pybigwig →
0.3.18+dfsg-1+b1 →
armhf → 2022-08-26 04:18:26
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| pybigwig 0.3.18+dfsg-1+b1 (armhf) Fri, 26 Aug 2022 04:07:12 +0000 |
+==============================================================================+
Package: pybigwig
Version: 0.3.18+dfsg-1+b1
Source Version: 0.3.18+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-c8aeaaf0-0be5-4f54-a9df-c99e8487ceba' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-9HmZjA/resolver-saOY6z' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.2 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 21s (1332 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pybigwig' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pybigwig.git
Please use:
git clone https://salsa.debian.org/med-team/pybigwig.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 37.3 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (dsc) [2168 B]
Get:2 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (tar) [30.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.18+dfsg-1 (diff) [4228 B]
Fetched 37.3 kB in 0s (267 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pybigwig-9HmZjA/pybigwig-0.3.18+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-9HmZjA' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [425 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [508 B]
Fetched 1890 B in 0s (23.9 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dmsetup dwz file gettext
gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl
libargon2-1 libbigwig-dev libbigwig0 libblas3 libbrotli1 libcryptsetup12
libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdevmapper1.02.1
libelf1 libexpat1 libexpat1-dev libfdisk1 libfile-stripnondeterminism-perl
libgfortran5 libicu71 libip4tc2 libjs-jquery libjs-sphinxdoc
libjs-underscore libjson-c5 libkmod2 liblapack3 libmagic-mgc libmagic1
libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev
libpython3.10-minimal libpython3.10-stdlib librtmp1 libssh2-1
libsub-override-perl libsystemd-shared libtool libuchardet0 libxml2 m4
man-db media-types po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-pkg-resources python3-setuptools python3.10 python3.10-dev
python3.10-minimal systemd zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-pytest python-setuptools-doc python3.10-venv
python3.10-doc binfmt-support systemd-container systemd-homed
systemd-userdbd systemd-boot libfido2-1 libtss2-esys-3.0.2-0 libtss2-mu0
libtss2-rc0 policykit-1
Recommended packages:
curl | wget | lynx curl ca-certificates libarchive-cpio-perl
javascript-common publicsuffix libltdl-dev libmail-sendmail-perl
default-dbus-system-bus | dbus-system-bus systemd-timesyncd | time-daemon
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dmsetup dwz file gettext
gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl
libargon2-1 libbigwig-dev libbigwig0 libblas3 libbrotli1 libcryptsetup12
libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdevmapper1.02.1
libelf1 libexpat1 libexpat1-dev libfdisk1 libfile-stripnondeterminism-perl
libgfortran5 libicu71 libip4tc2 libjs-jquery libjs-sphinxdoc
libjs-underscore libjson-c5 libkmod2 liblapack3 libmagic-mgc libmagic1
libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev
libpython3.10-minimal libpython3.10-stdlib librtmp1 libssh2-1
libsub-override-perl libsystemd-shared libtool libuchardet0 libxml2 m4
man-db media-types po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-pkg-resources python3-setuptools python3.10 python3.10-dev
python3.10-minimal sbuild-build-depends-main-dummy systemd zlib1g-dev
0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded.
Need to get 42.0 MB of archives.
After this operation, 171 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libargon2-1 armhf 0~20171227-0.3 [19.6 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf dmsetup armhf 2:1.02.185-1 [91.8 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.185-1 [134 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libjson-c5 armhf 0.16-1 [40.0 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libcryptsetup12 armhf 2:2.5.0-2 [225 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libfdisk1 armhf 2.38.1-1 [237 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libkmod2 armhf 30+20220630-3 [51.8 kB]
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Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
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Get:30 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
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Get:37 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9 [195 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
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Get:42 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
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Get:44 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-8 [1219 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9 [1070 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.6-1 [79.9 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.6-1 [141 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.48.0-2 [72.1 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.84.0-2 [315 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libbigwig0 armhf 0.4.6+dfsg-1 [23.6 kB]
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Get:63 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
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Get:67 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
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Get:70 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.6-1 [1456 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.6-1 [2991 kB]
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Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.6-1 [509 kB]
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Get:80 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b2 [3423 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libpython3.10-stdlib:armhf (3.10.6-1) ...
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Setting up libcryptsetup12:armhf (2:2.5.0-2) ...
Setting up systemd (251.3-1+rpi1) ...
Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service.
Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service.
Initializing machine ID from random generator.
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Processing triggers for libc-bin (2.33-8+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.1.0-7+rpi1 gcc-12_12.1.0-7+rpi1 libc6-dev_2.33-8+rpi1 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 linux-libc-dev_5.18.14-1+rpi1
Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.1-6.1 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.1.0-7+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.35-3 dmsetup_2:1.02.185-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3+rpi1 g++-12_12.1.0-7+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.1.0-7+rpi1 gcc-12-base_12.1.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-8 gettext-base_0.21-8 gnupg_2.2.35-3 gnupg-l10n_2.2.35-3 gnupg-utils_2.2.35-3 gpg_2.2.35-3 gpg-agent_2.2.35-3 gpg-wks-client_2.2.35-3 gpg-wks-server_2.2.35-3 gpgconf_2.2.35-3 gpgsm_2.2.35-3 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.1.0-7+rpi1 libassuan0_2.5.5-4 libatomic1_12.1.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbigwig-dev_0.4.6+dfsg-1 libbigwig0_0.4.6+dfsg-1 libbinutils_2.38.90.20220713-2+rpi1 libblas3_3.10.1-2 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.33-8+rpi1 libc-dev-bin_2.33-8+rpi1 libc6_2.33-8+rpi1 libc6-dev_2.33-8+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-7+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libcurl3-gnutls_7.84.0-2 libcurl4-gnutls-dev_7.84.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.9 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.1.0-7+rpi1 libgcc-s1_12.1.0-7+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12.1.0-7+rpi1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.1.0-7+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libip4tc2_1.8.8-1 libisl23_0.25-1 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc_4.5.0-4 libjs-underscore_1.13.3~dfsg+~1.11.4-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack3_3.10.1-2 libldap-2.5-0_2.5.12+dfsg-2 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.48.0-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.32_5.32.1-6 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libpsl5_0.21.0-1.2 libpython3-all-dev_3.10.6-1 libpython3-dev_3.10.6-1 libpython3-stdlib_3.10.6-1 libpython3.10_3.10.6-1 libpython3.10-dev_3.10.6-1 libpython3.10-minimal_3.10.6-1 libpython3.10-stdlib_3.10.6-1 libreadline8_8.1.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-7 libsasl2-modules-db_2.1.28+dfsg-7 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 libsub-override-perl_0.09-3 libsystemd-shared_251.3-1+rpi1 libsystemd0_251.3-1+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.1.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-all_3.10.6-1 python3-all-dev_3.10.6-1 python3-dev_3.10.6-1 python3-distutils_3.10.6-1 python3-lib2to3_3.10.6-1 python3-minimal_3.10.6-1 python3-numpy_1:1.21.5-1+b2 python3-pkg-resources_59.6.0-1.2 python3-setuptools_59.6.0-1.2 python3.10_3.10.6-1 python3.10-dev_3.10.6-1 python3.10-minimal_3.10.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.3-1+rpi1 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pybigwig
Binary: python3-pybigwig
Architecture: any
Version: 0.3.18+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Diane Trout <diane@ghic.org>
Homepage: https://github.com/dpryan79/pyBigWig
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/pybigwig
Vcs-Git: https://salsa.debian.org/med-team/pybigwig.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-all
Build-Depends: debhelper-compat (= 13), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
Package-List:
python3-pybigwig deb science optional arch=any
Checksums-Sha1:
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de10301503ed14b7c11e9f987722c1ae61f91f3a 4228 pybigwig_0.3.18+dfsg-1.debian.tar.xz
Checksums-Sha256:
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5255afd56b746f2b91ed8a3173511f5e943a8126d22cd1dcf1cd3a6e5e31d54e 4228 pybigwig_0.3.18+dfsg-1.debian.tar.xz
Files:
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7d6b5363e1ea463d63f181fdcc014f43 4228 pybigwig_0.3.18+dfsg-1.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.ZzjXBHUQ/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 17 15:35:18 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./pybigwig_0.3.18+dfsg-1.dsc
dpkg-source: info: extracting pybigwig in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pybigwig_0.3.18+dfsg.orig.tar.gz
dpkg-source: info: unpacking pybigwig_0.3.18+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying prepareForExternalLibBigWig.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3.18+dfsg-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=b1a4a50b076d45168d85858aa150e93f
JOURNAL_STREAM=8:26928
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-c8aeaaf0-0be5-4f54-a9df-c99e8487ceba
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c62511
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package pybigwig
dpkg-buildpackage: info: source version 0.3.18+dfsg-1+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from pybigwig-0.3.18+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.10 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.10/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.10 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.10/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.10/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
running egg_info
creating pyBigWig.egg-info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build
creating build/temp.linux-armhf-3.10
compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c'
arm-linux-gnueabihf-gcc: pyBigWig.c
pyBigWig.c: In function ‘PyString_AsString’:
pyBigWig.c:773:12: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
773 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
pyBigWig.c: In function ‘Numeric2Uint’:
pyBigWig.c:798:10: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
798 | if(l > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function ‘pyBwAddHeader’:
pyBigWig.c:883:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
883 | if(zoomTmp > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function ‘PyAddIntervals’:
pyBigWig.c:1257:19: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
1257 | for(i=0; i<n; i++) free(cchroms[i]);
| ^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/python3.10/config-3.10-arm-linux-gnueabihf -lBigWig -lm -lz -lpython3.10 -lcurl -lnpymath -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWig.cpython-310-arm-linux-gnueabihf.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build; python3.10 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybigwig
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.10/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-310.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pybigwig/build/pyBigWig.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWigTest/test.py to test.cpython-310.pyc
running install_egg_info
Copying pyBigWig.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.10/dist-packages/pyBigWig-0.3.18.egg-info
Skipping SOURCES.txt
running install_scripts
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 pydist:467: Skipping section [numpy input], unable to parse header
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybigwig' in '../python3-pybigwig_0.3.18+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'python3-pybigwig-dbgsym' in '../python3-pybigwig-dbgsym_0.3.18+dfsg-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../pybigwig_0.3.18+dfsg-1+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../pybigwig_0.3.18+dfsg-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from pybigwig-0.3.18+dfsg/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-08-26T04:18:16Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pybigwig_0.3.18+dfsg-1+b1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Fri, 26 Aug 2022 04:17:32 +0000
Source: pybigwig (0.3.18+dfsg-1)
Binary: python3-pybigwig python3-pybigwig-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.3.18+dfsg-1+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Raspbian pi4 based autobuilder <root@raspbian.org>
Description:
python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files
Changes:
pybigwig (0.3.18+dfsg-1+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: pybigwig (0.3.18+dfsg-1)
Binary: python3-pybigwig python3-pybigwig-dbgsym
Architecture: armhf
Version: 0.3.18+dfsg-1+b1
Binary-Only-Changes:
pybigwig (0.3.18+dfsg-1+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
.
-- Raspbian pi4 based autobuilder <root@raspbian.org> Fri, 26 Aug 2022 04:17:32 +0000
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 26 Aug 2022 04:18:14 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
adduser (= 3.123),
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-8),
autotools-dev (= 20220109.1),
base-files (= 12.2+rpi1),
base-passwd (= 3.6.0),
bash (= 5.1-6.1),
binutils (= 2.38.90.20220713-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.38.90.20220713-2+rpi1),
binutils-common (= 2.38.90.20220713-2+rpi1),
bsdextrautils (= 2.38.1-1),
bsdutils (= 1:2.38.1-1),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 8.32-4.1),
cpp (= 4:12.1.0-3+rpi1),
cpp-12 (= 12.1.0-7+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-8),
debconf (= 1.5.79),
debhelper (= 13.9),
debianutils (= 5.7-0.3),
dh-autoreconf (= 20),
dh-python (= 5.20220819+rpi1),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.8-1),
dmsetup (= 2:1.02.185-1),
dpkg (= 1.21.9+rpi1),
dpkg-dev (= 1.21.9+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
g++ (= 4:12.1.0-3+rpi1),
g++-12 (= 12.1.0-7+rpi1),
gcc (= 4:12.1.0-3+rpi1),
gcc-12 (= 12.1.0-7+rpi1),
gcc-12-base (= 12.1.0-7+rpi1),
gettext (= 0.21-8),
gettext-base (= 0.21-8),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.12-1),
hostname (= 3.23),
init-system-helpers (= 1.64),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libapparmor1 (= 3.0.7-1),
libarchive-zip-perl (= 1.68-1),
libargon2-1 (= 0~20171227-0.3),
libasan8 (= 12.1.0-7+rpi1),
libatomic1 (= 12.1.0-7+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1),
libaudit1 (= 1:3.0.7-1+b1),
libbigwig-dev (= 0.4.6+dfsg-1),
libbigwig0 (= 0.4.6+dfsg-1),
libbinutils (= 2.38.90.20220713-2+rpi1),
libblas3 (= 3.10.1-2),
libblkid1 (= 2.38.1-1),
libbrotli1 (= 1.0.9-2+b2),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.33-8+rpi1),
libc-dev-bin (= 2.33-8+rpi1),
libc6 (= 2.33-8+rpi1),
libc6-dev (= 2.33-8+rpi1),
libcap-ng0 (= 0.8.3-1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.1.0-7+rpi1),
libcom-err2 (= 1.46.5-2),
libcrypt-dev (= 1:4.4.28-2),
libcrypt1 (= 1:4.4.28-2),
libcryptsetup12 (= 2:2.5.0-2),
libctf-nobfd0 (= 2.38.90.20220713-2+rpi1),
libctf0 (= 2.38.90.20220713-2+rpi1),
libcurl3-gnutls (= 7.84.0-2),
libcurl4-gnutls-dev (= 7.84.0-2),
libdb5.3 (= 5.3.28+dfsg1-0.10),
libdebconfclient0 (= 0.263),
libdebhelper-perl (= 13.9),
libdevmapper1.02.1 (= 2:1.02.185-1),
libdpkg-perl (= 1.21.9+rpi1),
libelf1 (= 0.187-1),
libexpat1 (= 2.4.8-1),
libexpat1-dev (= 2.4.8-1),
libfdisk1 (= 2.38.1-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libgcc-12-dev (= 12.1.0-7+rpi1),
libgcc-s1 (= 12.1.0-7+rpi1),
libgcrypt20 (= 1.10.1-2+b2),
libgdbm-compat4 (= 1.23-1),
libgdbm6 (= 1.23-1),
libgfortran5 (= 12.1.0-7+rpi1),
libgmp10 (= 2:6.2.1+dfsg1-1),
libgnutls30 (= 3.7.7-2),
libgomp1 (= 12.1.0-7+rpi1),
libgpg-error0 (= 1.45-2),
libgssapi-krb5-2 (= 1.20-1),
libhogweed6 (= 3.8.1-2),
libicu71 (= 71.1-3),
libidn2-0 (= 2.3.3-1),
libip4tc2 (= 1.8.8-1),
libisl23 (= 0.25-1),
libjs-jquery (= 3.6.0+dfsg+~3.5.13-1),
libjs-sphinxdoc (= 4.5.0-4),
libjs-underscore (= 1.13.3~dfsg+~1.11.4-1),
libjson-c5 (= 0.16-1),
libk5crypto3 (= 1.20-1),
libkeyutils1 (= 1.6.3-1),
libkmod2 (= 30+20220630-3),
libkrb5-3 (= 1.20-1),
libkrb5support0 (= 1.20-1),
liblapack3 (= 3.10.1-2),
libldap-2.5-0 (= 2.5.12+dfsg-2),
liblz4-1 (= 1.9.3-2),
liblzma5 (= 5.2.5-2.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmount1 (= 2.38.1-1),
libmpc3 (= 1.2.1-2),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libncursesw6 (= 6.3+20220423-2),
libnettle8 (= 3.8.1-2),
libnghttp2-14 (= 1.48.0-2),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.24.1-1),
libpam-modules (= 1.5.2-2),
libpam-modules-bin (= 1.5.2-2),
libpam-runtime (= 1.5.2-2),
libpam0g (= 1.5.2-2),
libpcre2-8-0 (= 10.40-1+b2),
libpcre3 (= 2:8.39-14),
libperl5.34 (= 5.34.0-5),
libpipeline1 (= 1.5.6-2),
libpsl5 (= 0.21.0-1.2),
libpython3-all-dev (= 3.10.6-1),
libpython3-dev (= 3.10.6-1),
libpython3-stdlib (= 3.10.6-1),
libpython3.10 (= 3.10.6-1),
libpython3.10-dev (= 3.10.6-1),
libpython3.10-minimal (= 3.10.6-1),
libpython3.10-stdlib (= 3.10.6-1),
libreadline8 (= 8.1.2-1.2),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg-7),
libsasl2-modules-db (= 2.1.28+dfsg-7),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsemanage-common (= 3.4-1),
libsemanage2 (= 3.4-1),
libsepol2 (= 3.4-2),
libsmartcols1 (= 2.38.1-1),
libsqlite3-0 (= 3.39.2-1),
libssh2-1 (= 1.10.0-3+b1),
libssl3 (= 3.0.5-2),
libstdc++-12-dev (= 12.1.0-7+rpi1),
libstdc++6 (= 12.1.0-7+rpi1),
libsub-override-perl (= 0.09-3),
libsystemd-shared (= 251.3-1+rpi1),
libsystemd0 (= 251.3-1+rpi1),
libtasn1-6 (= 4.18.0-4),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-4),
libubsan1 (= 12.1.0-7+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 251.3-1+rpi1),
libunistring2 (= 1.0-1),
libuuid1 (= 2.38.1-1),
libxml2 (= 2.9.14+dfsg-1),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 5.18.14-1+rpi1),
login (= 1:4.11.1+dfsg1-2),
lsb-base (= 11.2+rpi1),
m4 (= 1.4.19-1),
make (= 4.3-4.1),
man-db (= 2.10.2-2),
mawk (= 1.3.4.20200120-3.1),
media-types (= 8.0.0),
mount (= 2.38.1-1),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
passwd (= 1:4.11.1+dfsg1-2),
patch (= 2.7.6-7),
perl (= 5.34.0-5),
perl-base (= 5.34.0-5),
perl-modules-5.34 (= 5.34.0-5),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.10.6-1),
python3-all (= 3.10.6-1),
python3-all-dev (= 3.10.6-1),
python3-dev (= 3.10.6-1),
python3-distutils (= 3.10.6-1),
python3-lib2to3 (= 3.10.6-1),
python3-minimal (= 3.10.6-1),
python3-numpy (= 1:1.21.5-1+b2),
python3-pkg-resources (= 59.6.0-1.2),
python3-setuptools (= 59.6.0-1.2),
python3.10 (= 3.10.6-1),
python3.10-dev (= 3.10.6-1),
python3.10-minimal (= 3.10.6-1),
readline-common (= 8.1.2-1.2),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sgml-base (= 1.30),
systemd (= 251.3-1+rpi1),
sysvinit-utils (= 3.04-1),
tar (= 1.34+dfsg-1),
util-linux (= 2.38.1-1),
util-linux-extra (= 2.38.1-1),
xz-utils (= 5.2.5-2.1),
zlib1g (= 1:1.2.11.dfsg-4.1),
zlib1g-dev (= 1:1.2.11.dfsg-4.1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1661487452"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pybigwig-dbgsym_0.3.18+dfsg-1+b1_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 50132 bytes: control archive=556 bytes.
431 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-pybigwig-dbgsym
Source: pybigwig (0.3.18+dfsg-1)
Version: 0.3.18+dfsg-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 72
Depends: python3-pybigwig (= 0.3.18+dfsg-1+b1)
Section: debug
Priority: optional
Description: debug symbols for python3-pybigwig
Build-Ids: 575410eab7e05737532bc4828ad33e1a7675d503
drwxr-xr-x root/root 0 2022-08-26 04:17 ./
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/lib/
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drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-08-26 04:17 ./usr/share/doc/python3-pybigwig-dbgsym -> python3-pybigwig
python3-pybigwig_0.3.18+dfsg-1+b1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 31748 bytes: control archive=1924 bytes.
1820 bytes, 31 lines control
1120 bytes, 12 lines md5sums
279 bytes, 12 lines * postinst #!/bin/sh
392 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pybigwig
Source: pybigwig (0.3.18+dfsg-1)
Version: 0.3.18+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 140
Depends: python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libbigwig0 (>= 0.4.6+dfsg), libc6 (>= 2.29), libpython3.10 (>= 3.10.0)
Section: science
Priority: optional
Homepage: https://github.com/dpryan79/pyBigWig
Description: Python 3 module for quick access to bigBed and bigWig files
This is a Python extension, written in C, for quick access to bigBed files,
and access to and creation of bigWig files.
.
The bigWig format was originally created in the context of genome
browsers. There, computing exact summary statistics for a given interval
is less important than quickly being able to compute an approximate
statistic. Because of this, bigWig files contain not only interval-value
associations, but also `sum of values`/`sum of squared values`/`minimum
value`/`maximum value`/`number of bases covered` for equally sized
bins of various sizes. These different sizes are referred to as "zoom
levels". The smallest zoom level has bins that are 16 times the mean
interval size in the file and each subsequent zoom level has bins 4 times
larger than the previous. This methodology is used in Kent's tools and,
therefore, likely used in almost every currently existing bigWig file.
.
When a bigWig file is queried for a summary statistic, the size of the
interval is used to determine whether to use a zoom level and, if so,
which one. The optimal zoom level is that which has the largest bins no
more than half the width of the desired interval. If no such zoom level
exists, the original intervals are instead used for the calculation.
drwxr-xr-x root/root 0 2022-08-26 04:17 ./
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/lib/
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/
-rw-r--r-- root/root 427 2022-08-26 04:17 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-08-26 04:17 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/dependency_links.txt
-rw-r--r-- root/root 21 2022-08-26 04:17 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/requires.txt
-rw-r--r-- root/root 22 2022-08-26 04:17 ./usr/lib/python3/dist-packages/pyBigWig-0.3.18.egg-info/top_level.txt
-rw-r--r-- root/root 67536 2022-08-26 04:17 ./usr/lib/python3/dist-packages/pyBigWig.cpython-310-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/lib/python3/dist-packages/pyBigWigTest/
-rw-r--r-- root/root 0 2021-02-07 12:44 ./usr/lib/python3/dist-packages/pyBigWigTest/__init__.py
-rw-r--r-- root/root 27148 2021-02-07 12:44 ./usr/lib/python3/dist-packages/pyBigWigTest/test.bigBed
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drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/share/
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-08-26 04:17 ./usr/share/doc/python3-pybigwig/
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-rw-r--r-- root/root 857 2022-08-26 04:17 ./usr/share/doc/python3-pybigwig/changelog.Debian.gz
-rw-r--r-- root/root 1461 2022-02-17 15:32 ./usr/share/doc/python3-pybigwig/copyright
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build Type: any
Build-Space: 1076
Build-Time: 43
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 562
Job: pybigwig_0.3.18+dfsg-1
Machine Architecture: armhf
Package: pybigwig
Package-Time: 664
Source-Version: 0.3.18+dfsg-1
Space: 1076
Status: successful
Version: 0.3.18+dfsg-1+b1
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Finished at 2022-08-26T04:18:16Z
Build needed 00:11:04, 1076k disk space