+dfsg-1) ...
Selecting previously unselected package python3-scipy.
Preparing to unpack .../148-python3-scipy_1.5.2-2_armhf.deb ...
Unpacking python3-scipy (1.5.2-2) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../149-python3-setuptools_50.3.0-1_all.deb ...
Unpacking python3-setuptools (50.3.0-1) ...
Selecting previously unselected package python3-snowballstemmer.
Preparing to unpack .../150-python3-snowballstemmer_2.0.0-2_all.deb ...
Unpacking python3-snowballstemmer (2.0.0-2) ...
Selecting previously unselected package sphinx-common.
Preparing to unpack .../151-sphinx-common_3.3.1-1_all.deb ...
Unpacking sphinx-common (3.3.1-1) ...
Selecting previously unselected package python3-sphinx.
Preparing to unpack .../152-python3-sphinx_3.3.1-1_all.deb ...
Unpacking python3-sphinx (3.3.1-1) ...
Selecting previously unselected package sbuild-build-depends-python-biom-format-dummy.
Preparing to unpack .../153-sbuild-build-depends-python-biom-format-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Setting up media-types (1.0.1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up liblcms2-2:armhf (2.9-4) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up ttf-bitstream-vera (1.10-8) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.2-1) ...
No schema files found: doing nothing.
Setting up libpython3.9-minimal:armhf (3.9.0-5+rpi1) ...
Setting up libtirpc-common (1.2.6-3) ...
Setting up fonts-lyx (2.3.5.2-1) ...
Setting up libdebhelper-perl (13.2.1) ...
Setting up libbrotli1:armhf (1.0.9-2) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up python-babel-localedata (2.8.0+dfsg.1-4) ...
Setting up libkrb5support0:armhf (1.17-10+b3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.10-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Setting up bash-completion (1:2.11-2) ...
Setting up liblzf1:armhf (3.6-2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up libk5crypto3:armhf (1.17-10+b3) ...
Setting up libgfortran5:armhf (10.2.0-16+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up sgml-base (1.30) ...
Setting up libkrb5-3:armhf (1.17-10+b3) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up python3.9-minimal (3.9.0-5+rpi1) ...
Setting up python-matplotlib-data (3.3.2-2) ...
Setting up openssl (1.1.1h-1) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up mailcap (3.67) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.2) ...
Setting up liblocale-gettext-perl (1.07-4+b1) ...
Setting up node-jquery (3.5.1+dfsg+~3.5.4-1) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libjs-underscore (1.9.1~dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-2) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-14) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up m4 (1.4.18-4) ...
Setting up help2man (1.47.16) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.2+dfsg-4) ...
Setting up libgssapi-krb5-2:armhf (1.17-10+b3) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.4-1) ...
Setting up libpython3.8-stdlib:armhf (3.8.6-1) ...
Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2) ...
Setting up python3.8 (3.8.6-1) ...
Setting up libpython3-stdlib:armhf (3.8.6-1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libtirpc3:armhf (1.2.6-3) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3 (3.8.6-1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-markupsafe (1.1.1-1+b1) ...
Setting up python3-tz (2020.4-2) ...
Setting up python3-atomicwrites (1.4.0-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.15.0-2) ...
Setting up python3-pil:armhf (8.0.1-1) ...
Setting up python3-roman (2.0.0-5) ...
Setting up python3-decorator (4.4.2-2) ...
Setting up python3-jinja2 (2.11.2-1) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-7) ...
Setting up python3-wcwidth (0.1.9+dfsg1-2) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-certifi (2020.6.20-1) ...
Setting up python3-snowballstemmer (2.0.0-2) ...
Setting up libpython3.8:armhf (3.8.6-1) ...
Setting up libjs-jquery-metadata (12-1.1) ...
Setting up python3-cycler (0.10.0-3) ...
Setting up python3-kiwisolver (1.3.1-1) ...
Setting up libjs-jquery-isonscreen (1.2.0-1) ...
Setting up python3-idna (2.10-1) ...
Setting up cython3 (0.29.21-3) ...
Setting up libjs-sphinxdoc (3.3.1-1) ...
Setting up python3-urllib3 (1.25.11-1) ...
Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ...
Setting up libnsl2:armhf (1.3.0-2) ...
Setting up python3-dateutil (2.8.1-4) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up libpython3.9-stdlib:armhf (3.9.0-5+rpi1) ...
Setting up python3-imagesize (1.2.0-2) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up python3-more-itertools (4.2.0-3) ...
Setting up python3-attr (20.3.0-1) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up python3-py (1.9.0-2) ...
Setting up python3-babel (2.8.0+dfsg.1-4) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-colorama (0.4.3-1) ...
Setting up python3-alabaster (0.7.8-1.1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-coverage (5.1+dfsg.1-2) ...
Setting up python3-nose2 (0.9.2-1) ...
Setting up python3-zipp (1.0.0-3) ...
Setting up python3-click (7.1.2-1) ...
Setting up python3-nose (1.3.7-7) ...
Setting up python3-pygments (2.3.1+dfsg-4) ...
Setting up python3-packaging (20.4-1) ...
Setting up libpython3.9:armhf (3.9.0-5+rpi1) ...
Setting up python3-chardet (3.0.4-7) ...
Setting up libpython3.8-dev:armhf (3.8.6-1) ...
Setting up sphinx-common (3.3.1-1) ...
Setting up python3-requests (2.24.0+dfsg-1) ...
Setting up python3.8-dev (3.8.6-1) ...
Setting up python3-future (0.18.2-4) ...
update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up python3.9 (3.9.0-5+rpi1) ...
Setting up libpython3-dev:armhf (3.8.6-1) ...
Setting up python3-importlib-metadata (1.6.0-2) ...
Setting up python3-cov-core (1.15.0-3) ...
Setting up libpython3.9-dev:armhf (3.9.0-5+rpi1) ...
Setting up python3-all (3.8.6-1) ...
Setting up libpython3-all-dev:armhf (3.8.6-1) ...
Setting up python3-dev (3.8.6-1) ...
Setting up python3-numpy (1:1.19.4-1+b1) ...
Setting up python3-pluggy (0.13.0-5) ...
Setting up python3.9-dev (3.9.0-5+rpi1) ...
Setting up python3-all-dev (3.8.6-1) ...
Setting up python3-matplotlib (3.3.2-2) ...
Setting up python3-scipy (1.5.2-2) ...
Setting up python3-pytest (4.6.11-1) ...
Setting up python3-pandas-lib:armhf (1.1.4+dfsg-1) ...
Setting up python3-h5py-serial (2.10.0-9) ...
Setting up python3-pytest-cov (2.8.1-1) ...
Setting up python3-pandas (1.1.4+dfsg-1) ...
Setting up python3-h5py (2.10.0-9) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.16+dfsg-3) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.16+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (3.3.1-1) ...
Setting up sbuild-build-depends-python-biom-format-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 bash-completion_1:2.11-2 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 cython3_0.29.21-3 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 docutils-common_0.16+dfsg-3 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 fonts-lyx_2.3.5.2-1 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libaec0_1.0.4-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-16+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libfreetype6_2.10.2+dfsg-4 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-16+rpi1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhdf5-103-1_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-1.1 libjs-jquery_3.5.1+dfsg+~3.5.4-1 libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2 libjs-jquery-isonscreen_1.2.0-1 libjs-jquery-metadata_12-1.1 libjs-jquery-tablesorter_1:2.31.3+dfsg1-1 libjs-jquery-throttle-debounce_1.1+dfsg.1-1 libjs-jquery-ui_1.12.1+dfsg-7 libjs-sphinxdoc_3.3.1-1 libjs-underscore_1.9.1~dfsg-1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack3_3.9.0-3 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.9-4 libldap-2.4-2_2.4.56+dfsg-1 libldap-common_2.4.56+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.2-2 liblzf1_3.6-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl2_1.3.0-2 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpython3-all-dev_3.8.6-1 libpython3-dev_3.8.6-1 libpython3-stdlib_3.8.6-1 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libpython3.9_3.9.0-5+rpi1 libpython3.9-dev_3.9.0-5+rpi1 libpython3.9-minimal_3.9.0-5+rpi1 libpython3.9-stdlib_3.9.0-5+rpi1 libreadline8_8.1~rc2-2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtiff5_4.1.0+git191117-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 node-jquery_3.5.1+dfsg+~3.5.4-1 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python-babel-localedata_2.8.0+dfsg.1-4 python-matplotlib-data_3.3.2-2 python3_3.8.6-1 python3-alabaster_0.7.8-1.1 python3-all_3.8.6-1 python3-all-dev_3.8.6-1 python3-atomicwrites_1.4.0-1 python3-attr_20.3.0-1 python3-babel_2.8.0+dfsg.1-4 python3-certifi_2020.6.20-1 python3-chardet_3.0.4-7 python3-click_7.1.2-1 python3-colorama_0.4.3-1 python3-cov-core_1.15.0-3 python3-coverage_5.1+dfsg.1-2 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-4 python3-decorator_4.4.2-2 python3-dev_3.8.6-1 python3-distutils_3.8.6-1 python3-docutils_0.16+dfsg-3 python3-future_0.18.2-4 python3-h5py_2.10.0-9 python3-h5py-serial_2.10.0-9 python3-idna_2.10-1 python3-imagesize_1.2.0-2 python3-importlib-metadata_1.6.0-2 python3-jinja2_2.11.2-1 python3-kiwisolver_1.3.1-1 python3-lib2to3_3.8.6-1 python3-markupsafe_1.1.1-1+b1 python3-matplotlib_3.3.2-2 python3-minimal_3.8.6-1 python3-more-itertools_4.2.0-3 python3-nose_1.3.7-7 python3-nose2_0.9.2-1 python3-numpy_1:1.19.4-1+b1 python3-packaging_20.4-1 python3-pandas_1.1.4+dfsg-1 python3-pandas-lib_1.1.4+dfsg-1 python3-pil_8.0.1-1 python3-pkg-resources_50.3.0-1 python3-pluggy_0.13.0-5 python3-py_1.9.0-2 python3-pygments_2.3.1+dfsg-4 python3-pyparsing_2.4.7-1 python3-pytest_4.6.11-1 python3-pytest-cov_2.8.1-1 python3-requests_2.24.0+dfsg-1 python3-roman_2.0.0-5 python3-scipy_1.5.2-2 python3-setuptools_50.3.0-1 python3-six_1.15.0-2 python3-snowballstemmer_2.0.0-2 python3-sphinx_3.3.1-1 python3-tz_2020.4-2 python3-urllib3_1.25.11-1 python3-wcwidth_0.1.9+dfsg1-2 python3-zipp_1.0.0-3 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 python3.9_3.9.0-5+rpi1 python3.9-dev_3.9.0-5+rpi1 python3.9-minimal_3.9.0-5+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.30 sphinx-common_3.3.1-1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 ttf-bitstream-vera_1.10-8 tzdata_2020d-1 util-linux_2.36-3 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.3fIe_IBi/trustedkeys.kbx': General error
gpgv: Signature made Sat Nov 21 12:48:22 2020 UTC
gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv:                issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./python-biom-format_2.1.10-1.dsc
dpkg-source: info: extracting python-biom-format in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-biom-format_2.1.10.orig.tar.xz
dpkg-source: info: unpacking python-biom-format_2.1.10-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying ignore_local_dist-packages.patch
dpkg-source: info: applying no-web-adds.patch
dpkg-source: info: applying fix_future_import.patch
dpkg-source: info: applying enable_sloppy_sphinx_build.patch
dpkg-source: info: applying sphinx_1.6.patch
dpkg-source: info: applying sphinx.ext.pngmath.patch
dpkg-source: info: applying posix_shell.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-c042c02e-1eb4-44c3-be30-e96878e4ac2b
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package python-biom-format
dpkg-buildpackage: info: source version 2.1.10-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
	install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
	pybuild --clean --test-pytest -i python{version} -p "3.9 3.8"
I: pybuild base:232: python3.9 setup.py clean 
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:232: python3.8 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files
	rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary-arch
dh binary-arch --with python3,bash-completion,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
	install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
	pybuild --configure --test-pytest -i python{version} -p "3.9 3.8"
I: pybuild base:232: python3.9 setup.py config 
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_filter.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_subsample.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/biom/_transform.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling biom/_filter.pyx because it changed.
Compiling biom/_transform.pyx because it changed.
Compiling biom/_subsample.pyx because it changed.
[1/3] Cythonizing biom/_filter.pyx
[2/3] Cythonizing biom/_subsample.pyx
[3/3] Cythonizing biom/_transform.pyx
running config
I: pybuild base:232: python3.8 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# arch
USE_CYTHON=true dh_auto_build
	pybuild --build --test-pytest -i python{version} -p "3.9 3.8"
I: pybuild base:232: /usr/bin/python3.9 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running egg_info
creating biom_format.egg-info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
writing manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armhf-3.9/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from biom/_filter.c:629:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_filter.cpython-39-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armhf-3.9/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from biom/_transform.c:629:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_transform.cpython-39-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armhf-3.9/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from biom/_subsample.c:629:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/_subsample.cpython-39-arm-linux-gnueabihf.so
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/installation_informer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/metadata_adder.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/metadata_exporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_head.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_ids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_subsetter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_summarizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/table_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
copying biom/cli/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/long_lines.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_err.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests
copying biom/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_add_metadata.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_show_install_info.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_subset_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_summarize_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_table_normalizer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_uc_processor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
copying biom/tests/test_cli/test_validate_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
running egg_info
writing biom_format.egg-info/PKG-INFO
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
writing requirements to biom_format.egg-info/requires.txt
writing top-level names to biom_format.egg-info/top_level.txt
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'support_files'
warning: no directories found matching 'tests/test_data'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '.*.swp' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/_subsample.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
copying biom/_transform.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/assets
copying biom/assets/exercise_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/assets
copying biom/assets/exercise_cli.sh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/assets
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/bench_tables
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_cli/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_data
copying biom/tests/test_data/bad_table.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/bad_table.txt.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/empty.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/no-contents.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.biom -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
copying biom/tests/test_data/test.json.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_data
running build_ext
building 'biom._filter' extension
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/biom
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_filter.c -o build/temp.linux-armhf-3.8/biom/_filter.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from biom/_filter.c:629:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/biom/_filter.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/_filter.cpython-38-arm-linux-gnueabihf.so
building 'biom._transform' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_transform.c -o build/temp.linux-armhf-3.8/biom/_transform.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from biom/_transform.c:629:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/biom/_transform.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/_transform.cpython-38-arm-linux-gnueabihf.so
building 'biom._subsample' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c biom/_subsample.c -o build/temp.linux-armhf-3.8/biom/_subsample.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from biom/_subsample.c:629:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/biom/_subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/_subsample.cpython-38-arm-linux-gnueabihf.so
# indep:
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html
Running Sphinx v3.3.1
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 12 source files that are out of date
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [  8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index

/<<PKGBUILDDIR>>/doc/conf.py:238: RemovedInSphinx40Warning: The app.add_javascript() is deprecated. Please use app.add_js_file() instead.
  app.add_javascript('copybutton.js')
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  8%] BIOM_LICENSE
writing output... [ 16%] documentation/adding_metadata
writing output... [ 25%] documentation/biom_conversion
writing output... [ 33%] documentation/biom_format
writing output... [ 41%] documentation/format_versions/biom-1.0
writing output... [ 50%] documentation/format_versions/biom-2.0
writing output... [ 58%] documentation/format_versions/biom-2.1
writing output... [ 66%] documentation/index
writing output... [ 75%] documentation/quick_usage_examples
writing output... [ 83%] documentation/summarizing_biom_tables
writing output... [ 91%] documentation/table_objects
writing output... [100%] index

/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated
/<<PKGBUILDDIR>>/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated
generating indices... done
writing additional pages... search done
copying images... [100%] _static/biom-format.png

copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 6 warnings.

The HTML pages are in build/html.
PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man
Running Sphinx v3.3.1
making output directory... done
[autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst
Failed to import 'biom': no module named biom
Failed to import 'biom.table': no module named biom.table
building [mo]: targets for 0 po files that are out of date
building [man]: all manpages
updating environment: [new config] 12 added, 0 changed, 0 removed
reading sources... [  8%] BIOM_LICENSE
reading sources... [ 16%] documentation/adding_metadata
reading sources... [ 25%] documentation/biom_conversion
reading sources... [ 33%] documentation/biom_format
reading sources... [ 41%] documentation/format_versions/biom-1.0
reading sources... [ 50%] documentation/format_versions/biom-2.0
reading sources... [ 58%] documentation/format_versions/biom-2.1
reading sources... [ 66%] documentation/index
reading sources... [ 75%] documentation/quick_usage_examples
reading sources... [ 83%] documentation/summarizing_biom_tables
reading sources... [ 91%] documentation/table_objects
reading sources... [100%] index

/<<PKGBUILDDIR>>/doc/conf.py:238: RemovedInSphinx40Warning: The app.add_javascript() is deprecated. Please use app.add_js_file() instead.
  app.add_javascript('copybutton.js')
WARNING: autodoc: failed to import module 'biom'; the following exception was raised:
No module named 'biom._filter'
WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised:
No module named 'biom._filter'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done
build succeeded, 2 warnings.

The manual pages are in build/man.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--buildsystem=pybuild
	pybuild --test --test-pytest -i python{version} -p "3.9 3.8"
I: pybuild pybuild:284: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build; python3.9 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.9.0+, pytest-4.6.11, py-1.9.0, pluggy-0.13.0
rootdir: /<<PKGBUILDDIR>>, inifile: pytest.ini
plugins: cov-2.8.1
collected 0 items / 12 errors

==================================== ERRORS ====================================
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_err.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_err.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_parse.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_parse.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_util.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_util.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_add_metadata.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_add_metadata.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_show_install_info.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_show_install_info.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_subset_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_summarize_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_converter.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_converter.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_normalizer.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_table_normalizer.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_uc_processor.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_uc_processor.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)
_ ERROR collecting .pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_validate_table.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build/biom/tests/test_cli/test_validate_table.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
biom/__init__.py:53: in <module>
    from .table import Table
biom/table.py:177: in <module>
    import scipy.stats
/usr/lib/python3/dist-packages/scipy/__init__.py:147: in <module>
    from scipy._lib._ccallback import LowLevelCallable
/usr/lib/python3/dist-packages/scipy/_lib/_ccallback.py:1: in <module>
    from . import _ccallback_c
E   ImportError: cannot import name '_ccallback_c' from 'scipy._lib' (/usr/lib/python3/dist-packages/scipy/_lib/__init__.py)

----------- coverage: platform linux, python 3.9.0-final-0 -----------
Name                                            Stmts   Miss  Cover
-------------------------------------------------------------------
biom/__init__.py                                   16     13    19%
biom/cli/__init__.py                               24     24     0%
biom/cli/installation_informer.py                  58     58     0%
biom/cli/metadata_adder.py                         79     79     0%
biom/cli/metadata_exporter.py                      19     19     0%
biom/cli/table_converter.py                        85     85     0%
biom/cli/table_head.py                             15     15     0%
biom/cli/table_ids.py                              10     10     0%
biom/cli/table_normalizer.py                       25     25     0%
biom/cli/table_subsetter.py                        74     74     0%
biom/cli/table_summarizer.py                       68     68     0%
biom/cli/table_validator.py                       319    319     0%
biom/cli/uc_processor.py                           37     37     0%
biom/cli/util.py                                   18     18     0%
biom/err.py                                       122    122     0%
biom/exception.py                                  26     26     0%
biom/parse.py                                     306    306     0%
biom/table.py                                    1622   1618     1%
biom/tests/__init__.py                              0      0   100%
biom/tests/long_lines.py                            8      8     0%
biom/tests/test_cli/__init__.py                     0      0   100%
biom/tests/test_cli/test_add_metadata.py           40     40     0%
biom/tests/test_cli/test_show_install_info.py       8      8     0%
biom/tests/test_cli/test_subset_table.py           59     59     0%
biom/tests/test_cli/test_summarize_table.py        21     21     0%
biom/tests/test_cli/test_table_converter.py        80     80     0%
biom/tests/test_cli/test_table_normalizer.py       22     22     0%
biom/tests/test_cli/test_uc_processor.py           38     38     0%
biom/tests/test_cli/test_validate_table.py        306    306     0%
biom/tests/test_data/__init__.py                    0      0   100%
biom/tests/test_err.py                            162    162     0%
biom/tests/test_parse.py                          228    228     0%
biom/tests/test_table.py                         2422   2422     0%
biom/tests/test_util.py                           144    144     0%
biom/util.py                                      184    184     0%
-------------------------------------------------------------------
TOTAL                                            6645   6638     1%

!!!!!!!!!!!!!!!!!!! Interrupted: 12 errors during collection !!!!!!!!!!!!!!!!!!!
========================== 12 error in 33.21 seconds ===========================
E: pybuild pybuild:353: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_biom-format/build; python3.9 -m pytest 
I: pybuild pybuild:284: cp -r /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build; python3.8 -m pytest 
============================= test session starts ==============================
platform linux -- Python 3.8.6, pytest-4.6.11, py-1.9.0, pluggy-0.13.0
rootdir: /<<PKGBUILDDIR>>, inifile: pytest.ini
plugins: cov-2.8.1
collected 356 items

biom/tests/test_err.py .....................                             [  5%]
biom/tests/test_parse.py .........................                       [ 12%]
biom/tests/test_table.py ............................................... [ 26%]
....................................................................sss. [ 46%]
........................................................................ [ 66%]
.....................................................                    [ 81%]
biom/tests/test_util.py ..s................                              [ 86%]
biom/tests/test_cli/test_add_metadata.py ....                            [ 87%]
biom/tests/test_cli/test_show_install_info.py .                          [ 88%]
biom/tests/test_cli/test_subset_table.py .....                           [ 89%]
biom/tests/test_cli/test_summarize_table.py ..                           [ 90%]
biom/tests/test_cli/test_table_converter.py ......                       [ 91%]
biom/tests/test_cli/test_table_normalizer.py .                           [ 92%]
biom/tests/test_cli/test_uc_processor.py ......                          [ 93%]
biom/tests/test_cli/test_validate_table.py ......................        [100%]

=============================== warnings summary ===============================
biom/table.py:185
biom/table.py:185
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:185: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
    from collections import defaultdict, Hashable, Iterable

biom/tests/test_table.py:20
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py:20: FutureWarning: pandas.util.testing is deprecated. Use the functions in the public API at pandas.testing instead.
    import pandas.util.testing as pdt

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_both
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_obs
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::SupportTests::test_remove_empty_sample
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:124: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
    self._set_arrayXarray(i, j, x)

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:4077: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
    data = np.hstack(h5_data[start:end]

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_observation_subset
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::TableTests::test_from_hdf5_sample_subset
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_observations_hdf5
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_subset_table.py::TestSubsetTable::test_subset_samples_hdf5
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/table.py:4079: FutureWarning: arrays to stack must be passed as a "sequence" type such as list or tuple. Support for non-sequence iterables such as generators is deprecated as of NumPy 1.16 and will raise an error in the future.
    indices = np.hstack(h5_indices[start:end]

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py::TableTests::test_nnz_issue_727
  /usr/lib/python3/dist-packages/scipy/sparse/_index.py:82: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil_matrix is more efficient.
    self._set_intXint(row, col, x.flat[0])

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:89: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append('Num samples: ' + locale.format('%d', num_samples,

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:91: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append('Num observations: ' + locale.format('%d',

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:96: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append('Total count: ' + locale.format('%d', total_count,

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:111: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append(' Min: ' + locale.format('%1.3f', min_counts, grouping=True))

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:112: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append(' Max: ' + locale.format('%1.3f', max_counts, grouping=True))

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:113: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append(' Median: ' + locale.format('%1.3f', median_counts,

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:115: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append(' Mean: ' + locale.format('%1.3f', mean_counts,

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:117: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append(' Std. dev.: ' + locale.format('%1.3f',

.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_default
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_cli/test_summarize_table.py::TestSummarizeTable::test_qualitative
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py:144: DeprecationWarning: This method will be removed in a future version of Python. Use 'locale.format_string()' instead.
    lines.append('%s: ' % k + locale.format('%1.3f', v, grouping=True))

-- Docs: https://docs.pytest.org/en/latest/warnings.html

----------- coverage: platform linux, python 3.8.6-final-0 -----------
Name                                                                                                                                   Stmts   Miss  Cover
----------------------------------------------------------------------------------------------------------------------------------------------------------
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/__init__.py                       16      0   100%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/__init__.py                   24      4    83%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/installation_informer.py      58     11    81%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/metadata_adder.py             79     29    63%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/metadata_exporter.py          19     10    47%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_converter.py            85     19    78%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_head.py                 15      5    67%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_ids.py                  10      3    70%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_normalizer.py           25      5    80%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_subsetter.py            74     19    74%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_summarizer.py           68     15    78%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/table_validator.py           319     63    80%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/uc_processor.py               37      7    81%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/cli/util.py                       18      5    72%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/err.py                           122      1    99%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/exception.py                      26      0   100%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/parse.py                         306     66    78%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/table.py                        1622    138    91%
__init__.py                                                                                                                                0      0   100%
long_lines.py                                                                                                                              8      0   100%
test_cli/__init__.py                                                                                                                       0      0   100%
test_cli/test_add_metadata.py                                                                                                             40      1    98%
test_cli/test_show_install_info.py                                                                                                         8      1    88%
test_cli/test_subset_table.py                                                                                                             59      1    98%
test_cli/test_summarize_table.py                                                                                                          21      1    95%
test_cli/test_table_converter.py                                                                                                          80      1    99%
test_cli/test_table_normalizer.py                                                                                                         22      1    95%
test_cli/test_uc_processor.py                                                                                                             38      1    97%
test_cli/test_validate_table.py                                                                                                          306      1    99%
test_data/__init__.py                                                                                                                      0      0   100%
test_err.py                                                                                                                              162      4    98%
test_parse.py                                                                                                                            228      1    99%
test_table.py                                                                                                                           2422     24    99%
test_util.py                                                                                                                             144      7    95%
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_biom-format/build/biom/util.py                          184     30    84%
----------------------------------------------------------------------------------------------------------------------------------------------------------
TOTAL                                                                                                                                   6645    474    93%

============= 352 passed, 4 skipped, 48 warnings in 30.79 seconds ==============
	rm -fr -- /tmp/dh-xdg-rundir-XISCiuvb
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.9 3.8" returned exit code 13
make: *** [debian/rules:19: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-11-23T07:05:27Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 161852
Build-Time: 166
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 903
Job: python-biom-format_2.1.10-1
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 1090
Source-Version: 2.1.10-1
Space: 161852
Status: attempted
Version: 2.1.10-1
--------------------------------------------------------------------------------
Finished at 2020-11-23T07:05:27Z
Build needed 00:18:10, 161852k disk space
Raspbian Package Auto-Building

Build log for python-biom-format (2.1.10-1) on armhf
