pybigwig →
0.3.17-1+b3 →
armhf → 2022-01-26 00:38:16
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| pybigwig 0.3.17-1+b3 (armhf) Wed, 26 Jan 2022 00:26:26 +0000 |
+==============================================================================+
Package: pybigwig
Version: 0.3.17-1+b3
Source Version: 0.3.17-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-8375c9b3-0454-4833-8c80-46366cf04b54' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.3 MB in 27s (964 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pybigwig' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pybigwig.git
Please use:
git clone https://salsa.debian.org/med-team/pybigwig.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 35.7 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.17-1 (dsc) [2102 B]
Get:2 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.17-1 (tar) [29.6 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main pybigwig 0.3.17-1 (diff) [4024 B]
Fetched 35.7 kB in 0s (363 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pybigwig-koL6bf/pybigwig-0.3.17' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-koL6bf' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-blfr7X/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-blfr7X/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-blfr7X/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2792 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 94 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (10.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
Filtered Build-Depends: debhelper (>= 11), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
dpkg-deb: building package 'sbuild-build-depends-pybigwig-dummy' in '/<<BUILDDIR>>/resolver-blfr7X/apt_archive/sbuild-build-depends-pybigwig-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pybigwig-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Sources [547 B]
Get:5 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ Packages [628 B]
Fetched 2508 B in 1s (3321 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pybigwig build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gcc-11-base gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libasan6
libatomic1 libbigwig-dev libbigwig0 libblas3 libbrotli1 libcc1-0
libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgcc-s1 libgfortran5
libgomp1 libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librtmp1
libsigsegv2 libssh2-1 libstdc++6 libsub-override-perl libtool libubsan1
libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all
python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-numpy python3-pkg-resources python3-setuptools
python3.9 python3.9-dev python3.9-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev
groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-pytest python-setuptools-doc python3.9-venv
python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx curl ca-certificates libarchive-cpio-perl
javascript-common publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbigwig-dev
libbigwig0 libblas3 libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev
libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu67 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libmpdec3
libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-numpy python3-pkg-resources python3-setuptools
python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-pybigwig-dummy sensible-utils zlib1g-dev
The following packages will be upgraded:
gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6
libubsan1
8 upgraded, 73 newly installed, 0 to remove and 86 not upgraded.
Need to get 39.4 MB of archives.
After this operation, 142 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-blfr7X/apt_archive ./ sbuild-build-depends-pybigwig-dummy 0.invalid.0 [908 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.9-4+rpi1+b4 [795 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-13+rpi1 [1947 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-13+rpi1 [799 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-13+rpi1 [88.0 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-13+rpi1 [207 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-13+rpi1 [36.1 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-13+rpi1 [37.9 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-13+rpi1 [8196 B]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-13+rpi1 [467 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.3-1 [81.5 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.9-4+rpi1+b4 [1584 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.7-1+b4 [38.7 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.9-4+rpi1+b4 [1609 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.9-4+rpi1+b4 [485 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.7-1+b4 [21.8 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.7-1+b4 [38.3 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-6 [136 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220119 [110 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.81.0-1 [315 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libbigwig0 armhf 0.4.4+dfsg-2 [23.9 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libbigwig-dev armhf 0.4.4+dfsg-2 [12.5 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.81.0-1 [391 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.3-1 [136 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-13+rpi1 [235 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.2-1 [139 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.9-4+rpi1+b4 [1411 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.9-4+rpi1+b4 [3003 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.7-1+b4 [22.1 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.7-1+b4 [1068 B]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.9.7-1+b4 [1060 B]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.9-4+rpi1+b4 [501 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.7-1+b4 [25.3 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.7-1+b4 [1076 B]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1 [3437 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up gcc-11-base:armhf (11.2.0-13+rpi1) ...
(Reading database ... 12777 files and directories currently installed.)
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-13+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-6 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.78 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20220119 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-13+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-13+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-13+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbigwig-dev_0.4.4+dfsg-2 libbigwig0_0.4.4+dfsg-2 libbinutils_2.37-5+rpi1 libblas3_3.10.0-2 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-13+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.81.0-1 libcurl4-gnutls-dev_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.6 libdpkg-perl_1.20.9+rpi1 libelf1_0.186-1 libexpat1_2.4.3-1 libexpat1-dev_2.4.3-1 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-13+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-13+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-13+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-sphinxdoc_4.3.2-1 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libpsl5_0.21.0-1.2 libpython3-all-dev_3.9.7-1+b4 libpython3-dev_3.9.7-1+b4 libpython3-stdlib_3.9.7-1+b4 libpython3.9_3.9.9-4+rpi1+b4 libpython3.9-dev_3.9.9-4+rpi1+b4 libpython3.9-minimal_3.9.9-4+rpi1+b4 libpython3.9-stdlib_3.9.9-4+rpi1+b4 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-13+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-13+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.7-1+b4 python3-all_3.9.7-1+b4 python3-all-dev_3.9.7-1+b4 python3-dev_3.9.7-1+b4 python3-distutils_3.9.10-1 python3-lib2to3_3.9.10-1 python3-minimal_3.9.7-1+b4 python3-numpy_1:1.21.5-1 python3-pkg-resources_59.6.0-1.2 python3-setuptools_59.6.0-1.2 python3.9_3.9.9-4+rpi1+b4 python3.9-dev_3.9.9-4+rpi1+b4 python3.9-minimal_3.9.9-4+rpi1+b4 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pybigwig-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.SQyZbdWB/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 5 04:34:09 2019 UTC
gpgv: using RSA key 4D055C31E4812045F9010D75990D38367334D770
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pybigwig_0.3.17-1.dsc
dpkg-source: info: extracting pybigwig in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pybigwig_0.3.17.orig.tar.gz
dpkg-source: info: unpacking pybigwig_0.3.17-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying prepareForExternalLibBigWig.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3.17-1+b3
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-8375c9b3-0454-4833-8c80-46366cf04b54
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pybigwig
dpkg-buildpackage: info: source version 0.3.17-1+b3
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from pybigwig-0.3.17/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:237: python3.9 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
running egg_info
creating pyBigWig.egg-info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build
creating build/temp.linux-armhf-3.9
compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c'
arm-linux-gnueabihf-gcc: pyBigWig.c
pyBigWig.c: In function 'PyString_AsString':
pyBigWig.c:746:12: warning: return discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
746 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
pyBigWig.c: In function 'Numeric2Uint':
pyBigWig.c:771:10: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
771 | if(l > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function 'pyBwAddHeader':
pyBigWig.c:856:20: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
856 | if(zoomTmp > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function 'PyAddIntervals':
pyBigWig.c:1230:19: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
1230 | for(i=0; i<n; i++) free(cchroms[i]);
| ^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lBigWig -lm -lz -lpython3.9 -lcurl -lnpymath -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWig.cpython-39-arm-linux-gnueabihf.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybigwig
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
adding license file 'LICENSE.txt'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWig.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/test.py to test.cpython-39.pyc
running install_egg_info
Copying pyBigWig.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWig-0.3.17.egg-info
Skipping SOURCES.txt
running install_scripts
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 pydist:468: Skipping section [numpy input], unable to parse header
dh_installinit -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybigwig-dbgsym' in '../python3-pybigwig-dbgsym_0.3.17-1+b3_armhf.deb'.
dpkg-deb: building package 'python3-pybigwig' in '../python3-pybigwig_0.3.17-1+b3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../pybigwig_0.3.17-1+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from pybigwig-0.3.17/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
dpkg-buildpackage: info: binary-only upload (no source included)
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Build finished at 2022-01-26T00:38:10Z
Finished
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I: Built successfully
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| Changes |
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pybigwig_0.3.17-1+b3_armhf.changes:
-----------------------------------
Format: 1.8
Date: Wed, 04 Sep 2019 21:26:01 -0700
Source: pybigwig (0.3.17-1)
Binary: python3-pybigwig python3-pybigwig-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.3.17-1+b3
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files
Changes:
pybigwig (0.3.17-1+b3) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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443a9f421eab29d4e55830157a12072e 7035 science optional pybigwig_0.3.17-1+b3_armhf.buildinfo
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python3-pybigwig-dbgsym_0.3.17-1+b3_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 48352 bytes: control archive=552 bytes.
416 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-pybigwig-dbgsym
Source: pybigwig (0.3.17-1)
Version: 0.3.17-1+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 70
Depends: python3-pybigwig (= 0.3.17-1+b3)
Section: debug
Priority: optional
Description: debug symbols for python3-pybigwig
Build-Ids: c3d4096e7814cef62d2c912bbeb1e1ab463e24ef
drwxr-xr-x root/root 0 2019-09-05 04:26 ./
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/debug/.build-id/c3/
-rw-r--r-- root/root 60836 2019-09-05 04:26 ./usr/lib/debug/.build-id/c3/d4096e7814cef62d2c912bbeb1e1ab463e24ef.debug
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig-dbgsym -> python3-pybigwig
python3-pybigwig_0.3.17-1+b3_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 31448 bytes: control archive=1940 bytes.
1807 bytes, 31 lines control
1119 bytes, 12 lines md5sums
269 bytes, 12 lines * postinst #!/bin/sh
418 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pybigwig
Source: pybigwig (0.3.17-1)
Version: 0.3.17-1+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 140
Depends: python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3 (<< 3.10), python3 (>= 3.9~), python3:any, libbigwig0 (>= 0.4.4+dfsg), libc6 (>= 2.29), libpython3.9 (>= 3.9.1)
Section: science
Priority: optional
Homepage: https://github.com/dpryan79/pyBigWig
Description: Python 3 module for quick access to bigBed and bigWig files
This is a Python extension, written in C, for quick access to bigBed files,
and access to and creation of bigWig files.
.
The bigWig format was originally created in the context of genome
browsers. There, computing exact summary statistics for a given interval
is less important than quickly being able to compute an approximate
statistic. Because of this, bigWig files contain not only interval-value
associations, but also `sum of values`/`sum of squared values`/`minimum
value`/`maximum value`/`number of bases covered` for equally sized
bins of various sizes. These different sizes are referred to as "zoom
levels". The smallest zoom level has bins that are 16 times the mean
interval size in the file and each subsequent zoom level has bins 4 times
larger than the previous. This methodology is used in Kent's tools and,
therefore, likely used in almost every currently existing bigWig file.
.
When a bigWig file is queried for a summary statistic, the size of the
interval is used to determine whether to use a zoom level and, if so,
which one. The optimal zoom level is that which has the largest bins no
more than half the width of the desired interval. If no such zoom level
exists, the original intervals are instead used for the calculation.
drwxr-xr-x root/root 0 2019-09-05 04:26 ./
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/
-rw-r--r-- root/root 427 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/dependency_links.txt
-rw-r--r-- root/root 21 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/requires.txt
-rw-r--r-- root/root 22 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/top_level.txt
-rw-r--r-- root/root 67532 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig.cpython-39-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWigTest/
-rw-r--r-- root/root 0 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/__init__.py
-rw-r--r-- root/root 27148 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/test.bigBed
-rw-r--r-- root/root 12966 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/test.bw
-rw-r--r-- root/root 12584 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/test.py
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig/
-rw-r--r-- root/root 224 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig/changelog.Debian.armhf.gz
-rw-r--r-- root/root 682 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig/changelog.Debian.gz
-rw-r--r-- root/root 1461 2019-09-05 04:23 ./usr/share/doc/python3-pybigwig/copyright
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 1072
Build-Time: 91
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 562
Job: pybigwig_0.3.17-1
Machine Architecture: armhf
Package: pybigwig
Package-Time: 704
Source-Version: 0.3.17-1
Space: 1072
Status: successful
Version: 0.3.17-1+b3
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Finished at 2022-01-26T00:38:10Z
Build needed 00:11:44, 1072k disc space