pybigwig →
0.3.18+dfsg-1+b3 →
armhf → 2023-02-26 15:58:58
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| pybigwig 0.3.18+dfsg-1+b3 (armhf) Sun, 26 Feb 2023 15:45:03 +0000 |
+==============================================================================+
Package: pybigwig
Version: 0.3.18+dfsg-1+b3
Source Version: 0.3.18+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-d237a99a-00e7-4009-84cf-1c7479cc9e4c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.5 MB]
Fetched 28.3 MB in 28s (995 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pybigwig' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pybigwig.git
Please use:
git clone https://salsa.debian.org/med-team/pybigwig.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 37.3 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (dsc) [2168 B]
Get:2 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (tar) [30.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (diff) [4228 B]
Fetched 37.3 kB in 0s (406 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pybigwig-sRKW33/pybigwig-0.3.18+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-sRKW33' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-5tbIa2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-5tbIa2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-5tbIa2/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2720 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12765 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
dpkg-deb: building package 'sbuild-build-depends-pybigwig-dummy' in '/<<BUILDDIR>>/resolver-5tbIa2/apt_archive/sbuild-build-depends-pybigwig-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pybigwig-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Sources [549 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ Packages [629 B]
Fetched 2511 B in 1s (3277 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pybigwig build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbigwig-dev
libbigwig0 libblas3 libblkid1 libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev
libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libmount1
libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib librtmp1 libsmartcols1 libssh2-1 libsub-override-perl
libtool libuchardet0 libuuid1 libxml2 m4 man-db media-types mount po-debconf
python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.11 python3.11-dev python3.11-minimal util-linux
util-linux-extra zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config cryptsetup-bin libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser nfs-common
libmail-box-perl python3-doc python3-tk python3-venv gfortran python3-pytest
python-setuptools-doc python3.11-venv python3.11-doc binfmt-support
dosfstools kbd util-linux-locales
Recommended packages:
curl | wget | lynx curl ca-certificates libarchive-cpio-perl
javascript-common publicsuffix libltdl-dev uuid-runtime
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbigwig-dev
libbigwig0 libblas3 libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev
libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1
libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib librtmp1 libssh2-1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all
python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-numpy python3-pkg-resources python3-setuptools
python3.11 python3.11-dev python3.11-minimal
sbuild-build-depends-pybigwig-dummy zlib1g-dev
The following packages will be upgraded:
bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux
util-linux-extra
8 upgraded, 70 newly installed, 0 to remove and 8 not upgraded.
Need to get 40.1 MB of archives.
After this operation, 155 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5tbIa2/apt_archive ./ sbuild-build-depends-pybigwig-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-5 [84.2 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-5 [90.9 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-5 [97.5 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-5 [1063 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-5 [125 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.2-4 [797 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.2-4 [1681 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.2-1 [26.0 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf media-types all 10.0.0 [26.1 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-5 [27.1 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.2-4 [1668 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.2-4 [572 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.2-1 [9012 B]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.2-1 [26.0 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-5 [131 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-5 [143 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-11 [156 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-11 [495 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-11 [1204 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.11.2-2 [131 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20230130 [104 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.87.0-2 [328 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libbigwig0 armhf 0.4.7+dfsg-3 [24.4 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbigwig-dev armhf 0.4.7+dfsg-3 [32.8 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.87.0-2 [405 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 5.3.0-3 [130 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11 armhf 3.11.2-4 [1666 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-dev armhf 3.11.2-4 [3374 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.11.2-1 [9248 B]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.11.2-1 [1064 B]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.11.2-1 [1060 B]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf python3.11-dev armhf 3.11.2-4 [616 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.11.2-1 [26.2 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.11.2-1 [1068 B]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 66.1.1-1 [296 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 66.1.1-1 [521 kB]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12765 files and directories currently installed.)
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(Reading database ... 12765 files and directories currently installed.)
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi1 dpkg-dev_1.21.20+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-8+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.131 apt_2.5.5 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi1 binutils-arm-linux-gnueabihf_2.40-2+rpi1 binutils-common_2.40-2+rpi1 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1 dpkg_1.21.20+rpi1 dpkg-dev_1.21.20+rpi1 dwz_0.15-1 e2fsprogs_1.46.6-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-11 gettext-base_0.21-11 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-5 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-3 libapt-pkg6.0_2.5.5 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b1 libbigwig-dev_0.4.7+dfsg-3 libbigwig0_0.4.7+dfsg-3 libbinutils_2.40-2+rpi1 libblas3_3.11.0-2 libblkid1_2.38.1-5 libboost-iostreams1.74.0_1.74.0+ds1-20 libbrotli1_1.0.9-2+b3 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-8+rpi1 libc-dev-bin_2.36-8+rpi1 libc6_2.36-8+rpi1 libc6-dev_2.36-8+rpi1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-3 libcap2-bin_1:2.66-3 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.46.6-1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi1 libctf0_2.40-2+rpi1 libcurl3-gnutls_7.87.0-2 libcurl4-gnutls-dev_7.87.0-2 libcwidget4_0.5.18-6 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.267 libdebhelper-perl_13.11.4 libdpkg-perl_1.21.20+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.46.6-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-5 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_5.3.0-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.3-2 liblapack3_3.11.0-2 libldap-2.4-2_2.4.59+dfsg-1+b1 libldap-2.5-0_2.5.13+dfsg-5+rpi1 libldap-common_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.4.1-0.1 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-2 libpam-cap_1:2.66-3 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpsl5_0.21.2-1 libpython3-all-dev_3.11.2-1 libpython3-dev_3.11.2-1 libpython3-stdlib_3.11.2-1 libpython3.11_3.11.2-4 libpython3.11-dev_3.11.2-4 libpython3.11-minimal_3.11.2-4 libpython3.11-stdlib_3.11.2-4 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.4-2 libsigc++-2.0-0v5_2.12.0-1 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-1 libss2_1.46.6-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.8-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.5-2+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.5-2+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-5 libxapian30_1.4.22-1 libxml2_2.9.14+dfsg-1.1+b1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6-1 lsb-base_11.4+rpi1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_10.0.0 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4-2 ncurses-bin_6.4-2 netbase_6.4 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.2-1 python3-all_3.11.2-1 python3-all-dev_3.11.2-1 python3-dev_3.11.2-1 python3-distutils_3.11.2-2 python3-lib2to3_3.11.2-2 python3-minimal_3.11.2-1 python3-numpy_1:1.24.2-1 python3-pkg-resources_66.1.1-1 python3-setuptools_66.1.1-1 python3.11_3.11.2-4 python3.11-dev_3.11.2-4 python3.11-minimal_3.11.2-4 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pybigwig-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sgml-base_1.31 sysvinit-utils_3.06-2 tar_1.34+dfsg-1 tzdata_2022g-5 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 xz-utils_5.4.1-0.1 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Thu Feb 17 15:35:18 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.18+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting pybigwig in /<<BUILDDIR>>/pybigwig-0.3.18+dfsg
dpkg-source: info: unpacking pybigwig_0.3.18+dfsg.orig.tar.gz
dpkg-source: info: unpacking pybigwig_0.3.18+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying prepareForExternalLibBigWig.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3.18+dfsg-1+b3
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-d237a99a-00e7-4009-84cf-1c7479cc9e4c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pybigwig
dpkg-buildpackage: info: source version 0.3.18+dfsg-1+b3
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from pybigwig-0.3.18+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
/<<BUILDDIR>>/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
from numpy.distutils.misc_util import get_info
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running clean
removing '/<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
/<<BUILDDIR>>/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
from numpy.distutils.misc_util import get_info
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
/<<BUILDDIR>>/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
from numpy.distutils.misc_util import get_info
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running build
running build_py
creating /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest
running egg_info
creating pyBigWig.egg-info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pybigwig-0.3.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build
creating build/temp.linux-armhf-cpython-311
INFO: compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c'
INFO: arm-linux-gnueabihf-gcc: pyBigWig.c
pyBigWig.c: In function 'PyString_AsString':
pyBigWig.c:773:12: warning: return discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
773 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
pyBigWig.c: In function 'Numeric2Uint':
pyBigWig.c:798:10: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
798 | if(l > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function 'pyBwAddHeader':
pyBigWig.c:883:20: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
883 | if(zoomTmp > 0xFFFFFFFF) {
| ^
pyBigWig.c:897:32: warning: passing argument 1 of 'bwCreateChromList' from incompatible pointer type [-Wincompatible-pointer-types]
897 | bw->cl = bwCreateChromList(chroms, lengths, n);
| ^~~~~~
| |
| char **
In file included from pyBigWig.h:3,
from pyBigWig.c:3:
/usr/include/bigWig.h:497:51: note: expected 'const char * const*' but argument is of type 'char **'
497 | chromList_t *bwCreateChromList(const char* const* chroms, const uint32_t *lengths, int64_t n);
| ~~~~~~~~~~~~~~~~~~~^~~~~~
pyBigWig.c: In function 'PyAddIntervals':
pyBigWig.c:1251:29: warning: passing argument 2 of 'bwAddIntervals' from incompatible pointer type [-Wincompatible-pointer-types]
1251 | rv = bwAddIntervals(bw, cchroms, ustarts, uends, fvalues, n);
| ^~~~~~~
| |
| char **
/usr/include/bigWig.h:524:57: note: expected 'const char * const*' but argument is of type 'char **'
524 | int bwAddIntervals(bigWigFile_t *fp, const char* const* chrom, const uint32_t *start, const uint32_t *end, const float *values, uint32_t n);
| ~~~~~~~~~~~~~~~~~~~^~~~~
pyBigWig.c:1257:19: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
1257 | for(i=0; i<n; i++) free(cchroms[i]);
| ^
INFO: arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/pybigwig-0.3.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lBigWig -lm -lz -lpython3.11 -lcurl -lnpymath -lm -o /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWig.cpython-311-arm-linux-gnueabihf.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:240: cd /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build; python3.11 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/pybigwig-0.3.18+dfsg'
dh_auto_install
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig
/<<BUILDDIR>>/pybigwig-0.3.18+dfsg/setup.py:8: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
from numpy.distutils.misc_util import get_info
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr
creating /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib
creating /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11
creating /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages
creating /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest
copying /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/__init__.py -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest
copying /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/test.py -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest
copying /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/test.bigBed -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest
copying /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/test.bw -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest
creating /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__pycache__
copying /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-311.pyc -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__pycache__
copying /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-311.pyc -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__pycache__
copying /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/.pybuild/cpython3_3.11_pybigwig/build/pyBigWig.cpython-311-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages
byte-compiling /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWigTest/test.py to test.cpython-311.pyc
running install_egg_info
Copying pyBigWig.egg-info to /<<BUILDDIR>>/pybigwig-0.3.18+dfsg/debian/python3-pybigwig/usr/lib/python3.11/dist-packages/pyBigWig-0.3.18.egg-info
Skipping SOURCES.txt
running install_scripts
dh_numpy3
make[1]: Leaving directory '/<<BUILDDIR>>/pybigwig-0.3.18+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 pydist:487: Skipping section [numpy input], unable to parse header
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybigwig-dbgsym' in '../python3-pybigwig-dbgsym_0.3.18+dfsg-1+b3_armhf.deb'.
dpkg-deb: building package 'python3-pybigwig' in '../python3-pybigwig_0.3.18+dfsg-1+b3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../pybigwig_0.3.18+dfsg-1+b3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../pybigwig_0.3.18+dfsg-1+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from pybigwig-0.3.18+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-02-26T15:58:52Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pybigwig_0.3.18+dfsg-1+b3_armhf.changes:
----------------------------------------
Format: 1.8
Date: Thu, 17 Feb 2022 16:32:40 +0100
Source: pybigwig (0.3.18+dfsg-1)
Binary: python3-pybigwig python3-pybigwig-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.3.18+dfsg-1+b3
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files
Changes:
pybigwig (0.3.18+dfsg-1+b3) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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Checksums-Sha256:
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Files:
dbfe5ba33c46072c57cec8374a518ab4 6983 science optional pybigwig_0.3.18+dfsg-1+b3_armhf.buildinfo
30a6457fc8abc57b725aaeb24232b026 51244 debug optional python3-pybigwig-dbgsym_0.3.18+dfsg-1+b3_armhf.deb
761565fe7066ba22b32a4190c329d1fd 30600 science optional python3-pybigwig_0.3.18+dfsg-1+b3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pybigwig-dbgsym_0.3.18+dfsg-1+b3_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 51244 bytes: control archive=556 bytes.
431 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-pybigwig-dbgsym
Source: pybigwig (0.3.18+dfsg-1)
Version: 0.3.18+dfsg-1+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 71
Depends: python3-pybigwig (= 0.3.18+dfsg-1+b3)
Section: debug
Priority: optional
Description: debug symbols for python3-pybigwig
Build-Ids: 30be52c64f83b0982bcc1ecb65c6a5b7c423c484
drwxr-xr-x root/root 0 2022-02-17 15:32 ./
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/debug/.build-id/30/
-rw-r--r-- root/root 62156 2022-02-17 15:32 ./usr/lib/debug/.build-id/30/be52c64f83b0982bcc1ecb65c6a5b7c423c484.debug
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/share/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-02-17 15:32 ./usr/share/doc/python3-pybigwig-dbgsym -> python3-pybigwig
python3-pybigwig_0.3.18+dfsg-1+b3_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 30600 bytes: control archive=1924 bytes.
1815 bytes, 31 lines control
1120 bytes, 12 lines md5sums
279 bytes, 12 lines * postinst #!/bin/sh
392 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pybigwig
Source: pybigwig (0.3.18+dfsg-1)
Version: 0.3.18+dfsg-1+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 136
Depends: python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3 (<< 3.12), python3 (>= 3.11~), python3:any, libbigwig0 (>= 0.4.6), libc6 (>= 2.35), libpython3.11 (>= 3.11.0)
Section: science
Priority: optional
Homepage: https://github.com/dpryan79/pyBigWig
Description: Python 3 module for quick access to bigBed and bigWig files
This is a Python extension, written in C, for quick access to bigBed files,
and access to and creation of bigWig files.
.
The bigWig format was originally created in the context of genome
browsers. There, computing exact summary statistics for a given interval
is less important than quickly being able to compute an approximate
statistic. Because of this, bigWig files contain not only interval-value
associations, but also `sum of values`/`sum of squared values`/`minimum
value`/`maximum value`/`number of bases covered` for equally sized
bins of various sizes. These different sizes are referred to as "zoom
levels". The smallest zoom level has bins that are 16 times the mean
interval size in the file and each subsequent zoom level has bins 4 times
larger than the previous. This methodology is used in Kent's tools and,
therefore, likely used in almost every currently existing bigWig file.
.
When a bigWig file is queried for a summary statistic, the size of the
interval is used to determine whether to use a zoom level and, if so,
which one. The optimal zoom level is that which has the largest bins no
more than half the width of the desired interval. If no such zoom level
exists, the original intervals are instead used for the calculation.
drwxr-xr-x root/root 0 2022-02-17 15:32 ./
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/
-rw-r--r-- root/root 382 2022-02-17 15:32 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-02-17 15:32 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/dependency_links.txt
-rw-r--r-- root/root 21 2022-02-17 15:32 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/requires.txt
-rw-r--r-- root/root 22 2022-02-17 15:32 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/top_level.txt
-rw-r--r-- root/root 63440 2022-02-17 15:32 ./usr/lib/python3/dist-packages/pyBigWig.cpython-311-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/lib/python3/dist-packages/pyBigWigTest/
-rw-r--r-- root/root 0 2021-02-07 12:44 ./usr/lib/python3/dist-packages/pyBigWigTest/__init__.py
-rw-r--r-- root/root 27148 2021-02-07 12:44 ./usr/lib/python3/dist-packages/pyBigWigTest/test.bigBed
-rw-r--r-- root/root 12966 2021-02-07 12:44 ./usr/lib/python3/dist-packages/pyBigWigTest/test.bw
-rw-r--r-- root/root 13205 2021-02-07 12:44 ./usr/lib/python3/dist-packages/pyBigWigTest/test.py
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/share/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-17 15:32 ./usr/share/doc/python3-pybigwig/
-rw-r--r-- root/root 228 2022-02-17 15:32 ./usr/share/doc/python3-pybigwig/changelog.Debian.armhf.gz
-rw-r--r-- root/root 785 2022-02-17 15:32 ./usr/share/doc/python3-pybigwig/changelog.Debian.gz
-rw-r--r-- root/root 1461 2022-02-17 15:32 ./usr/share/doc/python3-pybigwig/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1100
Build-Time: 88
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 687
Job: pybigwig_0.3.18+dfsg-1
Machine Architecture: armhf
Package: pybigwig
Package-Time: 829
Source-Version: 0.3.18+dfsg-1
Space: 1100
Status: successful
Version: 0.3.18+dfsg-1+b3
--------------------------------------------------------------------------------
Finished at 2023-02-26T15:58:52Z
Build needed 00:13:49, 1100k disc space