pybigwig →
0.3.18+dfsg-1 →
armhf → 2022-03-05 06:48:03
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| pybigwig 0.3.18+dfsg-1 (armhf) Sat, 05 Mar 2022 06:37:52 +0000 |
+==============================================================================+
Package: pybigwig
Version: 0.3.18+dfsg-1
Source Version: 0.3.18+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-4a50c40f-5949-4910-b362-c1ea2422fa8a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-e61fzr/resolver-0iiuPQ' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.9 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.7 MB]
Fetched 26.6 MB in 13s (2010 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pybigwig' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pybigwig.git
Please use:
git clone https://salsa.debian.org/med-team/pybigwig.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 37.3 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (dsc) [2168 B]
Get:2 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (tar) [30.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (diff) [4228 B]
Fetched 37.3 kB in 0s (458 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pybigwig-e61fzr/pybigwig-0.3.18+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-e61fzr' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [425 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [510 B]
Fetched 1892 B in 0s (39.0 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbigwig-dev
libbigwig0 libblas3 libbrotli1 libbsd0 libcurl3-gnutls libcurl4-gnutls-dev
libdebhelper-perl libedit2 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu67 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libmd0
libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev
libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.10 python3.10-dev python3.10-minimal python3.9
python3.9-dev python3.9-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-pytest python-setuptools-doc python3.10-venv
python3.10-doc binfmt-support python3.9-venv python3.9-doc
Recommended packages:
curl | wget | lynx curl ca-certificates libarchive-cpio-perl
javascript-common publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbigwig-dev
libbigwig0 libblas3 libbrotli1 libbsd0 libcurl3-gnutls libcurl4-gnutls-dev
libdebhelper-perl libedit2 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu67 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libmd0
libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev
libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.10 python3.10-dev python3.10-minimal python3.9
python3.9-dev python3.9-minimal sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 82 newly installed, 0 to remove and 21 not upgraded.
Need to get 45.7 MB of archives.
After this operation, 181 MB of additional disk space will be used.
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Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.10-2+rpi1 [793 kB]
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Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.10-2+rpi1 [1595 kB]
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Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.10-2+rpi1 [1610 kB]
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Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.1-1 [1358 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
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Get:21 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
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Get:27 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
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Get:29 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
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Get:31 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
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Get:39 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220215 [112 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.81.0-1 [315 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libbigwig0 armhf 0.4.6+dfsg-1 [23.6 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libbigwig-dev armhf 0.4.6+dfsg-1 [32.2 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.5-1 [108 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.81.0-1 [391 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.4-1 [135 kB]
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Get:62 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.2-1 [139 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.10-2+rpi1 [1419 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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Get:80 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1 [3437 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
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Processing triggers for libc-bin (2.33-5+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.37.90.20220207-1+rpi1 dpkg-dev_1.21.1+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-5+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.15.15-2+rpi1
Package versions: adduser_3.118 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220207-1+rpi1 binutils-arm-linux-gnueabihf_2.37.90.20220207-1+rpi1 binutils-common_2.37.90.20220207-1+rpi1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20220215 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3 dpkg_1.21.1+rpi1 dpkg-dev_1.21.1+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3 gpg_2.2.27-3 gpg-agent_2.2.27-3 gpg-wks-client_2.2.27-3 gpg-wks-server_2.2.27-3 gpgconf_2.2.27-3 gpgsm_2.2.27-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.15 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1 libbigwig-dev_0.4.6+dfsg-1 libbigwig0_0.4.6+dfsg-1 libbinutils_2.37.90.20220207-1+rpi1 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-5+rpi1 libc-dev-bin_2.33-5+rpi1 libc6_2.33-5+rpi1 libc6-dev_2.33-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.37.90.20220207-1+rpi1 libctf0_2.37.90.20220207-1+rpi1 libcurl3-gnutls_7.81.0-1 libcurl4-gnutls-dev_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdpkg-perl_1.21.1+rpi1 libedit2_3.1-20210910-1 libelf1_0.186-1 libexpat1_2.4.4-1 libexpat1-dev_2.4.4-1 libext2fs2_1.46.5-2 libfakeroot_1.27-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-16+rpi1 libgcc-s1_11.2.0-16+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_11.2.0-16+rpi1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-16+rpi1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc_4.3.2-1 libjs-underscore_1.13.2~dfsg-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-2 libldap-2.4-2_2.4.59+dfsg-1+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libpsl5_0.21.0-1.2 libpython3-all-dev_3.9.8-1 libpython3-dev_3.9.8-1 libpython3-stdlib_3.9.8-1 libpython3.10_3.10.2-1 libpython3.10-dev_3.10.2-1 libpython3.10-minimal_3.10.2-1 libpython3.10-stdlib_3.10.2-1 libpython3.9_3.9.10-2+rpi1 libpython3.9-dev_3.9.10-2+rpi1 libpython3.9-minimal_3.9.10-2+rpi1 libpython3.9-stdlib_3.9.10-2+rpi1 libreadline8_8.1.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg2-3 libsasl2-modules-db_2.1.27+dfsg2-3 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.3-1 libsqlite3-0_3.37.2-2 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.3-2+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.3-2+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libxml2_2.9.13+dfsg-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.15.15-2+rpi1 login_1:4.11.1+dfsg1-1 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.1-1 mawk_1.3.4.20200120-3 media-types_5.0.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 passwd_1:4.11.1+dfsg1-1 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.8-1 python3-all_3.9.8-1 python3-all-dev_3.9.8-1 python3-dev_3.9.8-1 python3-distutils_3.9.10-1 python3-lib2to3_3.9.10-1 python3-minimal_3.9.8-1 python3-numpy_1:1.21.5-1 python3-pkg-resources_59.6.0-1.2 python3-setuptools_59.6.0-1.2 python3.10_3.10.2-1 python3.10-dev_3.10.2-1 python3.10-minimal_3.10.2-1 python3.9_3.9.10-2+rpi1 python3.9-dev_3.9.10-2+rpi1 python3.9-minimal_3.9.10-2+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.3-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pybigwig
Binary: python3-pybigwig
Architecture: any
Version: 0.3.18+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Diane Trout <diane@ghic.org>
Homepage: https://github.com/dpryan79/pyBigWig
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/pybigwig
Vcs-Git: https://salsa.debian.org/med-team/pybigwig.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-all
Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
Package-List:
python3-pybigwig deb science optional arch=any
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Files:
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.wzGHMw9h/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 17 15:35:18 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./pybigwig_0.3.18+dfsg-1.dsc
dpkg-source: info: extracting pybigwig in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pybigwig_0.3.18+dfsg.orig.tar.gz
dpkg-source: info: unpacking pybigwig_0.3.18+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying prepareForExternalLibBigWig.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=12b0d11b34b646c0abd5fc586dfab6e4
JOURNAL_STREAM=8:22125
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4a50c40f-5949-4910-b362-c1ea2422fa8a
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c57833
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package pybigwig
dpkg-buildpackage: info: source version 0.3.18+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from pybigwig-0.3.18+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:237: python3.10 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.10/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
I: pybuild base:237: python3.9 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:237: python3.10 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.10/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running config
I: pybuild base:237: python3.9 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3.10 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.10/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
running egg_info
creating pyBigWig.egg-info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
creating build
creating build/temp.linux-armhf-3.10
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IlibBigWig -I/usr/include/python3.10 -I/usr/include/python3.10 -c pyBigWig.c -o build/temp.linux-armhf-3.10/pyBigWig.o
pyBigWig.c: In function ‘PyString_AsString’:
pyBigWig.c:773:12: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
773 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
pyBigWig.c: In function ‘Numeric2Uint’:
pyBigWig.c:798:10: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
798 | if(l > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function ‘pyBwAddHeader’:
pyBigWig.c:883:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
883 | if(zoomTmp > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function ‘PyAddIntervals’:
pyBigWig.c:1257:19: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
1257 | for(i=0; i<n; i++) free(cchroms[i]);
| ^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/pyBigWig.o -L/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf -lBigWig -lm -lz -lpython3.10 -lcurl -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWig.cpython-310-arm-linux-gnueabihf.so
I: pybuild base:237: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build/temp.linux-armhf-3.9
compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c'
arm-linux-gnueabihf-gcc: pyBigWig.c
pyBigWig.c: In function ‘PyString_AsString’:
pyBigWig.c:773:12: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
773 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
pyBigWig.c: In function ‘Numeric2Uint’:
pyBigWig.c:798:10: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
798 | if(l > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function ‘pyBwAddHeader’:
pyBigWig.c:883:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
883 | if(zoomTmp > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function ‘PyAddIntervals’:
pyBigWig.c:1257:19: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
1257 | for(i=0; i<n; i++) free(cchroms[i]);
| ^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lBigWig -lm -lz -lpython3.9 -lcurl -lnpymath -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWig.cpython-39-arm-linux-gnueabihf.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build; python3.10 -m unittest discover -v
pyBigWigTest.test (unittest.loader._FailedTest) ... ERROR
======================================================================
ERROR: pyBigWigTest.test (unittest.loader._FailedTest)
----------------------------------------------------------------------
ImportError: Failed to import test module: pyBigWigTest.test
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 22, in <module>
from . import multiarray
File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 12, in <module>
from . import overrides
File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 7, in <module>
from numpy.core._multiarray_umath import (
ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.10/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/usr/lib/python3.10/unittest/loader.py", line 377, in _get_module_from_name
__import__(name)
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest/test.py", line 6, in <module>
import numpy as np
File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 150, in <module>
from . import core
File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 48, in <module>
raise ImportError(msg)
ImportError:
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy C-extensions failed. This error can happen for
many reasons, often due to issues with your setup or how NumPy was
installed.
We have compiled some common reasons and troubleshooting tips at:
https://numpy.org/devdocs/user/troubleshooting-importerror.html
Please note and check the following:
* The Python version is: Python3.10 from "/usr/bin/python3.10"
* The NumPy version is: "1.21.5"
and make sure that they are the versions you expect.
Please carefully study the documentation linked above for further help.
Original error was: No module named 'numpy.core._multiarray_umath'
----------------------------------------------------------------------
Ran 1 test in 0.001s
FAILED (errors=1)
E: pybuild pybuild:367: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build; python3.10 -m unittest discover -v
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" returned exit code 13
make: *** [debian/rules:11: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2022-03-05T06:48:00Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 1032
Build-Time: 21
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 554
Job: pybigwig_0.3.18+dfsg-1
Machine Architecture: armhf
Package: pybigwig
Package-Time: 608
Source-Version: 0.3.18+dfsg-1
Space: 1032
Status: attempted
Version: 0.3.18+dfsg-1
--------------------------------------------------------------------------------
Finished at 2022-03-05T06:48:00Z
Build needed 00:10:08, 1032k disk space