Raspbian Package Auto-Building

Build log for python-biom-format (1.0.0-1) on armhf

python-biom-format1.0.0-1armhf → 2013-07-06 20:40:55

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on 

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║ python-biom-format 1.0.0-1 (armhf)                         06 Jul 2013 20:30 ║
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Package: python-biom-format
Version: 1.0.0-1
Source Version: 1.0.0-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/python-biom-format-_Lycjk/python-biom-format-1.0.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/python-biom-format-_Lycjk' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-0b3aadec-7f7b-497a-b082-3523f41854e0' with '«CHROOT»'

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Get:3 http://172.17.0.1 jessie-staging/main Sources [6661 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7746 kB]
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Building dependency tree...
NOTICE: 'python-biom-format' packaging is maintained in the 'Svn' version control system at:
svn://svn.debian.org/debian-med/trunk/packages/python-biom-format/trunk/
Need to get 116 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main python-biom-format 1.0.0-1 (dsc) [1472 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main python-biom-format 1.0.0-1 (tar) [77.6 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main python-biom-format 1.0.0-1 (diff) [37.1 kB]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-BHCvfy/apt_archive/sbuild-build-depends-core-dummy.deb'.
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Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), python-all-dev (>= 2.6), python-numpy, cython
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), python-all-dev (>= 2.6), python-numpy, cython
dpkg-deb: building package `sbuild-build-depends-python-biom-format-dummy' in `/«BUILDDIR»/resolver-9941gn/apt_archive/sbuild-build-depends-python-biom-format-dummy.deb'.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install python-biom-format build dependencies (apt-based resolver)           │
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Installing build dependencies
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The following extra packages will be installed:
  bsdmainutils cython debhelper file gettext gettext-base groff-base
  intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev
  libffi6 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1
  libpython-all-dev libpython-dev libpython-stdlib libpython2.7
  libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsqlite3-0
  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python
  python-all python-all-dev python-dev python-minimal python-numpy
  python-support python2.7 python2.7-dev python2.7-minimal
Suggested packages:
  wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
  libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg
  python-nose gfortran python2.7-doc binfmt-support
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils cython debhelper file gettext gettext-base groff-base
  intltool-debian libasprintf0c2 libblas3 libcroco3 libexpat1 libexpat1-dev
  libffi6 libgfortran3 libglib2.0-0 liblapack3 libmagic1 libpipeline1
  libpython-all-dev libpython-dev libpython-stdlib libpython2.7
  libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsqlite3-0
  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python
  python-all python-all-dev python-dev python-minimal python-numpy
  python-support python2.7 python2.7-dev python2.7-minimal
  sbuild-build-depends-python-biom-format-dummy
0 upgraded, 44 newly installed, 0 to remove and 6 not upgraded.
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Get:43 http://172.17.0.1/private/ jessie-staging/main python-numpy armhf 1:1.7.1-2 [1926 kB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.0.35-wand5.2 armhf (armv7l)
Toolchain package versions: binutils_2.23.52.20130612-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-6+rpi1 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: apt_0.9.7.8+rpi1 base-files_7.2 base-passwd_3.5.26 bash_4.2+dfsg-1 binutils_2.23.52.20130612-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.4 build-essential_11.6 bzip2_1.0.6-4 coreutils_8.13-3.5 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 cython_0.19+git51-g3078752-1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20130605 debianutils_4.3.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-5 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.0-7+rpi1 gettext_0.18.2.1-1 gettext-base_0.18.2.1-1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.14-2 groff-base_1.22.2-3 gzip_1.6-1 hostname_3.13 initramfs-tools_0.113 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.7.8+rpi1 libasprintf0c2_0.18.2.1-1 libattr1_1:2.4.47-1 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.4 libbz2-1.0_1.0.6-4 libc-bin_2.17-6+rpi1 libc-dev-bin_2.17-6+rpi1 libc6_2.17-6+rpi1 libc6-dev_2.17-6+rpi1 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.12-1 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libexpat1-dev_2.1.0-3 libffi6_3.0.13-4 libgc1c2_1:7.1-9.1 libgcc1_1:4.8.0-7+rpi1 libgdbm3_1.8.3-12 libgfortran3_4.8.0-7+rpi1 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.1.2+dfsg-1 libgomp1_4.8.0-7+rpi1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.4 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnih-dbus1_1.0.3-4.1+b1 libnih1_1.0.3-4.1+b1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libprocps0_1:3.3.4-2 libpython-all-dev_2.7.5-2 libpython-dev_2.7.5-2 libpython-stdlib_2.7.5-2 libpython2.7_2.7.5-5 libpython2.7-dev_2.7.5-5 libpython2.7-minimal_2.7.5-5 libpython2.7-stdlib_2.7.5-5 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsqlite3-0_3.7.17-1 libss2_1.42.5-1.1 libssl1.0.0_1.0.1e-2+rpi1 libstdc++6_4.8.0-7+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.4 libxml2_2.9.1+dfsg1-2 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.3-7 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.4 mountall_2.48 multiarch-support_2.17-6+rpi1 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.8-6+deb8u1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python_2.7.5-2 python-all_2.7.5-2 python-all-dev_2.7.5-2 python-dev_2.7.5-2 python-minimal_2.7.5-2 python-numpy_1:1.7.1-2 python-support_1.0.15 python2.7_2.7.5-5 python2.7-dev_2.7.5-5 python2.7-minimal_2.7.5-5 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biom-format-dummy_0.invalid.0 sed_4.2.2-1 sensible-utils_0.0.9 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-6 tzdata_2013c-2 udev_175-7.2 util-linux_2.20.1-5.4 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Aug  3 14:02:51 2012 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./python-biom-format_1.0.0-1.dsc
dpkg-source: info: extracting python-biom-format in python-biom-format-1.0.0
dpkg-source: info: unpacking python-biom-format_1.0.0.orig.tar.gz
dpkg-source: info: unpacking python-biom-format_1.0.0-1.debian.tar.gz
dpkg-source: info: applying enable_cython_beta.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-0b3aadec-7f7b-497a-b082-3523f41854e0
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
previous=N
runlevel=2

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package python-biom-format
dpkg-buildpackage: source version 1.0.0-1
 dpkg-source --before-build python-biom-format-1.0.0
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python2 # ,sphinxdoc
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_auto_clean
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -rf python-code/support-code/_sparsemat.cpp
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_clean
 debian/rules build-arch
dh build-arch --with python2 # ,sphinxdoc
   dh_testdir -a
   dh_auto_configure -a
   dh_auto_build -a
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
running build
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/biom
copying python-code/biom/table.py -> build/lib.linux-armv7l-2.7/biom
copying python-code/biom/parse.py -> build/lib.linux-armv7l-2.7/biom
copying python-code/biom/exception.py -> build/lib.linux-armv7l-2.7/biom
copying python-code/biom/unit_test.py -> build/lib.linux-armv7l-2.7/biom
copying python-code/biom/sparsedict.py -> build/lib.linux-armv7l-2.7/biom
copying python-code/biom/sparsemat.py -> build/lib.linux-armv7l-2.7/biom
copying python-code/biom/util.py -> build/lib.linux-armv7l-2.7/biom
copying python-code/biom/__init__.py -> build/lib.linux-armv7l-2.7/biom
running build_ext
building 'biom._sparsemat' extension
creating build/temp.linux-armv7l-2.7
creating build/temp.linux-armv7l-2.7/python-code
creating build/temp.linux-armv7l-2.7/python-code/support-code
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c python-code/support-code/_sparsemat.cpp -o build/temp.linux-armv7l-2.7/python-code/support-code/_sparsemat.o -std=c++0x
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for Ada/C/ObjC but not for C++ [enabled by default]
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c python-code/support-code/sparsemat_lib.cpp -o build/temp.linux-armv7l-2.7/python-code/support-code/sparsemat_lib.o -std=c++0x
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for Ada/C/ObjC but not for C++ [enabled by default]
c++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/python-code/support-code/_sparsemat.o build/temp.linux-armv7l-2.7/python-code/support-code/sparsemat_lib.o -L/usr/lib/pymodules/python2.7/numpy -o build/lib.linux-armv7l-2.7/biom/_sparsemat.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/test_biom_validator.py -> build/scripts-2.7
copying and adjusting scripts/print_biom_python_config.py -> build/scripts-2.7
copying and adjusting scripts/convert_biom.py -> build/scripts-2.7
copying and adjusting scripts/biom_validator.py -> build/scripts-2.7
changing mode of build/scripts-2.7/test_biom_validator.py from 664 to 775
changing mode of build/scripts-2.7/print_biom_python_config.py from 664 to 775
changing mode of build/scripts-2.7/convert_biom.py from 664 to 775
changing mode of build/scripts-2.7/biom_validator.py from 664 to 775
   dh_auto_test -a
 fakeroot debian/rules binary-arch
dh binary-arch --with python2 # ,sphinxdoc
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
running install
running build
running build_py
running build_ext
building 'biom._sparsemat' extension
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c python-code/support-code/_sparsemat.cpp -o build/temp.linux-armv7l-2.7/python-code/support-code/_sparsemat.o -std=c++0x
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for Ada/C/ObjC but not for C++ [enabled by default]
arm-linux-gnueabihf-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c python-code/support-code/sparsemat_lib.cpp -o build/temp.linux-armv7l-2.7/python-code/support-code/sparsemat_lib.o -std=c++0x
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for Ada/C/ObjC but not for C++ [enabled by default]
c++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/python-code/support-code/_sparsemat.o build/temp.linux-armv7l-2.7/python-code/support-code/sparsemat_lib.o -L/usr/lib/pymodules/python2.7/numpy -o build/lib.linux-armv7l-2.7/biom/_sparsemat.so
running build_scripts
running install_lib
creating /«PKGBUILDDIR»/debian/python-biom-format/usr
creating /«PKGBUILDDIR»/debian/python-biom-format/usr/lib
creating /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7
creating /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages
creating /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/table.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/parse.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/exception.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/unit_test.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/sparsedict.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/sparsemat.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/util.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/__init__.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
copying build/lib.linux-armv7l-2.7/biom/_sparsemat.so -> /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom
running install_scripts
creating /«PKGBUILDDIR»/debian/python-biom-format/usr/bin
copying build/scripts-2.7/test_biom_validator.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/bin
copying build/scripts-2.7/print_biom_python_config.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/bin
copying build/scripts-2.7/convert_biom.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/bin
copying build/scripts-2.7/biom_validator.py -> /«PKGBUILDDIR»/debian/python-biom-format/usr/bin
changing mode of /«PKGBUILDDIR»/debian/python-biom-format/usr/bin/test_biom_validator.py to 775
changing mode of /«PKGBUILDDIR»/debian/python-biom-format/usr/bin/print_biom_python_config.py to 775
changing mode of /«PKGBUILDDIR»/debian/python-biom-format/usr/bin/convert_biom.py to 775
changing mode of /«PKGBUILDDIR»/debian/python-biom-format/usr/bin/biom_validator.py to 775
running install_egg_info
Writing /«PKGBUILDDIR»/debian/python-biom-format/usr/lib/python2.7/dist-packages/biom_format-1.0.0c.egg-info
   debian/rules override_dh_install
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_install
# remove language extension
rename 's/\.py$//;' /«PKGBUILDDIR»/debian/python-biom-format/usr/bin/*
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_python2 -a
   dh_perl -a
   dh_link -a
   dh_compress -a
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-biom-format/usr/lib/python2.7/dist-packages/biom/_sparsemat.so was not linked against libpthread.so.0 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-biom-format: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-biom-format: unused substitution variable ${python:Provides}
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package `python-biom-format' in `../python-biom-format_1.0.0-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../python-biom-format_1.0.0-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build python-biom-format-1.0.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130706-2038

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


python-biom-format_1.0.0-1_armhf.changes:
─────────────────────────────────────────

Format: 1.8
Date: Fri, 03 Aug 2012 10:38:26 +0200
Source: python-biom-format
Binary: python-biom-format
Architecture: armhf
Version: 1.0.0-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description: 
 python-biom-format - Biological Observation Matrix (BIOM) format
Closes: 682242
Changes: 
 python-biom-format (1.0.0-1) unstable; urgency=low
 .
   * Initial release (Closes: #682242)
Checksums-Sha1: 
 6364f8ebb7d52f16c15c12bad91eb3a0f3d514a0 60396 python-biom-format_1.0.0-1_armhf.deb
Checksums-Sha256: 
 3510c6c35e58879f3cae89b3899ff3ac14e46c369c984eeb5341caa3e6706508 60396 python-biom-format_1.0.0-1_armhf.deb
Files: 
 93d2f5f50d1f1a9aca893a1c738bff50 60396 python optional python-biom-format_1.0.0-1_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


python-biom-format_1.0.0-1_armhf.deb
────────────────────────────────────

 new debian package, version 2.0.
 size 60396 bytes: control archive=1739 bytes.
    1600 bytes,    29 lines      control              
    1270 bytes,    18 lines      md5sums              
     168 bytes,     9 lines   *  postinst             #!/bin/sh
     273 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-biom-format
 Version: 1.0.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 225
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), python (>= 2.7), python (<< 2.8), python-dateutil, python-cogent
 Section: python
 Priority: optional
 Homepage: http://biom-format.org/
 Description: Biological Observation Matrix (BIOM) format
  The BIOM file format (canonically pronounced biome) is designed to be a
  general-use format for representing biological sample by observation
  contingency tables. BIOM is a recognized standard for the Earth
  Microbiome Project and is a Genomics Standards Consortium candidate
  project.
  .
  The BIOM format is designed for general use in broad areas of
  comparative -omics. For example, in marker-gene surveys, the primary use
  of this format is to represent OTU tables: the observations in this case
  are OTUs and the matrix contains counts corresponding to the number of
  times each OTU is observed in each sample. With respect to metagenome
  data, this format would be used to represent metagenome tables: the
  observations in this case might correspond to SEED subsystems, and the
  matrix would contain counts corresponding to the number of times each
  subsystem is observed in each metagenome. Similarly, with respect to
  genome data, this format may be used to represent a set of genomes: the
  observations in this case again might correspond to SEED subsystems, and
  the counts would correspond to the number of times each subsystem is
  observed in each genome.

drwxr-xr-x root/root         0 2013-07-06 20:38 ./
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/lib/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/
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drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/lib/pyshared/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/lib/pyshared/python2.7/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/lib/pyshared/python2.7/biom/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/bin/
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-rwxr-xr-x root/root      2404 2013-07-06 20:38 ./usr/bin/print_biom_python_config
-rwxr-xr-x root/root     19257 2013-07-06 20:38 ./usr/bin/test_biom_validator
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/share/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/share/doc/python-biom-format/
-rw-r--r-- root/root      1430 2012-07-23 06:21 ./usr/share/doc/python-biom-format/copyright
-rw-r--r-- root/root       161 2012-08-03 09:26 ./usr/share/doc/python-biom-format/changelog.Debian.gz
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/share/man/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/share/man/man1/
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drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/share/pyshared/
drwxr-xr-x root/root         0 2013-07-06 20:38 ./usr/share/pyshared/biom/
-rw-r--r-- root/root     53187 2012-06-02 17:37 ./usr/share/pyshared/biom/table.py
-rw-r--r-- root/root     19909 2012-06-02 17:37 ./usr/share/pyshared/biom/parse.py
-rw-r--r-- root/root       603 2012-06-02 17:37 ./usr/share/pyshared/biom/exception.py
-rw-r--r-- root/root      9165 2012-06-02 17:37 ./usr/share/pyshared/biom/unit_test.py
-rw-r--r-- root/root      9956 2012-06-02 17:37 ./usr/share/pyshared/biom/sparsedict.py
-rw-r--r-- root/root     11973 2012-06-02 17:37 ./usr/share/pyshared/biom/sparsemat.py
-rw-r--r-- root/root      3204 2012-06-02 17:37 ./usr/share/pyshared/biom/util.py
-rw-r--r-- root/root       475 2012-06-02 17:37 ./usr/share/pyshared/biom/__init__.py
-rw-r--r-- root/root       692 2013-07-06 20:38 ./usr/share/pyshared/biom_format-1.0.0c.egg-info
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/__init__.py -> ../../../../share/pyshared/biom/__init__.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/util.py -> ../../../../share/pyshared/biom/util.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/sparsemat.py -> ../../../../share/pyshared/biom/sparsemat.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/sparsedict.py -> ../../../../share/pyshared/biom/sparsedict.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/unit_test.py -> ../../../../share/pyshared/biom/unit_test.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/exception.py -> ../../../../share/pyshared/biom/exception.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/parse.py -> ../../../../share/pyshared/biom/parse.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom/table.py -> ../../../../share/pyshared/biom/table.py
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/python2.7/dist-packages/biom_format-1.0.0c.egg-info -> ../../../share/pyshared/biom_format-1.0.0c.egg-info
lrwxrwxrwx root/root         0 2013-07-06 20:38 ./usr/lib/pyshared/python2.7/biom/_sparsemat.so -> ../../../python2.7/dist-packages/biom/_sparsemat.so


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│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 2685
Build-Time: 96
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 336
Job: python-biom-format_1.0.0-1
Machine Architecture: armhf
Package: python-biom-format
Package-Time: 496
Source-Version: 1.0.0-1
Space: 2685
Status: successful
Version: 1.0.0-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20130706-2038
Build needed 00:08:16, 2685k disc space