pybigwig →
0.3.17-1+b2 →
armhf → 2020-12-07 12:16:07
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| pybigwig 0.3.17-1+b2 (armhf) Mon, 07 Dec 2020 12:05:12 +0000 |
+==============================================================================+
Package: pybigwig
Version: 0.3.17-1+b2
Source Version: 0.3.17-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-f921495d-35ba-4d05-9b88-d61a9c9f18b6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.9 MB in 15s (1623 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pybigwig' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pybigwig.git
Please use:
git clone https://salsa.debian.org/med-team/pybigwig.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 35.7 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main pybigwig 0.3.17-1 (dsc) [2102 B]
Get:2 http://172.17.0.1/private bullseye-staging/main pybigwig 0.3.17-1 (tar) [29.6 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main pybigwig 0.3.17-1 (diff) [4024 B]
Fetched 35.7 kB in 0s (256 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pybigwig-0Navea/pybigwig-0.3.17' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pybigwig-0Navea' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Q7PSzG/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Q7PSzG/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9461 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 54 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (65.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12762 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
Filtered Build-Depends: debhelper (>= 11), dh-python, libcurl4-gnutls-dev, zlib1g-dev, libbigwig-dev, python3-all, python3-all-dev, python3-numpy, python3-setuptools
dpkg-deb: building package 'sbuild-build-depends-pybigwig-dummy' in '/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive/sbuild-build-depends-pybigwig-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pybigwig-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Sources [547 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ Packages [628 B]
Fetched 2508 B in 0s (11.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pybigwig build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libisl22 libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cpp-10 debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dwz file g++-10 gcc-10 gcc-10-base gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libasan6
libatomic1 libbigwig-dev libbigwig0 libblas3 libbrotli1 libcc1-0 libcroco3
libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgcc-10-dev libgcc-s1
libgfortran5 libglib2.0-0 libgomp1 libicu67 libisl23 liblapack3 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dev
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libstdc++-10-dev libstdc++6 libsub-override-perl libtool libubsan1
libuchardet0 libxml2 m4 mailcap man-db media-types mime-support po-debconf
python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.8 python3.8-dev python3.8-minimal python3.9
python3.9-dev python3.9-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales dh-make
gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev pkg-config libstdc++-10-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv gfortran
python-numpy-doc python3-pytest python3-numpy-dbg python-setuptools-doc
python3.8-venv python3.8-doc binfmt-support python3.9-venv python3.9-doc
Recommended packages:
curl | wget | lynx curl ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs publicsuffix libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbigwig-dev libbigwig0 libblas3
libbrotli1 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libgfortran5 libglib2.0-0 libicu67 libisl23 liblapack3 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dev
libpython3.9-minimal libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1
libsub-override-perl libtool libuchardet0 libxml2 m4 mailcap man-db
media-types mime-support po-debconf python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy
python3-pkg-resources python3-setuptools python3.8 python3.8-dev
python3.8-minimal python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-pybigwig-dummy zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
13 upgraded, 79 newly installed, 0 to remove and 41 not upgraded.
Need to get 174 MB of archives.
After this operation, 59.4 MB disk space will be freed.
Get:1 copy:/<<BUILDDIR>>/resolver-Q7PSzG/apt_archive ./ sbuild-build-depends-pybigwig-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libisl23 armhf 0.23-1 [497 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.0-19+rpi1 [38.4 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.0-19+rpi1 [200 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.0-19+rpi1 [36.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.0-19+rpi1 [83.7 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.0-19+rpi1 [8180 B]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.0-19+rpi1 [300 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.0-19+rpi1 [115 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.0-19+rpi1 [41.4 MB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.0-19+rpi1 [1751 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.0-19+rpi1 [682 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.0-19+rpi1 [44.4 MB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.0-19+rpi1 [38.5 MB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.0-19+rpi1 [409 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.0-5+rpi1 [788 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.0-5+rpi1 [1628 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.0-3 [37.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.0-5+rpi1 [1654 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.0-5+rpi1 [455 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.0-3 [21.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.0-3 [64.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.6-1 [752 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.6-1 [1552 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libbigwig0 armhf 0.4.4+dfsg-2 [23.9 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libbigwig-dev armhf 0.4.4+dfsg-2 [12.5 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libcurl4-gnutls-dev armhf 7.72.0-1 [371 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-19+rpi1 [231 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.0-5+rpi1 [1411 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.0-5+rpi1 [3053 kB]
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Get:79 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.6-1 [1654 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.6-1 [1343 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.6-1 [2887 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.9.0-3 [1076 B]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.6-1 [422 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.9.0-3 [1060 B]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.0-5+rpi1 [501 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.9.0-3 [1168 B]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.6-1 [519 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.9.0-3 [1076 B]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1+b1 [4142 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libisl23:armhf.
(Reading database ... 12762 files and directories currently installed.)
Preparing to unpack .../libisl23_0.23-1_armhf.deb ...
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Setting up python3-pkg-resources (50.3.0-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up libpython3-dev:armhf (3.9.0-3) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up python3-all (3.9.0-3) ...
Setting up libpython3-all-dev:armhf (3.9.0-3) ...
Setting up python3-dev (3.9.0-3) ...
Setting up python3-numpy (1:1.19.4-1+b1) ...
Setting up python3-all-dev (3.9.0-3) ...
Setting up debhelper (13.2.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-pybigwig-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-19+rpi1 gcc-10_10.2.0-19+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-19+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-19+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-19+rpi1 gcc-10-base_10.2.0-19+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.17-10 libacl1_2.2.53-8 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-19+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbigwig-dev_0.4.4+dfsg-2 libbigwig0_0.4.4+dfsg-2 libbinutils_2.35.1-2+rpi1 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbrotli1_1.0.9-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-19+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl3-gnutls_7.72.0-1 libcurl4-gnutls-dev_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-19+rpi1 libgcc-s1_10.2.0-19+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-19+rpi1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-19+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libisl22_0.22.1-1 libisl23_0.23-1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack3_3.9.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.1 libpython3-all-dev_3.9.0-3 libpython3-dev_3.9.0-3 libpython3-stdlib_3.9.0-3 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libpython3.9_3.9.0-5+rpi1 libpython3.9-dev_3.9.0-5+rpi1 libpython3.9-minimal_3.9.0-5+rpi1 libpython3.9-stdlib_3.9.0-5+rpi1 libreadline8_8.1~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-19+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.9.0-3 python3-all_3.9.0-3 python3-all-dev_3.9.0-3 python3-dev_3.9.0-3 python3-distutils_3.8.6-1 python3-lib2to3_3.8.6-1 python3-minimal_3.9.0-3 python3-numpy_1:1.19.4-1+b1 python3-pkg-resources_50.3.0-1 python3-setuptools_50.3.0-1 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 python3.9_3.9.0-5+rpi1 python3.9-dev_3.9.0-5+rpi1 python3.9-minimal_3.9.0-5+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pybigwig-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.p3Y644Ic/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 5 04:34:09 2019 UTC
gpgv: using RSA key 4D055C31E4812045F9010D75990D38367334D770
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pybigwig_0.3.17-1.dsc
dpkg-source: info: extracting pybigwig in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pybigwig_0.3.17.orig.tar.gz
dpkg-source: info: unpacking pybigwig_0.3.17-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying prepareForExternalLibBigWig.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3.17-1+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-f921495d-35ba-4d05-9b88-d61a9c9f18b6
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pybigwig
dpkg-buildpackage: info: source version 0.3.17-1+b2
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from pybigwig-0.3.17/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.8 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
I: pybuild base:232: python3.9 setup.py clean
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.8 setup.py config
running config
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
I: pybuild base:232: python3.9 setup.py config
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3.8 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest
running egg_info
creating pyBigWig.egg-info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build
creating build/temp.linux-armhf-3.8
compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.8 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c'
arm-linux-gnueabihf-gcc: pyBigWig.c
pyBigWig.c: In function 'PyString_AsString':
pyBigWig.c:746:12: warning: return discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
746 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
pyBigWig.c: In function 'Numeric2Uint':
pyBigWig.c:771:10: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
771 | if(l > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function 'pyBwAddHeader':
pyBigWig.c:856:20: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
856 | if(zoomTmp > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function 'PyAddIntervals':
pyBigWig.c:1230:19: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
1230 | for(i=0; i<n; i++) free(cchroms[i]);
| ^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/python3.8/config-3.8-arm-linux-gnueabihf -lBigWig -lm -lz -lpython3.8 -lcurl -lnpymath -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWig.cpython-38-arm-linux-gnueabihf.so
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
I: pybuild base:232: /usr/bin/python3 setup.py build
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
copying pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
copying pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest
running build_ext
building 'pyBigWig' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build/temp.linux-armhf-3.9
compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c'
arm-linux-gnueabihf-gcc: pyBigWig.c
pyBigWig.c: In function 'PyString_AsString':
pyBigWig.c:746:12: warning: return discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
746 | return PyUnicode_AsUTF8(obj);
| ^~~~~~~~~~~~~~~~~~~~~
pyBigWig.c: In function 'Numeric2Uint':
pyBigWig.c:771:10: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
771 | if(l > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function 'pyBwAddHeader':
pyBigWig.c:856:20: warning: comparison of integer expressions of different signedness: 'long int' and 'unsigned int' [-Wsign-compare]
856 | if(zoomTmp > 0xFFFFFFFF) {
| ^
pyBigWig.c: In function 'PyAddIntervals':
pyBigWig.c:1230:19: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
1230 | for(i=0; i<n; i++) free(cchroms[i]);
| ^
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/pyBigWig.o -L/usr/lib/python3/dist-packages/numpy/core/lib -L/usr/lib/python3.9/config-3.9-arm-linux-gnueabihf -lBigWig -lm -lz -lpython3.9 -lcurl -lnpymath -lm -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWig.cpython-39-arm-linux-gnueabihf.so
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build; python3.8 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build; python3.9 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
I: pybuild base:232: /usr/bin/python3.8 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybigwig
running install
running build
running build_py
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pybigwig/build/pyBigWig.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWigTest/test.py to test.cpython-38.pyc
running install_egg_info
Copying pyBigWig.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.8/dist-packages/pyBigWig-0.3.17.egg-info
Skipping SOURCES.txt
running install_scripts
/usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pybigwig
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier'
warnings.warn(msg)
running install
running build
running build_py
running egg_info
writing pyBigWig.egg-info/PKG-INFO
writing dependency_links to pyBigWig.egg-info/dependency_links.txt
writing requirements to pyBigWig.egg-info/requires.txt
writing top-level names to pyBigWig.egg-info/top_level.txt
reading manifest file 'pyBigWig.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'libBigWig/*'
writing manifest file 'pyBigWig.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/test.py -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/test.bigBed -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/test.bw -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest
creating /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWigTest/__pycache__/test.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pybigwig/build/pyBigWig.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWigTest/test.py to test.cpython-39.pyc
running install_egg_info
Copying pyBigWig.egg-info to /<<PKGBUILDDIR>>/debian/python3-pybigwig/usr/lib/python3.9/dist-packages/pyBigWig-0.3.17.egg-info
Skipping SOURCES.txt
running install_scripts
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-pybigwig: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pybigwig-dbgsym' in '../python3-pybigwig-dbgsym_0.3.17-1+b2_armhf.deb'.
dpkg-deb: building package 'python3-pybigwig' in '../python3-pybigwig_0.3.17-1+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../pybigwig_0.3.17-1+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from pybigwig-0.3.17/debian/source/options: --extend-diff-ignore=^(.*\.egg-info/)
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-07T12:16:04Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pybigwig_0.3.17-1+b2_armhf.changes:
-----------------------------------
Format: 1.8
Date: Wed, 04 Sep 2019 21:26:01 -0700
Source: pybigwig (0.3.17-1)
Binary: python3-pybigwig python3-pybigwig-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.3.17-1+b2
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files
Changes:
pybigwig (0.3.17-1+b2) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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1a1ebc6d615c427c97221f4f44a582db8d52d841 85356 python3-pybigwig-dbgsym_0.3.17-1+b2_armhf.deb
42bbbedef92b906660a13c2b462047b1aa985d71 32824 python3-pybigwig_0.3.17-1+b2_armhf.deb
Checksums-Sha256:
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d5ed09baef3ce928edb00ccb80bf85d969b0aaed8df04d35de274b7b248f08cf 85356 python3-pybigwig-dbgsym_0.3.17-1+b2_armhf.deb
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Files:
2975cd01679e8e4bcfe2242b1728aec9 7144 science optional pybigwig_0.3.17-1+b2_armhf.buildinfo
39a9d7aeefee622fef344757b409367a 85356 debug optional python3-pybigwig-dbgsym_0.3.17-1+b2_armhf.deb
37cd22231c2f58fc9807b1cc0a89b5ef 32824 science optional python3-pybigwig_0.3.17-1+b2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pybigwig-dbgsym_0.3.17-1+b2_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 85356 bytes: control archive=616 bytes.
458 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: python3-pybigwig-dbgsym
Source: pybigwig (0.3.17-1)
Version: 0.3.17-1+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 127
Depends: python3-pybigwig (= 0.3.17-1+b2)
Section: debug
Priority: optional
Description: debug symbols for python3-pybigwig
Build-Ids: 0b1324709cff79f19fecffeb11b45f8496e05c34 46052ac4ced7185739e275cec771e73c6d5a8f1a
drwxr-xr-x root/root 0 2019-09-05 04:26 ./
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/debug/.build-id/0b/
-rw-r--r-- root/root 61520 2019-09-05 04:26 ./usr/lib/debug/.build-id/0b/1324709cff79f19fecffeb11b45f8496e05c34.debug
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/debug/.build-id/46/
-rw-r--r-- root/root 56152 2019-09-05 04:26 ./usr/lib/debug/.build-id/46/052ac4ced7185739e275cec771e73c6d5a8f1a.debug
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig-dbgsym -> python3-pybigwig
python3-pybigwig_0.3.17-1+b2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 32824 bytes: control archive=1980 bytes.
1839 bytes, 31 lines control
1226 bytes, 13 lines md5sums
257 bytes, 12 lines * postinst #!/bin/sh
406 bytes, 12 lines * prerm #!/bin/sh
Package: python3-pybigwig
Source: pybigwig (0.3.17-1)
Version: 0.3.17-1+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 206
Depends: python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, python3 (<< 3.10), python3 (>= 3.8~), python3:any, libbigwig0 (>= 0.4.4+dfsg), libc6 (>= 2.29), libpython3.8 (>= 3.8.2), libpython3.9 (>= 3.9.0~b4)
Section: science
Priority: optional
Homepage: https://github.com/dpryan79/pyBigWig
Description: Python 3 module for quick access to bigBed and bigWig files
This is a Python extension, written in C, for quick access to bigBed files,
and access to and creation of bigWig files.
.
The bigWig format was originally created in the context of genome
browsers. There, computing exact summary statistics for a given interval
is less important than quickly being able to compute an approximate
statistic. Because of this, bigWig files contain not only interval-value
associations, but also `sum of values`/`sum of squared values`/`minimum
value`/`maximum value`/`number of bases covered` for equally sized
bins of various sizes. These different sizes are referred to as "zoom
levels". The smallest zoom level has bins that are 16 times the mean
interval size in the file and each subsequent zoom level has bins 4 times
larger than the previous. This methodology is used in Kent's tools and,
therefore, likely used in almost every currently existing bigWig file.
.
When a bigWig file is queried for a summary statistic, the size of the
interval is used to determine whether to use a zoom level and, if so,
which one. The optimal zoom level is that which has the largest bins no
more than half the width of the desired interval. If no such zoom level
exists, the original intervals are instead used for the calculation.
drwxr-xr-x root/root 0 2019-09-05 04:26 ./
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/
-rw-r--r-- root/root 412 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/dependency_links.txt
-rw-r--r-- root/root 21 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/requires.txt
-rw-r--r-- root/root 22 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig-0.3.17.egg-info/top_level.txt
-rw-r--r-- root/root 67536 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig.cpython-38-arm-linux-gnueabihf.so
-rw-r--r-- root/root 67532 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWig.cpython-39-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/lib/python3/dist-packages/pyBigWigTest/
-rw-r--r-- root/root 0 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/__init__.py
-rw-r--r-- root/root 27148 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/test.bigBed
-rw-r--r-- root/root 12966 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/test.bw
-rw-r--r-- root/root 12584 2019-08-05 09:15 ./usr/lib/python3/dist-packages/pyBigWigTest/test.py
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig/
-rw-r--r-- root/root 222 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig/changelog.Debian.armhf.gz
-rw-r--r-- root/root 682 2019-09-05 04:26 ./usr/share/doc/python3-pybigwig/changelog.Debian.gz
-rw-r--r-- root/root 1461 2019-09-05 04:23 ./usr/share/doc/python3-pybigwig/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1644
Build-Time: 32
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 595
Job: pybigwig_0.3.17-1
Machine Architecture: armhf
Package: pybigwig
Package-Time: 652
Source-Version: 0.3.17-1
Space: 1644
Status: successful
Version: 0.3.17-1+b2
--------------------------------------------------------------------------------
Finished at 2020-12-07T12:16:04Z
Build needed 00:10:52, 1644k disk space