proteinortho →
5.15+dfsg-1 →
armhf → 2016-09-04 11:53:50
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testwandboard
+==============================================================================+
| proteinortho 5.15+dfsg-1 (armhf) 04 Sep 2016 11:44 |
+==============================================================================+
Package: proteinortho
Version: 5.15+dfsg-1
Source Version: 5.15+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/proteinortho-GyuCOk/proteinortho-5.15+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/proteinortho-GyuCOk' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-3f8bb634-94b1-49a5-a240-6ee2014e5912' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9264 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.2 MB]
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| Fetch source files |
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Check APT
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Download source files with APT
------------------------------
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NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/proteinortho.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/proteinortho.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 187 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main proteinortho 5.15+dfsg-1 (dsc) [2041 B]
Get:2 http://172.17.0.1/private stretch-staging/main proteinortho 5.15+dfsg-1 (tar) [181 kB]
Get:3 http://172.17.0.1/private stretch-staging/main proteinortho 5.15+dfsg-1 (diff) [4000 B]
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Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-q2PfYT/apt_archive/sbuild-build-depends-core-dummy.deb'.
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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
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Installing build dependencies
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sbuild-build-depends-core-dummy
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Filtered Build-Depends: debhelper (>= 9), ncbi-blast+
dpkg-deb: building package 'sbuild-build-depends-proteinortho-dummy' in '/<<BUILDDIR>>/resolver-3tcHKt/apt_archive/sbuild-build-depends-proteinortho-dummy.deb'.
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+------------------------------------------------------------------------------+
| Install proteinortho build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal
libpython2.7-stdlib libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl
libtool libunistring0 libxml2 m4 man-db mime-support ncbi-blast+ ncbi-data
po-debconf python python-minimal python2.7 python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl python-doc python-tk python2.7-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal
libpython2.7-stdlib libsigsegv2 libsqlite3-0 libssl1.0.2 libtimedate-perl
libtool libunistring0 libxml2 m4 man-db mime-support ncbi-blast+ ncbi-data
po-debconf python python-minimal python2.7 python2.7-minimal
sbuild-build-depends-proteinortho-dummy
0 upgraded, 45 newly installed, 0 to remove and 25 not upgraded.
Need to get 35.3 MB/35.3 MB of archives.
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Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
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Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.12-2 [388 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.12-2 [1173 kB]
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Get:18 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.28-4 [210 kB]
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Get:20 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-4 [62.7 kB]
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Get:34 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
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Get:41 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160814 [800 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf ncbi-data all 6.1.20120620-12 [3293 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf ncbi-blast+ armhf 2.4.0-3 [7590 kB]
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Setting up groff-base (1.22.3-8) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-3) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-1+b1) ...
Setting up libmagic-mgc (1:5.28-4) ...
Setting up libmagic1:armhf (1:5.28-4) ...
Setting up libssl1.0.2:armhf (1.0.2h-1) ...
Setting up ncbi-data (6.1.20120620-12) ...
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libsqlite3-0:armhf (3.14.1-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpython2.7-stdlib:armhf (2.7.12-2) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up libfile-stripnondeterminism-perl (0.023-2) ...
Setting up libglib2.0-0:armhf (2.48.1-3) ...
No schema files found: doing nothing.
Setting up python2.7 (2.7.12-2) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.28-4) ...
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libpython-stdlib:armhf (2.7.11-2) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python (2.7.11-2) ...
Setting up libtool (2.4.6-2) ...
Setting up gettext (0.19.8.1-1) ...
Setting up ncbi-blast+ (2.4.0-3) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up dh-autoreconf (12) ...
Setting up dh-strip-nondeterminism (0.023-2) ...
Setting up debhelper (9.20160814) ...
Setting up sbuild-build-depends-proteinortho-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.23-4) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.5.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.10 g++-6_6.1.1-11+rpi1 gcc-6_6.1.1-11+rpi1 libc6-dev_2.23-4 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3~pre3 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-6 build-essential_12.2 bzip2_1.0.6-8 console-setup_1.147 console-setup-linux_1.147 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.1.1-11+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_9.20160814 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.023-2 diffutils_1:3.3-3 dmsetup_2:1.02.130-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160703-2 fuse2fs_1.43.1-1 g++_4:6.1.1-1 g++-6_6.1.1-11+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.0-4 gcc-6_6.1.1-11+rpi1 gcc-6-base_6.1.1-11+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 ifupdown_0.8.13 init_1.42 init-system-helpers_1.42 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 iproute2_4.6.0-1 kbd_2.0.3-2 keyboard-configuration_1.147 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg5.0_1.3~pre3 libarchive-zip-perl_1.59-1 libasan3_6.1.1-11+rpi1 libatm1_1:2.5.1-1.6 libatomic1_6.1.1-11+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.5-1 libaudit1_1:2.6.5-1 libblkid1_2.28-6 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-4 libc-dev-bin_2.23-4 libc6_2.23-4 libc6-dev_2.23-4 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11+rpi1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.8-1 libdebconfclient0_0.215 libdevmapper1.02.1_2:1.02.130-1 libdpkg-perl_1.18.10 libdrm2_2.4.70-1 libexpat1_2.2.0-1 libfakeroot_1.21-1 libfdisk1_2.28-6 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.023-2 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.1.1-11+rpi1 libgcc1_1:6.1.1-11+rpi1 libgcrypt20_1.7.2-2 libgdbm3_1.8.3-14 libglib2.0-0_2.48.1-3 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.1.1-11+rpi1 libgpg-error0_1.24-1 libicu57_57.1-3 libidn11_1.33-1 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 liblocale-gettext-perl_1.07-3 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28-6 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160625-1 libncursesw5_6.0+20160625-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-1 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-2 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-2 libpython2.7-stdlib_2.7.12-2 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-6 libsqlite3-0_3.14.1-1 libss2_1.43.1-1 libssl1.0.2_1.0.2h-1 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 libsystemd0_230-7+b1 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1 libtool_2.4.6-2 libubsan0_6.1.1-11+rpi1 libudev1_230-7+b1 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-6 libxml2_2.9.4+dfsg1-1+b1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.07-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28-6 multiarch-support_2.23-4 ncbi-blast+_2.4.0-3 ncbi-data_6.1.20120620-12 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 netbase_5.3 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 po-debconf_1.0.19 procps_2:3.3.12-2 psmisc_22.21-2.1 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-2 python2.7-minimal_2.7.12-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proteinortho-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_230-7+b1 systemd-sysv_230-7+b1 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tzdata_2016f-1 udev_230-7+b1 util-linux_2.28-6 xkb-data_2.17-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Aug 29 13:14:07 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./proteinortho_5.15+dfsg-1.dsc
dpkg-source: info: extracting proteinortho in proteinortho-5.15+dfsg
dpkg-source: info: unpacking proteinortho_5.15+dfsg.orig.tar.xz
dpkg-source: info: unpacking proteinortho_5.15+dfsg-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-3f8bb634-94b1-49a5-a240-6ee2014e5912
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package proteinortho
dpkg-buildpackage: info: source version 5.15+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build proteinortho-5.15+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -Wno-unused-result -fPIE -pie -Wl,-z,relro -Wl,-z,now -o proteinortho5_clustering proteinortho5_clustering.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -Wno-unused-result -fPIE -pie -Wl,-z,relro -Wl,-z,now -o proteinortho5_tree po_tree.c
make[1]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
dh_auto_test -a
make -j1 test
make[1]: Entering directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
./proteinortho5.pl -project=test -synteny -singles test/*.faa
*****************************************************************
Proteinortho with PoFF version 5.15 - An orthology detection tool
*****************************************************************
Detected 4 available CPU threads, Detected NCBI BLAST version 2.4.0+
Checking input files
test/C.faa 308 genes
test/E.faa 310 genes
test/L.faa 41 genes
test/M.faa 40 genes
**Step 1**
Generating indices
Building database for 'test/E.faa' (310 sequences)
Building database for 'test/C.faa' (308 sequences)
Building database for 'test/L.faa' (41 sequences)
Building database for 'test/M.faa' (40 sequences)
**Step 2**
Running blast analysis: 0% (0/6)
Running blast analysis: 16.66% (1/6)
Running blast analysis: 33.33% (2/6)
Running blast analysis: 100% (6/6)
Running blast analysis: 66.66% (4/6)
Running blast analysis: 83.33% (5/6)
Running blast analysis: 50% (3/6)
Running blast analysis: 100% (6/6)
-> Output written to test.blast-graph
**Step 3**
Clustering by similarity (Proteinortho mode)
Reading test.blast-graph
4 species
150 paired proteins
218 bidirectional edges
Clustering: 1.33%
Clustering: 2.67%
Clustering: 4.00%
Clustering: 5.33%
Clustering: 6.67%
Clustering: 8.00%
Clustering: 9.33%
Clustering: 10.67%
Clustering: 14.00%
Clustering: 15.33%
Clustering: 16.67%
Clustering: 18.67%
Clustering: 20.67%
Clustering: 22.00%
Clustering: 23.33%
Clustering: 26.00%
Clustering: 27.33%
Clustering: 28.00%
Clustering: 28.67%
Clustering: 30.00%
Clustering: 31.33%
Clustering: 32.67%
Clustering: 47.33%
Clustering: 50.67%
Clustering: 52.00%
Clustering: 53.33%
Clustering: 54.67%
Clustering: 56.00%
Clustering: 57.33%
Clustering: 58.67%
Clustering: 60.00%
Clustering: 62.67%
Clustering: 65.33%
Clustering: 68.00%
Clustering: 79.33%
Clustering: 100.00%
Done
Adding singles...
-> Output written to test.proteinortho
Writing graph...
Cleaning edge list...
Removed 27 / 218 edges
Done.
-> Output written to test.proteinortho-graph
Clustering by gene-order (POFF mode)
Reading test.ffadj-graph
4 species
130 paired proteins
155 bidirectional edges
Clustering: 1.54%
Clustering: 3.08%
Clustering: 4.62%
Clustering: 6.15%
Clustering: 7.69%
Clustering: 9.23%
Clustering: 10.77%
Clustering: 12.31%
Clustering: 13.85%
Clustering: 15.38%
Clustering: 16.92%
Clustering: 18.46%
Clustering: 19.23%
Clustering: 20.00%
Clustering: 21.54%
Clustering: 23.08%
Clustering: 24.62%
Clustering: 26.15%
Clustering: 27.69%
Clustering: 28.46%
Clustering: 29.23%
Clustering: 47.69%
Clustering: 49.23%
Clustering: 50.77%
Clustering: 52.31%
Clustering: 53.85%
Clustering: 55.38%
Clustering: 57.69%
Clustering: 59.23%
Clustering: 60.77%
Clustering: 62.31%
Clustering: 64.62%
Clustering: 66.15%
Clustering: 67.69%
Clustering: 69.23%
Clustering: 70.77%
Clustering: 72.31%
Clustering: 84.62%
Clustering: 87.69%
Clustering: 100.00%
Done
Adding singles...
-> Output written to test.poff
Writing graph...
Cleaning edge list...
Removed 4 / 155 edges
Done.
-> Output written to test.poff-graph
All finished.
Test okay
make[1]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
dh_auto_install --buildsystem=makefile -- install INSTALLDIR=/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho
make -j1 install DESTDIR=/<<BUILDDIR>>/proteinortho-5.15\+dfsg/debian/proteinortho AM_UPDATE_INFO_DIR=no install INSTALLDIR=/<<BUILDDIR>>/proteinortho-5.15\+dfsg/debian/proteinortho/usr/lib/proteinortho
make[2]: Entering directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
install -v proteinortho5.pl proteinortho5_clustering proteinortho5_singletons.pl proteinortho5_clean_edges2.pl ffadj_mcs.py po2tree.pl proteinortho5_tree /<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho
'proteinortho5.pl' -> '/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5.pl'
'proteinortho5_clustering' -> '/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clustering'
'proteinortho5_singletons.pl' -> '/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_singletons.pl'
'proteinortho5_clean_edges2.pl' -> '/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clean_edges2.pl'
'ffadj_mcs.py' -> '/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/ffadj_mcs.py'
'po2tree.pl' -> '/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/po2tree.pl'
'proteinortho5_tree' -> '/<<BUILDDIR>>/proteinortho-5.15+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_tree'
make[2]: 'install' is up to date.
make[2]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/proteinortho-5.15+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package proteinortho: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package proteinortho: unused substitution variable ${perl:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'proteinortho-dbgsym' in '../proteinortho-dbgsym_5.15+dfsg-1_armhf.deb'.
dpkg-deb: building package 'proteinortho' in '../proteinortho_5.15+dfsg-1_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../proteinortho_5.15+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build proteinortho-5.15+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160904-1153
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
proteinortho_5.15+dfsg-1_armhf.changes:
---------------------------------------
Format: 1.8
Date: Mon, 29 Aug 2016 15:10:00 +0200
Source: proteinortho
Binary: proteinortho
Architecture: armhf
Version: 5.15+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
proteinortho - Detection of (Co-)orthologs in large-scale protein analysis
Changes:
proteinortho (5.15+dfsg-1) unstable; urgency=medium
.
* New upstream version
Checksums-Sha1:
e6347995e30e03aff0d7e177d09d6786f549f0df 6472 proteinortho-dbgsym_5.15+dfsg-1_armhf.deb
e62996bf582356253f236e85bfa29886eb5437b6 246060 proteinortho_5.15+dfsg-1_armhf.deb
Checksums-Sha256:
0fbafb43d8a9e50f3a6200a21e5c807395cb0fc25ef95bef40a58aaf2fbb43ab 6472 proteinortho-dbgsym_5.15+dfsg-1_armhf.deb
197c7465d32515ff228e9b9aa3eed30a53a49046eb692f05bb6025b49e07b163 246060 proteinortho_5.15+dfsg-1_armhf.deb
Files:
6dcf51c82c5a1b4c924b30d19ccfe8a5 6472 debug extra proteinortho-dbgsym_5.15+dfsg-1_armhf.deb
6159fa378210f62952a3747cffb424e4 246060 science optional proteinortho_5.15+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
proteinortho-dbgsym_5.15+dfsg-1_armhf.deb
-----------------------------------------
new debian package, version 2.0.
size 6472 bytes: control archive=564 bytes.
502 bytes, 13 lines control
212 bytes, 2 lines md5sums
Package: proteinortho-dbgsym
Source: proteinortho
Version: 5.15+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 34
Depends: proteinortho (= 5.15+dfsg-1)
Section: debug
Priority: extra
Homepage: https://www.bioinf.uni-leipzig.de/Software/proteinortho/
Description: Debug symbols for proteinortho
Auto-Built-Package: debug-symbols
Build-Ids: 0a10899a71498879357b90e17dcc822c831683d3 7af060d0392f06fe4d05bed747bab598af46e5da
drwxr-xr-x root/root 0 2016-08-29 13:10 ./
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/lib/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/lib/debug/.build-id/0a/
-rw-r--r-- root/root 5576 2016-08-29 13:10 ./usr/lib/debug/.build-id/0a/10899a71498879357b90e17dcc822c831683d3.debug
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proteinortho_5.15+dfsg-1_armhf.deb
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new debian package, version 2.0.
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Package: proteinortho
Version: 5.15+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 370
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), ncbi-blast+, python
Section: science
Priority: optional
Homepage: https://www.bioinf.uni-leipzig.de/Software/proteinortho/
Description: Detection of (Co-)orthologs in large-scale protein analysis
Proteinortho is a stand-alone tool that is geared towards large datasets
and makes use of distributed computing techniques when run on multi-core
hardware. It implements an extended version of the reciprocal best
alignment heuristic. Proteinortho was applied to compute orthologous
proteins in the complete set of all 717 eubacterial genomes available at
NCBI at the beginning of 2009. Authors succeeded identifying thirty
proteins present in 99% of all bacterial proteomes.
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drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/bin/
-rwxr-xr-x root/root 52 2016-08-29 13:10 ./usr/bin/proteinortho5
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/lib/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/lib/proteinortho/
-rwxr-xr-x root/root 35339 2016-08-29 13:10 ./usr/lib/proteinortho/ffadj_mcs.py
-rwxr-xr-x root/root 4888 2016-08-29 13:10 ./usr/lib/proteinortho/po2tree.pl
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-rwxr-xr-x root/root 1077 2016-08-29 13:10 ./usr/lib/proteinortho/proteinortho5_clean_edges2.pl
-rwxr-xr-x root/root 54852 2016-08-29 13:10 ./usr/lib/proteinortho/proteinortho5_clustering
-rwxr-xr-x root/root 1616 2016-08-29 13:10 ./usr/lib/proteinortho/proteinortho5_singletons.pl
-rwxr-xr-x root/root 9676 2016-08-29 13:10 ./usr/lib/proteinortho/proteinortho5_tree
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/share/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/share/doc/proteinortho/
-rw-r--r-- root/root 263 2016-08-29 13:10 ./usr/share/doc/proteinortho/README.test
-rw-r--r-- root/root 381 2016-08-29 13:10 ./usr/share/doc/proteinortho/changelog.Debian.gz
-rw-r--r-- root/root 1177 2016-08-29 13:10 ./usr/share/doc/proteinortho/copyright
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/share/doc/proteinortho/examples/
-rw-r--r-- root/root 77324 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/C.faa.gz
-rw-r--r-- root/root 1867 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/C.gff.gz
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-rw-r--r-- root/root 393 2016-08-29 13:10 ./usr/share/doc/proteinortho/run-unit-test
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/share/doc/proteinortho/tools/
-rw-r--r-- root/root 1209 2016-04-22 08:52 ./usr/share/doc/proteinortho/tools/comp_bla.pl
-rw-r--r-- root/root 2638 2016-04-22 08:52 ./usr/share/doc/proteinortho/tools/grab_proteins.pl
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/share/man/
drwxr-xr-x root/root 0 2016-08-29 13:10 ./usr/share/man/man1/
-rw-r--r-- root/root 1381 2016-08-29 13:10 ./usr/share/man/man1/proteinortho5.1.gz
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| Summary |
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Build Architecture: armhf
Build-Space: 2256
Build-Time: 247
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 283
Job: proteinortho_5.15+dfsg-1
Machine Architecture: armhf
Package: proteinortho
Package-Time: 582
Source-Version: 5.15+dfsg-1
Space: 2256
Status: successful
Version: 5.15+dfsg-1
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Finished at 20160904-1153
Build needed 00:09:42, 2256k disc space