petsc →
3.8.4+dfsg1-1+b1 →
armhf → 2018-04-13 15:14:16
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| petsc 3.8.4+dfsg1-1+b1 (armhf) Fri, 13 Apr 2018 14:19:30 +0000 |
+==============================================================================+
Package: petsc
Version: 3.8.4+dfsg1-1+b1
Source Version: 3.8.4+dfsg1-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-7173da5f-b9b6-4c9a-82ba-4916ccf161e0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.4 MB]
Fetched 23.1 MB in 28s (839 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'petsc' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/science-team/petsc.git
Please use:
git clone https://salsa.debian.org/science-team/petsc.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 24.5 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main petsc 3.8.4+dfsg1-1 (dsc) [2988 B]
Get:2 http://172.17.0.1/private buster-staging/main petsc 3.8.4+dfsg1-1 (tar) [24.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main petsc 3.8.4+dfsg1-1 (diff) [40.6 kB]
Fetched 24.5 MB in 3s (7489 kB/s)
Download complete and in download only mode
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
I: NOTICE: Log filtering will replace 'build/petsc-m8B9pU/petsc-3.8.4+dfsg1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/petsc-m8B9pU' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0NMjJz/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0NMjJz/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0NMjJz/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Packages [429 B]
Fetched 2105 B in 1s (2428 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (16.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15677 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), quilt, python (>= 2.2), gfortran, pkg-config, dh-python, mpi-default-dev (>= 1.0.2), libblas-dev | libopenblas-dev | libatlas-base-dev | libblas.so, liblapack-dev | libopenblas-dev | libatlas-base-dev | liblapack.so, libsuitesparse-dev (>= 1:4.2.1), libspooles-dev (>= 2.2-6), libhypre-dev (>= 2.11.1-3), libptscotch-dev, libhdf5-mpi-dev (>= 1.8.8), libscalapack-mpi-dev, libmumps-dev, libfftw3-dev, libfftw3-mpi-dev, libssl-dev, libsuperlu-dev (>= 5.2), libsuperlu-dist-dev
Filtered Build-Depends: debhelper (>= 11), quilt, python (>= 2.2), gfortran, pkg-config, dh-python, mpi-default-dev (>= 1.0.2), libblas-dev, liblapack-dev, libsuitesparse-dev (>= 1:4.2.1), libspooles-dev (>= 2.2-6), libhypre-dev (>= 2.11.1-3), libptscotch-dev, libhdf5-mpi-dev (>= 1.8.8), libscalapack-mpi-dev, libmumps-dev, libfftw3-dev, libfftw3-mpi-dev, libssl-dev, libsuperlu-dev (>= 5.2), libsuperlu-dist-dev
dpkg-deb: building package 'sbuild-build-depends-petsc-dummy' in '/<<BUILDDIR>>/resolver-0NMjJz/apt_archive/sbuild-build-depends-petsc-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-petsc-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Sources [680 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ Packages [734 B]
Fetched 2747 B in 1s (4186 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: store: aptMethod::Configuration: could not load seccomp policy: Invalid argument
Reading package lists...
Install petsc build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism diffstat file gettext
gettext-base gfortran gfortran-7 groff-base ibverbs-providers
intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libblas-dev
libblas3 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2
libcroco3 libcxsparse3 libfftw3-bin libfftw3-dev libfftw3-double3
libfftw3-mpi-dev libfftw3-mpi3 libfftw3-single3
libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0
libgraphblas2 libhdf5-mpi-dev libhdf5-openmpi-100 libhdf5-openmpi-dev
libhwloc-dev libhwloc-plugins libhwloc5 libhypre-2.14.0 libhypre-dev
libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libklu1 liblapack-dev liblapack3 libldl2 libltdl-dev
libltdl7 libmagic-mgc libmagic1 libmetis5 libmpdec2 libmumps-5.1.2
libmumps-dev libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi2
libpciaccess0 libpipeline1 libptscotch-6.0 libptscotch-dev libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib librbio2 libscalapack-mpi-dev
libscalapack-openmpi-dev libscalapack-openmpi2.0 libscotch-6.0 libscotch-dev
libsigsegv2 libspooles-dev libspooles2.2 libspqr2 libssl-dev
libsuitesparse-dev libsuitesparseconfig5 libsuperlu-dev libsuperlu-dist-dev
libsuperlu-dist5 libsuperlu5 libsz2 libtimedate-perl libtool libumfpack5
libxml2 m4 man-db mime-support mpi-default-bin mpi-default-dev
ocl-icd-libopencl1 openmpi-bin openmpi-common pkg-config po-debconf python
python-minimal python2.7 python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.6 python3.6-minimal quilt zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff
liblapack-doc libfftw3-doc libhdf5-doc libhwloc-contrib-plugins libtool-doc
openmpi-doc pciutils scalapack-doc spooles-doc libsuperlu-doc gcj-jdk m4-doc
apparmor less www-browser opencl-icd libmail-box-perl python-doc python-tk
python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.6-venv python3.6-doc procmail graphviz default-mta
| mail-transport-agent
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libssl-doc libmail-sendmail-perl less
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism diffstat file gettext
gettext-base gfortran gfortran-7 groff-base ibverbs-providers
intltool-debian libaec-dev libaec0 libamd2 libarchive-zip-perl libblas-dev
libblas3 libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2
libcroco3 libcxsparse3 libfftw3-bin libfftw3-dev libfftw3-double3
libfftw3-mpi-dev libfftw3-mpi3 libfftw3-single3
libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0
libgraphblas2 libhdf5-mpi-dev libhdf5-openmpi-100 libhdf5-openmpi-dev
libhwloc-dev libhwloc-plugins libhwloc5 libhypre-2.14.0 libhypre-dev
libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libklu1 liblapack-dev liblapack3 libldl2 libltdl-dev
libltdl7 libmagic-mgc libmagic1 libmetis5 libmpdec2 libmumps-5.1.2
libmumps-dev libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi2
libpciaccess0 libpipeline1 libptscotch-6.0 libptscotch-dev libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib librbio2 libscalapack-mpi-dev
libscalapack-openmpi-dev libscalapack-openmpi2.0 libscotch-6.0 libscotch-dev
libsigsegv2 libspooles-dev libspooles2.2 libspqr2 libssl-dev
libsuitesparse-dev libsuitesparseconfig5 libsuperlu-dev libsuperlu-dist-dev
libsuperlu-dist5 libsuperlu5 libsz2 libtimedate-perl libtool libumfpack5
libxml2 m4 man-db mime-support mpi-default-bin mpi-default-dev
ocl-icd-libopencl1 openmpi-bin openmpi-common pkg-config po-debconf python
python-minimal python2.7 python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.6 python3.6-minimal quilt
sbuild-build-depends-petsc-dummy zlib1g-dev
0 upgraded, 128 newly installed, 0 to remove and 1 not upgraded.
Need to get 46.6 MB/61.7 MB of archives.
After this operation, 267 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0NMjJz/apt_archive ./ sbuild-build-depends-petsc-dummy 0.invalid.0 [1020 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-8 [393 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-8 [1076 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-4 [41.0 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-8 [1843 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.14-8 [293 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-4 [20.4 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-4 [155 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.5~rc1-1 [565 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.5~rc1-1 [1234 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.5~rc1-1 [1585 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.5~rc1-1 [79.0 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.5~rc1-1 [147 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.5~rc1-1 [229 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.4-1 [19.3 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180326 [93.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.4-1 [22.3 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 17 [16.5 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.0-4 [2749 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.6 [1009 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf diffstat armhf 1.61-1 [29.4 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-12 [191 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-12 [232 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-12 [5454 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:45 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 17.1-1 [38.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 17.1-1 [19.3 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libsuitesparseconfig5 armhf 1:5.2.0+dfsg-1 [20.2 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libamd2 armhf 1:5.2.0+dfsg-1 [26.5 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-4 [112 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libbtf1 armhf 1:5.2.0+dfsg-1 [20.5 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libcamd2 armhf 1:5.2.0+dfsg-1 [27.1 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libccolamd2 armhf 1:5.2.0+dfsg-1 [27.8 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libcolamd2 armhf 1:5.2.0+dfsg-1 [24.8 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libcholmod3 armhf 1:5.2.0+dfsg-1 [206 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libcxsparse3 armhf 1:5.2.0+dfsg-1 [48.6 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libfftw3-double3 armhf 3.3.7-1 [430 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libfftw3-single3 armhf 3.3.7-1 [626 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libfftw3-bin armhf 3.3.7-1 [43.6 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libfftw3-dev armhf 3.3.7-1 [1050 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.10-1+rpi1 [85.7 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.10-1+rpi1 [15.4 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libfftw3-mpi3 armhf 3.3.7-1 [49.3 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libfftw3-mpi-dev armhf 3.3.7-1 [53.8 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libgraphblas2 armhf 1:5.2.0+dfsg-1 [383 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2 [159 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.10-1+rpi1 [141 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libscotch-6.0 armhf 6.0.4.dfsg1-8 [364 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libptscotch-6.0 armhf 6.0.4.dfsg1-8 [591 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dist5 armhf 5.3.0+dfsg1-1 [173 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libhypre-2.14.0 armhf 2.14.0-2 [1252 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.7.1-4 [1564 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 17.1-1 [89.8 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 2.1.1-8+rpi1 [1024 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.10 [5180 B]
Get:79 http://172.17.0.1/private buster-staging/main armhf libhypre-dev armhf 2.14.0-2 [153 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libklu1 armhf 1:5.2.0+dfsg-1 [48.2 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libldl2 armhf 1:5.2.0+dfsg-1 [20.4 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf mpi-default-bin armhf 1.10 [4376 B]
Get:83 http://172.17.0.1/private buster-staging/main armhf libscalapack-openmpi2.0 armhf 2.0.2-4 [1117 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libmumps-5.1.2 armhf 5.1.2-4 [961 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libscalapack-openmpi-dev armhf 2.0.2-4 [12.2 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libscalapack-mpi-dev armhf 2.0.2-4 [8176 B]
Get:87 http://172.17.0.1/private buster-staging/main armhf libmumps-dev armhf 5.1.2-4 [914 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libscotch-dev armhf 6.0.4.dfsg1-8 [1615 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libptscotch-dev armhf 6.0.4.dfsg1-8 [3156 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf librbio2 armhf 1:5.2.0+dfsg-1 [29.1 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libspqr2 armhf 1:5.2.0+dfsg-1 [64.7 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libssl-dev armhf 1.1.0h-2 [1375 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libumfpack5 armhf 1:5.2.0+dfsg-1 [125 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libsuitesparse-dev armhf 1:5.2.0+dfsg-1 [895 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dist-dev armhf 5.3.0+dfsg1-1 [27.3 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf quilt all 0.63-8.2 [308 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libhdf5-openmpi-dev armhf 1.10.0-patch1+docs-4 [2055 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libhdf5-mpi-dev armhf 1.10.0-patch1+docs-4 [27.8 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libspooles2.2 armhf 2.2-12+b2 [371 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libspooles-dev armhf 2.2-12+b2 [485 kB]
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Setting up openmpi-common (2.1.1-8+rpi1) ...
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Setting up libptscotch-6.0 (6.0.4.dfsg1-8) ...
Setting up libumfpack5:armhf (1:5.2.0+dfsg-1) ...
Setting up libfftw3-mpi3:armhf (3.3.7-1) ...
Setting up libspooles2.2:armhf (2.2-12+b2) ...
Setting up openmpi-bin (2.1.1-8+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
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Setting up libhypre-2.14.0:armhf (2.14.0-2) ...
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Setting up dh-python (3.20180326) ...
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Setting up python3-lib2to3 (3.6.5~rc1-1) ...
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Setting up debhelper (11.1.6) ...
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Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
W: copy: aptMethod::Configuration: could not load seccomp policy: Invalid argument
W: http: aptMethod::Configuration: could not load seccomp policy: Invalid argument
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-8+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-12 gcc-7_7.3.0-12 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180402-1+rpi1 linux-libc-dev_4.15.11-1+rpi1
Package versions: adduser_3.117 apt_1.6~beta1 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4.18-2 binutils_2.30-8+rpi1 binutils-arm-linux-gnueabihf_2.30-8+rpi1 binutils-common_2.30-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-12 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 debconf_1.5.66 debhelper_11.1.6 debianutils_4.8.4 dh-autoreconf_17 dh-python_3.20180326 dh-strip-nondeterminism_0.040-1 diffstat_1.61-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 e2fsprogs-l10n_1.44.1-1 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.32-2 findutils_4.6.0+git+20171230-2 g++_4:7.2.0-1d1 g++-7_7.3.0-12 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-12 gcc-7-base_7.3.0-12 gcc-8-base_8-20180402-1+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gfortran_4:7.2.0-1d1 gfortran-7_7.3.0-12 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 ibverbs-providers_17.1-1 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libamd2_1:5.2.0+dfsg-1 libapparmor1_2.12-4 libapt-pkg5.0_1.6~beta1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-12 libassuan0_2.5.1-2 libatomic1_8-20180402-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-8+rpi1 libblas-dev_3.7.1-4 libblas3_3.7.1-4 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbtf1_1:5.2.0+dfsg-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcamd2_1:5.2.0+dfsg-1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180402-1+rpi1 libccolamd2_1:5.2.0+dfsg-1 libcholmod3_1:5.2.0+dfsg-1 libcilkrts5_7.3.0-12 libcolamd2_1:5.2.0+dfsg-1 libcom-err2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libcxsparse3_1:5.2.0+dfsg-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.6-2 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libexpat1_2.2.5-3 libext2fs2_1.44.1-1 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfftw3-bin_3.3.7-1 libfftw3-dev_3.3.7-1 libfftw3-double3_3.3.7-1 libfftw3-mpi-dev_3.3.7-1 libfftw3-mpi3_3.3.7-1 libfftw3-single3_3.3.7-1 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.3.0-12 libgcc1_1:8-20180402-1+rpi1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-12 libgfortran4_7.3.0-12 libglib2.0-0_2.56.0-4 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180402-1+rpi1 libgpg-error0_1.28-2 libgraphblas2_1:5.2.0+dfsg-1 libhdf5-mpi-dev_1.10.0-patch1+docs-4 libhdf5-openmpi-100_1.10.0-patch1+docs-4 libhdf5-openmpi-dev_1.10.0-patch1+docs-4 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1+rpi1 libhwloc-plugins_1.11.10-1+rpi1 libhwloc5_1.11.10-1+rpi1 libhypre-2.14.0_2.14.0-2 libhypre-dev_2.14.0-2 libibverbs-dev_17.1-1 libibverbs1_17.1-1 libicu57_57.1-9 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-4 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libklu1_1:5.2.0+dfsg-1 libkmod2_25-1 libksba8_1.3.5-2 liblapack-dev_3.7.1-4 liblapack3_3.7.1-4 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libldl2_1:5.2.0+dfsg-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmetis5_5.1.0.dfsg-5 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpdec2_2.4.2-1 libmpfr6_4.0.1-1 libmumps-5.1.2_5.1.2-4 libmumps-dev_5.1.2-4 libncurses5_6.1-1 libncursesw5_6.1-1 libnettle6_3.4-1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnpth0_1.5-3 libnss-systemd_238-4 libopenmpi-dev_2.1.1-8+rpi1 libopenmpi2_2.1.1-8+rpi1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.1-5 libpipeline1_1.5.0-1 libplymouth4_0.9.3-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-4 libptscotch-6.0_6.0.4.dfsg1-8 libptscotch-dev_6.0.4.dfsg1-8 libpython-stdlib_2.7.14-4 libpython2.7-minimal_2.7.14-8 libpython2.7-stdlib_2.7.14-8 libpython3-stdlib_3.6.4-1 libpython3.6-minimal_3.6.5~rc1-1 libpython3.6-stdlib_3.6.5~rc1-1 librbio2_1:5.2.0+dfsg-1 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libscalapack-mpi-dev_2.0.2-4 libscalapack-openmpi-dev_2.0.2-4 libscalapack-openmpi2.0_2.0.2-4 libscotch-6.0_6.0.4.dfsg1-8 libscotch-dev_6.0.4.dfsg1-8 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-1 libsmartcols1_2.31.1-0.5 libspooles-dev_2.2-12+b2 libspooles2.2_2.2-12+b2 libspqr2_1:5.2.0+dfsg-1 libsqlite3-0_3.23.0-1 libss2_1.44.1-1 libssl-dev_1.1.0h-2 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-12 libstdc++6_8-20180402-1+rpi1 libsuitesparse-dev_1:5.2.0+dfsg-1 libsuitesparseconfig5_1:5.2.0+dfsg-1 libsuperlu-dev_5.2.1+dfsg1-3 libsuperlu-dist-dev_5.3.0+dfsg1-1 libsuperlu-dist5_5.3.0+dfsg1-1 libsuperlu5_5.2.1+dfsg1-3 libsystemd0_238-4 libsz2_1.0.2-1 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1 libtool_2.4.6-2 libubsan0_7.3.0-12 libudev1_238-4 libumfpack5_1:5.2.0+dfsg-1 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.15.11-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mime-support_3.60 mount_2.31.1-0.5 mpi-default-bin_1.10 mpi-default-dev_1.10 multiarch-support_2.27-3+rpi1 nano_2.9.5-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 netbase_5.4 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_2.1.1-8+rpi1 openmpi-common_2.1.1-8+rpi1 openssl_1.1.0h-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.1-5 perl-base_5.26.1-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-5 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-4 python_2.7.14-4 python-minimal_2.7.14-4 python2.7_2.7.14-8 python2.7-minimal_2.7.14-8 python3_3.6.4-1 python3-distutils_3.6.5~rc1-1 python3-lib2to3_3.6.5~rc1-1 python3-minimal_3.6.4-1 python3.6_3.6.5~rc1-1 python3.6-minimal_3.6.5~rc1-1 quilt_0.63-8.2 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-petsc-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018d-1 udev_238-4 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Apr 1 10:35:57 2018 UTC
gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA
gpgv: issuer "dparsons@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./petsc_3.8.4+dfsg1-1.dsc
dpkg-source: info: extracting petsc in /<<BUILDDIR>>/petsc-3.8.4+dfsg1
dpkg-source: info: unpacking petsc_3.8.4+dfsg1.orig.tar.gz
dpkg-source: info: unpacking petsc_3.8.4+dfsg1-1.debian.tar.xz
dpkg-source: info: applying build-debug-nowarn.patch
dpkg-source: info: applying build-no-rpath.patch
dpkg-source: info: applying docs.patch
dpkg-source: info: applying lib-versions.patch
dpkg-source: info: applying sprng-2.patch
dpkg-source: info: applying clean-no-double-colon.patch
dpkg-source: info: applying hypre.patch
dpkg-source: info: applying nocleanup.patch
dpkg-source: info: applying python_header
dpkg-source: info: applying soname_extension
dpkg-source: info: applying hurd.patch
dpkg-source: info: applying test_mpi_conditional_bug816101
dpkg-source: info: applying superlu-dist_no-parmetis.patch
dpkg-source: info: applying petscmpiexec_posix_sh.patch
dpkg-source: info: applying install_fixDir_petscconf.h_b1eb7ee26db_deb554b.patch
dpkg-source: info: applying make_parallel_f88a919.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.8.4+dfsg1-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-7173da5f-b9b6-4c9a-82ba-4916ccf161e0
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package petsc
dpkg-buildpackage: info: source version 3.8.4+dfsg1-1+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build petsc-3.8.4+dfsg1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
if [ -d arm-linux-gnueabihf-real-debug ]; then \
dh_auto_clean -plibpetsc-real3.8-dbg -ppetsc3.8-doc -- \
PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real-debug; \
fi
if [ -d arm-linux-gnueabihf-real ]; then \
dh_auto_clean -plibpetsc-real3.8-dev -- \
PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real; \
fi
if [ -d arm-linux-gnueabihf-complex ]; then \
dh_auto_clean -plibpetsc-complex3.8-dev -- \
PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-complex; \
fi
if [ -d arm-linux-gnueabihf-complex-debug ]; then \
dh_auto_clean -plibpetsc-complex3.8-dbg -- \
PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-complex-debug; \
fi
make[1]: Leaving directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
===================== libpetsc-real3.8-dbg =====================
if dh_auto_configure -plibpetsc-real3.8-dbg -ppetsc3.8-doc -- \
--with-debugging=1 \
--shared-library-extension=_real \
--with-clanguage=C++ \
--with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=[] --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=[] --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS="-Wl,--no-as-needed" \
--with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib="-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities" \
--prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-real-debug \
--PETSC_ARCH=arm-linux-gnueabihf-real-debug \
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" \
FCFLAGS="-g -O2 -fstack-protector-strong -fPIC" FFLAGS="-g -O2 -fstack-protector-strong -fPIC" \
CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS="w"; then \
: ; \
else \
cat configure.log; \
false; \
fi
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-debugging=1 --shared-library-extension=_real --with-clanguage=C\+\+ --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=\[\] "--with-mumps-lib=-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse "--with-suitesparse-lib=-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch "--with-ptscotch-lib=-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=\[\] "--with-fftw-lib=-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi "--with-hdf5-lib=-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre "--with-hypre-lib=-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities" --prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-real-debug --PETSC_ARCH=arm-linux-gnueabihf-real-debug "CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "FCFLAGS=-g -O2 -fstack-protector-strong -fPIC" "FFLAGS=-g -O2 -fstack-protector-strong -fPIC" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -fPIC" MAKEFLAGS=w
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/framework.py:830)
TESTING: configureGit from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureMercurial from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:35)
TESTING: configureDebuggers from config.utilities.debuggers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/debuggers.py:22)
TESTING: configureCLanguage from PETSc.options.languages(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/languages.py:27)
===============================================================================
WARNING -with-clanguage=C++ is a developer feature and is *not* required for regular usage of PETSc either from C or C++
===============================================================================
TESTING: configureDirectories from PETSc.options.petscdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscclone.py:20)
TESTING: configureArchitecture from PETSc.options.arch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/arch.py:36)
TESTING: setInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:35)
TESTING: saveReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:75)
TESTING: cleanInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:68)
TESTING: configureInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:52)
TESTING: restoreReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:88)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:22)
TESTING: printEnvVariables from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1593)
TESTING: resetEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1600)
TESTING: checkEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1630)
TESTING: checkMPICompilerOverride from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1565)
TESTING: requireMpiLdPath from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1584)
TESTING: checkVendor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:426)
TESTING: checkInitialFlags from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:436)
TESTING: checkCCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:568)
TESTING: checkCPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:601)
TESTING: checkCUDACompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:642)
TESTING: checkCUDAPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:682)
TESTING: checkCxxCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:794)
TESTING: checkCxxPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:832)
TESTING: checkFortranCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:949)
TESTING: checkFortranComments from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:970)
TESTING: checkLargeFileIO from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1087)
TESTING: checkArchiver from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1186)
TESTING: checkSharedLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1300)
TESTING: checkPIC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1046)
TESTING: checkSharedLinkerPaths from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1394)
TESTING: checkLibC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1408)
TESTING: checkDynamicLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1457)
TESTING: output from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1509)
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:41)
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:57)
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:109)
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:115)
TESTING: configureIndexSize from PETSc.options.indexTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/indexTypes.py:31)
TESTING: configureCompilerFlags from config.compilerFlags(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilerFlags.py:72)
TESTING: configureDebugging from PETSc.options.debugging(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/debugging.py:25)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCFormatting from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:326)
TESTING: checkCStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:108)
TESTING: checkDynamicLoadFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:337)
TESTING: checkCLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:171)
TESTING: checkDependencyGenerationFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1401)
TESTING: checkC99Flag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1447)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCxxNamespace from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:377)
TESTING: checkCxxOptionalExtensions from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:350)
TESTING: checkCxxStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:122)
TESTING: checkCxxLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:435)
TESTING: checkCxx11 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:392)
TESTING: checkFortranTypeSizes from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:602)
TESTING: checkFortranNameMangling from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:661)
TESTING: checkFortranNameManglingDouble from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:698)
TESTING: checkFortranPreprocessor from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:708)
TESTING: checkFortranDefineCompilerOption from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:732)
TESTING: checkFortranLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:752)
TESTING: checkFortranLinkingCxx from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1107)
TESTING: checkFortran90 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1142)
TESTING: checkFortran90FreeForm from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1155)
TESTING: checkFortran2003 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1169)
TESTING: checkFortran90Array from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1203)
TESTING: checkFortranModuleInclude from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1290)
TESTING: checkFortranModuleOutput from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1356)
TESTING: setupFrameworkCompilers from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1515)
TESTING: configureClosure from config.utilities.closure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/closure.py:18)
TESTING: configureFortranCPP from PETSc.options.fortranCPP(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/fortranCPP.py:21)
TESTING: checkStdC from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:105)
TESTING: checkStat from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:138)
TESTING: checkSysWait from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:173)
TESTING: checkTime from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:195)
TESTING: checkMath from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:203)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: checkRecursiveMacros from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:218)
TESTING: configureCacheDetails from config.utilities.cacheDetails(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/cacheDetails.py:78)
TESTING: check_siginfo_t from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:46)
TESTING: check__int64 from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:52)
TESTING: checkSizeTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:58)
TESTING: checkFileTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:68)
TESTING: checkIntegerTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:63)
TESTING: checkPID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:74)
TESTING: checkUID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:78)
TESTING: checkSignal from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:85)
TESTING: checkC99Complex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:106)
TESTING: checkCxxComplex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:117)
TESTING: checkFortranKind from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:138)
TESTING: checkConst from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:150)
TESTING: checkEndian from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:206)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkBitsPerByte from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:310)
TESTING: checkVisibility from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:356)
TESTING: configureMemAlign from PETSc.options.memAlign(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/memAlign.py:30)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkMath from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:263)
TESTING: checkMathErf from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:282)
TESTING: checkMathTgamma from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:291)
TESTING: checkMathFenv from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:300)
TESTING: checkMathLog2 from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:308)
TESTING: checkRealtime from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:317)
TESTING: checkDynamic from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:333)
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:37)
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:91)
TESTING: configureCPURelax from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:17)
TESTING: configureMemoryBarriers from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:36)
TESTING: checkMemcmp from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:110)
TESTING: checkSysinfo from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:135)
TESTING: checkVPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:158)
TESTING: checkVFPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:165)
TESTING: checkVSNPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:172)
TESTING: checkNanosleep from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:206)
TESTING: checkSignalHandlerType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:182)
TESTING: checkFreeReturnType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:192)
TESTING: checkVariableArgumentLists from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:198)
TESTING: checkClassify from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:89)
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
TESTING: configureFPTrap from config.utilities.FPTrap(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/FPTrap.py:27)
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/featureTestMacros.py:13)
TESTING: configureMissingDefines from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:57)
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:67)
TESTING: configureMissingFunctions from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:73)
TESTING: configureMissingSignals from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:93)
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:110)
TESTING: configureMissingSrandPrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:135)
TESTING: configureScalarType from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:37)
TESTING: configurePrecision from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:77)
TESTING: configureMkdir from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:23)
TESTING: configureAutoreconf from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:45)
TESTING: configurePrograms from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:72)
TESTING: configureMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:82)
TESTING: configureCheckGNUMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:119)
TESTING: configureMakeNP from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:157)
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MPICH(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:492)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: configureConversion from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:217)
TESTING: configureMPI2 from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:178)
TESTING: configureTypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:237)
TESTING: configureMPITypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:249)
TESTING: configureMissingPrototypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:322)
TESTING: SGIMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:341)
TESTING: CxxMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:351)
TESTING: FortranMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:369)
TESTING: configureIO from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:394)
TESTING: findMPIInc from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:466)
TESTING: checkMPICHorOpenMPI from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:431)
TESTING: checkSharedLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:128)
TESTING: configureMPIEXEC from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:141)
TESTING: alternateConfigureLibrary from config.packages.sprng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Mathematica(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: locateC2html from config.packages.c2html(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/c2html.py:32)
TESTING: alternateConfigureLibrary from config.packages.mpe(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Random123(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.giflib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.gmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mpfr(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.revolve(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureLibrary from config.packages.valgrind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
===============================================================================
It appears you do not have valgrind installed on your system.
We HIGHLY recommend you install it from www.valgrind.org
Or install valgrind-devel or equivalent using your package manager.
Then rerun ./configure
===============================================================================
TESTING: alternateConfigureLibrary from config.packages.memkind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ctetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengles(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.yaml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Matlab(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PARTY(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ssl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.boost(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.hwloc(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pami(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Numpy(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/petsc4py.py:121)
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mpi4py.py:71)
TESTING: checkDependencies from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/pthread.py:19)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.szlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.zlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.glut(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opencl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.viennacl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cusp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureVecCUDA from config.utilities.veccuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/veccuda.py:15)
TESTING: locateCMake from config.packages.cmake(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/cmake.py:36)
TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.eigen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.googletest(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.saws(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tchem(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libpng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Triangle(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Chaco(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.metis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pragmatic(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.parmetis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Zoltan(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/hdf5.py:54)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.cgns(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ascem-io(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pflotran(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.alquimia(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.netcdf(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.exodusii(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.med(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openblas(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:331)
TESTING: checkLib from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:102)
TESTING: check64BitBLASIndices from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:517)
TESTING: checkESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:410)
TESTING: checkPESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:450)
TESTING: checkMKL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:418)
TESTING: checkMissing from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:475)
TESTING: checklsame from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:490)
TESTING: checksdotreturnsdouble from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:553)
TESTING: checkSharedLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.pARMS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.spai(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mkl_sparse.py:41)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.MOAB(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PaStiX(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.sundials(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.SuperLU_MT(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.p4est(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/hypre.py:88)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.strumpack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.elemental(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRegression from PETSc.Regression(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Regression.py:36)
TESTING: alternateConfigureLibrary from config.packages.Chombo(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Trilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mstk(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.amanzi(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRTLDDefault from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:868)
TESTING: configurePrefetch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:675)
TESTING: configureUnused from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:736)
TESTING: configureDeprecated from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:754)
TESTING: configureIsatty from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:748)
TESTING: configureExpect from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:821)
TESTING: configureAlign from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:774)
TESTING: configureFunctionName from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:828)
TESTING: configureIntptrt from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:846)
TESTING: configureSolaris from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:873)
TESTING: configureLinux from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:886)
TESTING: configureWin32 from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:892)
TESTING: configureCygwinBrokenPipe from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:965)
TESTING: configureDefaultArch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:981)
TESTING: configureScript from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:998)
TESTING: configureInstall from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1035)
TESTING: configureGCOV from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1047)
TESTING: configureFortranFlush from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1052)
TESTING: configureAtoll from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:731)
TESTING: configureViewFromOptions from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1059)
Compilers:
C Compiler: mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
C++ Compiler: mpicxx -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Fortran Compiler: mpif90 -g -O2 -fstack-protector-strong -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Linkers:
Shared linker: mpicxx -Wl,-z,relro -fPIC -shared
Dynamic linker: mpicxx -Wl,-z,relro -fPIC -shared
make:
BLAS/LAPACK: -llapack -lblas
MPI:
Arch:
hdf5:
Includes: -I/usr/include/hdf5/openmpi
Library: -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi
pthread:
MUMPS:
Library: -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord
PTScotch:
Includes: -I/usr/include/scotch
Library: -lptesmumps -lptscotch -lptscotcherr
scalapack:
Library: -lscalapack-openmpi
SuperLU:
Includes: -I/usr/include/superlu
Library: -lsuperlu
SuperLU_DIST:
Includes: -I/usr/include/superlu-dist
Library: -lsuperlu_dist
hypre:
Includes: -I/usr/include/hypre
Library: -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities
SuiteSparse:
Includes: -I/usr/include/suitesparse
Library: -lumfpack -lamd -lcholmod -lklu
fftw:
Library: -lfftw3 -lfftw3_mpi
PETSc:
PETSC_ARCH: arm-linux-gnueabihf-real-debug
PETSC_DIR: /<<BUILDDIR>>/petsc-3.8.4+dfsg1
Scalar type: real
Precision: double
Clanguage: Cxx
Integer size: 32
shared libraries: enabled
shared library extension: _real
Memory alignment: 16
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (gnumake build):
make PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real-debug all
xxx=========================================================================xxx
===================== libpetsc-real3.8-dev =====================
if dh_auto_configure -plibpetsc-real3.8-dev -- \
--with-debugging=0 \
--shared-library-extension=_real \
--with-clanguage=C++ \
--with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=[] --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=[] --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS="-Wl,--no-as-needed" \
--with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib="-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities" \
--prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-real \
--PETSC_ARCH=arm-linux-gnueabihf-real \
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" \
FCFLAGS="-g -O2 -fstack-protector-strong -fPIC" FFLAGS="-g -O2 -fstack-protector-strong -fPIC" \
CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS="w"; then \
: ; \
else \
cat configure.log; \
false; \
fi
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-debugging=0 --shared-library-extension=_real --with-clanguage=C\+\+ --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=\[\] "--with-mumps-lib=-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse "--with-suitesparse-lib=-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch "--with-ptscotch-lib=-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=\[\] "--with-fftw-lib=-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi "--with-hdf5-lib=-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre "--with-hypre-lib=-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities" --prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real "CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "FCFLAGS=-g -O2 -fstack-protector-strong -fPIC" "FFLAGS=-g -O2 -fstack-protector-strong -fPIC" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -fPIC" MAKEFLAGS=w
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/framework.py:830)
TESTING: configureGit from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureMercurial from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:35)
TESTING: configureDebuggers from config.utilities.debuggers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/debuggers.py:22)
TESTING: configureCLanguage from PETSc.options.languages(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/languages.py:27)
===============================================================================
WARNING -with-clanguage=C++ is a developer feature and is *not* required for regular usage of PETSc either from C or C++
===============================================================================
TESTING: configureDirectories from PETSc.options.petscdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscclone.py:20)
TESTING: configureArchitecture from PETSc.options.arch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/arch.py:36)
TESTING: setInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:35)
TESTING: saveReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:75)
TESTING: cleanInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:68)
TESTING: configureInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:52)
TESTING: restoreReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:88)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:22)
TESTING: printEnvVariables from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1593)
TESTING: resetEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1600)
TESTING: checkEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1630)
TESTING: checkMPICompilerOverride from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1565)
TESTING: requireMpiLdPath from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1584)
TESTING: checkVendor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:426)
TESTING: checkInitialFlags from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:436)
TESTING: checkCCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:568)
TESTING: checkCPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:601)
TESTING: checkCUDACompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:642)
TESTING: checkCUDAPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:682)
TESTING: checkCxxCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:794)
TESTING: checkCxxPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:832)
TESTING: checkFortranCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:949)
TESTING: checkFortranComments from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:970)
TESTING: checkLargeFileIO from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1087)
TESTING: checkArchiver from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1186)
TESTING: checkSharedLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1300)
TESTING: checkPIC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1046)
TESTING: checkSharedLinkerPaths from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1394)
TESTING: checkLibC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1408)
TESTING: checkDynamicLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1457)
TESTING: output from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1509)
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:41)
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:57)
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:109)
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:115)
TESTING: configureIndexSize from PETSc.options.indexTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/indexTypes.py:31)
TESTING: configureCompilerFlags from config.compilerFlags(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilerFlags.py:72)
TESTING: configureDebugging from PETSc.options.debugging(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/debugging.py:25)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCFormatting from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:326)
TESTING: checkCStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:108)
TESTING: checkDynamicLoadFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:337)
TESTING: checkCLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:171)
TESTING: checkDependencyGenerationFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1401)
TESTING: checkC99Flag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1447)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCxxNamespace from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:377)
TESTING: checkCxxOptionalExtensions from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:350)
TESTING: checkCxxStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:122)
TESTING: checkCxxLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:435)
TESTING: checkCxx11 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:392)
TESTING: checkFortranTypeSizes from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:602)
TESTING: checkFortranNameMangling from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:661)
TESTING: checkFortranNameManglingDouble from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:698)
TESTING: checkFortranPreprocessor from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:708)
TESTING: checkFortranDefineCompilerOption from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:732)
TESTING: checkFortranLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:752)
TESTING: checkFortranLinkingCxx from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1107)
TESTING: checkFortran90 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1142)
TESTING: checkFortran90FreeForm from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1155)
TESTING: checkFortran2003 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1169)
TESTING: checkFortran90Array from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1203)
TESTING: checkFortranModuleInclude from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1290)
TESTING: checkFortranModuleOutput from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1356)
TESTING: setupFrameworkCompilers from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1515)
TESTING: configureClosure from config.utilities.closure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/closure.py:18)
TESTING: configureFortranCPP from PETSc.options.fortranCPP(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/fortranCPP.py:21)
TESTING: checkStdC from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:105)
TESTING: checkStat from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:138)
TESTING: checkSysWait from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:173)
TESTING: checkTime from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:195)
TESTING: checkMath from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:203)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: checkRecursiveMacros from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:218)
TESTING: configureCacheDetails from config.utilities.cacheDetails(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/cacheDetails.py:78)
TESTING: check_siginfo_t from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:46)
TESTING: check__int64 from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:52)
TESTING: checkSizeTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:58)
TESTING: checkFileTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:68)
TESTING: checkIntegerTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:63)
TESTING: checkPID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:74)
TESTING: checkUID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:78)
TESTING: checkSignal from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:85)
TESTING: checkC99Complex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:106)
TESTING: checkCxxComplex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:117)
TESTING: checkFortranKind from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:138)
TESTING: checkConst from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:150)
TESTING: checkEndian from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:206)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkBitsPerByte from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:310)
TESTING: checkVisibility from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:356)
TESTING: configureMemAlign from PETSc.options.memAlign(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/memAlign.py:30)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkMath from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:263)
TESTING: checkMathErf from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:282)
TESTING: checkMathTgamma from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:291)
TESTING: checkMathFenv from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:300)
TESTING: checkMathLog2 from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:308)
TESTING: checkRealtime from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:317)
TESTING: checkDynamic from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:333)
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:37)
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:91)
TESTING: configureCPURelax from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:17)
TESTING: configureMemoryBarriers from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:36)
TESTING: checkMemcmp from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:110)
TESTING: checkSysinfo from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:135)
TESTING: checkVPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:158)
TESTING: checkVFPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:165)
TESTING: checkVSNPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:172)
TESTING: checkNanosleep from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:206)
TESTING: checkSignalHandlerType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:182)
TESTING: checkFreeReturnType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:192)
TESTING: checkVariableArgumentLists from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:198)
TESTING: checkClassify from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:89)
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
TESTING: configureFPTrap from config.utilities.FPTrap(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/FPTrap.py:27)
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/featureTestMacros.py:13)
TESTING: configureMissingDefines from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:57)
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:67)
TESTING: configureMissingFunctions from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:73)
TESTING: configureMissingSignals from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:93)
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:110)
TESTING: configureMissingSrandPrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:135)
TESTING: configureScalarType from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:37)
TESTING: configurePrecision from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:77)
TESTING: configureMkdir from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:23)
TESTING: configureAutoreconf from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:45)
TESTING: configurePrograms from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:72)
TESTING: configureMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:82)
TESTING: configureCheckGNUMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:119)
TESTING: configureMakeNP from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:157)
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MPICH(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:492)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: configureConversion from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:217)
TESTING: configureMPI2 from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:178)
TESTING: configureTypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:237)
TESTING: configureMPITypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:249)
TESTING: configureMissingPrototypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:322)
TESTING: SGIMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:341)
TESTING: CxxMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:351)
TESTING: FortranMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:369)
TESTING: configureIO from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:394)
TESTING: findMPIInc from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:466)
TESTING: checkMPICHorOpenMPI from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:431)
TESTING: checkSharedLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:128)
TESTING: configureMPIEXEC from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:141)
TESTING: alternateConfigureLibrary from config.packages.sprng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Mathematica(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: locateC2html from config.packages.c2html(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/c2html.py:32)
TESTING: alternateConfigureLibrary from config.packages.mpe(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Random123(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.giflib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.gmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mpfr(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.revolve(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureLibrary from config.packages.valgrind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
===============================================================================
It appears you do not have valgrind installed on your system.
We HIGHLY recommend you install it from www.valgrind.org
Or install valgrind-devel or equivalent using your package manager.
Then rerun ./configure
===============================================================================
TESTING: alternateConfigureLibrary from config.packages.memkind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ctetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengles(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.yaml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Matlab(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PARTY(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ssl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.boost(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.hwloc(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pami(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Numpy(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/petsc4py.py:121)
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mpi4py.py:71)
TESTING: checkDependencies from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/pthread.py:19)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.szlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.zlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.glut(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opencl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.viennacl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cusp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureVecCUDA from config.utilities.veccuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/veccuda.py:15)
TESTING: locateCMake from config.packages.cmake(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/cmake.py:36)
TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.eigen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.googletest(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.saws(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tchem(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libpng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Triangle(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Chaco(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.metis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pragmatic(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.parmetis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Zoltan(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/hdf5.py:54)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.cgns(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ascem-io(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pflotran(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.alquimia(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.netcdf(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.exodusii(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.med(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openblas(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:331)
TESTING: checkLib from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:102)
TESTING: check64BitBLASIndices from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:517)
TESTING: checkESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:410)
TESTING: checkPESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:450)
TESTING: checkMKL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:418)
TESTING: checkMissing from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:475)
TESTING: checklsame from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:490)
TESTING: checksdotreturnsdouble from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:553)
TESTING: checkSharedLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.pARMS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.spai(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mkl_sparse.py:41)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.MOAB(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PaStiX(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.sundials(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.SuperLU_MT(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.p4est(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/hypre.py:88)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.strumpack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.elemental(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRegression from PETSc.Regression(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Regression.py:36)
TESTING: alternateConfigureLibrary from config.packages.Chombo(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Trilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mstk(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.amanzi(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRTLDDefault from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:868)
TESTING: configurePrefetch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:675)
TESTING: configureUnused from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:736)
TESTING: configureDeprecated from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:754)
TESTING: configureIsatty from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:748)
TESTING: configureExpect from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:821)
TESTING: configureAlign from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:774)
TESTING: configureFunctionName from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:828)
TESTING: configureIntptrt from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:846)
TESTING: configureSolaris from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:873)
TESTING: configureLinux from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:886)
TESTING: configureWin32 from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:892)
TESTING: configureCygwinBrokenPipe from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:965)
TESTING: configureDefaultArch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:981)
TESTING: configureScript from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:998)
TESTING: configureInstall from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1035)
TESTING: configureGCOV from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1047)
TESTING: configureFortranFlush from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1052)
TESTING: configureAtoll from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:731)
TESTING: configureViewFromOptions from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1059)
Compilers:
C Compiler: mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
C++ Compiler: mpicxx -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Fortran Compiler: mpif90 -g -O2 -fstack-protector-strong -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Linkers:
Shared linker: mpicxx -Wl,-z,relro -fPIC -shared
Dynamic linker: mpicxx -Wl,-z,relro -fPIC -shared
make:
BLAS/LAPACK: -llapack -lblas
MPI:
Arch:
hdf5:
Includes: -I/usr/include/hdf5/openmpi
Library: -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi
pthread:
MUMPS:
Library: -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord
PTScotch:
Includes: -I/usr/include/scotch
Library: -lptesmumps -lptscotch -lptscotcherr
scalapack:
Library: -lscalapack-openmpi
SuperLU:
Includes: -I/usr/include/superlu
Library: -lsuperlu
SuperLU_DIST:
Includes: -I/usr/include/superlu-dist
Library: -lsuperlu_dist
hypre:
Includes: -I/usr/include/hypre
Library: -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities
SuiteSparse:
Includes: -I/usr/include/suitesparse
Library: -lumfpack -lamd -lcholmod -lklu
fftw:
Library: -lfftw3 -lfftw3_mpi
PETSc:
PETSC_ARCH: arm-linux-gnueabihf-real
PETSC_DIR: /<<BUILDDIR>>/petsc-3.8.4+dfsg1
Scalar type: real
Precision: double
Clanguage: Cxx
Integer size: 32
shared libraries: enabled
shared library extension: _real
Memory alignment: 16
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (gnumake build):
make PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real all
xxx=========================================================================xxx
===================== libpetsc-complex3.8-dev =====================
if dh_auto_configure -plibpetsc-complex3.8-dev -- \
--with-debugging=0 \
--with-scalar-type=complex --shared-library-extension=_complex \
--with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=[] --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=[] --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS="-Wl,--no-as-needed" \
--prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-complex \
--PETSC_ARCH=arm-linux-gnueabihf-complex \
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" \
FCFLAGS="-g -O2 -fstack-protector-strong -fPIC" FFLAGS="-g -O2 -fstack-protector-strong -fPIC" \
CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS="w"; then \
: ; \
else \
cat configure.log; \
false; \
fi
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-debugging=0 --with-scalar-type=complex --shared-library-extension=_complex --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=\[\] "--with-mumps-lib=-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse "--with-suitesparse-lib=-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch "--with-ptscotch-lib=-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=\[\] "--with-fftw-lib=-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi "--with-hdf5-lib=-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-complex --PETSC_ARCH=arm-linux-gnueabihf-complex "CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "FCFLAGS=-g -O2 -fstack-protector-strong -fPIC" "FFLAGS=-g -O2 -fstack-protector-strong -fPIC" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -fPIC" MAKEFLAGS=w
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/framework.py:830)
TESTING: configureGit from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureMercurial from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:35)
TESTING: configureDebuggers from config.utilities.debuggers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/debuggers.py:22)
TESTING: configureCLanguage from PETSc.options.languages(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/languages.py:27)
TESTING: configureDirectories from PETSc.options.petscdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscclone.py:20)
TESTING: configureArchitecture from PETSc.options.arch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/arch.py:36)
TESTING: setInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:35)
TESTING: saveReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:75)
TESTING: cleanInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:68)
TESTING: configureInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:52)
TESTING: restoreReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:88)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:22)
TESTING: printEnvVariables from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1593)
TESTING: resetEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1600)
TESTING: checkEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1630)
TESTING: checkMPICompilerOverride from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1565)
TESTING: requireMpiLdPath from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1584)
TESTING: checkVendor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:426)
TESTING: checkInitialFlags from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:436)
TESTING: checkCCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:568)
TESTING: checkCPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:601)
TESTING: checkCUDACompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:642)
TESTING: checkCUDAPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:682)
TESTING: checkCxxCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:794)
TESTING: checkCxxPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:832)
TESTING: checkFortranCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:949)
TESTING: checkFortranComments from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:970)
TESTING: checkLargeFileIO from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1087)
TESTING: checkArchiver from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1186)
TESTING: checkSharedLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1300)
TESTING: checkPIC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1046)
TESTING: checkSharedLinkerPaths from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1394)
TESTING: checkLibC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1408)
TESTING: checkDynamicLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1457)
TESTING: output from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1509)
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:41)
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:57)
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:109)
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:115)
TESTING: configureIndexSize from PETSc.options.indexTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/indexTypes.py:31)
TESTING: configureCompilerFlags from config.compilerFlags(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilerFlags.py:72)
TESTING: configureDebugging from PETSc.options.debugging(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/debugging.py:25)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCFormatting from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:326)
TESTING: checkCStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:108)
TESTING: checkDynamicLoadFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:337)
TESTING: checkCLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:171)
TESTING: checkDependencyGenerationFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1401)
TESTING: checkC99Flag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1447)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCxxNamespace from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:377)
TESTING: checkCxxOptionalExtensions from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:350)
TESTING: checkCxxStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:122)
TESTING: checkCxxLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:435)
TESTING: checkCxx11 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:392)
TESTING: checkFortranTypeSizes from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:602)
TESTING: checkFortranNameMangling from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:661)
TESTING: checkFortranNameManglingDouble from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:698)
TESTING: checkFortranPreprocessor from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:708)
TESTING: checkFortranDefineCompilerOption from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:732)
TESTING: checkFortranLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:752)
TESTING: checkFortranLinkingCxx from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1107)
TESTING: checkFortran90 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1142)
TESTING: checkFortran90FreeForm from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1155)
TESTING: checkFortran2003 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1169)
TESTING: checkFortran90Array from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1203)
TESTING: checkFortranModuleInclude from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1290)
TESTING: checkFortranModuleOutput from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1356)
TESTING: setupFrameworkCompilers from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1515)
TESTING: configureClosure from config.utilities.closure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/closure.py:18)
TESTING: configureFortranCPP from PETSc.options.fortranCPP(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/fortranCPP.py:21)
TESTING: checkStdC from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:105)
TESTING: checkStat from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:138)
TESTING: checkSysWait from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:173)
TESTING: checkTime from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:195)
TESTING: checkMath from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:203)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: checkRecursiveMacros from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:218)
TESTING: configureCacheDetails from config.utilities.cacheDetails(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/cacheDetails.py:78)
TESTING: check_siginfo_t from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:46)
TESTING: check__int64 from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:52)
TESTING: checkSizeTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:58)
TESTING: checkFileTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:68)
TESTING: checkIntegerTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:63)
TESTING: checkPID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:74)
TESTING: checkUID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:78)
TESTING: checkSignal from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:85)
TESTING: checkC99Complex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:106)
TESTING: checkCxxComplex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:117)
TESTING: checkFortranKind from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:138)
TESTING: checkConst from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:150)
TESTING: checkEndian from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:206)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkBitsPerByte from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:310)
TESTING: checkVisibility from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:356)
TESTING: configureMemAlign from PETSc.options.memAlign(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/memAlign.py:30)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkMath from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:263)
TESTING: checkMathErf from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:282)
TESTING: checkMathTgamma from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:291)
TESTING: checkMathFenv from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:300)
TESTING: checkMathLog2 from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:308)
TESTING: checkRealtime from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:317)
TESTING: checkDynamic from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:333)
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:37)
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:91)
TESTING: configureCPURelax from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:17)
TESTING: configureMemoryBarriers from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:36)
TESTING: checkMemcmp from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:110)
TESTING: checkSysinfo from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:135)
TESTING: checkVPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:158)
TESTING: checkVFPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:165)
TESTING: checkVSNPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:172)
TESTING: checkNanosleep from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:206)
TESTING: checkSignalHandlerType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:182)
TESTING: checkFreeReturnType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:192)
TESTING: checkVariableArgumentLists from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:198)
TESTING: checkClassify from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:89)
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
TESTING: configureFPTrap from config.utilities.FPTrap(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/FPTrap.py:27)
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/featureTestMacros.py:13)
TESTING: configureMissingDefines from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:57)
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:67)
TESTING: configureMissingFunctions from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:73)
TESTING: configureMissingSignals from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:93)
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:110)
TESTING: configureMissingSrandPrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:135)
TESTING: configureScalarType from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:37)
TESTING: configurePrecision from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:77)
TESTING: configureMkdir from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:23)
TESTING: configureAutoreconf from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:45)
TESTING: configurePrograms from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:72)
TESTING: configureMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:82)
TESTING: configureCheckGNUMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:119)
TESTING: configureMakeNP from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:157)
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MPICH(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:492)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: configureConversion from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:217)
TESTING: configureMPI2 from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:178)
TESTING: configureTypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:237)
TESTING: configureMPITypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:249)
TESTING: configureMissingPrototypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:322)
TESTING: SGIMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:341)
TESTING: CxxMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:351)
TESTING: FortranMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:369)
TESTING: configureIO from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:394)
TESTING: findMPIInc from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:466)
TESTING: checkMPICHorOpenMPI from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:431)
TESTING: checkSharedLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:128)
TESTING: configureMPIEXEC from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:141)
TESTING: alternateConfigureLibrary from config.packages.sprng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Mathematica(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: locateC2html from config.packages.c2html(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/c2html.py:32)
TESTING: alternateConfigureLibrary from config.packages.mpe(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Random123(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.giflib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.gmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mpfr(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.revolve(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureLibrary from config.packages.valgrind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
===============================================================================
It appears you do not have valgrind installed on your system.
We HIGHLY recommend you install it from www.valgrind.org
Or install valgrind-devel or equivalent using your package manager.
Then rerun ./configure
===============================================================================
TESTING: alternateConfigureLibrary from config.packages.memkind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ctetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengles(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.yaml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Matlab(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PARTY(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ssl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.boost(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.hwloc(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pami(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Numpy(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/petsc4py.py:121)
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mpi4py.py:71)
TESTING: checkDependencies from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/pthread.py:19)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.szlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.zlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.glut(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opencl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.viennacl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cusp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureVecCUDA from config.utilities.veccuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/veccuda.py:15)
TESTING: locateCMake from config.packages.cmake(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/cmake.py:36)
TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.eigen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.googletest(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.saws(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tchem(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libpng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Triangle(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Chaco(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.metis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pragmatic(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.parmetis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Zoltan(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/hdf5.py:54)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.cgns(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ascem-io(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pflotran(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.alquimia(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.netcdf(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.exodusii(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.med(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openblas(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:331)
TESTING: checkLib from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:102)
TESTING: check64BitBLASIndices from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:517)
TESTING: checkESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:410)
TESTING: checkPESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:450)
TESTING: checkMKL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:418)
TESTING: checkMissing from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:475)
TESTING: checklsame from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:490)
TESTING: checksdotreturnsdouble from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:553)
TESTING: checkSharedLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.pARMS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.spai(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mkl_sparse.py:41)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.MOAB(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PaStiX(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.sundials(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.SuperLU_MT(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.p4est(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.strumpack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.elemental(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRegression from PETSc.Regression(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Regression.py:36)
TESTING: alternateConfigureLibrary from config.packages.Chombo(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Trilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mstk(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.amanzi(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRTLDDefault from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:868)
TESTING: configurePrefetch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:675)
TESTING: configureUnused from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:736)
TESTING: configureDeprecated from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:754)
TESTING: configureIsatty from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:748)
TESTING: configureExpect from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:821)
TESTING: configureAlign from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:774)
TESTING: configureFunctionName from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:828)
TESTING: configureIntptrt from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:846)
TESTING: configureSolaris from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:873)
TESTING: configureLinux from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:886)
TESTING: configureWin32 from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:892)
TESTING: configureCygwinBrokenPipe from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:965)
TESTING: configureDefaultArch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:981)
TESTING: configureScript from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:998)
TESTING: configureInstall from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1035)
TESTING: configureGCOV from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1047)
TESTING: configureFortranFlush from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1052)
TESTING: configureAtoll from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:731)
TESTING: configureViewFromOptions from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1059)
Compilers:
C Compiler: mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
C++ Compiler: mpicxx -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Fortran Compiler: mpif90 -g -O2 -fstack-protector-strong -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Linkers:
Shared linker: mpicc -Wl,-z,relro -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC
Dynamic linker: mpicc -Wl,-z,relro -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC
make:
BLAS/LAPACK: -llapack -lblas
MPI:
Arch:
hdf5:
Includes: -I/usr/include/hdf5/openmpi
Library: -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi
pthread:
MUMPS:
Library: -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord
PTScotch:
Includes: -I/usr/include/scotch
Library: -lptesmumps -lptscotch -lptscotcherr
scalapack:
Library: -lscalapack-openmpi
SuperLU:
Includes: -I/usr/include/superlu
Library: -lsuperlu
SuperLU_DIST:
Includes: -I/usr/include/superlu-dist
Library: -lsuperlu_dist
SuiteSparse:
Includes: -I/usr/include/suitesparse
Library: -lumfpack -lamd -lcholmod -lklu
fftw:
Library: -lfftw3 -lfftw3_mpi
PETSc:
PETSC_ARCH: arm-linux-gnueabihf-complex
PETSC_DIR: /<<BUILDDIR>>/petsc-3.8.4+dfsg1
Scalar type: complex
Precision: double
Clanguage: C
Integer size: 32
shared libraries: enabled
shared library extension: _complex
Memory alignment: 16
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (gnumake build):
make PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-complex all
xxx=========================================================================xxx
===================== libpetsc-complex3.8-dbg =====================
if dh_auto_configure -plibpetsc-complex3.8-dbg -- \
--with-debugging=1 \
--with-scalar-type=complex --shared-library-extension=_complex \
--with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=[] --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=[] --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS="-Wl,--no-as-needed" \
--prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-complex-debug \
--PETSC_ARCH=arm-linux-gnueabihf-complex-debug \
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" \
FCFLAGS="-g -O2 -fstack-protector-strong -fPIC" FFLAGS="-g -O2 -fstack-protector-strong -fPIC" \
CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS="w"; then \
: ; \
else \
cat configure.log; \
false; \
fi
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-debugging=1 --with-scalar-type=complex --shared-library-extension=_complex --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include=\[\] "--with-mumps-lib=-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse "--with-suitesparse-lib=-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch "--with-ptscotch-lib=-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include=\[\] "--with-fftw-lib=-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi "--with-hdf5-lib=-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-complex-debug --PETSC_ARCH=arm-linux-gnueabihf-complex-debug "CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" "FCFLAGS=-g -O2 -fstack-protector-strong -fPIC" "FFLAGS=-g -O2 -fstack-protector-strong -fPIC" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -fPIC" MAKEFLAGS=w
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/framework.py:830)
TESTING: configureGit from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureMercurial from config.sourceControl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/sourceControl.py:35)
TESTING: configureDebuggers from config.utilities.debuggers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/debuggers.py:22)
TESTING: configureCLanguage from PETSc.options.languages(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/languages.py:27)
TESTING: configureDirectories from PETSc.options.petscdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/petscclone.py:20)
TESTING: configureArchitecture from PETSc.options.arch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/arch.py:36)
TESTING: setInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:35)
TESTING: saveReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:75)
TESTING: cleanInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:68)
TESTING: configureInstallDir from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:52)
TESTING: restoreReconfigure from PETSc.options.installDir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/installDir.py:88)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/externalpackagesdir.py:22)
TESTING: printEnvVariables from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1593)
TESTING: resetEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1600)
TESTING: checkEnvCompilers from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1630)
TESTING: checkMPICompilerOverride from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1565)
TESTING: requireMpiLdPath from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1584)
TESTING: checkVendor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:426)
TESTING: checkInitialFlags from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:436)
TESTING: checkCCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:568)
TESTING: checkCPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:601)
TESTING: checkCUDACompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:642)
TESTING: checkCUDAPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:682)
TESTING: checkCxxCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:794)
TESTING: checkCxxPreprocessor from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:832)
TESTING: checkFortranCompiler from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:949)
TESTING: checkFortranComments from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:970)
TESTING: checkLargeFileIO from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1087)
TESTING: checkArchiver from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1186)
TESTING: checkSharedLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1300)
TESTING: checkPIC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1046)
TESTING: checkSharedLinkerPaths from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1394)
TESTING: checkLibC from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1408)
TESTING: checkDynamicLinker from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1457)
TESTING: output from config.setCompilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/setCompilers.py:1509)
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:41)
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:57)
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:109)
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/sharedLibraries.py:115)
TESTING: configureIndexSize from PETSc.options.indexTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/indexTypes.py:31)
TESTING: configureCompilerFlags from config.compilerFlags(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilerFlags.py:72)
TESTING: configureDebugging from PETSc.options.debugging(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/debugging.py:25)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCFormatting from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:326)
TESTING: checkCStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:108)
TESTING: checkDynamicLoadFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:337)
TESTING: checkCLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:171)
TESTING: checkDependencyGenerationFlag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1401)
TESTING: checkC99Flag from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1447)
TESTING: checkRestrict from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:137)
TESTING: checkCxxNamespace from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:377)
TESTING: checkCxxOptionalExtensions from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:350)
TESTING: checkCxxStaticInline from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:122)
TESTING: checkCxxLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:435)
TESTING: checkCxx11 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:392)
TESTING: checkFortranTypeSizes from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:602)
TESTING: checkFortranNameMangling from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:661)
TESTING: checkFortranNameManglingDouble from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:698)
TESTING: checkFortranPreprocessor from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:708)
TESTING: checkFortranDefineCompilerOption from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:732)
TESTING: checkFortranLibraries from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:752)
TESTING: checkFortranLinkingCxx from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1107)
TESTING: checkFortran90 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1142)
TESTING: checkFortran90FreeForm from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1155)
TESTING: checkFortran2003 from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1169)
TESTING: checkFortran90Array from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1203)
TESTING: checkFortranModuleInclude from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1290)
TESTING: checkFortranModuleOutput from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1356)
TESTING: setupFrameworkCompilers from config.compilers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/compilers.py:1515)
TESTING: configureClosure from config.utilities.closure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/closure.py:18)
TESTING: configureFortranCPP from PETSc.options.fortranCPP(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/fortranCPP.py:21)
TESTING: checkStdC from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:105)
TESTING: checkStat from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:138)
TESTING: checkSysWait from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:173)
TESTING: checkTime from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:195)
TESTING: checkMath from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:203)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:77)
TESTING: checkRecursiveMacros from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:218)
TESTING: configureCacheDetails from config.utilities.cacheDetails(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/cacheDetails.py:78)
TESTING: check_siginfo_t from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:46)
TESTING: check__int64 from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:52)
TESTING: checkSizeTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:58)
TESTING: checkFileTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:68)
TESTING: checkIntegerTypes from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:63)
TESTING: checkPID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:74)
TESTING: checkUID from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:78)
TESTING: checkSignal from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:85)
TESTING: checkC99Complex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:106)
TESTING: checkCxxComplex from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:117)
TESTING: checkFortranKind from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:138)
TESTING: checkConst from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:150)
TESTING: checkEndian from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:206)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkSizeof from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:259)
TESTING: checkBitsPerByte from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:310)
TESTING: checkVisibility from config.types(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/types.py:356)
TESTING: configureMemAlign from PETSc.options.memAlign(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/memAlign.py:30)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkMath from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:263)
TESTING: checkMathErf from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:282)
TESTING: checkMathTgamma from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:291)
TESTING: checkMathFenv from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:300)
TESTING: checkMathLog2 from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:308)
TESTING: checkRealtime from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:317)
TESTING: checkDynamic from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:333)
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:37)
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/libraryOptions.py:91)
TESTING: configureCPURelax from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:17)
TESTING: configureMemoryBarriers from config.atomics(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/atomics.py:36)
TESTING: checkMemcmp from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:110)
TESTING: checkSysinfo from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:135)
TESTING: checkVPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:158)
TESTING: checkVFPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:165)
TESTING: checkVSNPrintf from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:172)
TESTING: checkNanosleep from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:206)
TESTING: checkSignalHandlerType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:182)
TESTING: checkFreeReturnType from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:192)
TESTING: checkVariableArgumentLists from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:198)
TESTING: checkClassify from config.functions(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/functions.py:89)
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
TESTING: configureFPTrap from config.utilities.FPTrap(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/FPTrap.py:27)
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/featureTestMacros.py:13)
TESTING: configureMissingDefines from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:57)
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:67)
TESTING: configureMissingFunctions from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:73)
TESTING: configureMissingSignals from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:93)
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:110)
TESTING: configureMissingSrandPrototype from config.utilities.missing(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/missing.py:135)
TESTING: configureScalarType from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:37)
TESTING: configurePrecision from PETSc.options.scalarTypes(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/options/scalarTypes.py:77)
TESTING: configureMkdir from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:23)
TESTING: configureAutoreconf from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:45)
TESTING: configurePrograms from config.programs(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/programs.py:72)
TESTING: configureMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:82)
TESTING: configureCheckGNUMake from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:119)
TESTING: configureMakeNP from config.packages.make(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/make.py:157)
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MPICH(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:492)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: configureConversion from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:217)
TESTING: configureMPI2 from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:178)
TESTING: configureTypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:237)
TESTING: configureMPITypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:249)
TESTING: configureMissingPrototypes from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:322)
TESTING: SGIMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:341)
TESTING: CxxMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:351)
TESTING: FortranMPICheck from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:369)
TESTING: configureIO from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:394)
TESTING: findMPIInc from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:466)
TESTING: checkMPICHorOpenMPI from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:431)
TESTING: checkSharedLibrary from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:128)
TESTING: configureMPIEXEC from config.packages.MPI(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/MPI.py:141)
TESTING: alternateConfigureLibrary from config.packages.sprng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Mathematica(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: locateC2html from config.packages.c2html(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/c2html.py:32)
TESTING: alternateConfigureLibrary from config.packages.mpe(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Random123(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.giflib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.gmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mpfr(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.revolve(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureLibrary from config.packages.valgrind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
===============================================================================
It appears you do not have valgrind installed on your system.
We HIGHLY recommend you install it from www.valgrind.org
Or install valgrind-devel or equivalent using your package manager.
Then rerun ./configure
===============================================================================
TESTING: alternateConfigureLibrary from config.packages.memkind(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ctetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengles(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.yaml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Matlab(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PARTY(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ssl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.boost(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.X(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.hwloc(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pami(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Numpy(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/petsc4py.py:121)
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mpi4py.py:71)
TESTING: checkDependencies from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/pthread.py:19)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.pthread(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.szlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.zlib(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opengl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.glut(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openmp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.opencl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.viennacl(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.cusp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureVecCUDA from config.utilities.veccuda(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/utilities/veccuda.py:15)
TESTING: locateCMake from config.packages.cmake(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/cmake.py:36)
TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.eigen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.googletest(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tetgen(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.saws(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.tchem(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.libpng(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Triangle(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Chaco(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.PTScotch(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.metis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pragmatic(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.parmetis(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Zoltan(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/hdf5.py:54)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.hdf5(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.cgns(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ascem-io(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.pflotran(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.alquimia(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.netcdf(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.exodusii(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.med(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.openblas(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:331)
TESTING: checkLib from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:102)
TESTING: check64BitBLASIndices from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:517)
TESTING: checkESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:410)
TESTING: checkPESSL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:450)
TESTING: checkMKL from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:418)
TESTING: checkMissing from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:475)
TESTING: checklsame from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:490)
TESTING: checksdotreturnsdouble from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/BlasLapack.py:553)
TESTING: checkSharedLibrary from config.packages.BlasLapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.fftw(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.pARMS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.spai(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/packages/mkl_sparse.py:41)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.MOAB(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.PaStiX(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.sundials(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuiteSparse(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.SuperLU_MT(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.p4est(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.ml(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.hypre(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU_DIST(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.SuperLU(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: checkDependencies from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkSharedLibrary from config.packages.scalapack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.strumpack(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: checkDependencies from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:719)
TESTING: configureLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:744)
TESTING: check from config.libraries(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/libraries.py:158)
TESTING: checkInclude from config.headers(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/headers.py:86)
TESTING: checkSharedLibrary from config.packages.MUMPS(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:792)
TESTING: alternateConfigureLibrary from config.packages.elemental(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRegression from PETSc.Regression(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Regression.py:36)
TESTING: alternateConfigureLibrary from config.packages.Chombo(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.Trilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.mstk(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.amanzi(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/BuildSystem/config/package.py:796)
TESTING: configureRTLDDefault from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:868)
TESTING: configurePrefetch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:675)
TESTING: configureUnused from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:736)
TESTING: configureDeprecated from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:754)
TESTING: configureIsatty from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:748)
TESTING: configureExpect from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:821)
TESTING: configureAlign from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:774)
TESTING: configureFunctionName from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:828)
TESTING: configureIntptrt from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:846)
TESTING: configureSolaris from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:873)
TESTING: configureLinux from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:886)
TESTING: configureWin32 from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:892)
TESTING: configureCygwinBrokenPipe from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:965)
TESTING: configureDefaultArch from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:981)
TESTING: configureScript from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:998)
TESTING: configureInstall from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1035)
TESTING: configureGCOV from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1047)
TESTING: configureFortranFlush from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1052)
TESTING: configureAtoll from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:731)
TESTING: configureViewFromOptions from PETSc.Configure(/<<BUILDDIR>>/petsc-3.8.4+dfsg1/config/PETSc/Configure.py:1059)
Compilers:
C Compiler: mpicc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
C++ Compiler: mpicxx -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Fortran Compiler: mpif90 -g -O2 -fstack-protector-strong -fPIC -Wdate-time -D_FORTIFY_SOURCE=2
Linkers:
Shared linker: mpicc -Wl,-z,relro -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC
Dynamic linker: mpicc -Wl,-z,relro -fPIC -shared -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC
make:
BLAS/LAPACK: -llapack -lblas
MPI:
Arch:
hdf5:
Includes: -I/usr/include/hdf5/openmpi
Library: -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi
pthread:
MUMPS:
Library: -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord
PTScotch:
Includes: -I/usr/include/scotch
Library: -lptesmumps -lptscotch -lptscotcherr
scalapack:
Library: -lscalapack-openmpi
SuperLU:
Includes: -I/usr/include/superlu
Library: -lsuperlu
SuperLU_DIST:
Includes: -I/usr/include/superlu-dist
Library: -lsuperlu_dist
SuiteSparse:
Includes: -I/usr/include/suitesparse
Library: -lumfpack -lamd -lcholmod -lklu
fftw:
Library: -lfftw3 -lfftw3_mpi
PETSc:
PETSC_ARCH: arm-linux-gnueabihf-complex-debug
PETSC_DIR: /<<BUILDDIR>>/petsc-3.8.4+dfsg1
Scalar type: complex
Precision: double
Clanguage: C
Integer size: 32
shared libraries: enabled
shared library extension: _complex
Memory alignment: 16
xxx=========================================================================xxx
Configure stage complete. Now build PETSc libraries with (gnumake build):
make PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-complex-debug all
xxx=========================================================================xxx
make[1]: Leaving directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
dh_auto_build -plibpetsc-real3.8-dbg -ppetsc3.8-doc -- \
PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real-debug \
CFLAGS="-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=." CXXFLAGS="-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=." \
FCFLAGS="-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=." FFLAGS="-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=."
make -j4 -O PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real-debug CFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=. CXXFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=. FCFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=. FFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=.
sed: -e expression #1, char 41: unknown option to `s'
/bin/sh: 4: [: -a: unexpected operator
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The version of PETSc you are using is out-of-date, we recommend updating to the new release
Available Version: 3.9 Installed Version: 3.8.4
http://www.mcs.anl.gov/petsc/download/index.html
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
make[3]: Entering directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
==========================================
See documentation/faq.html and documentation/bugreporting.html
for help with installation problems. Please send EVERYTHING
printed out below when reporting problems. Please check the
mailing list archives and consider subscribing.
http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html
==========================================
Starting on bm-wb-02 at Fri Apr 13 14:47:46 UTC 2018
Machine characteristics: Linux bm-wb-02 3.19.0-trunk-armmp #1 SMP Debian 3.19.1-1~exp1+plugwash1 (2015-03-28) armv7l GNU/Linux
-----------------------------------------
Using PETSc directory: /<<BUILDDIR>>/petsc-3.8.4+dfsg1
Using PETSc arch: arm-linux-gnueabihf-real-debug
-----------------------------------------
PETSC_VERSION_RELEASE 1
PETSC_VERSION_MAJOR 3
PETSC_VERSION_MINOR 8
PETSC_VERSION_SUBMINOR 4
PETSC_VERSION_PATCH 0
PETSC_VERSION_DATE "Mar, 24, 2018"
PETSC_VERSION_GIT "v3.8.4"
PETSC_VERSION_DATE_GIT "2018-03-24 21:42:57 -0500"
PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \
PETSC_VERSION_ PETSC_VERSION_EQ
PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \
PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \
PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \
PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \
-----------------------------------------
Using configure Options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=/include --mandir=/share/man --infodir=/share/info --sysconfdir=/etc --localstatedir=/var --with-silent-rules=0 --libdir=/lib/arm-linux-gnueabihf --libexecdir=/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=1 --shared-library-extension=_real --with-clanguage=C++ --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --useThreads=0 --with-fortran-interfaces=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=-lspooles --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib="-lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities" --prefix=/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-real-debug --PETSC_ARCH=arm-linux-gnueabihf-real-debug CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -fstack-protector-strong -fPIC" FFLAGS="-g -O2 -fstack-protector-strong -fPIC" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w
Using configuration flags:
#define INCLUDED_PETSCCONF_H
#define IS_COLORING_MAX 65535
#define STDC_HEADERS 1
#define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT
#define PETSC_HAVE_CXX 1
#define PETSC_UINTPTR_T uintptr_t
#define PETSC_HAVE_PTHREAD 1
#define PETSC_DEPRECATED(why) __attribute((deprecated))
#define PETSC_HAVE_FFTW 1
#define PETSC_REPLACE_DIR_SEPARATOR '\\'
#define PETSC_HAVE_HDF5 1
#define PETSC_HAVE_SO_REUSEADDR 1
#define PETSC_HAVE_MPI 1
#define PETSC_PREFETCH_HINT_T2 1
#define PETSC_PREFETCH_HINT_T0 3
#define PETSC_PREFETCH_HINT_T1 2
#define PETSC_HAVE_FORTRAN 1
#define PETSC_DIR "/<<BUILDDIR>>/petsc-3.8.4+dfsg1"
#define PETSC_HAVE_SUITESPARSE 1
#define PETSC_HAVE_HYPRE 1
#define PETSC_LIB_DIR "/usr/lib/petscdir/petsc3.8/arm-linux-gnueabihf-real-debug/lib"
#define PETSC_HAVE_SUPERLU_DIST 1
#define PETSC_USE_SOCKET_VIEWER 1
#define PETSC_USE_ISATTY 1
#define PETSC_SLSUFFIX "so"
#define PETSC_HAVE_SUPERLU 1
#define PETSC_FUNCTION_NAME_CXX __func__
#define PETSC_HAVE_MUMPS 1
#define PETSC_HAVE_ATOLL 1
#define PETSC_HAVE_ATTRIBUTEALIGNED 1
#define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1
#define PETSC_UNUSED __attribute((unused))
#define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned (size)))
#define PETSC_FUNCTION_NAME_C __func__
#define PETSC_USE_SINGLE_LIBRARY 1
#define PETSC_HAVE_BUILTIN_EXPECT 1
#define PETSC_HAVE_PTSCOTCH 1
#define PETSC_DIR_SEPARATOR '/'
#define PETSC_PATH_SEPARATOR ':'
#define PETSC_PREFETCH_HINT_NTA 0
#define PETSC_Prefetch(a,b,c) __builtin_prefetch((a),(b),(c))
#define PETSC_HAVE_BLASLAPACK 1
#define PETSC_HAVE_GZIP 1
#define PETSC_HAVE_STRING_H 1
#define PETSC_HAVE_SYS_TYPES_H 1
#define PETSC_HAVE_ENDIAN_H 1
#define PETSC_HAVE_SYS_PROCFS_H 1
#define PETSC_HAVE_DLFCN_H 1
#define PETSC_HAVE_SCHED_H 1
#define PETSC_HAVE_STDINT_H 1
#define PETSC_HAVE_LINUX_KERNEL_H 1
#define PETSC_HAVE_TIME_H 1
#define PETSC_HAVE_MATH_H 1
#define PETSC_HAVE_INTTYPES_H 1
#define PETSC_TIME_WITH_SYS_TIME 1
#define PETSC_HAVE_SYS_PARAM_H 1
#define PETSC_HAVE_PTHREAD_H 1
#define PETSC_HAVE_UNISTD_H 1
#define PETSC_HAVE_STDLIB_H 1
#define PETSC_HAVE_SYS_WAIT_H 1
#define PETSC_HAVE_SETJMP_H 1
#define PETSC_HAVE_LIMITS_H 1
#define PETSC_HAVE_SYS_UTSNAME_H 1
#define PETSC_HAVE_NETINET_IN_H 1
#define PETSC_HAVE_SYS_SOCKET_H 1
#define PETSC_HAVE_FLOAT_H 1
#define PETSC_HAVE_SEARCH_H 1
#define PETSC_HAVE_SYS_RESOURCE_H 1
#define PETSC_HAVE_SYS_TIMES_H 1
#define PETSC_HAVE_NETDB_H 1
#define PETSC_HAVE_MALLOC_H 1
#define PETSC_HAVE_PWD_H 1
#define PETSC_HAVE_FCNTL_H 1
#define PETSC_HAVE_STRINGS_H 1
#define PETSC_HAVE_SYS_SYSINFO_H 1
#define PETSC_HAVE_SYS_TIME_H 1
#define PETSC_USING_F90 1
#define PETSC_USING_F2003 1
#define PETSC_HAVE_RTLD_NOW 1
#define PETSC_HAVE_RTLD_LOCAL 1
#define PETSC_HAVE_RTLD_LAZY 1
#define PETSC_C_STATIC_INLINE static inline
#define PETSC_HAVE_FORTRAN_UNDERSCORE 1
#define PETSC_HAVE_CXX_NAMESPACE 1
#define PETSC_HAVE_RTLD_GLOBAL 1
#define PETSC_C_RESTRICT __restrict
#define PETSC_CXX_RESTRICT __restrict
#define PETSC_CXX_STATIC_INLINE static inline
#define PETSC_HAVE_LIBBLAS 1
#define PETSC_HAVE_LIBDL 1
#define PETSC_HAVE_LIBGFORTRAN 1
#define PETSC_HAVE_LIBMUMPS_COMMON 1
#define PETSC_HAVE_LIBLAPACK 1
#define PETSC_HAVE_LIBPTSCOTCH 1
#define PETSC_HAVE_LIBFFTW3 1
#define PETSC_HAVE_LIBM 1
#define PETSC_HAVE_LIBMPI_MPIFH 1
#define PETSC_HAVE_LIBDMUMPS 1
#define PETSC_HAVE_LIBPTESMUMPS 1
#define PETSC_HAVE_LIBHYPRE_IJ_MV 1
#define PETSC_HAVE_LIBSUPERLU_DIST 1
#define PETSC_HAVE_LIBSMUMPS 1
#define PETSC_HAVE_LIBHDF5 1
#define PETSC_HAVE_LIBHYPRE_STRUCT_LS 1
#define PETSC_HAVE_LIBMPI_USEMPI_IGNORE_TKR 1
#define PETSC_HAVE_LIBHYPRE_SSTRUCT_LS 1
#define PETSC_HAVE_LIBSCALAPACK_OPENMPI 1
#define PETSC_HAVE_LIBFFTW3_MPI 1
#define PETSC_HAVE_LIBZMUMPS 1
#define PETSC_HAVE_LIBKLU 1
#define PETSC_HAVE_FENV_H 1
#define PETSC_HAVE_LIBCHOLMOD 1
#define PETSC_HAVE_LIBHYPRE_STRUCT_MV 1
#define PETSC_HAVE_LOG2 1
#define PETSC_HAVE_LIBAMD 1
#define PETSC_HAVE_LIBHYPRE_UTILITIES 1
#define PETSC_HAVE_LIBSUPERLU 1
#define PETSC_HAVE_LIBHYPRE_PARCSR_LS 1
#define PETSC_HAVE_LIBPTSCOTCHERR 1
#define PETSC_HAVE_LIBMPI 1
#define PETSC_HAVE_LIBCMUMPS 1
#define PETSC_HAVE_LIBUMFPACK 1
#define PETSC_HAVE_LIBPORD 1
#define PETSC_HAVE_ERF 1
#define PETSC_HAVE_LIBHYPRE_SSTRUCT_MV 1
#define PETSC_HAVE_TGAMMA 1
#define PETSC_HAVE_LIBMPI_USEMPIF08 1
#define PETSC_ARCH "arm-linux-gnueabihf-real-debug"
#define PETSC_USE_SCALAR_REAL 1
#define PETSC_HAVE_ISINF 1
#define PETSC_HAVE_ISNAN 1
#define PETSC_HAVE_ISNORMAL 1
#define PETSC_USE_REAL_DOUBLE 1
#define PETSC_SIZEOF_MPI_COMM 4
#define PETSC_BITS_PER_BYTE 8
#define PETSC_SIZEOF_MPI_FINT 4
#define PETSC_USE_VISIBILITY_C 1
#define PETSC_SIZEOF_VOID_P 4
#define PETSC_RETSIGTYPE void
#define PETSC_HAVE_CXX_COMPLEX 1
#define PETSC_SIZEOF_LONG 4
#define PETSC_USE_FORTRANKIND 1
#define PETSC_USE_VISIBILITY_CXX 1
#define PETSC_SIZEOF_SIZE_T 4
#define PETSC_HAVE_SIGINFO_T 1
#define PETSC_SIZEOF_CHAR 1
#define PETSC_SIZEOF_DOUBLE 8
#define PETSC_SIZEOF_FLOAT 4
#define PETSC_HAVE_C99_COMPLEX 1
#define PETSC_SIZEOF_INT 4
#define PETSC_SIZEOF_LONG_LONG 8
#define PETSC_SIZEOF_SHORT 2
#define PETSC_CLANGUAGE_CXX 1
#define PETSC_USE_ERRORCHECKING 1
#define PETSC_HAVE_DYNAMIC_LIBRARIES 1
#define PETSC_HAVE_SHARED_LIBRARIES 1
#define PETSC_USE_SHARED_LIBRARIES 1
#define PETSC_HAVE_STRCASECMP 1
#define PETSC_HAVE_GET_NPROCS 1
#define PETSC_HAVE_POPEN 1
#define PETSC_HAVE_SIGSET 1
#define PETSC_HAVE_GETWD 1
#define PETSC_HAVE_VSNPRINTF 1
#define PETSC_HAVE_TIMES 1
#define PETSC_HAVE_DLSYM 1
#define PETSC_HAVE_SNPRINTF 1
#define PETSC_HAVE_GETHOSTBYNAME 1
#define PETSC_HAVE_GETCWD 1
#define PETSC_HAVE_DLERROR 1
#define PETSC_HAVE_FORK 1
#define PETSC_HAVE_RAND 1
#define PETSC_HAVE_GETTIMEOFDAY 1
#define PETSC_HAVE_DLCLOSE 1
#define PETSC_HAVE_UNAME 1
#define PETSC_HAVE_GETHOSTNAME 1
#define PETSC_HAVE_MKSTEMP 1
#define PETSC_HAVE_SIGACTION 1
#define PETSC_HAVE_DRAND48 1
#define PETSC_HAVE_MEMALIGN 1
#define PETSC_HAVE_VA_COPY 1
#define PETSC_HAVE_CLOCK 1
#define PETSC_HAVE_ACCESS 1
#define PETSC_HAVE_SIGNAL 1
#define PETSC_HAVE_USLEEP 1
#define PETSC_HAVE_GETRUSAGE 1
#define PETSC_HAVE_VFPRINTF 1
#define PETSC_HAVE_NANOSLEEP 1
#define PETSC_HAVE_GETDOMAINNAME 1
#define PETSC_HAVE_TIME 1
#define PETSC_HAVE_LSEEK 1
#define PETSC_HAVE_SOCKET 1
#define PETSC_HAVE_SYSINFO 1
#define PETSC_HAVE_READLINK 1
#define PETSC_HAVE_REALPATH 1
#define PETSC_HAVE_DLOPEN 1
#define PETSC_HAVE_MEMMOVE 1
#define PETSC_HAVE__GFORTRAN_IARGC 1
#define PETSC_SIGNAL_CAST
#define PETSC_HAVE_SLEEP 1
#define PETSC_HAVE_VPRINTF 1
#define PETSC_HAVE_BZERO 1
#define PETSC_HAVE_GETPAGESIZE 1
#define PETSC_CPU_RELAX() __asm__ __volatile__ ("":::"memory")
#define PETSC_BLASLAPACK_UNDERSCORE 1
#define PETSC_HAVE_MPI_F90MODULE 1
#define PETSC_HAVE_MPI_IALLREDUCE 1
#define PETSC_HAVE_OMPI_MINOR_VERSION 1
#define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1
#define PETSC_HAVE_MPI_IN_PLACE 1
#define PETSC_HAVE_MPI_COMM_C2F 1
#define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1
#define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1
#define PETSC_HAVE_MPI_INT64_T 1
#define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1
#define PETSC_HAVE_MPI_WIN_CREATE 1
#define PETSC_HAVE_MPI_TYPE_DUP 1
#define PETSC_HAVE_MPI_INIT_THREAD 1
#define PETSC_HAVE_MPI_COMBINER_NAMED 1
#define PETSC_HAVE_MPI_LONG_DOUBLE 1
#define PETSC_HAVE_MPI_COMM_F2C 1
#define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1
#define PETSC_HAVE_OMPI_MAJOR_VERSION 2
#define PETSC_HAVE_MPI_REDUCE_SCATTER 1
#define PETSC_HAVE_MPI_COMBINER_DUP 1
#define PETSC_HAVE_MPIIO 1
#define PETSC_HAVE_MPI_COMM_SPAWN 1
#define PETSC_HAVE_MPI_FINT 1
#define PETSC_HAVE_MPI_IBARRIER 1
#define PETSC_HAVE_MPI_ALLTOALLW 1
#define PETSC_HAVE_OMPI_RELEASE_VERSION 1
#define PETSC_HAVE_MPI_REDUCE_LOCAL 1
#define PETSC_HAVE_MPI_REPLACE 1
#define PETSC_HAVE_MPI_EXSCAN 1
#define PETSC_HAVE_MPI_FINALIZED 1
#define PETSC_USE_INFO 1
#define PETSC_Alignx(a,b)
#define PETSC_USE_BACKWARD_LOOP 1
#define PETSC_USE_DEBUG 1
#define PETSC_USE_LOG 1
#define PETSC_IS_COLOR_VALUE_TYPE_F integer2
#define PETSC_IS_COLOR_VALUE_TYPE short
#define PETSC_USE_CTABLE 1
#define PETSC_MEMALIGN 16
#define PETSC__GNU_SOURCE 1
#define PETSC__BSD_SOURCE 1
#define PETSC__DEFAULT_SOURCE 1
#define PETSC_USE_PROC_FOR_SIZE 1
#define PETSC_LEVEL1_DCACHE_LINESIZE 32
#define PETSC_LEVEL1_DCACHE_SIZE 32768
#define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1
#define PETSC_HAVE_GFORTRAN_IARGC 1
#define PETSC_HAVE_H5PSET_FAPL_MPIO 1
#define PETSC_HAVE_SCHED_CPU_SET_T 1
#define PETSC_HAVE_PTHREAD_BARRIER_T 1
#define PETSC_HAVE_SYS_SYSCTL_H 1
-----------------------------------------
Using C/C++ compile: mpicxx -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=. -I/<<BUILDDIR>>/petsc-3.8.4+dfsg1/include -I/<<BUILDDIR>>/petsc-3.8.4+dfsg1/arm-linux-gnueabihf-real-debug/include -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/hdf5/openmpi -I/usr/include/scotch -Wdate-time -D_FORTIFY_SOURCE=2
Using Fortran compile: mpif90 -c -g -O2 -fstack-protector-strong -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=. -I/<<BUILDDIR>>/petsc-3.8.4+dfsg1/include -I/<<BUILDDIR>>/petsc-3.8.4+dfsg1/arm-linux-gnueabihf-real-debug/include -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/hdf5/openmpi -I/usr/include/scotch -Wdate-time -D_FORTIFY_SOURCE=2
-----------------------------------------
Using C/C++ linker: mpicxx
Using C/C++ flags: -Wl,-z,relro -fPIC -Wl,--no-as-needed -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC
Using Fortran linker: mpif90
Using Fortran flags: -Wl,-z,relro -fPIC -g -O2 -fstack-protector-strong -fPIC
-----------------------------------------
Using system modules:
Using mpi.h: # 1 "/usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h" 1
-----------------------------------------
Using libraries: -L/<<BUILDDIR>>/petsc-3.8.4+dfsg1/arm-linux-gnueabihf-real-debug/lib -L/<<BUILDDIR>>/petsc-3.8.4+dfsg1/arm-linux-gnueabihf-real-debug/lib -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lpetsc_real -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lHYPRE_sstruct_ls -lHYPRE_sstruct_mv -lHYPRE_struct_ls -lHYPRE_struct_mv -lHYPRE_utilities -lumfpack -lamd -lcholmod -lklu -lfftw3 -lfftw3_mpi -llapack -lblas -lhdf5 -lmpi -lptesmumps -lptscotch -lptscotcherr -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -lm -lgfortran -lm -lmpi_cxx -lstdc++ -lm -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ldl -lmpi -lgcc_s -lpthread -ldl
------------------------------------------
Using mpiexec: mpiexec
------------------------------------------
Using MAKEFLAGS: -j4 w -j -Otarget --jobserver-fds=3,4 -- PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real-debug CFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=. CXXFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=. FCFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=. FFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4+dfsg1=.
==========================================
make[3]: Leaving directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
make[4]: Entering directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
/usr/bin/python ./config/gmakegen.py --petsc-arch=arm-linux-gnueabihf-real-debug
/usr/bin/python ./config/gmakegentest.py --petsc-arch=arm-linux-gnueabihf-real-debug
FC arm-linux-gnueabihf-real-debug/obj/src/sys/fsrc/somefort.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/info/verboseinfo.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/info/ftn-auto/verboseinfof.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/info/ftn-custom/zverboseinfof.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/ftn-custom/zsys.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/ftn-custom/zutils.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/adebug.o
FC arm-linux-gnueabihf-real-debug/obj/src/sys/f90-src/fsrc/f90_fwrap.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/errabort.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/err.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/errtrace.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/errstop.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/fp.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/signal.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/pstack.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/checkptr.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/ftn-auto/adebugf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/ftn-auto/errf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/ftn-auto/signalf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/ftn-auto/fpf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/ftn-auto/checkptrf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/error/ftn-custom/zerrf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/xmlviewer.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/ftn-auto/plogf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/ftn-custom/zplogf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/xmllogevent.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/plog.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/utils/classlog.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/utils/stagelog.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/version.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/utils/stack.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/gtype.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/gcomm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/logging/utils/eventlog.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/olist.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/pname.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/tagm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/gcookie.o
Use "/usr/bin/make V=1" to see verbose compile lines, "/usr/bin/make V=0" to suppress.
FC arm-linux-gnueabihf-real-debug/obj/src/sys/f90-mod/petscsysmod.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/destroy.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/pgname.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/prefix.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/inherit.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ptype.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/init.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/pinit.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/state.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/options.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/fcallback.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/subcomm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/destroyf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/tagmf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/aoptions.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/pinitf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/inheritf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/optionsf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/statef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/gcookief.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-auto/gcommf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zgcommf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zgtype.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zpgnamef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zpnamef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zprefixf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zoptionsf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zdestroyf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zstartf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zstart.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zversionf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zinheritf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/objects/ftn-custom/zptypef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/python/ftn-custom/zpythonf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/arch.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/python/pythonsys.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/fhost.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/fuser.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/memc.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/psleep.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/mpiu.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/sortd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/sortip.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/pbarrier.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/str.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/sorti.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/pdisplay.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/psplit.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ctable.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/select.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/mpimesg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/sseenabled.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/mathinf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/mpitr.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/mpilong.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/matheq.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/sortif.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/segbuffer.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/mpiuf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/mpits.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/psleepf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/mpitsf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/memcf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/psplitf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/sortdf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-auto/sortipf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-custom/zarchf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-custom/zstrf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-custom/zpbarrierf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/utils/ftn-custom/zfhostf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/time/cputime.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/time/fdate.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/time/ftn-auto/cputimef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/time/ftn-custom/zptimef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/dll/dlimpl.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/dll/ftn-auto/regf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/dll/reg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/dll/dl.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dcoor.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/draw.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dtext.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dpoint.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dmarker.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dline.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dpause.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dflush.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dsave.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dclear.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dmouse.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dviewp.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/drect.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dtri.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/dellipse.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/drawregall.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dflushf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/drawregf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/drawreg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dclearf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dtextf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dpointf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dviewpf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dlinef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dcoorf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dpausef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dsavef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dmarkerf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dellipsef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/drectf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dtrif.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/dmousef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-auto/drawf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-custom/zdrawf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-custom/zdrawregf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-custom/zdtextf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/interface/ftn-custom/zdtrif.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/impls/tikz/tikz.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/impls/null/ftn-auto/drawnullf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/impls/null/drawnull.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/axis.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/impls/image/drawimage.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/lg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/dscatter.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/zoom.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/hists.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/cmap.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/axisc.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/lgc.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/bars.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/image.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-auto/lgcf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-auto/histsf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-auto/axiscf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-auto/dscatterf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-auto/lgf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-auto/barsf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-custom/zaxisf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-custom/zlgcf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/draw/utils/ftn-custom/zzoomf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/flush.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/gll/petscgll.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/view.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/viewregall.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/viewa.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/dlregispetsc.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/viewers.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/dupl.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/viewreg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/ftn-auto/viewregf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/ftn-auto/flushf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/ftn-auto/viewf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/ftn-auto/duplf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/ftn-custom/zviewasetf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/interface/ftn-custom/zviewaf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/binary/ftn-auto/binvf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/binary/f90-custom/zbinvf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/binary/ftn-custom/zbinvf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/draw/ftn-auto/drawvf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/draw/ftn-custom/zdrawvf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/binary/binv.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/string/ftn-custom/zstringvf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/string/stringv.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/draw/drawv.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/hdf5/ftn-auto/hdf5vf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/hdf5/ftn-custom/zhdf5f.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/vtk/ftn-custom/zvtkvf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/vtk/vtkv.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/hdf5/hdf5v.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/glvis/ftn-auto/glvisf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/socket/ftn-custom/zsendf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/glvis/glvis.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/socket/send.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/ascii/ftn-auto/filevf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/ascii/vcreatea.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/ascii/ftn-custom/zfilevf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/ascii/filev.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/ascii/ftn-custom/zvcreatef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/viewer/impls/vu/petscvu.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/interface/random.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/interface/randreg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/interface/dlregisrand.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/interface/ftn-auto/randomf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/interface/ftn-auto/randomcf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/interface/ftn-custom/zrandomf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/interface/randomc.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/impls/rander48/rander48.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/impls/rand48/rand48.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/random/impls/rand/rand.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/bag/ftn-auto/bagf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/bag/ftn-custom/zbagf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/bag/f90-custom/zbagf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/classes/bag/bag.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/ftest.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/ghome.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/rpath.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/mpiuopen.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/fpath.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/fwd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/grpath.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/mprint.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/smatlab.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/sysio.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/fretrieve.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/ftn-auto/sysiof.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/fdir.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/ftn-custom/zghomef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/ftn-custom/zmpiuopenf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/ftn-custom/zsysiof.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/fileio/ftn-custom/zmprintf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/memory/mal.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/memory/mem.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/memory/mhbw.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/memory/ftn-auto/mtrf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/memory/mtr.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/memory/ftn-auto/memf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/memory/ftn-custom/zmtrf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/totalview/tv_data_display.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/interface/isregall.o
CXX arm-linux-gnueabihf-real-debug/obj/src/sys/f90-src/f90_cwrap.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/interface/ftn-auto/isregf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/interface/isreg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/interface/f90-custom/zindexf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/interface/index.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/interface/ftn-auto/indexf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/stride/ftn-auto/stridef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/interface/ftn-custom/zindexf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/stride/stride.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/general/ftn-auto/generalf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/block/ftn-auto/blockf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/block/block.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/block/ftn-custom/zblockf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/general/general.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/impls/f90-custom/zblockf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/iscomp.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/iscoloring.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/isblock.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/isdiff.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/ftn-auto/isdifff.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/ftn-auto/iscoloringf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/ftn-auto/iscompf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/ftn-auto/isblockf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/f90-custom/ziscoloringf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/is/utils/ftn-custom/ziscoloringf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/interface/dlregissf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/interface/sfregi.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/interface/sftype.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/interface/ftn-auto/sff.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/interface/ftn-custom/zsf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/interface/sf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/impls/window/sfwindow.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/isio.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/pmap.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/sf/impls/basic/sfbasic.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/ftn-auto/vsectionisf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/isltog.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/ftn-auto/isltogf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/ftn-auto/pmapf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/f90-custom/zisltogf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/f90-custom/zvsectionisf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/ftn-custom/zisltogf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/vsectionis.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/utils/ftn-custom/zvsectionisf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/interface/dlregisdm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/interface/ao.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/interface/aoreg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/interface/aoregall.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/interface/ftn-auto/aof.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/interface/ftn-custom/zaof.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/impls/mapping/ftn-auto/aomappingf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/impls/mapping/aomapping.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/impls/memscalable/aomemscalable.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/impls/mapping/ftn-custom/zaomappingf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/impls/basic/ftn-custom/zaobasicf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/is/ao/impls/basic/aobasic.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/pf/interface/pfall.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/pf/interface/pf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/pf/interface/ftn-auto/pff.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/pf/impls/constant/const.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/pf/impls/string/cstring.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/veccreate.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/vecreg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/vecregall.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/dlregisvec.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/vector.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/ftn-auto/rvectorf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/ftn-auto/vectorf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/ftn-auto/veccreatef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/f90-custom/zvectorf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/ftn-custom/zvecregf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/ftn-custom/zvectorf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/shared/shvec.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/interface/rvector.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/shared/ftn-auto/shvecf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/hypre/vhyp.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/nest/ftn-auto/vecnestf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/nest/ftn-custom/zvecnestf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/nest/vecnest.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/bvec1.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/bvec2.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/vseqcr.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/bvec3.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/ftn-custom/zbvec2f.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/dvec2.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/ftn-custom/zvsectionf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/seq/ftn-auto/vseqcrf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/pvec2.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/pbvec.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/vmpicr.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/commonmpvec.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/pdvec.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/ftn-custom/zpbvecf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/ftn-auto/commonmpvecf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/ftn-auto/pbvecf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/impls/mpi/ftn-auto/vmpicrf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vinv.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vscat.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vecio.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/comb.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vecstash.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vecmpitoseq.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vecs.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vsection.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vecglvis.o
FC arm-linux-gnueabihf-real-debug/obj/src/vec/f90-mod/petscvecmod.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/projection.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/ftn-auto/vinvf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/ftn-auto/combf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/ftn-auto/vpscatf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/ftn-auto/vscatf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/ftn-auto/projectionf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/ftn-auto/veciof.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/f90-custom/zvsectionf90.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/ftn-custom/zvscatf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/vpscat.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/interface/taggerregi.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/interface/dlregistagger.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/interface/ftn-auto/taggerf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/interface/tagger.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/impls/simple.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/impls/absolute.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/impls/relative.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/impls/andor.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/impls/cdf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/impls/or.o
CXX arm-linux-gnueabihf-real-debug/obj/src/vec/vec/utils/tagger/impls/and.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/ftn-custom/zmat.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/interface/matcoloringregi.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/interface/matcoloring.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/interface/ftn-auto/matcoloringf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/interface/ftn-custom/zmatcoloringf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/degr.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/color.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/dsm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/ido.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/numsrt.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/seq.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/setr.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/minpack/slo.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/natural/natural.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/power/power.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/jp/jp.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/utils/bipartite.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/impls/greedy/greedy.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/utils/valid.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/color/utils/weights.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/partition/spartition.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/partition/partition.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/partition/impls/scotch/scotch.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/partition/impls/scotch/ftn-auto/scotchf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/partition/impls/hierarchical/hierarchical.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/partition/ftn-auto/partitionf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/sp1wd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/partition/ftn-custom/zpartitionf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/spnd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/sprcm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/spqmd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/sregis.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/sorder.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/spectral.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/degree.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/fnroot.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/genqmd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/qmdqt.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/rcm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/fn1wd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/gen1wd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/genrcm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/qmdrch.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/rootls.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/fndsep.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/gennd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/qmdmrg.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/qmdupd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/wbm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/ftn-auto/spectralf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/ftn-custom/zsorderf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/order/amd/amd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/coarsen/coarsen.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/coarsen/scoarsen.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/coarsen/ftn-auto/coarsenf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/coarsen/impls/mis/mis.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/submat/ftn-auto/submatf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/submat/submat.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/coarsen/impls/hem/hem.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/is/ftn-auto/matisf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/fft/fft.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/fft/ftn-custom/zfftf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/fft/fftw/ftn-auto/fftwf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/fft/fftw/ftn-custom/zfftwf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/fft/fftw/fftw.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/is/matis.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baij2.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgefa.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact2.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgedi.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgefa3.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baij.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgefa4.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgefa5.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgefa6.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgefa2.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/dgefa7.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/aijbaij.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact3.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact4.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact9.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact7.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact11.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact5.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijfact13.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijsolvtrannat.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijsolvtran.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijsolv.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/ftn-auto/baijf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/ftn-custom/zbaijf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/mpi/mmbaij.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/seq/baijsolvnat.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/mpi/mpb_baij.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/mpi/ftn-auto/mpibaijf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/mpi/ftn-custom/zmpibaijf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/mpi/baijov.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/localref/mlocalref.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/localref/ftn-auto/mlocalreff.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/normal/normm.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/baij/mpi/mpibaij.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/normal/normmh.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/normal/ftn-auto/normmhf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/normal/ftn-auto/normmf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/mffddef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/mfregis.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/ftn-auto/mffddeff.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/wp.o
FC arm-linux-gnueabihf-real-debug/obj/src/mat/f90-mod/petscmatmod.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/mffd.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/ftn-auto/mffdf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/ftn-auto/wpf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/mffd/ftn-custom/zmffdf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/composite/ftn-auto/mcompositef.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/adj/mpi/ftn-auto/mpiadjf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/composite/mcomposite.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/adj/mpi/ftn-custom/zmpiadjf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/maij/ftn-auto/maijf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/adj/mpi/mpiadj.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/lrc/lrc.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/lrc/ftn-auto/lrcf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/shell/ftn-auto/shellf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/shell/shellcnv.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/shell/shell.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/shell/ftn-custom/zshellf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/hypre/mhypre.o
/<<BUILDDIR>>/petsc-3.8.4+dfsg1/src/mat/impls/hypre/mhypre.c:1453:19: error: macro "hypre_TFree" requires 2 arguments, but only 1 given
hypre_TFree(ptr);
^
/<<BUILDDIR>>/petsc-3.8.4+dfsg1/src/mat/impls/hypre/mhypre.c: In function 'PetscErrorCode hypre_array_destroy(void*)':
/<<BUILDDIR>>/petsc-3.8.4+dfsg1/src/mat/impls/hypre/mhypre.c:1453:4: error: 'hypre_TFree' was not declared in this scope
hypre_TFree(ptr);
^~~~~~~~~~~
/<<BUILDDIR>>/petsc-3.8.4+dfsg1/src/mat/impls/hypre/mhypre.c:1453:4: note: suggested alternative: 'hypre_Free'
hypre_TFree(ptr);
^~~~~~~~~~~
hypre_Free
gmakefile:227: recipe for target 'arm-linux-gnueabihf-real-debug/obj/src/mat/impls/hypre/mhypre.o' failed
make[4]: *** [arm-linux-gnueabihf-real-debug/obj/src/mat/impls/hypre/mhypre.o] Error 1
make[4]: *** Waiting for unfinished jobs....
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/python/pythonmat.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/python/ftn-custom/zpythonmf.o
CXX arm-linux-gnueabihf-real-debug/obj/src/mat/impls/maij/maij.o
make[4]: Leaving directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
/<<BUILDDIR>>/petsc-3.8.4+dfsg1/lib/petsc/conf/rules:81: recipe for target 'gnumake' failed
make[3]: *** [gnumake] Error 2
[1;31m**************************ERROR*************************************
Error during compile, check arm-linux-gnueabihf-real-debug/lib/petsc/conf/make.log
Send it and arm-linux-gnueabihf-real-debug/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov
********************************************************************[0;39m[0;49m
make[2]: Entering directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
makefile:30: recipe for target 'all' failed
make[2]: *** [all] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
dh_auto_build: make -j4 -O PETSC_DIR=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1 PETSC_ARCH=arm-linux-gnueabihf-real-debug CFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=. CXXFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=. FCFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=. FFLAGS=-fdebug-prefix-map=/<<BUILDDIR>>/petsc-3.8.4\+dfsg1=. returned exit code 2
debian/rules:227: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/petsc-3.8.4+dfsg1'
debian/rules:138: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-04-13T15:13:56Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 2522
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 661
Job: petsc_3.8.4+dfsg1-1
Machine Architecture: armhf
Package: petsc
Package-Time: 3266
Source-Version: 3.8.4+dfsg1-1
Space: 0
Status: failed
Version: 3.8.4+dfsg1-1+b1
--------------------------------------------------------------------------------
Finished at 2018-04-13T15:13:56Z
Build needed 00:00:00, 0k disc space