proteinortho →
5.16+dfsg-1 →
armhf → 2018-02-26 14:18:42
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| proteinortho 5.16+dfsg-1 (armhf) Mon, 26 Feb 2018 14:05:22 +0000 |
+==============================================================================+
Package: proteinortho
Version: 5.16+dfsg-1
Source Version: 5.16+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-0d263449-d613-4270-b629-163934ea9800' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.4 MB]
Fetched 23.0 MB in 26s (901 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/proteinortho.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/proteinortho.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 109 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main proteinortho 5.16+dfsg-1 (dsc) [2078 B]
Get:2 http://172.17.0.1/private buster-staging/main proteinortho 5.16+dfsg-1 (tar) [103 kB]
Get:3 http://172.17.0.1/private buster-staging/main proteinortho 5.16+dfsg-1 (diff) [4032 B]
Fetched 109 kB in 0s (1235 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/proteinortho-BzDNxq/proteinortho-5.16+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/proteinortho-BzDNxq' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-2Esiye/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-2Esiye/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-2Esiye/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2877 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-2Esiye/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 84 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (20.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15333 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), ncbi-blast+
Filtered Build-Depends: debhelper (>= 11~), ncbi-blast+
dpkg-deb: building package 'sbuild-build-depends-proteinortho-dummy' in '/<<BUILDDIR>>/resolver-2Esiye/apt_archive/sbuild-build-depends-proteinortho-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-proteinortho-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Sources [503 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Packages [581 B]
Fetched 2417 B in 1s (3075 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-2Esiye/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install proteinortho build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libfile-stripnondeterminism-perl libgdbm5 libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libmbedcrypto1 libmbedtls10 libmbedx509-0 libpipeline1
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support ncbi-blast+
ncbi-data po-debconf python python-minimal python2.7 python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
gdbm-l10n libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor
less www-browser libmail-box-perl python-doc python-tk python2.7-doc
binfmt-support
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libfile-stripnondeterminism-perl libgdbm5 libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libmbedcrypto1 libmbedtls10 libmbedx509-0 libpipeline1
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support ncbi-blast+
ncbi-data po-debconf python python-minimal python2.7 python2.7-minimal
sbuild-build-depends-proteinortho-dummy
0 upgraded, 45 newly installed, 0 to remove and 84 not upgraded.
Need to get 34.7 MB/34.9 MB of archives.
After this operation, 142 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2Esiye/apt_archive ./ sbuild-build-depends-proteinortho-dummy 0.invalid.0 [864 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.7-1 [96.8 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libgdbm5 armhf 1.14.1-4 [54.0 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.1-1+b1 [1143 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-6 [393 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-6 [1080 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-4 [41.0 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-6 [1841 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.14-6 [293 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-4 [20.4 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-4 [155 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-2 [225 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-2 [105 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-2 [63.8 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.3-2 [2651 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-6.1 [602 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.4 [1005 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libmbedcrypto1 armhf 2.7.0-2 [165 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libmbedx509-0 armhf 2.7.0-2 [74.6 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmbedtls10 armhf 2.7.0-2 [104 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf ncbi-data all 6.1.20170106-2 [3692 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf ncbi-blast+ armhf 2.7.1-1+b1 [8043 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 34.7 MB in 3s (10.8 MB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15333 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.8.7-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.7-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ...
Unpacking groff-base (1.22.3-10) ...
Selecting previously unselected package libgdbm5:armhf.
Preparing to unpack .../03-libgdbm5_1.14.1-4_armhf.deb ...
Unpacking libgdbm5:armhf (1.14.1-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../04-libpipeline1_1.5.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.0-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.8.1-1+b1_armhf.deb ...
Unpacking man-db (2.8.1-1+b1) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../06-libpython2.7-minimal_2.7.14-6_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.14-6) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../07-python2.7-minimal_2.7.14-6_armhf.deb ...
Unpacking python2.7-minimal (2.7.14-6) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../08-python-minimal_2.7.14-4_armhf.deb ...
Unpacking python-minimal (2.7.14-4) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../09-mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../10-libexpat1_2.2.5-3_armhf.deb ...
Unpacking libexpat1:armhf (2.2.5-3) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../11-libpython2.7-stdlib_2.7.14-6_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.14-6) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../12-python2.7_2.7.14-6_armhf.deb ...
Unpacking python2.7 (2.7.14-6) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../13-libpython-stdlib_2.7.14-4_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.14-4) ...
Setting up libpython2.7-minimal:armhf (2.7.14-6) ...
Setting up python2.7-minimal (2.7.14-6) ...
Setting up python-minimal (2.7.14-4) ...
Selecting previously unselected package python.
(Reading database ... 16734 files and directories currently installed.)
Preparing to unpack .../00-python_2.7.14-4_armhf.deb ...
Unpacking python (2.7.14-4) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.32-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.32-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../02-libmagic1_1%3a5.32-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.32-2) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.32-2_armhf.deb ...
Unpacking file (1:5.32-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.19.8.1-4_armhf.deb ...
Unpacking gettext-base (0.19.8.1-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../05-libsigsegv2_2.12-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../06-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../07-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../08-autotools-dev_20171216.1_all.deb ...
Unpacking autotools-dev (20171216.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../09-automake_1%3a1.15.1-3_all.deb ...
Unpacking automake (1:1.15.1-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../10-autopoint_0.19.8.1-4_all.deb ...
Unpacking autopoint (0.19.8.1-4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../11-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../12-dh-autoreconf_16_all.deb ...
Unpacking dh-autoreconf (16) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../13-libarchive-zip-perl_1.60-1_all.deb ...
Unpacking libarchive-zip-perl (1.60-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../14-libfile-stripnondeterminism-perl_0.040-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.040-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../15-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../16-dh-strip-nondeterminism_0.040-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.040-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../17-libglib2.0-0_2.54.3-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.54.3-2) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../18-libicu57_57.1-8_armhf.deb ...
Unpacking libicu57:armhf (57.1-8) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../19-libxml2_2.9.4+dfsg1-6.1_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-6.1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../20-libcroco3_0.6.12-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../21-gettext_0.19.8.1-4_armhf.deb ...
Unpacking gettext (0.19.8.1-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../22-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../23-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../24-debhelper_11.1.4_all.deb ...
Unpacking debhelper (11.1.4) ...
Selecting previously unselected package libmbedcrypto1:armhf.
Preparing to unpack .../25-libmbedcrypto1_2.7.0-2_armhf.deb ...
Unpacking libmbedcrypto1:armhf (2.7.0-2) ...
Selecting previously unselected package libmbedx509-0:armhf.
Preparing to unpack .../26-libmbedx509-0_2.7.0-2_armhf.deb ...
Unpacking libmbedx509-0:armhf (2.7.0-2) ...
Selecting previously unselected package libmbedtls10:armhf.
Preparing to unpack .../27-libmbedtls10_2.7.0-2_armhf.deb ...
Unpacking libmbedtls10:armhf (2.7.0-2) ...
Selecting previously unselected package ncbi-data.
Preparing to unpack .../28-ncbi-data_6.1.20170106-2_all.deb ...
Unpacking ncbi-data (6.1.20170106-2) ...
Selecting previously unselected package ncbi-blast+.
Preparing to unpack .../29-ncbi-blast+_2.7.1-1+b1_armhf.deb ...
Unpacking ncbi-blast+ (2.7.1-1+b1) ...
Selecting previously unselected package sbuild-build-depends-proteinortho-dummy.
Preparing to unpack .../30-sbuild-build-depends-proteinortho-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-proteinortho-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.5-3) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.12-1) ...
Setting up libmbedcrypto1:armhf (2.7.0-2) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.54.3-2) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libgdbm5:armhf (1.14.1-4) ...
Setting up libicu57:armhf (57.1-8) ...
Setting up libbsd0:armhf (0.8.7-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
Setting up libmagic-mgc (1:5.32-2) ...
Setting up libmagic1:armhf (1:5.32-2) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up ncbi-data (6.1.20170106-2) ...
Processing triggers for libc-bin (2.26-4+rpi1) ...
Setting up autotools-dev (20171216.1) ...
Setting up libmbedx509-0:armhf (2.7.0-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpython2.7-stdlib:armhf (2.7.14-6) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up libfile-stripnondeterminism-perl (0.040-1) ...
Setting up libmbedtls10:armhf (2.7.0-2) ...
Setting up gettext (0.19.8.1-4) ...
Setting up python2.7 (2.7.14-6) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-2) ...
Setting up libpython-stdlib:armhf (2.7.14-4) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.1-1+b1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python (2.7.14-4) ...
Setting up libtool (2.4.6-2) ...
Setting up po-debconf (1.0.20) ...
Setting up ncbi-blast+ (2.7.1-1+b1) ...
Setting up dh-autoreconf (16) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up debhelper (11.1.4) ...
Setting up sbuild-build-depends-proteinortho-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.26-4+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-13+rpi1 dpkg-dev_1.19.0.5 g++-7_7.2.0-19+b1 gcc-7_7.2.0-19+b1 libc6-dev_2.26-4+rpi1 libstdc++-7-dev_7.2.0-19+b1 libstdc++6_7.2.0-19+b1 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha6 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20171216.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-13+rpi1 binutils-arm-linux-gnueabihf_2.29.1-13+rpi1 binutils-common_2.29.1-13+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.30.2-0.3 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-19+b1 dash_0.5.8-2.10 debconf_1.5.65 debhelper_11.1.4 debianutils_4.8.4 dh-autoreconf_16 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.4-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.43.8-2 e2fsprogs_1.43.8-2 e2fsprogs-l10n_1.43.8-2 fakeroot_1.22-2 fdisk_2.30.2-0.3 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1d1 g++-7_7.2.0-19+b1 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-19+b1 gcc-7-base_7.2.0-19+b1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.4-1 gnupg-agent_2.2.4-1 gnupg-l10n_2.2.4-1 gnupg-utils_2.2.4-1 gpg_2.2.4-1 gpg-agent_2.2.4-1 gpg-wks-client_2.2.4-1 gpg-wks-server_2.2.4-1 gpgconf_2.2.4-1 gpgsm_2.2.4-1 gpgv_2.2.4-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-2 libapt-pkg5.0_1.6~alpha6 libarchive-zip-perl_1.60-1 libasan4_7.2.0-19+b1 libassuan0_2.5.1-1 libatomic1_7.2.0-19+b1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.29.1-13+rpi1 libblkid1_2.30.2-0.3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-4+rpi1 libc-dev-bin_2.26-4+rpi1 libc6_2.26-4+rpi1 libc6-dev_2.26-4+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-19+b1 libcilkrts5_7.2.0-19+b1 libcomerr2_1.43.8-2 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.239 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.89-1+rpi1 libdrm2_2.4.89-1+rpi1 libexpat1_2.2.5-3 libfakeroot_1.22-2 libfdisk1_2.30.2-0.3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-19+b1 libgcc1_1:7.2.0-19+b1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgdbm5_1.14.1-4 libglib2.0-0_2.54.3-2 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.17-1 libgomp1_7.2.0-19+b1 libgpg-error0_1.27-5 libhogweed4_3.4-1 libicu57_57.1-8 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmbedcrypto1_2.7.0-2 libmbedtls10_2.7.0-2 libmbedx509-0_2.7.0-2 libmount1_2.30.2-0.3 libmpc3_1.1.0-1 libmpfr6_4.0.0-7 libncurses5_6.0+20171125-1 libncursesw5_6.0+20171125-1 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-8 libperl5.24_5.24.1-7 libperl5.26_5.26.1-4 libpipeline1_1.5.0-1 libplymouth4_0.9.3-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3 libpython-stdlib_2.7.14-4 libpython2.7-minimal_2.7.14-6 libpython2.7-stdlib_2.7.14-6 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-1 libsmartcols1_2.30.2-0.3 libsqlite3-0_3.22.0-1 libss2_1.43.8-2 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.2.0-19+b1 libstdc++6_7.2.0-19+b1 libsystemd0_236-2 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20171125-1 libtool_2.4.6-2 libubsan0_7.2.0-19+b1 libudev1_236-2 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.3 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.1-1+b1 mawk_1.3.3-17 mime-support_3.60 mount_2.30.2-0.3 multiarch-support_2.26-4+rpi1 nano_2.9.2-1 ncbi-blast+_2.7.1-1+b1 ncbi-data_6.1.20170106-2 ncurses-base_6.0+20171125-1 ncurses-bin_6.0+20171125-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-4 perl-base_5.26.1-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-4 pinentry-curses_1.0.0-3 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.14-4 python-minimal_2.7.14-4 python2.7_2.7.14-6 python2.7-minimal_2.7.14-6 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proteinortho-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.11 systemd_236-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 udev_236-2 util-linux_2.30.2-0.3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Feb 21 07:43:53 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./proteinortho_5.16+dfsg-1.dsc
dpkg-source: info: extracting proteinortho in /<<BUILDDIR>>/proteinortho-5.16+dfsg
dpkg-source: info: unpacking proteinortho_5.16+dfsg.orig.tar.xz
dpkg-source: info: unpacking proteinortho_5.16+dfsg-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-0d263449-d613-4270-b629-163934ea9800
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package proteinortho
dpkg-buildpackage: info: source version 5.16+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build proteinortho-5.16+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O2 -std=gnu++11 -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o proteinortho5_clustering proteinortho5_clustering.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O2 -std=gnu++11 -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o proteinortho5_tree po_tree.c
make[1]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
dh_auto_test -a
make -j4 test
make[1]: Entering directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
./proteinortho5.pl -project=test -synteny -singles test/*.faa
*****************************************************************
Proteinortho with PoFF version 5.16 - An orthology detection tool
*****************************************************************
Detected 4 available CPU threads, Detected NCBI BLAST version 2.7.1+
Checking input files
Checking test/C.faa... test/C.faa 109 genes ok
Checking test/E.faa... test/E.faa 72 genes ok
Checking test/L.faa... test/L.faa 40 genes ok
Checking test/M.faa... test/M.faa 40 genes ok
**Step 1**
Generating indices
Building database for 'test/C.faa' (109 sequences)
Building database for 'test/E.faa' (72 sequences)
Building database for 'test/L.faa' (40 sequences)
Building database for 'test/M.faa' (40 sequences)
**Step 2**
Running blast analysis: 0% (0/6)
Running blast analysis: 16.66% (1/6)
Running blast analysis: 33.33% (2/6)
Running blast analysis: 100% (6/6)
Running blast analysis: 83.33% (5/6)
Running blast analysis: 50% (3/6)
Running blast analysis: 66.66% (4/6)
Running blast analysis: 100% (6/6)
[OUTPUT] -> written to test.blast-graph
**Step 3**
Clustering by similarity (Proteinortho mode)
Reading test.blast-graph
4 species
112 paired proteins
144 bidirectional edges
Clustering: 1.79%
Clustering: 3.57%
Clustering: 5.36%
Clustering: 7.14%
Clustering: 8.93%
Clustering: 10.71%
Clustering: 12.50%
Clustering: 14.29%
Clustering: 18.75%
Clustering: 20.54%
Clustering: 23.21%
Clustering: 24.11%
Clustering: 25.89%
Clustering: 28.57%
Clustering: 29.46%
Clustering: 41.07%
Clustering: 43.75%
Clustering: 58.93%
Clustering: 62.50%
Clustering: 64.29%
Clustering: 66.07%
Clustering: 67.86%
Clustering: 69.64%
Clustering: 71.43%
Clustering: 73.21%
Clustering: 75.00%
Clustering: 76.79%
Clustering: 78.57%
Clustering: 82.14%
Clustering: 85.71%
Clustering: 89.29%
Clustering: 93.75%
Clustering: 95.54%
Clustering: 100.00%
Done
Adding singles...
[OUTPUT] -> written to test.proteinortho
Writing graph...
Cleaning edge list...
Removed 25 / 144 edges
Done.
[OUTPUT] -> written to test.proteinortho-graph
Clustering by gene-order (POFF mode)
Reading test.ffadj-graph
4 species
105 paired proteins
104 bidirectional edges
Clustering: 1.90%
Clustering: 3.81%
Clustering: 5.71%
Clustering: 7.62%
Clustering: 9.52%
Clustering: 11.43%
Clustering: 13.33%
Clustering: 15.24%
Clustering: 17.14%
Clustering: 19.05%
Clustering: 20.95%
Clustering: 35.24%
Clustering: 37.14%
Clustering: 48.57%
Clustering: 50.48%
Clustering: 54.29%
Clustering: 56.19%
Clustering: 58.10%
Clustering: 60.00%
Clustering: 61.90%
Clustering: 64.76%
Clustering: 66.67%
Clustering: 68.57%
Clustering: 70.48%
Clustering: 72.38%
Clustering: 74.29%
Clustering: 76.19%
Clustering: 78.10%
Clustering: 80.95%
Clustering: 82.86%
Clustering: 84.76%
Clustering: 86.67%
Clustering: 88.57%
Clustering: 90.48%
Clustering: 92.38%
Clustering: 100.00%
Done
Adding singles...
[OUTPUT] -> written to test.poff
Writing graph...
Cleaning edge list...
Removed 0 / 104 edges
Done.
[OUTPUT] -> written to test.poff-graph
All finished.
Test okay
make[1]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
dh_auto_install --buildsystem=makefile -- install INSTALLDIR=/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho
make -j4 install DESTDIR=/<<BUILDDIR>>/proteinortho-5.16\+dfsg/debian/proteinortho AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" install INSTALLDIR=/<<BUILDDIR>>/proteinortho-5.16\+dfsg/debian/proteinortho/usr/lib/proteinortho
make[2]: Entering directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
install -v proteinortho5.pl proteinortho5_clustering proteinortho5_singletons.pl proteinortho5_clean_edges2.pl ffadj_mcs.py po2tree.pl proteinortho5_tree /<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho
'proteinortho5.pl' -> '/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5.pl'
'proteinortho5_clustering' -> '/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clustering'
'proteinortho5_singletons.pl' -> '/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_singletons.pl'
'proteinortho5_clean_edges2.pl' -> '/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clean_edges2.pl'
'ffadj_mcs.py' -> '/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho/ffadj_mcs.py'
'po2tree.pl' -> '/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho/po2tree.pl'
'proteinortho5_tree' -> '/<<BUILDDIR>>/proteinortho-5.16+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_tree'
make[2]: 'install' is up to date.
make[2]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.16+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/proteinortho/usr/lib/proteinortho/proteinortho5_clustering contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package proteinortho: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package proteinortho: unused substitution variable ${perl:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'proteinortho' in '../proteinortho_5.16+dfsg-1_armhf.deb'.
dpkg-deb: building package 'proteinortho-dbgsym' in '../proteinortho-dbgsym_5.16+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../proteinortho_5.16+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build proteinortho-5.16+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-02-26T14:14:54Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
proteinortho_5.16+dfsg-1_armhf.changes:
---------------------------------------
Format: 1.8
Date: Wed, 21 Feb 2018 08:35:47 +0100
Source: proteinortho
Binary: proteinortho
Architecture: armhf
Version: 5.16+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
proteinortho - Detection of (Co-)orthologs in large-scale protein analysis
Changes:
proteinortho (5.16+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11
* d/rules: do not parse d/changelog
Checksums-Sha1:
d9e60e30615ddd7db6628f1e6d1da35afe212bf4 6756 proteinortho-dbgsym_5.16+dfsg-1_armhf.deb
3c43805b5a768c03f54ff6c5f69fc4804c17e165 5185 proteinortho_5.16+dfsg-1_armhf.buildinfo
2166ea283a2b2a4cad24dc59fd65da15518199e4 136824 proteinortho_5.16+dfsg-1_armhf.deb
Checksums-Sha256:
863f69e43a8f92f4efee208d7a7ab7f64aeedb3a26b4b5e4a1a92ab1573964e2 6756 proteinortho-dbgsym_5.16+dfsg-1_armhf.deb
75aaf23c6caf97dba2eaa64e18744d9b43c20b1408fc4c47ab9039117dc3fa35 5185 proteinortho_5.16+dfsg-1_armhf.buildinfo
12b3a824f9196b7f03f56ffe12da7d77b635126c4b7c832ceff4d572f236d9c4 136824 proteinortho_5.16+dfsg-1_armhf.deb
Files:
b94e3c471f7834a7993bf0a117ce018e 6756 debug optional proteinortho-dbgsym_5.16+dfsg-1_armhf.deb
f689097a2b3b21be3defe3016ad2cb4e 5185 science optional proteinortho_5.16+dfsg-1_armhf.buildinfo
7cb95371779e7251395b157b5f3a7b38 136824 science optional proteinortho_5.16+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
proteinortho-dbgsym_5.16+dfsg-1_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 6756 bytes: control archive=600 bytes.
438 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: proteinortho-dbgsym
Source: proteinortho
Version: 5.16+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 35
Depends: proteinortho (= 5.16+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for proteinortho
Build-Ids: 3ce7af9b02ed9d7a4d4484be9835e6ed2da30ac1 a54fc7f653739212adec85a63dc436c74819530b
drwxr-xr-x root/root 0 2018-02-21 07:35 ./
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/lib/debug/.build-id/3c/
-rw-r--r-- root/root 18424 2018-02-21 07:35 ./usr/lib/debug/.build-id/3c/e7af9b02ed9d7a4d4484be9835e6ed2da30ac1.debug
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root 5300 2018-02-21 07:35 ./usr/lib/debug/.build-id/a5/4fc7f653739212adec85a63dc436c74819530b.debug
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-02-21 07:35 ./usr/share/doc/proteinortho-dbgsym -> proteinortho
proteinortho_5.16+dfsg-1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 136824 bytes: control archive=1656 bytes.
912 bytes, 17 lines control
2187 bytes, 28 lines md5sums
Package: proteinortho
Version: 5.16+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 267
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), ncbi-blast+, python
Section: science
Priority: optional
Homepage: https://www.bioinf.uni-leipzig.de/Software/proteinortho/
Description: Detection of (Co-)orthologs in large-scale protein analysis
Proteinortho is a stand-alone tool that is geared towards large datasets
and makes use of distributed computing techniques when run on multi-core
hardware. It implements an extended version of the reciprocal best
alignment heuristic. Proteinortho was applied to compute orthologous
proteins in the complete set of all 717 eubacterial genomes available at
NCBI at the beginning of 2009. Authors succeeded identifying thirty
proteins present in 99% of all bacterial proteomes.
drwxr-xr-x root/root 0 2018-02-21 07:35 ./
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/bin/
-rwxr-xr-x root/root 52 2018-02-21 07:35 ./usr/bin/proteinortho5
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/lib/proteinortho/
-rwxr-xr-x root/root 35339 2018-02-21 07:35 ./usr/lib/proteinortho/ffadj_mcs.py
-rwxr-xr-x root/root 4888 2018-02-21 07:35 ./usr/lib/proteinortho/po2tree.pl
-rwxr-xr-x root/root 40732 2018-02-21 07:35 ./usr/lib/proteinortho/proteinortho5.pl
-rwxr-xr-x root/root 1882 2018-02-21 07:35 ./usr/lib/proteinortho/proteinortho5_clean_edges2.pl
-rwxr-xr-x root/root 50720 2018-02-21 07:35 ./usr/lib/proteinortho/proteinortho5_clustering
-rwxr-xr-x root/root 1616 2018-02-21 07:35 ./usr/lib/proteinortho/proteinortho5_singletons.pl
-rwxr-xr-x root/root 9632 2018-02-21 07:35 ./usr/lib/proteinortho/proteinortho5_tree
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/doc/proteinortho/
-rw-r--r-- root/root 263 2018-02-21 07:35 ./usr/share/doc/proteinortho/README.test
-rw-r--r-- root/root 456 2018-02-21 07:35 ./usr/share/doc/proteinortho/changelog.Debian.gz
-rw-r--r-- root/root 1178 2018-02-21 07:35 ./usr/share/doc/proteinortho/copyright
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/doc/proteinortho/examples/
-rw-r--r-- root/root 24290 2017-03-20 21:07 ./usr/share/doc/proteinortho/examples/C.faa.gz
-rw-r--r-- root/root 1867 2017-03-20 20:34 ./usr/share/doc/proteinortho/examples/C.gff.gz
-rw-r--r-- root/root 29389 2017-03-20 21:07 ./usr/share/doc/proteinortho/examples/E.faa.gz
-rw-r--r-- root/root 1880 2017-03-20 20:34 ./usr/share/doc/proteinortho/examples/E.gff.gz
-rw-r--r-- root/root 14172 2017-03-21 13:28 ./usr/share/doc/proteinortho/examples/L.faa.gz
-rw-r--r-- root/root 2376 2017-03-20 20:34 ./usr/share/doc/proteinortho/examples/L.gff
-rw-r--r-- root/root 14230 2017-03-20 20:34 ./usr/share/doc/proteinortho/examples/M.faa.gz
-rw-r--r-- root/root 2317 2017-03-20 20:34 ./usr/share/doc/proteinortho/examples/M.gff
-rwxr-xr-x root/root 238 2017-03-20 20:34 ./usr/share/doc/proteinortho/examples/chk_test.pl
-rw-r--r-- root/root 393 2018-02-21 07:35 ./usr/share/doc/proteinortho/run-unit-test
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/doc/proteinortho/tools/
-rw-r--r-- root/root 910 2017-03-21 20:31 ./usr/share/doc/proteinortho/tools/check_graph_duplicate_ids.pl
-rw-r--r-- root/root 1209 2017-03-20 20:34 ./usr/share/doc/proteinortho/tools/comp_bla.pl
-rw-r--r-- root/root 1153 2017-03-23 09:10 ./usr/share/doc/proteinortho/tools/extract_from_graph.pl
-rw-r--r-- root/root 2638 2017-03-20 20:34 ./usr/share/doc/proteinortho/tools/grab_proteins.pl
-rw-r--r-- root/root 197 2017-03-20 20:34 ./usr/share/doc/proteinortho/tools/graph_conv.pl
-rw-r--r-- root/root 627 2017-03-21 20:29 ./usr/share/doc/proteinortho/tools/remove_graph_duplicates.pl
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/man/
drwxr-xr-x root/root 0 2018-02-21 07:35 ./usr/share/man/man1/
-rw-r--r-- root/root 1381 2018-02-21 07:35 ./usr/share/man/man1/proteinortho5.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1364
Build-Time: 107
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 414
Job: proteinortho_5.16+dfsg-1
Machine Architecture: armhf
Package: proteinortho
Package-Time: 572
Source-Version: 5.16+dfsg-1
Space: 1364
Status: successful
Version: 5.16+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-02-26T14:14:54Z
Build needed 00:09:32, 1364k disc space