Raspbian Package Auto-Building

Build log for pbseqlib (5.3.3+dfsg-4) on armhf

pbseqlib5.3.3+dfsg-4armhf → 2020-08-14 19:39:48

sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019

+==============================================================================+
| pbseqlib 5.3.3+dfsg-4 (armhf)                Fri, 14 Aug 2020 19:19:02 +0000 |
+==============================================================================+

Package: pbseqlib
Version: 5.3.3+dfsg-4
Source Version: 5.3.3+dfsg-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-bb036125-9175-4fc6-bf31-37ffbeb303f3' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 38s (657 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pbseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pbseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/pbseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 982 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main pbseqlib 5.3.3+dfsg-4 (dsc) [2429 B]
Get:2 http://172.17.0.1/private bullseye-staging/main pbseqlib 5.3.3+dfsg-4 (tar) [970 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main pbseqlib 5.3.3+dfsg-4 (diff) [8976 B]
Fetched 982 kB in 1s (722 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbseqlib-r5kPRY/pbseqlib-5.3.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-r5kPRY' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-en7FNO/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-en7FNO/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-en7FNO/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2027 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-en7FNO/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils libpam-cap sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (19.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13865 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev
Filtered Build-Depends: debhelper-compat (= 12), meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev
dpkg-deb: building package 'sbuild-build-depends-pbseqlib-dummy' in '/<<BUILDDIR>>/resolver-en7FNO/apt_archive/sbuild-build-depends-pbseqlib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-pbseqlib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Sources [579 B]
Get:5 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Packages [663 B]
Fetched 2575 B in 1s (2398 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-en7FNO/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...

Install pbseqlib build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  googletest groff-base hdf5-helpers intltool-debian libaec-dev libaec0
  libarchive-zip-perl libarchive13 libboost-dev libboost1.71-dev libbrotli1
  libcroco3 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1
  libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgssapi-krb5-2 libgtest-dev libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libhts-dev libhts3 libicu67 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzma-dev
  libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpbbam-dev libpbbam1.0.6
  libpbcopper-dev libpbcopper1.3.0 libpipeline1 libprocps8 libpsl5
  libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0
  librtmp1 libsigsegv2 libssh2-1 libssl-dev libssl1.1 libsub-override-perl
  libsz2 libtool libuchardet0 libuv1 libxml2 m4 man-db meson mime-support
  ninja-build pkg-config po-debconf procps python3 python3-minimal python3.8
  python3.8-minimal zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cmake-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.71-doc
  libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev
  libboost-context1.71-dev libboost-contract1.71-dev
  libboost-coroutine1.71-dev libboost-date-time1.71-dev
  libboost-exception1.71-dev libboost-fiber1.71-dev
  libboost-filesystem1.71-dev libboost-graph1.71-dev
  libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev
  libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev
  libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev
  libboost-program-options1.71-dev libboost-python1.71-dev
  libboost-random1.71-dev libboost-regex1.71-dev
  libboost-serialization1.71-dev libboost-stacktrace1.71-dev
  libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
  libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
  libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user
  libhdf5-doc liblzma-doc libssl-doc libtool-doc gfortran | fortran95-compiler
  gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
  python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
  libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev cmake cmake-data debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  googletest groff-base hdf5-helpers intltool-debian libaec-dev libaec0
  libarchive-zip-perl libarchive13 libboost-dev libboost1.71-dev libbrotli1
  libcroco3 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1
  libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgssapi-krb5-2 libgtest-dev libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libhts-dev libhts3 libicu67 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzma-dev
  libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpbbam-dev libpbbam1.0.6
  libpbcopper-dev libpbcopper1.3.0 libpipeline1 libprocps8 libpsl5
  libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0
  librtmp1 libsigsegv2 libssh2-1 libssl-dev libssl1.1 libsub-override-perl
  libsz2 libtool libuchardet0 libuv1 libxml2 m4 man-db meson mime-support
  ninja-build pkg-config po-debconf procps python3 python3-minimal python3.8
  python3.8-minimal sbuild-build-depends-pbseqlib-dummy zlib1g-dev
0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded.
Need to get 53.4 MB/54.6 MB of archives.
After this operation, 301 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-en7FNO/apt_archive ./ sbuild-build-depends-pbseqlib-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.5-2 [752 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.5-2 [1628 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.5-2 [1677 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.5-2 [420 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-7 [258 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-2 [61.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1+b1 [286 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.0-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.38.0-3 [115 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf googletest all 1.10.0-3 [626 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-6+b1 [9099 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b3 [4620 B]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1+b1 [285 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-6+rpi1 [232 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libgtest-dev armhf 1.10.0-3 [218 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-1.1 [241 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:2.0.5-1.1 [66.0 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-5 [321 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.10.2-5 [4796 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libpbcopper1.3.0 armhf 1.3.0+dfsg-3 [277 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libpbbam1.0.6 armhf 1.0.6+dfsg-2+rpi1 [565 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libssl-dev armhf 1.1.1g-1 [1573 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpbbam-dev armhf 1.0.6+dfsg-2+rpi1 [86.1 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libpbcopper-dev armhf 1.3.0+dfsg-3 [149 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf ninja-build armhf 1.10.0-2 [90.5 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf meson all 0.54.3-1 [400 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 53.4 MB in 24s (2230 kB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 13865 files and directories currently installed.)
Preparing to unpack .../0-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../1-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../2-libpipeline1_1.5.2-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.2-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../3-man-db_2.9.3-2_armhf.deb ...
Unpacking man-db (2.9.3-2) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../4-libssl1.1_1.1.1g-1_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1g-1) ...
Selecting previously unselected package libpython3.8-minimal:armhf.
Preparing to unpack .../5-libpython3.8-minimal_3.8.5-2_armhf.deb ...
Unpacking libpython3.8-minimal:armhf (3.8.5-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../6-libexpat1_2.2.9-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.9-1) ...
Selecting previously unselected package python3.8-minimal.
Preparing to unpack .../7-python3.8-minimal_3.8.5-2_armhf.deb ...
Unpacking python3.8-minimal (3.8.5-2) ...
Setting up libssl1.1:armhf (1.1.1g-1) ...
Setting up libpython3.8-minimal:armhf (3.8.5-2) ...
Setting up libexpat1:armhf (2.2.9-1) ...
Setting up python3.8-minimal (3.8.5-2) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 14694 files and directories currently installed.)
Preparing to unpack .../python3-minimal_3.8.2-3_armhf.deb ...
Unpacking python3-minimal (3.8.2-3) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.64_all.deb ...
Unpacking mime-support (3.64) ...
Selecting previously unselected package libpython3.8-stdlib:armhf.
Preparing to unpack .../libpython3.8-stdlib_3.8.5-2_armhf.deb ...
Unpacking libpython3.8-stdlib:armhf (3.8.5-2) ...
Selecting previously unselected package python3.8.
Preparing to unpack .../python3.8_3.8.5-2_armhf.deb ...
Unpacking python3.8 (3.8.5-2) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../libpython3-stdlib_3.8.2-3_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.8.2-3) ...
Setting up python3-minimal (3.8.2-3) ...
Selecting previously unselected package python3.
(Reading database ... 15090 files and directories currently installed.)
Preparing to unpack .../00-python3_3.8.2-3_armhf.deb ...
Unpacking python3 (3.8.2-3) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../01-libncurses6_6.2-1_armhf.deb ...
Unpacking libncurses6:armhf (6.2-1) ...
Selecting previously unselected package libprocps8:armhf.
Preparing to unpack .../02-libprocps8_2%3a3.3.16-5_armhf.deb ...
Unpacking libprocps8:armhf (2:3.3.16-5) ...
Selecting previously unselected package procps.
Preparing to unpack .../03-procps_2%3a3.3.16-5_armhf.deb ...
Unpacking procps (2:3.3.16-5) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../04-libmagic-mgc_1%3a5.38-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-5) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../05-libmagic1_1%3a5.38-5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-5) ...
Selecting previously unselected package file.
Preparing to unpack .../06-file_1%3a5.38-5_armhf.deb ...
Unpacking file (1:5.38-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../07-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../08-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../09-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../10-autoconf_2.69-11.1_all.deb ...
Unpacking autoconf (2.69-11.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../12-automake_1%3a1.16.2-3_all.deb ...
Unpacking automake (1:1.16.2-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../13-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../14-cmake-data_3.16.3-3+rpi1_all.deb ...
Unpacking cmake-data (3.16.3-3+rpi1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../15-libicu67_67.1-3_armhf.deb ...
Unpacking libicu67:armhf (67.1-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../16-libxml2_2.9.10+dfsg-5+b1_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-5+b1) ...
Selecting previously unselected package libarchive13:armhf.
Preparing to unpack .../17-libarchive13_3.4.3-2_armhf.deb ...
Unpacking libarchive13:armhf (3.4.3-2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../18-libbrotli1_1.0.7-7_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-7) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../19-libkrb5support0_1.17-10+b3_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-10+b3) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../20-libk5crypto3_1.17-10+b3_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-10+b3) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../21-libkeyutils1_1.6.1-2_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6.1-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../22-libkrb5-3_1.17-10+b3_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-10+b3) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../23-libgssapi-krb5-2_1.17-10+b3_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-10+b3) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../24-libnghttp2-14_1.41.0-2_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.41.0-2) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../25-libpsl5_0.21.0-1.1_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../27-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../28-libcurl4_7.68.0-1+b1_armhf.deb ...
Unpacking libcurl4:armhf (7.68.0-1+b1) ...
Selecting previously unselected package libjsoncpp1:armhf.
Preparing to unpack .../29-libjsoncpp1_1.7.4-3.1_armhf.deb ...
Unpacking libjsoncpp1:armhf (1.7.4-3.1) ...
Selecting previously unselected package librhash0:armhf.
Preparing to unpack .../30-librhash0_1.4.0-1_armhf.deb ...
Unpacking librhash0:armhf (1.4.0-1) ...
Selecting previously unselected package libuv1:armhf.
Preparing to unpack .../31-libuv1_1.38.0-3_armhf.deb ...
Unpacking libuv1:armhf (1.38.0-3) ...
Selecting previously unselected package cmake.
Preparing to unpack .../32-cmake_3.16.3-3+rpi1_armhf.deb ...
Unpacking cmake (3.16.3-3+rpi1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../33-libtool_2.4.6-14_all.deb ...
Unpacking libtool (2.4.6-14) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../34-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../35-libdebhelper-perl_13.2_all.deb ...
Unpacking libdebhelper-perl (13.2) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../36-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../37-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../38-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../39-dh-strip-nondeterminism_1.9.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.9.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../40-libelf1_0.180-1_armhf.deb ...
Unpacking libelf1:armhf (0.180-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../41-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../42-libglib2.0-0_2.64.4-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.64.4-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../43-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../44-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../45-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../46-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../47-debhelper_13.2_all.deb ...
Unpacking debhelper (13.2) ...
Selecting previously unselected package googletest.
Preparing to unpack .../48-googletest_1.10.0-3_all.deb ...
Unpacking googletest (1.10.0-3) ...
Selecting previously unselected package hdf5-helpers.
Preparing to unpack .../49-hdf5-helpers_1.10.6+repack-2_armhf.deb ...
Unpacking hdf5-helpers (1.10.6+repack-2) ...
Selecting previously unselected package libaec0:armhf.
Preparing to unpack .../50-libaec0_1.0.4-1_armhf.deb ...
Unpacking libaec0:armhf (1.0.4-1) ...
Selecting previously unselected package libsz2:armhf.
Preparing to unpack .../51-libsz2_1.0.4-1_armhf.deb ...
Unpacking libsz2:armhf (1.0.4-1) ...
Selecting previously unselected package libaec-dev:armhf.
Preparing to unpack .../52-libaec-dev_1.0.4-1_armhf.deb ...
Unpacking libaec-dev:armhf (1.0.4-1) ...
Selecting previously unselected package libboost1.71-dev:armhf.
Preparing to unpack .../53-libboost1.71-dev_1.71.0-6+b1_armhf.deb ...
Unpacking libboost1.71-dev:armhf (1.71.0-6+b1) ...
Selecting previously unselected package libboost-dev:armhf.
Preparing to unpack .../54-libboost-dev_1.71.0.3+b3_armhf.deb ...
Unpacking libboost-dev:armhf (1.71.0.3+b3) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../55-libcurl3-gnutls_7.68.0-1+b1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.68.0-1+b1) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../56-libdeflate0_1.6-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.6-1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../57-libgfortran5_10.1.0-6+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (10.1.0-6+rpi1) ...
Selecting previously unselected package libgtest-dev:armhf.
Preparing to unpack .../58-libgtest-dev_1.10.0-3_armhf.deb ...
Unpacking libgtest-dev:armhf (1.10.0-3) ...
Selecting previously unselected package libhdf5-103-1:armhf.
Preparing to unpack .../59-libhdf5-103-1_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-103-1:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libhdf5-cpp-103-1:armhf.
Preparing to unpack .../60-libhdf5-cpp-103-1_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libhdf5-fortran-102:armhf.
Preparing to unpack .../61-libhdf5-fortran-102_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-fortran-102:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libhdf5-hl-100:armhf.
Preparing to unpack .../62-libhdf5-hl-100_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libhdf5-hl-fortran-100:armhf.
Preparing to unpack .../63-libhdf5-hl-fortran-100_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libhdf5-hl-cpp-100:armhf.
Preparing to unpack .../64-libhdf5-hl-cpp-100_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../65-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../66-libjpeg62-turbo_1%3a2.0.5-1.1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../67-libjpeg62-turbo-dev_1%3a2.0.5-1.1_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:2.0.5-1.1) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../68-libjpeg-dev_1%3a2.0.5-1.1_all.deb ...
Unpacking libjpeg-dev (1:2.0.5-1.1) ...
Selecting previously unselected package libhdf5-dev.
Preparing to unpack .../69-libhdf5-dev_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-dev (1.10.6+repack-2) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../70-libhts3_1.10.2-5_armhf.deb ...
Unpacking libhts3:armhf (1.10.2-5) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../71-liblzma-dev_5.2.4-1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.4-1) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../72-libhts-dev_1.10.2-5_armhf.deb ...
Unpacking libhts-dev:armhf (1.10.2-5) ...
Selecting previously unselected package libpbcopper1.3.0.
Preparing to unpack .../73-libpbcopper1.3.0_1.3.0+dfsg-3_armhf.deb ...
Unpacking libpbcopper1.3.0 (1.3.0+dfsg-3) ...
Selecting previously unselected package libpbbam1.0.6:armhf.
Preparing to unpack .../74-libpbbam1.0.6_1.0.6+dfsg-2+rpi1_armhf.deb ...
Unpacking libpbbam1.0.6:armhf (1.0.6+dfsg-2+rpi1) ...
Selecting previously unselected package libssl-dev:armhf.
Preparing to unpack .../75-libssl-dev_1.1.1g-1_armhf.deb ...
Unpacking libssl-dev:armhf (1.1.1g-1) ...
Selecting previously unselected package libpbbam-dev.
Preparing to unpack .../76-libpbbam-dev_1.0.6+dfsg-2+rpi1_armhf.deb ...
Unpacking libpbbam-dev (1.0.6+dfsg-2+rpi1) ...
Selecting previously unselected package libpbcopper-dev.
Preparing to unpack .../77-libpbcopper-dev_1.3.0+dfsg-3_armhf.deb ...
Unpacking libpbcopper-dev (1.3.0+dfsg-3) ...
Selecting previously unselected package ninja-build.
Preparing to unpack .../78-ninja-build_1.10.0-2_armhf.deb ...
Unpacking ninja-build (1.10.0-2) ...
Selecting previously unselected package meson.
Preparing to unpack .../79-meson_0.54.3-1_all.deb ...
Unpacking meson (0.54.3-1) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../80-pkg-config_0.29.2-1_armhf.deb ...
Unpacking pkg-config (0.29.2-1) ...
Selecting previously unselected package sbuild-build-depends-pbseqlib-dummy.
Preparing to unpack .../81-sbuild-build-depends-pbseqlib-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-pbseqlib-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up mime-support (3.64) ...
Setting up hdf5-helpers (1.10.6+repack-2) ...
Setting up libicu67:armhf (67.1-3) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.4-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.2) ...
Setting up libbrotli1:armhf (1.0.7-7) ...
Setting up libboost1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libnghttp2-14:armhf (1.41.0-2) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up libdeflate0:armhf (1.6-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up googletest (1.10.0-3) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up ninja-build (1.10.0-2) ...
Setting up libkrb5support0:armhf (1.17-10+b3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libuv1:armhf (1.38.0-3) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.0.5-1.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libssl-dev:armhf (1.1.1g-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up pkg-config (0.29.2-1) ...
Setting up libk5crypto3:armhf (1.17-10+b3) ...
Setting up libgfortran5:armhf (10.1.0-6+rpi1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up librhash0:armhf (1.4.0-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.16.3-3+rpi1) ...
Setting up libkrb5-3:armhf (1.17-10+b3) ...
Setting up libboost-dev:armhf (1.71.0.3+b3) ...
Setting up libpython3.8-stdlib:armhf (3.8.5-2) ...
Setting up python3.8 (3.8.5-2) ...
Setting up libelf1:armhf (0.180-1) ...
Setting up libpbcopper1.3.0 (1.3.0+dfsg-3) ...
Setting up libxml2:armhf (2.9.10+dfsg-5+b1) ...
Setting up libprocps8:armhf (2:3.3.16-5) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libgtest-dev:armhf (1.10.0-3) ...
Setting up libtool (2.4.6-14) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up libaec-dev:armhf (1.0.4-1) ...
Setting up libjpeg-dev (1:2.0.5-1.1) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up libgssapi-krb5-2:armhf (1.17-10+b3) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libpbcopper-dev (1.3.0+dfsg-3) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up libcurl4:armhf (7.68.0-1+b1) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.2-3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up meson (0.54.3-1) ...
Setting up libcurl3-gnutls:armhf (7.68.0-1+b1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libhdf5-fortran-102:armhf (1.10.6+repack-2) ...
Setting up cmake (3.16.3-3+rpi1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up libhts3:armhf (1.10.2-5) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.10.2-5) ...
Setting up libpbbam1.0.6:armhf (1.0.6+dfsg-2+rpi1) ...
Setting up libhdf5-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpbbam-dev (1.0.6+dfsg-2+rpi1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2) ...
Setting up sbuild-build-depends-pbseqlib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.35-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.1.0-6+rpi1 gcc-10_10.1.0-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-1+b1 aptitude-common_0.8.13-1 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1+rpi1 binutils-arm-linux-gnueabihf_2.35-1+rpi1 binutils-common_2.35-1+rpi1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.1.0-6+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1+rpi1 g++-10_10.1.0-6+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.1.0-6+rpi1 gcc-10-base_10.1.0-6+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 googletest_1.10.0-3 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.1.0-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.1.0-6+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-1+rpi1 libblkid1_2.36-2 libboost-dev_1.71.0.3+b3 libboost-iostreams1.71.0_1.71.0-6+b1 libboost1.71-dev_1.71.0-6+b1 libbrotli1_1.0.7-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.42-2 libcap2-bin_1:2.42-2 libcc1-0_10.1.0-6+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1+rpi1 libctf0_2.35-1+rpi1 libcurl3-gnutls_7.68.0-1+b1 libcurl4_7.68.0-1+b1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdeflate0_1.6-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.180-1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.1.0-6+rpi1 libgcc-s1_10.1.0-6+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.1.0-6+rpi1 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libgtest-dev_1.10.0-3 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libhts-dev_1.10.2-5 libhts3_1.10.2-5 libicu67_67.1-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjpeg-dev_1:2.0.5-1.1 libjpeg62-turbo_1:2.0.5-1.1 libjpeg62-turbo-dev_1:2.0.5-1.1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-cap_1:2.42-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpbbam-dev_1.0.6+dfsg-2+rpi1 libpbbam1.0.6_1.0.6+dfsg-2+rpi1 libpbcopper-dev_1.3.0+dfsg-3 libpbcopper1.3.0_1.3.0+dfsg-3 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.5-2 libpython3.8-stdlib_3.8.5-2 libreadline8_8.0-4 librhash0_1.4.0-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-2 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1g-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-2+rpi1+b1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-6+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libunistring2_0.9.10-4 libuuid1_2.36-2 libuv1_1.38.0-3 libxapian30_1.4.15-1 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 meson_0.54.3-1 mime-support_3.64 mount_2.36-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 ninja-build_1.10.0-2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 procps_2:3.3.16-5 python3_3.8.2-3 python3-minimal_3.8.2-3 python3.8_3.8.5-2 python3.8-minimal_3.8.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbseqlib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.ct9lMH9u/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 29 14:36:02 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbseqlib_5.3.3+dfsg-4.dsc
dpkg-source: info: extracting pbseqlib in /<<BUILDDIR>>/pbseqlib-5.3.3+dfsg
dpkg-source: info: unpacking pbseqlib_5.3.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbseqlib_5.3.3+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-1.10.1-support.patch
dpkg-source: info: applying hdf5-1.10.0-support.patch
dpkg-source: info: applying meson.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=d540cc9aba1e46398de3fa2f71b5e534
JOURNAL_STREAM=8:18935
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-bb036125-9175-4fc6-bf31-37ffbeb303f3
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c144631

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package pbseqlib
dpkg-buildpackage: info: source version 5.3.3+dfsg-4
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg'
dh_auto_clean
find -name defines.mk -delete
rm -f pbdata/libconfig.h
make[1]: Leaving directory '/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg'
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf
The Meson build system
Version: 0.54.3
Source dir: /<<BUILDDIR>>/pbseqlib-5.3.3+dfsg
Build dir: /<<BUILDDIR>>/pbseqlib-5.3.3+dfsg/obj-arm-linux-gnueabihf
Build type: native build
Project name: libblasr
Project version: 5.3.3
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -I/usr/include/hdf5/serial'
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -I/usr/include/hdf5/serial'
C++ compiler for the host machine: c++ (gcc 10.1.0 "c++ (Raspbian 10.1.0-6+rpi1) 10.1.0")
C++ linker for the host machine: c++ ld.bfd 2.35
Host machine cpu family: arm
Host machine cpu: armv7l
Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor -Wdelete-non-virtual-dtor: YES 
Compiler for C++ supports arguments -Wno-unused-variable -Wunused-variable: YES 
Compiler for C++ supports arguments -Wno-non-virtual-dtor -Wnon-virtual-dtor: YES 
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency Boost found: YES 1.71.0 (/usr/include)
Run-time dependency pbbam found: YES 1.0.6
Run-time dependency zlib found: YES 1.2.11
Library rt found: YES
WARNING: Project targeting '>= 0.46.0' but tried to use feature introduced in '0.49.0': disabler arg in dependency
Run-time dependency HDF5 for cpp found: YES 1.10.6
Configuring LibBlasrConfig.h using configuration
Program tools/check-formatting found: YES (/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg/tools/check-formatting)
Run-time dependency GTest found: YES 1.10.0
Build targets in project: 2
WARNING: Project specifies a minimum meson_version '>= 0.46.0' but uses features which were added in newer versions:
 * 0.49.0: {'disabler arg in dependency'}

Option buildtype is: plain [default: release]
Found ninja-1.10.0 at /usr/bin/ninja
   dh_auto_build -a
	cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v
[1/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_BufferedHDF2DArray.cpp.o' -MF 'blasr@sha/hdf_BufferedHDF2DArray.cpp.o.d' -o 'blasr@sha/hdf_BufferedHDF2DArray.cpp.o' -c ../hdf/BufferedHDF2DArray.cpp
[2/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_DatasetCollection.cpp.o' -MF 'blasr@sha/hdf_DatasetCollection.cpp.o.d' -o 'blasr@sha/hdf_DatasetCollection.cpp.o' -c ../hdf/DatasetCollection.cpp
[3/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_BufferedHDFArray.cpp.o' -MF 'blasr@sha/hdf_BufferedHDFArray.cpp.o.d' -o 'blasr@sha/hdf_BufferedHDFArray.cpp.o' -c ../hdf/BufferedHDFArray.cpp
[4/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFAlnGroupGroup.cpp.o' -MF 'blasr@sha/hdf_HDFAlnGroupGroup.cpp.o.d' -o 'blasr@sha/hdf_HDFAlnGroupGroup.cpp.o' -c ../hdf/HDFAlnGroupGroup.cpp
[5/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFAttributable.cpp.o' -MF 'blasr@sha/hdf_HDFAttributable.cpp.o.d' -o 'blasr@sha/hdf_HDFAttributable.cpp.o' -c ../hdf/HDFAttributable.cpp
[6/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFAtom.cpp.o' -MF 'blasr@sha/hdf_HDFAtom.cpp.o.d' -o 'blasr@sha/hdf_HDFAtom.cpp.o' -c ../hdf/HDFAtom.cpp
[7/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFAlnInfoGroup.cpp.o' -MF 'blasr@sha/hdf_HDFAlnInfoGroup.cpp.o.d' -o 'blasr@sha/hdf_HDFAlnInfoGroup.cpp.o' -c ../hdf/HDFAlnInfoGroup.cpp
[8/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFCmpSupportedFields.cpp.o' -MF 'blasr@sha/hdf_HDFCmpSupportedFields.cpp.o.d' -o 'blasr@sha/hdf_HDFCmpSupportedFields.cpp.o' -c ../hdf/HDFCmpSupportedFields.cpp
[9/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFData.cpp.o' -MF 'blasr@sha/hdf_HDFData.cpp.o.d' -o 'blasr@sha/hdf_HDFData.cpp.o' -c ../hdf/HDFData.cpp
[10/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFBaxWriter.cpp.o' -MF 'blasr@sha/hdf_HDFBaxWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFBaxWriter.cpp.o' -c ../hdf/HDFBaxWriter.cpp
[11/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFFile.cpp.o' -MF 'blasr@sha/hdf_HDFFile.cpp.o.d' -o 'blasr@sha/hdf_HDFFile.cpp.o' -c ../hdf/HDFFile.cpp
[12/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFGroup.cpp.o' -MF 'blasr@sha/hdf_HDFGroup.cpp.o.d' -o 'blasr@sha/hdf_HDFGroup.cpp.o' -c ../hdf/HDFGroup.cpp
[13/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFCmpExperimentGroup.cpp.o' -MF 'blasr@sha/hdf_HDFCmpExperimentGroup.cpp.o.d' -o 'blasr@sha/hdf_HDFCmpExperimentGroup.cpp.o' -c ../hdf/HDFCmpExperimentGroup.cpp
[14/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFBaseCallsWriter.cpp.o' -MF 'blasr@sha/hdf_HDFBaseCallsWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFBaseCallsWriter.cpp.o' -c ../hdf/HDFBaseCallsWriter.cpp
[15/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFPulseH5Writer.cpp.o' -MF 'blasr@sha/hdf_HDFPulseH5Writer.cpp.o.d' -o 'blasr@sha/hdf_HDFPulseH5Writer.cpp.o' -c ../hdf/HDFPulseH5Writer.cpp
[16/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFNewBasReader.cpp.o' -MF 'blasr@sha/hdf_HDFNewBasReader.cpp.o.d' -o 'blasr@sha/hdf_HDFNewBasReader.cpp.o' -c ../hdf/HDFNewBasReader.cpp
[17/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFPulseDataFile.cpp.o' -MF 'blasr@sha/hdf_HDFPulseDataFile.cpp.o.d' -o 'blasr@sha/hdf_HDFPulseDataFile.cpp.o' -c ../hdf/HDFPulseDataFile.cpp
[18/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFPulseWriter.cpp.o' -MF 'blasr@sha/hdf_HDFPulseWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFPulseWriter.cpp.o' -c ../hdf/HDFPulseWriter.cpp
[19/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFRegionsWriter.cpp.o' -MF 'blasr@sha/hdf_HDFRegionsWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFRegionsWriter.cpp.o' -c ../hdf/HDFRegionsWriter.cpp
[20/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFScanDataReader.cpp.o' -MF 'blasr@sha/hdf_HDFScanDataReader.cpp.o.d' -o 'blasr@sha/hdf_HDFScanDataReader.cpp.o' -c ../hdf/HDFScanDataReader.cpp
[21/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFPulseCallsWriter.cpp.o' -MF 'blasr@sha/hdf_HDFPulseCallsWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFPulseCallsWriter.cpp.o' -c ../hdf/HDFPulseCallsWriter.cpp
[22/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFRegionTableReader.cpp.o' -MF 'blasr@sha/hdf_HDFRegionTableReader.cpp.o.d' -o 'blasr@sha/hdf_HDFRegionTableReader.cpp.o' -c ../hdf/HDFRegionTableReader.cpp
[23/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFScanDataWriter.cpp.o' -MF 'blasr@sha/hdf_HDFScanDataWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFScanDataWriter.cpp.o' -c ../hdf/HDFScanDataWriter.cpp
[24/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFWriterBase.cpp.o' -MF 'blasr@sha/hdf_HDFWriterBase.cpp.o.d' -o 'blasr@sha/hdf_HDFWriterBase.cpp.o' -c ../hdf/HDFWriterBase.cpp
[25/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFZMWReader.cpp.o' -MF 'blasr@sha/hdf_HDFZMWReader.cpp.o.d' -o 'blasr@sha/hdf_HDFZMWReader.cpp.o' -c ../hdf/HDFZMWReader.cpp
[26/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o' -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp
[27/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFZMWMetricsWriter.cpp.o' -MF 'blasr@sha/hdf_HDFZMWMetricsWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFZMWMetricsWriter.cpp.o' -c ../hdf/HDFZMWMetricsWriter.cpp
[28/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFUtils.cpp.o' -MF 'blasr@sha/hdf_HDFUtils.cpp.o.d' -o 'blasr@sha/hdf_HDFUtils.cpp.o' -c ../hdf/HDFUtils.cpp
[29/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o' -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp
[30/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_BaseScoreFunction.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_BaseScoreFunction.cpp.o' -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp
[31/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_AlignmentUtils.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_AlignmentUtils.cpp.o' -c ../alignment/algorithms/alignment/AlignmentUtils.cpp
[32/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/hdf_HDFZMWWriter.cpp.o' -MF 'blasr@sha/hdf_HDFZMWWriter.cpp.o.d' -o 'blasr@sha/hdf_HDFZMWWriter.cpp.o' -c ../hdf/HDFZMWWriter.cpp
[33/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_ExtendAlign.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_ExtendAlign.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_ExtendAlign.cpp.o' -c ../alignment/algorithms/alignment/ExtendAlign.cpp
[34/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_IDSScoreFunction.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_IDSScoreFunction.cpp.o' -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp
[35/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_ScoreMatrices.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_ScoreMatrices.cpp.o' -c ../alignment/algorithms/alignment/ScoreMatrices.cpp
[36/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_GuidedAlign.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_GuidedAlign.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_GuidedAlign.cpp.o' -c ../alignment/algorithms/alignment/GuidedAlign.cpp
[37/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o' -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp
[38/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_anchoring_ClusterProbability.cpp.o' -MF 'blasr@sha/alignment_algorithms_anchoring_ClusterProbability.cpp.o.d' -o 'blasr@sha/alignment_algorithms_anchoring_ClusterProbability.cpp.o' -c ../alignment/algorithms/anchoring/ClusterProbability.cpp
[39/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_anchoring_Coordinate.cpp.o' -MF 'blasr@sha/alignment_algorithms_anchoring_Coordinate.cpp.o.d' -o 'blasr@sha/alignment_algorithms_anchoring_Coordinate.cpp.o' -c ../alignment/algorithms/anchoring/Coordinate.cpp
[40/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_KBandAlign.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_KBandAlign.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_KBandAlign.cpp.o' -c ../alignment/algorithms/alignment/KBandAlign.cpp
[41/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_sorting_DifferenceCovers.cpp.o' -MF 'blasr@sha/alignment_algorithms_sorting_DifferenceCovers.cpp.o.d' -o 'blasr@sha/alignment_algorithms_sorting_DifferenceCovers.cpp.o' -c ../alignment/algorithms/sorting/DifferenceCovers.cpp
[42/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o' -MF 'blasr@sha/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d' -o 'blasr@sha/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o' -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp
[43/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_anchoring_BWTSearch.cpp.o' -MF 'blasr@sha/alignment_algorithms_anchoring_BWTSearch.cpp.o.d' -o 'blasr@sha/alignment_algorithms_anchoring_BWTSearch.cpp.o' -c ../alignment/algorithms/anchoring/BWTSearch.cpp
FAILED: blasr@sha/alignment_algorithms_anchoring_BWTSearch.cpp.o 
c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_anchoring_BWTSearch.cpp.o' -MF 'blasr@sha/alignment_algorithms_anchoring_BWTSearch.cpp.o.d' -o 'blasr@sha/alignment_algorithms_anchoring_BWTSearch.cpp.o' -c ../alignment/algorithms/anchoring/BWTSearch.cpp
In file included from ../alignment/bwt/BWT.hpp:9,
                 from ../alignment/algorithms/anchoring/BWTSearch.hpp:6,
                 from ../alignment/algorithms/anchoring/BWTSearch.cpp:1:
../alignment/suffixarray/SuffixArray.hpp: In member function ‘void SuffixArray<T, Sigma, Compare, Tuple>::LarssonBuildSuffixArray(T*, SAIndexLength, Sigma&)’:
../alignment/suffixarray/SuffixArray.hpp:288:44: error: narrowing conversion of ‘4294967295’ from ‘unsigned int’ to ‘long int’ [-Wnarrowing]
  288 |         LarssonSuffixSort<SAIndex, UINT_MAX> sorter;
      |                                            ^
../alignment/suffixarray/SuffixArray.hpp:289:84: error: ‘sorter’ cannot be used as a function
  289 |         sorter(index, p, ((SAIndex)targetLength), ((SAIndex)maxVal + 1), (SAIndex)1);
      |                                                                                    ^
[44/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_anchoring_FindMaxInterval.cpp.o' -MF 'blasr@sha/alignment_algorithms_anchoring_FindMaxInterval.cpp.o.d' -o 'blasr@sha/alignment_algorithms_anchoring_FindMaxInterval.cpp.o' -c ../alignment/algorithms/anchoring/FindMaxInterval.cpp
[45/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o' -MF 'blasr@sha/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o.d' -o 'blasr@sha/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o' -c ../alignment/algorithms/sorting/MultikeyQuicksort.cpp
[46/186] c++ -Iblasr@sha -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbseqlib-5.3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 'blasr@sha/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o' -MF 'blasr@sha/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o.d' -o 'blasr@sha/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o' -c ../alignment/algorithms/sorting/LightweightSuffixArray.cpp
ninja: build stopped: subcommand failed.
dh_auto_build: error: cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v returned exit code 1
make: *** [debian/rules:25: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-08-14T19:39:33Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 30064
Build-Time: 383
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 761
Job: pbseqlib_5.3.3+dfsg-4
Machine Architecture: armhf
Package: pbseqlib
Package-Time: 1231
Source-Version: 5.3.3+dfsg-4
Space: 30064
Status: attempted
Version: 5.3.3+dfsg-4
--------------------------------------------------------------------------------
Finished at 2020-08-14T19:39:33Z
Build needed 00:20:31, 30064k disk space