proteinortho →
5.11+dfsg-1 →
armhf → 2015-11-27 09:19:54
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-02
╔══════════════════════════════════════════════════════════════════════════════╗
║ proteinortho 5.11+dfsg-1 (armhf) 27 Nov 2015 09:09 ║
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Package: proteinortho
Version: 5.11+dfsg-1
Source Version: 5.11+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/proteinortho-MghkND/proteinortho-5.11+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/proteinortho-MghkND' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e0113ab1-e2cf-4343-8a90-2513ac06964e' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
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Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8491 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.4 MB]
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NOTICE: 'proteinortho' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/proteinortho.git
Need to get 236 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main proteinortho 5.11+dfsg-1 (dsc) [2035 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main proteinortho 5.11+dfsg-1 (tar) [230 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main proteinortho 5.11+dfsg-1 (diff) [4344 B]
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Merged Build-Depends: build-essential, fakeroot
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dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-pfBdw3/apt_archive/sbuild-build-depends-core-dummy.deb'.
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│ Install core build dependencies (apt-based resolver) │
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), ncbi-blast+
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), ncbi-blast+
dpkg-deb: building package 'sbuild-build-depends-proteinortho-dummy' in '/«BUILDDIR»/resolver-MYXSHm/apt_archive/sbuild-build-depends-proteinortho-dummy.deb'.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install proteinortho build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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The following extra packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.2 libunistring0 libxml2 man-db mime-support
ncbi-blast+ ncbi-data po-debconf python python-minimal python2.7
python2.7-minimal
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
python-doc python-tk python2.7-doc binfmt-support
Recommended packages:
curl wget lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
libsqlite3-0 libssl1.0.2 libunistring0 libxml2 man-db mime-support
ncbi-blast+ ncbi-data po-debconf python python-minimal python2.7
python2.7-minimal sbuild-build-depends-proteinortho-dummy
0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded.
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Get:17 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
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Get:19 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
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Get:21 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-6 [7379 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.46.2-1 [2482 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.9-1 [129 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libarchive-zip-perl all 1.53-1 [97.3 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:31 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20151005 [817 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main ncbi-data all 6.1.20120620-8 [3320 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main ncbi-blast+ armhf 2.2.30-4+b1 [6733 kB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-7 dpkg-dev_1.18.3 g++-5_5.2.1-23+rpi1 gcc-5_5.2.1-23+rpi1 libc6-dev_2.19-22 libstdc++-4.9-dev_4.9.3-5 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-7 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-5_5.2.1-23+rpi1 dash_0.5.7-4 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.110-1+rpi1 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 g++_4:5.2.1-4+rpi2 g++-5_5.2.1-23+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1 gcc-4.9-base_4.9.3-5 gcc-5_5.2.1-23+rpi1 gcc-5-base_5.2.1-23+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-6 gpgv_1.4.19-6 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2+b2 libapt-pkg4.12_1.0.9.10 libapt-pkg4.16_1.0.10.2 libarchive-zip-perl_1.53-1 libasan1_4.9.3-5 libasan2_5.2.1-23+rpi1 libatomic1_5.2.1-23+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libblkid1_2.27.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.19-22 libc-dev-bin_2.19-22 libc6_2.19-22 libc6-dev_2.19-22 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-23+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.10.4-1 libdebconfclient0_0.197 libdevmapper1.02.1_2:1.02.110-1+rpi1 libdpkg-perl_1.18.3 libdrm2_2.4.65-3 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.014-1 libgc1c2_1:7.4.2-7 libgcc-4.9-dev_4.9.3-5 libgcc-5-dev_5.2.1-23+rpi1 libgcc1_1:5.2.1-23+rpi1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-1 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.2.1-23+rpi1 libgpg-error0_1.20-1 libicu55_55.1-6 libisl13_0.14-2 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblocale-gettext-perl_1.07-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.4 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-5+b1 libpython2.7-stdlib_2.7.10-5+b1 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2+b1 libsmartcols1_2.27.1-1 libsqlite3-0_3.9.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2d-3 libstdc++-4.9-dev_4.9.3-5 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 libsystemd0_228-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.2.1-23+rpi1 libudev1_228-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libxml2_2.9.2+zdfsg1-4 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-1 multiarch-support_2.19-22 nano_2.4.2-1 ncbi-blast+_2.2.30-4+b1 ncbi-data_6.1.20120620-8 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.10-5+b1 python2.7-minimal_2.7.10-5+b1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-proteinortho-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_228-2 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Nov 13 10:20:08 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./proteinortho_5.11+dfsg-1.dsc
dpkg-source: info: extracting proteinortho in proteinortho-5.11+dfsg
dpkg-source: info: unpacking proteinortho_5.11+dfsg.orig.tar.gz
dpkg-source: info: unpacking proteinortho_5.11+dfsg-1.debian.tar.xz
dpkg-source: info: applying hardening.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e0113ab1-e2cf-4343-8a90-2513ac06964e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package proteinortho
dpkg-buildpackage: source version 5.11+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build proteinortho-5.11+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
make -j1
make[1]: Entering directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
g++ -D_FORTIFY_SOURCE=2 -Wall -O3 -Wl,-z,relro -o proteinortho5_clustering proteinortho5_clustering.cpp
g++ -D_FORTIFY_SOURCE=2 -Wall -O3 -Wl,-z,relro -o proteinortho5_clean_edges proteinortho5_clean_edges.cpp
make[1]: Leaving directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
dh_auto_test -a
make -j1 test
make[1]: Entering directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
./proteinortho5.pl -project=test -synteny -singles test/*.faa
Proteinortho with PoFF version 5.11 - An orthology detection tool
******************************************************************
Detected 4 available CPU threads, Detected NCBI BLAST version 2.2.30+
Checking input files
test/C.faa 308 genes
test/E.faa 310 genes
test/L.faa 41 genes
test/M.faa 40 genes
**Step 1**
Generating indices
Building database for 'test/E.faa' (310 sequences)
Building database for 'test/C.faa' (308 sequences)
Building database for 'test/L.faa' (41 sequences)
Building database for 'test/M.faa' (40 sequences)
**Step 2**
Running blast analysis: 0% (0/6)
Running blast analysis: 16.66% (1/6)
Running blast analysis: 33.33% (2/6)
Running blast analysis: 100% (6/6)
Running blast analysis: 50% (3/6)
Running blast analysis: 66.66% (4/6)
Running blast analysis: 83.33% (5/6)
Running blast analysis: 100% (6/6)
-> Output written to test.blast-graph
**Step 3**
Clustering by similarity (Proteinortho mode)
Reading test.blast-graph
4 species
150 paired proteins
218 bidirectional edges
Clustering: 1.33%
Clustering: 2.67%
Clustering: 4.00%
Clustering: 5.33%
Clustering: 6.67%
Clustering: 8.00%
Clustering: 9.33%
Clustering: 10.67%
Clustering: 14.00%
Clustering: 15.33%
Clustering: 16.67%
Clustering: 18.67%
Clustering: 19.33%
Clustering: 20.67%
Clustering: 22.00%
Clustering: 23.33%
Clustering: 26.00%
Clustering: 27.33%
Clustering: 28.00%
Clustering: 28.67%
Clustering: 30.00%
Clustering: 32.67%
Clustering: 47.33%
Clustering: 50.67%
Clustering: 52.00%
Clustering: 53.33%
Clustering: 54.67%
Clustering: 56.00%
Clustering: 57.33%
Clustering: 58.67%
Clustering: 60.00%
Clustering: 62.67%
Clustering: 65.33%
Clustering: 68.00%
Clustering: 79.33%
Clustering: 80.67%
Clustering: 100.00%
Done
Adding singles...
-> Output written to test.proteinortho
Writing graph...
Cleaning edge list...
Removed 31 / 218 edges
Done.
-> Output written to test.proteinortho-graph
Clustering by gene-order (POFF mode)
Reading test.ffadj-graph
4 species
130 paired proteins
155 bidirectional edges
Clustering: 1.54%
Clustering: 3.08%
Clustering: 4.62%
Clustering: 6.15%
Clustering: 7.69%
Clustering: 9.23%
Clustering: 10.77%
Clustering: 12.31%
Clustering: 13.85%
Clustering: 15.38%
Clustering: 16.92%
Clustering: 18.46%
Clustering: 20.00%
Clustering: 21.54%
Clustering: 23.08%
Clustering: 24.62%
Clustering: 26.15%
Clustering: 27.69%
Clustering: 28.46%
Clustering: 29.23%
Clustering: 47.69%
Clustering: 49.23%
Clustering: 50.77%
Clustering: 52.31%
Clustering: 53.85%
Clustering: 55.38%
Clustering: 56.92%
Clustering: 58.46%
Clustering: 60.00%
Clustering: 61.54%
Clustering: 63.08%
Clustering: 64.62%
Clustering: 66.15%
Clustering: 67.69%
Clustering: 69.23%
Clustering: 70.77%
Clustering: 72.31%
Clustering: 84.62%
Clustering: 87.69%
Clustering: 100.00%
Done
Adding singles...
-> Output written to test.poff
Writing graph...
Cleaning edge list...
Removed 3 / 155 edges
Done.
-> Output written to test.poff-graph
All finished.
Test okay
make[1]: Leaving directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
dh_auto_install --buildsystem=makefile -- install INSTALLDIR=/«BUILDDIR»/proteinortho-5.11+dfsg/debian/proteinortho/usr/lib/proteinortho
make -j1 install DESTDIR=/«BUILDDIR»/proteinortho-5.11\+dfsg/debian/proteinortho AM_UPDATE_INFO_DIR=no install INSTALLDIR=/«BUILDDIR»/proteinortho-5.11\+dfsg/debian/proteinortho/usr/lib/proteinortho
make[2]: Entering directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
install -v proteinortho5.pl proteinortho5_clustering proteinortho5_clean_edges2.pl proteinortho5_singletons.pl ffadj_mcs.py /«BUILDDIR»/proteinortho-5.11+dfsg/debian/proteinortho/usr/lib/proteinortho
'proteinortho5.pl' -> '/«BUILDDIR»/proteinortho-5.11+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5.pl'
'proteinortho5_clustering' -> '/«BUILDDIR»/proteinortho-5.11+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clustering'
'proteinortho5_clean_edges2.pl' -> '/«BUILDDIR»/proteinortho-5.11+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_clean_edges2.pl'
'proteinortho5_singletons.pl' -> '/«BUILDDIR»/proteinortho-5.11+dfsg/debian/proteinortho/usr/lib/proteinortho/proteinortho5_singletons.pl'
'ffadj_mcs.py' -> '/«BUILDDIR»/proteinortho-5.11+dfsg/debian/proteinortho/usr/lib/proteinortho/ffadj_mcs.py'
make[2]: 'install' is up to date.
make[2]: Leaving directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
make[1]: Leaving directory '/«BUILDDIR»/proteinortho-5.11+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/proteinortho/usr/lib/proteinortho/proteinortho5_clustering contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package proteinortho: unused substitution variable ${perl:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'proteinortho' in '../proteinortho_5.11+dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../proteinortho_5.11+dfsg-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build proteinortho-5.11+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151127-0919
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
proteinortho_5.11+dfsg-1_armhf.changes:
───────────────────────────────────────
Format: 1.8
Date: Fri, 13 Nov 2015 11:18:29 +0100
Source: proteinortho
Binary: proteinortho
Architecture: armhf
Version: 5.11+dfsg-1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
proteinortho - Detection of (Co-)orthologs in large-scale protein analysis
Closes: 804995
Changes:
proteinortho (5.11+dfsg-1) unstable; urgency=low
.
* Initial release (Closes: #804995)
Checksums-Sha1:
dfabd3af001cb947c952c77fe1dc55826163851f 238634 proteinortho_5.11+dfsg-1_armhf.deb
Checksums-Sha256:
e16b9bc7a606a3099fa616ee4f0060f4f983c2860fdfa36bf9e6bb6edd0d3169 238634 proteinortho_5.11+dfsg-1_armhf.deb
Files:
e80430d3890bc2b2a86945236ed62cc6 238634 science optional proteinortho_5.11+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
proteinortho_5.11+dfsg-1_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 238634 bytes: control archive=1430 bytes.
914 bytes, 17 lines control
1687 bytes, 22 lines md5sums
Package: proteinortho
Version: 5.11+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 346
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 5.2), ncbi-blast+, python
Section: science
Priority: optional
Homepage: https://www.bioinf.uni-leipzig.de/Software/proteinortho/
Description: Detection of (Co-)orthologs in large-scale protein analysis
Proteinortho is a stand-alone tool that is geared towards large datasets
and makes use of distributed computing techniques when run on multi-core
hardware. It implements an extended version of the reciprocal best
alignment heuristic. Proteinortho was applied to compute orthologous
proteins in the complete set of all 717 eubacterial genomes available at
NCBI at the beginning of 2009. Authors succeeded identifying thirty
proteins present in 99% of all bacterial proteomes.
drwxr-xr-x root/root 0 2015-11-27 09:18 ./
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/
drwxr-xr-x root/root 0 2015-11-13 10:19 ./usr/bin/
-rwxr-xr-x root/root 52 2015-11-13 10:19 ./usr/bin/proteinortho5
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/lib/
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/lib/proteinortho/
-rwxr-xr-x root/root 35217 2015-11-27 09:18 ./usr/lib/proteinortho/ffadj_mcs.py
-rwxr-xr-x root/root 36150 2015-11-27 09:18 ./usr/lib/proteinortho/proteinortho5.pl
-rwxr-xr-x root/root 1077 2015-11-27 09:18 ./usr/lib/proteinortho/proteinortho5_clean_edges2.pl
-rwxr-xr-x root/root 46784 2015-11-27 09:18 ./usr/lib/proteinortho/proteinortho5_clustering
-rwxr-xr-x root/root 1616 2015-11-27 09:18 ./usr/lib/proteinortho/proteinortho5_singletons.pl
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/share/
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/share/doc/proteinortho/
-rw-r--r-- root/root 263 2015-11-13 10:19 ./usr/share/doc/proteinortho/README.test
-rw-r--r-- root/root 161 2015-11-13 10:19 ./usr/share/doc/proteinortho/changelog.Debian.gz
-rw-r--r-- root/root 1118 2015-11-13 10:19 ./usr/share/doc/proteinortho/copyright
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/share/doc/proteinortho/examples/
-rw-r--r-- root/root 77324 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/C.faa.gz
-rw-r--r-- root/root 1867 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/C.gff.gz
-rw-r--r-- root/root 84291 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/E.faa.gz
-rw-r--r-- root/root 1880 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/E.gff.gz
-rw-r--r-- root/root 14428 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/L.faa.gz
-rw-r--r-- root/root 2376 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/L.gff
-rw-r--r-- root/root 14230 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/M.faa.gz
-rw-r--r-- root/root 2317 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/M.gff
-rwxr-xr-x root/root 238 2014-07-26 13:44 ./usr/share/doc/proteinortho/examples/chk_test.pl
-rw-r--r-- root/root 393 2015-11-13 10:19 ./usr/share/doc/proteinortho/run-unit-test
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/share/doc/proteinortho/tools/
-rw-r--r-- root/root 1209 2014-07-26 13:44 ./usr/share/doc/proteinortho/tools/comp_bla.pl
-rw-r--r-- root/root 2638 2014-07-26 13:44 ./usr/share/doc/proteinortho/tools/grab_proteins.pl
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/share/man/
drwxr-xr-x root/root 0 2015-11-27 09:18 ./usr/share/man/man1/
-rw-r--r-- root/root 1381 2015-11-27 09:18 ./usr/share/man/man1/proteinortho5.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 2160
Build-Time: 236
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 277
Job: proteinortho_5.11+dfsg-1
Machine Architecture: armhf
Package: proteinortho
Package-Time: 572
Source-Version: 5.11+dfsg-1
Space: 2160
Status: successful
Version: 5.11+dfsg-1
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Finished at 20151127-0919
Build needed 00:09:32, 2160k disc space