pbbam →
0.7.4+ds-1 →
armhf → 2017-02-09 16:50:32
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| pbbam 0.7.4+ds-1 (armhf) Thu, 09 Feb 2017 16:23:55 +0000 |
+==============================================================================+
Package: pbbam
Version: 0.7.4+ds-1
Source Version: 0.7.4+ds-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-01277869-cdff-4378-b87b-945cea78442e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9730 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.7 MB]
Fetched 21.4 MB in 25s (843 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pbbam' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/pbbam.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/pbbam.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 5449 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main pbbam 0.7.4+ds-1 (dsc) [2164 B]
Get:2 http://172.17.0.1/private stretch-staging/main pbbam 0.7.4+ds-1 (tar) [5441 kB]
Get:3 http://172.17.0.1/private stretch-staging/main pbbam 0.7.4+ds-1 (diff) [5904 B]
Fetched 5449 kB in 0s (8870 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbbam-ogrMn1/pbbam-0.7.4+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbbam-ogrMn1' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-dpba0L/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-dpba0L/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-dpba0L/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (2742 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 772 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13959 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-exec, cmake, python, libboost-dev (>= 1.54), zlib1g-dev, libssl-dev, libhts-dev, python-cram, samtools
Filtered Build-Depends: debhelper (>= 10), dh-exec, cmake, python, libboost-dev (>= 1.54), zlib1g-dev, libssl-dev, libhts-dev, python-cram, samtools
dpkg-deb: building package 'sbuild-build-depends-pbbam-dummy' in '/<<BUILDDIR>>/resolver-dpba0L/apt_archive/sbuild-build-depends-pbbam-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pbbam-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Sources [544 B]
Get:5 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ Packages [625 B]
Fetched 2502 B in 0s (3807 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pbbam build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libboost-dev libboost1.62-dev libbsd0 libcroco3 libcurl3 libcurl3-gnutls
libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libgnutls30
libgssapi-krb5-2 libhogweed4 libhts-dev libhts1 libicu57 libidn2-0
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnettle6
libnghttp2-14 libp11-kit0 libpipeline1 libpsl5 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl-dev libssl1.0.2 libssl1.1
libtasn1-6 libtool libunistring0 libuv1 libxml2 m4 man-db mime-support
po-debconf python python-cram python-minimal python2.7 python2.7-minimal
samtools zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libboost-doc libboost1.62-doc
libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev
libboost-coroutine1.62-dev libboost-date-time1.62-dev
libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
libboost1.62-tools-dev libmpfrc++-dev libntl-dev gnutls-bin krb5-doc
krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less
www-browser libmail-box-perl python-doc python-tk python2.7-doc
binfmt-support
Recommended packages:
curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libssl-doc
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libboost-dev libboost1.62-dev libbsd0 libcroco3 libcurl3 libcurl3-gnutls
libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libgnutls30
libgssapi-krb5-2 libhogweed4 libhts-dev libhts1 libicu57 libidn2-0
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnettle6
libnghttp2-14 libp11-kit0 libpipeline1 libpsl5 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl-dev libssl1.0.2 libssl1.1
libtasn1-6 libtool libunistring0 libuv1 libxml2 m4 man-db mime-support
po-debconf python python-cram python-minimal python2.7 python2.7-minimal
samtools sbuild-build-depends-pbbam-dummy zlib1g-dev
0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
Need to get 41.3 MB/41.7 MB of archives.
After this operation, 238 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-dpba0L/apt_archive ./ sbuild-build-depends-pbbam-dummy 0.invalid.0 [834 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf cmake-data all 3.7.2-1 [1216 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.2 [806 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.2.1-6 [252 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.15-1 [57.9 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.15-1 [115 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.15-1 [262 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.15-1 [132 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libidn2-0 armhf 0.16-1 [59.3 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.3-2 [94.4 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.10-1 [45.3 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.8-1 [823 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-2 [66.8 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-2 [98.0 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libldap-common all 2.4.44+dfsg-3 [84.5 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-3 [194 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.18.1-1 [68.0 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libpsl5 armhf 0.17.0-3 [40.8 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2k-1 [893 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.52.1-2 [259 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-2 [62.2 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libuv1 armhf 1.9.1-3 [73.2 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf cmake armhf 3.7.2-1 [2402 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-3 [221 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-3 [104 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-3 [63.2 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-2 [116 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-6 [733 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 13 [15.8 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.029-2 [15.3 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.029-2 [9330 B]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-2 [1434 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.5 [961 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [7009 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libboost-dev armhf 1.62.0.1+b1 [3918 B]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.52.1-2 [258 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libhts1 armhf 1.3.2-2+rpi1 [215 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libhts-dev armhf 1.3.2-2+rpi1 [270 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libssl-dev armhf 1.1.0c-2 [1365 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf python-cram all 0.7-1 [16.6 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf samtools armhf 1.3.1-3 [220 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf dh-exec armhf 0.23 [24.9 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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No schema files found: doing nothing.
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update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
Setting up python (2.7.13-2) ...
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Setting up samtools (1.3.1-3) ...
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Setting up dh-exec (0.23) ...
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Processing triggers for libc-bin (2.24-9) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.90.20170124-2 dpkg-dev_1.18.18 g++-6_6.3.0-5+rpi1 gcc-6_6.3.0-5+rpi1 libc6-dev_2.24-9 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.3.0-5+rpi1 libstdc++6_6.3.0-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.4~beta4 autoconf_2.69-10 automake_1:1.15-6 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_9.8+rpi1 base-passwd_3.5.43 bash_4.4-4 binutils_2.27.90.20170124-2 bsdmainutils_9.0.12 bsdutils_1:2.29.1-1 build-essential_12.3 bzip2_1.0.6-8.1 cmake_3.7.2-1 cmake-data_3.7.2-1 coreutils_8.26-2 cpio_2.11+dfsg-6 cpp_4:6.3.0-1 cpp-6_6.3.0-5+rpi1 dash_0.5.8-2.4 debconf_1.5.60 debfoster_2.7-2.1 debhelper_10.2.5 debianutils_4.8.1 dh-autoreconf_13 dh-exec_0.23 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-3 dmsetup_2:1.02.137-1 dpkg_1.18.18 dpkg-dev_1.18.18 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-3.1 file_1:5.29-3 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.3.0-1 g++-6_6.3.0-5+rpi1 gcc_4:6.3.0-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.3.0-5+rpi1 gcc-6-base_6.3.0-5+rpi1 gettext_0.19.8.1-2 gettext-base_0.19.8.1-2 gnupg_2.1.18-3 gnupg-agent_2.1.18-3 gnupg-l10n_2.1.18-3 gpgv_2.1.18-3 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init_1.47 init-system-helpers_1.47 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_23-2 libacl1_2.2.52-3 libapparmor1_2.11.0-2 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.4~beta4 libarchive-zip-perl_1.59-1 libarchive13_3.2.1-6 libasan1_4.9.3-14 libasan3_6.3.0-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.3.0-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblkid1_2.29.1-1 libboost-dev_1.62.0.1+b1 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-9 libc-dev-bin_2.24-9 libc6_2.24-9 libc6-dev_2.24-9 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.3.0-5+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-3 libcurl3_7.52.1-2 libcurl3-gnutls_7.52.1-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.220 libdevmapper1.02.1_2:1.02.137-1 libdpkg-perl_1.18.18 libdrm2_2.4.74-1 libexpat1_2.2.0-2 libfakeroot_1.21-3.1 libfdisk1_2.29.1-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.3.0-5+rpi1 libgcc1_1:6.3.0-5+rpi1 libgcrypt20_1.7.6-1 libgdbm3_1.8.3-14 libglib2.0-0_2.50.2-2 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-1 libgomp1_6.3.0-5+rpi1 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15-1 libhogweed4_3.3-1 libhts-dev_1.3.2-2+rpi1 libhts1_1.3.2-2+rpi1 libicu57_57.1-5 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0+snapshot20161117-5 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_23-2 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-3 libldap-common_2.4.44+dfsg-3 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.29-3 libmagic1_1:5.29-3 libmount1_2.29.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1 libnghttp2-14_1.18.1-1 libnpth0_1.3-1 libp11-kit0_0.23.3-2 libpam-modules_1.1.8-3.5 libpam-modules-bin_1.1.8-3.5 libpam-runtime_1.1.8-3.5 libpam0g_1.1.8-3.5 libpcre3_2:8.39-2 libperl5.24_5.24.1-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-3 libpsl5_0.17.0-3 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline7_7.0-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5 libsmartcols1_2.29.1-1 libsqlite3-0_3.16.2-2 libss2_1.43.3-1 libssh2-1_1.7.0-1 libssl-dev_1.1.0c-2 libssl1.0.2_1.0.2k-1 libssl1.1_1.1.0c-2 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.3.0-5+rpi1 libstdc++6_6.3.0-5+rpi1 libsystemd0_232-15 libtasn1-6_4.10-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libubsan0_6.3.0-5+rpi1 libudev1_232-15 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29.1-1 libuv1_1.9.1-3 libxml2_2.9.4+dfsg1-2.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-3 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.09-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.1-1 multiarch-support_2.24-9 nano_2.7.4-1 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-3 patch_2.7.5-1 perl_5.24.1-1 perl-base_5.24.1-1 perl-modules-5.24_5.24.1-1 pinentry-curses_1.0.0-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.13-2 python-cram_0.7-1 python-minimal_2.7.13-2 python2.7_2.7.13-2 python2.7-minimal_2.7.13-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-2 samtools_1.3.1-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbbam-dummy_0.invalid.0 sed_4.3-3 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-15 systemd-sysv_232-15 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-15 util-linux_2.29.1-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Jan 22 07:51:30 2017 UTC
gpgv: using RSA key 59B2306F3AF9DDC1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbbam_0.7.4+ds-1.dsc
dpkg-source: info: extracting pbbam in /<<BUILDDIR>>/pbbam-0.7.4+ds
dpkg-source: info: unpacking pbbam_0.7.4+ds.orig.tar.gz
dpkg-source: info: unpacking pbbam_0.7.4+ds-1.debian.tar.xz
dpkg-source: info: applying ssl-md5.patch
dpkg-source: info: applying remove-bam2sam.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-01277869-cdff-4378-b87b-945cea78442e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pbbam
dpkg-buildpackage: info: source version 0.7.4+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build pbbam-0.7.4+ds
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds'
dh_auto_clean
find -name "*.deb.t" -delete
rm -f -r /<<BUILDDIR>>/pbbam-0.7.4+ds/gendata
make[1]: Leaving directory '/<<BUILDDIR>>/pbbam-0.7.4+ds'
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds'
dh_auto_configure -- \
-DPacBioBAM_build_shared=ON \
-DPacBioBAM_build_tests=OFF \
-DCMAKE_LIBRARY_PATH=arm-linux-gnueabihf \
-DCMAKE_SKIP_RPATH=ON \
-DHTSLIB_INCLUDE_DIRS=/usr/include \
-DHTSLIB_LIBRARIES="-lssl -lcrypto -lhts" \
-DCMAKE_SHARED_LINKER_FLAGS="-Wl,-z,relro"
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DPacBioBAM_build_shared=ON -DPacBioBAM_build_tests=OFF -DCMAKE_LIBRARY_PATH=arm-linux-gnueabihf -DCMAKE_SKIP_RPATH=ON -DHTSLIB_INCLUDE_DIRS=/usr/include "-DHTSLIB_LIBRARIES=-lssl -lcrypto -lhts" -DCMAKE_SHARED_LINKER_FLAGS=-Wl,-z,relro
-- The CXX compiler identification is GNU 6.3.0
-- The C compiler identification is GNU 6.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS
-- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS - Success
-- Performing Test HAS_NO_SIGN_COMPARE
-- Performing Test HAS_NO_SIGN_COMPARE - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.62.0
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8")
-- Performing Test HAS_NO_UNUSED_PRIVATE_FIELD
-- Performing Test HAS_NO_UNUSED_PRIVATE_FIELD - Success
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<BUILDDIR>>/pbbam-0.7.4+ds'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/pbbam-0.7.4+ds -B/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/pbbam.dir/build.make src/CMakeFiles/pbbam.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/pbbam-0.7.4+ds /<<BUILDDIR>>/pbbam-0.7.4+ds/src /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/pbbam.dir/DependInfo.cmake --color=
Scanning dependencies of target pbbam
make[3]: Leaving directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/pbbam.dir/build.make src/CMakeFiles/pbbam.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object src/CMakeFiles/pbbam.dir/Accuracy.cpp.o
[ 2%] Building CXX object src/CMakeFiles/pbbam.dir/AlignmentPrinter.cpp.o
[ 3%] Building CXX object src/CMakeFiles/pbbam.dir/AssertUtils.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Accuracy.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Accuracy.cpp
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/AlignmentPrinter.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/AlignmentPrinter.cpp
[ 4%] Building CXX object src/CMakeFiles/pbbam.dir/BaiIndexedBamReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/AssertUtils.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/AssertUtils.cpp
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BaiIndexedBamReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BaiIndexedBamReader.cpp
[ 5%] Building CXX object src/CMakeFiles/pbbam.dir/BamFile.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamFile.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamFile.cpp
[ 6%] Building CXX object src/CMakeFiles/pbbam.dir/BamHeader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamHeader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamHeader.cpp
[ 8%] Building CXX object src/CMakeFiles/pbbam.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamReader.cpp
[ 9%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecord.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecord.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamRecord.cpp
[ 10%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecordBuilder.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecordBuilder.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamRecordBuilder.cpp
[ 11%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecordImpl.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecordImpl.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamRecordImpl.cpp
[ 12%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecordTags.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecordTags.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamRecordTags.cpp
[ 13%] Building CXX object src/CMakeFiles/pbbam.dir/BamTagCodec.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamTagCodec.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamTagCodec.cpp
[ 14%] Building CXX object src/CMakeFiles/pbbam.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamWriter.cpp
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamWriter.cpp: In member function ‘void PacBio::BAM::internal::BamWriterPrivate::Write(const PacBio::BAM::BamRecord&, int64_t*)’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamWriter.cpp:143:21: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_flush(bgzf);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamWriter.cpp: In destructor ‘PacBio::BAM::BamWriter::~BamWriter()’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/BamWriter.cpp:182:41: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_flush(d_->file_.get()->fp.bgzf);
^
[ 16%] Building CXX object src/CMakeFiles/pbbam.dir/BarcodeQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BarcodeQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/BarcodeQuery.cpp
[ 17%] Building CXX object src/CMakeFiles/pbbam.dir/ChemistryTable.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ChemistryTable.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ChemistryTable.cpp
[ 18%] Building CXX object src/CMakeFiles/pbbam.dir/Cigar.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Cigar.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Cigar.cpp
[ 19%] Building CXX object src/CMakeFiles/pbbam.dir/CigarOperation.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/CigarOperation.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/CigarOperation.cpp
[ 20%] Building CXX object src/CMakeFiles/pbbam.dir/Compare.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Compare.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Compare.cpp
[ 21%] Building CXX object src/CMakeFiles/pbbam.dir/Config.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Config.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Config.cpp
[ 22%] Building CXX object src/CMakeFiles/pbbam.dir/DataSet.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSet.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/DataSet.cpp
[ 24%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetBaseTypes.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetBaseTypes.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/DataSetBaseTypes.cpp
[ 25%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetElement.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetElement.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/DataSetElement.cpp
[ 26%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetIO.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetIO.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/DataSetIO.cpp
[ 27%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetTypes.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetTypes.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/DataSetTypes.cpp
[ 28%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetXsd.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetXsd.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/DataSetXsd.cpp
[ 29%] Building CXX object src/CMakeFiles/pbbam.dir/EntireFileQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/EntireFileQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/EntireFileQuery.cpp
[ 31%] Building CXX object src/CMakeFiles/pbbam.dir/FastaReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FastaReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/FastaReader.cpp
[ 32%] Building CXX object src/CMakeFiles/pbbam.dir/FileProducer.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FileProducer.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/FileProducer.cpp
[ 33%] Building CXX object src/CMakeFiles/pbbam.dir/FileUtils.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FileUtils.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/FileUtils.cpp
[ 34%] Building CXX object src/CMakeFiles/pbbam.dir/FofnReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FofnReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/FofnReader.cpp
[ 35%] Building CXX object src/CMakeFiles/pbbam.dir/Frames.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Frames.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Frames.cpp
[ 36%] Building CXX object src/CMakeFiles/pbbam.dir/GenomicInterval.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/GenomicInterval.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/GenomicInterval.cpp
[ 37%] Building CXX object src/CMakeFiles/pbbam.dir/GenomicIntervalQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/GenomicIntervalQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/GenomicIntervalQuery.cpp
[ 39%] Building CXX object src/CMakeFiles/pbbam.dir/IndexedFastaReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/IndexedFastaReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/IndexedFastaReader.cpp
[ 40%] Building CXX object src/CMakeFiles/pbbam.dir/IRecordWriter.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/IRecordWriter.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/IRecordWriter.cpp
[ 41%] Building CXX object src/CMakeFiles/pbbam.dir/MD5.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/MD5.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/MD5.cpp
[ 42%] Building CXX object src/CMakeFiles/pbbam.dir/MemoryUtils.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/MemoryUtils.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/MemoryUtils.cpp
[ 43%] Building CXX object src/CMakeFiles/pbbam.dir/PbiBuilder.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiBuilder.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiBuilder.cpp
[ 44%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFile.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFile.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiFile.cpp
[ 45%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFilter.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFilter.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiFilter.cpp
[ 47%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFilterQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFilterQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiFilterQuery.cpp
[ 48%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFilterTypes.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFilterTypes.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiFilterTypes.cpp
[ 49%] Building CXX object src/CMakeFiles/pbbam.dir/PbiIndex.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiIndex.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndex.cpp
[ 50%] Building CXX object src/CMakeFiles/pbbam.dir/PbiIndexedBamReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiIndexedBamReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexedBamReader.cpp
[ 51%] Building CXX object src/CMakeFiles/pbbam.dir/PbiIndexIO.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiIndexIO.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp
[ 52%] Building CXX object src/CMakeFiles/pbbam.dir/PbiRawData.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiRawData.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiRawData.cpp
[ 54%] Building CXX object src/CMakeFiles/pbbam.dir/ProgramInfo.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ProgramInfo.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ProgramInfo.cpp
[ 55%] Building CXX object src/CMakeFiles/pbbam.dir/QNameQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/QNameQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/QNameQuery.cpp
[ 56%] Building CXX object src/CMakeFiles/pbbam.dir/QualityValue.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/QualityValue.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/QualityValue.cpp
In file included from /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector<T>&, uint32_t) [with T = short int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &data[0], numReads*sizeof(T));
^~~~~~~~~
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector<T>&, uint32_t) [with T = signed char]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadHeader(PacBio::BAM::PbiRawData&, BGZF*)’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:237:46: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &version, sizeof(version));
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:238:47: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, §ions, sizeof(sections));
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:239:47: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &numReads, sizeof(numReads));
^
In file included from /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector<T>&, uint32_t) [with T = int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &data[0], numReads*sizeof(T));
^~~~~~~~~
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector<T>&, uint32_t) [with T = unsigned int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector<T>&, uint32_t) [with T = unsigned char]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadReferenceData(PacBio::BAM::PbiRawReferenceData&, BGZF*)’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:293:31: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &numRefs, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:302:43: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &entry.tId_, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:303:43: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &entry.beginRow_, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:304:43: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &entry.endRow_, 4);
^
In file included from /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector<T>&, uint32_t) [with T = float]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_read(fp, &data[0], numReads*sizeof(T));
^~~~~~~~~
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector<T>&, uint32_t) [with T = long long int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector<T>&) [with T = short int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &output[0], data.size()*sizeof(T));
^~~~~~~~~~
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector<T>&) [with T = signed char]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteHeader(const PacBio::BAM::PbiRawData&, BGZF*)’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:380:29: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, magic, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:391:34: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &version, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:392:34: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &pbi_flags, 2);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:393:34: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &numReads, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:398:33: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, reserved, 18);
^
In file included from /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector<T>&) [with T = int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &output[0], data.size()*sizeof(T));
^~~~~~~~~~
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector<T>&) [with T = unsigned int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector<T>&) [with T = unsigned char]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteReferenceData(const PacBio::BAM::PbiRawReferenceData&, BGZF*)’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:434:32: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &numRefs, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:448:37: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &tId, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:449:37: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &beginRow, 4);
^
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:450:37: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &endRow, 4);
^
In file included from /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector<T>&) [with T = float]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
bgzf_write(fp, &output[0], data.size()*sizeof(T));
^~~~~~~~~~
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector<T>&) [with T = long long int]’:
/<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
[ 57%] Building CXX object src/CMakeFiles/pbbam.dir/ReadAccuracyQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ReadAccuracyQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ReadAccuracyQuery.cpp
[ 58%] Building CXX object src/CMakeFiles/pbbam.dir/ReadGroupInfo.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ReadGroupInfo.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ReadGroupInfo.cpp
[ 59%] Building CXX object src/CMakeFiles/pbbam.dir/SamTagCodec.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SamTagCodec.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/SamTagCodec.cpp
[ 60%] Building CXX object src/CMakeFiles/pbbam.dir/SamWriter.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SamWriter.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/SamWriter.cpp
[ 62%] Building CXX object src/CMakeFiles/pbbam.dir/SequenceInfo.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SequenceInfo.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/SequenceInfo.cpp
[ 63%] Building CXX object src/CMakeFiles/pbbam.dir/SubreadLengthQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SubreadLengthQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/SubreadLengthQuery.cpp
[ 64%] Building CXX object src/CMakeFiles/pbbam.dir/Tag.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Tag.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Tag.cpp
[ 65%] Building CXX object src/CMakeFiles/pbbam.dir/TagCollection.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/TagCollection.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/TagCollection.cpp
[ 66%] Building CXX object src/CMakeFiles/pbbam.dir/Validator.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Validator.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Validator.cpp
[ 67%] Building CXX object src/CMakeFiles/pbbam.dir/ValidationErrors.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ValidationErrors.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ValidationErrors.cpp
[ 68%] Building CXX object src/CMakeFiles/pbbam.dir/ValidationException.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ValidationException.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ValidationException.cpp
[ 70%] Building CXX object src/CMakeFiles/pbbam.dir/Version.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Version.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/Version.cpp
[ 71%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualZmwBamRecord.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualZmwBamRecord.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/VirtualZmwBamRecord.cpp
[ 72%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualZmwCompositeReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualZmwCompositeReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/VirtualZmwCompositeReader.cpp
[ 73%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualZmwReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualZmwReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/VirtualZmwReader.cpp
[ 74%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualRegionTypeMap.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualRegionTypeMap.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/VirtualRegionTypeMap.cpp
[ 75%] Building CXX object src/CMakeFiles/pbbam.dir/XmlReader.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/XmlReader.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/XmlReader.cpp
[ 77%] Building CXX object src/CMakeFiles/pbbam.dir/XmlWriter.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/XmlWriter.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/XmlWriter.cpp
[ 78%] Building CXX object src/CMakeFiles/pbbam.dir/WhitelistedZmwReadStitcher.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/WhitelistedZmwReadStitcher.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/WhitelistedZmwReadStitcher.cpp
[ 79%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwGroupQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwGroupQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ZmwGroupQuery.cpp
[ 80%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwReadStitcher.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwReadStitcher.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ZmwReadStitcher.cpp
[ 81%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwQuery.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwQuery.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ZmwQuery.cpp
[ 82%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwTypeMap.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwTypeMap.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/ZmwTypeMap.cpp
[ 83%] Building CXX object src/CMakeFiles/pbbam.dir/pugixml/pugixml.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/pugixml/pugixml.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/src/pugixml/pugixml.cpp
[ 85%] Linking CXX shared library ../lib/libpbbam.so
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbbam.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wl,-z,relro -shared -Wl,-soname,libpbbam.so -o ../lib/libpbbam.so CMakeFiles/pbbam.dir/Accuracy.cpp.o CMakeFiles/pbbam.dir/AlignmentPrinter.cpp.o CMakeFiles/pbbam.dir/AssertUtils.cpp.o CMakeFiles/pbbam.dir/BaiIndexedBamReader.cpp.o CMakeFiles/pbbam.dir/BamFile.cpp.o CMakeFiles/pbbam.dir/BamHeader.cpp.o CMakeFiles/pbbam.dir/BamReader.cpp.o CMakeFiles/pbbam.dir/BamRecord.cpp.o CMakeFiles/pbbam.dir/BamRecordBuilder.cpp.o CMakeFiles/pbbam.dir/BamRecordImpl.cpp.o CMakeFiles/pbbam.dir/BamRecordTags.cpp.o CMakeFiles/pbbam.dir/BamTagCodec.cpp.o CMakeFiles/pbbam.dir/BamWriter.cpp.o CMakeFiles/pbbam.dir/BarcodeQuery.cpp.o CMakeFiles/pbbam.dir/ChemistryTable.cpp.o CMakeFiles/pbbam.dir/Cigar.cpp.o CMakeFiles/pbbam.dir/CigarOperation.cpp.o CMakeFiles/pbbam.dir/Compare.cpp.o CMakeFiles/pbbam.dir/Config.cpp.o CMakeFiles/pbbam.dir/DataSet.cpp.o CMakeFiles/pbbam.dir/DataSetBaseTypes.cpp.o CMakeFiles/pbbam.dir/DataSetElement.cpp.o CMakeFiles/pbbam.dir/DataSetIO.cpp.o CMakeFiles/pbbam.dir/DataSetTypes.cpp.o CMakeFiles/pbbam.dir/DataSetXsd.cpp.o CMakeFiles/pbbam.dir/EntireFileQuery.cpp.o CMakeFiles/pbbam.dir/FastaReader.cpp.o CMakeFiles/pbbam.dir/FileProducer.cpp.o CMakeFiles/pbbam.dir/FileUtils.cpp.o CMakeFiles/pbbam.dir/FofnReader.cpp.o CMakeFiles/pbbam.dir/Frames.cpp.o CMakeFiles/pbbam.dir/GenomicInterval.cpp.o CMakeFiles/pbbam.dir/GenomicIntervalQuery.cpp.o CMakeFiles/pbbam.dir/IndexedFastaReader.cpp.o CMakeFiles/pbbam.dir/IRecordWriter.cpp.o CMakeFiles/pbbam.dir/MD5.cpp.o CMakeFiles/pbbam.dir/MemoryUtils.cpp.o CMakeFiles/pbbam.dir/PbiBuilder.cpp.o CMakeFiles/pbbam.dir/PbiFile.cpp.o CMakeFiles/pbbam.dir/PbiFilter.cpp.o CMakeFiles/pbbam.dir/PbiFilterQuery.cpp.o CMakeFiles/pbbam.dir/PbiFilterTypes.cpp.o CMakeFiles/pbbam.dir/PbiIndex.cpp.o CMakeFiles/pbbam.dir/PbiIndexedBamReader.cpp.o CMakeFiles/pbbam.dir/PbiIndexIO.cpp.o CMakeFiles/pbbam.dir/PbiRawData.cpp.o CMakeFiles/pbbam.dir/ProgramInfo.cpp.o CMakeFiles/pbbam.dir/QNameQuery.cpp.o CMakeFiles/pbbam.dir/QualityValue.cpp.o CMakeFiles/pbbam.dir/ReadAccuracyQuery.cpp.o CMakeFiles/pbbam.dir/ReadGroupInfo.cpp.o CMakeFiles/pbbam.dir/SamTagCodec.cpp.o CMakeFiles/pbbam.dir/SamWriter.cpp.o CMakeFiles/pbbam.dir/SequenceInfo.cpp.o CMakeFiles/pbbam.dir/SubreadLengthQuery.cpp.o CMakeFiles/pbbam.dir/Tag.cpp.o CMakeFiles/pbbam.dir/TagCollection.cpp.o CMakeFiles/pbbam.dir/Validator.cpp.o CMakeFiles/pbbam.dir/ValidationErrors.cpp.o CMakeFiles/pbbam.dir/ValidationException.cpp.o CMakeFiles/pbbam.dir/Version.cpp.o CMakeFiles/pbbam.dir/VirtualZmwBamRecord.cpp.o CMakeFiles/pbbam.dir/VirtualZmwCompositeReader.cpp.o CMakeFiles/pbbam.dir/VirtualZmwReader.cpp.o CMakeFiles/pbbam.dir/VirtualRegionTypeMap.cpp.o CMakeFiles/pbbam.dir/XmlReader.cpp.o CMakeFiles/pbbam.dir/XmlWriter.cpp.o CMakeFiles/pbbam.dir/WhitelistedZmwReadStitcher.cpp.o CMakeFiles/pbbam.dir/ZmwGroupQuery.cpp.o CMakeFiles/pbbam.dir/ZmwReadStitcher.cpp.o CMakeFiles/pbbam.dir/ZmwQuery.cpp.o CMakeFiles/pbbam.dir/ZmwTypeMap.cpp.o CMakeFiles/pbbam.dir/pugixml/pugixml.cpp.o -lssl -lcrypto -lhts -lz -lpthread
make[3]: Leaving directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
[ 85%] Built target pbbam
make -f tools/pbindex/CMakeFiles/pbindex.dir/build.make tools/pbindex/CMakeFiles/pbindex.dir/depend
make -f tools/pbindexdump/CMakeFiles/pbindexdump.dir/build.make tools/pbindexdump/CMakeFiles/pbindexdump.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/pbbam-0.7.4+ds /<<BUILDDIR>>/pbbam-0.7.4+ds/tools/pbindex /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/tools/pbindex /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/tools/pbindex/CMakeFiles/pbindex.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/pbbam-0.7.4+ds /<<BUILDDIR>>/pbbam-0.7.4+ds/tools/pbmerge /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/tools/pbmerge /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/tools/pbmerge/CMakeFiles/pbmerge.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/pbbam-0.7.4+ds /<<BUILDDIR>>/pbbam-0.7.4+ds/tools/pbindexdump /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/tools/pbindexdump /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/tools/pbindexdump/CMakeFiles/pbindexdump.dir/DependInfo.cmake --color=
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Scanning dependencies of target pbindexdump
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make -f tools/pbindexdump/CMakeFiles/pbindexdump.dir/build.make tools/pbindexdump/CMakeFiles/pbindexdump.dir/build
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make[3]: Entering directory '/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf'
[ 86%] Building CXX object tools/pbindex/CMakeFiles/pbindex.dir/__/common/OptionParser.cpp.o
[ 87%] Building CXX object tools/pbindex/CMakeFiles/pbindex.dir/src/main.cpp.o
cd /<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/tools/pbindex && /usr/bin/c++ -I/<<BUILDDIR>>/pbbam-0.7.4+ds/tools/common -I/<<BUILDDIR>>/pbbam-0.7.4+ds/obj-arm-linux-gnueabihf/generated -I/<<BUILDDIR>>/pbbam-0.7.4+ds/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -std=gnu++11 -o CMakeFiles/pbindex.dir/__/common/OptionParser.cpp.o -c /<<BUILDDIR>>/pbbam-0.7.4+ds/tools/common/OptionParser.cpp
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -Wl,-z,relro CMakeFiles/pbindexdump.dir/__/common/OptionParser.cpp.o CMakeFiles/pbindexdump.dir/src/CppFormatter.cpp.o CMakeFiles/pbindexdump.dir/src/JsonFormatter.cpp.o CMakeFiles/pbindexdump.dir/src/PbIndexDump.cpp.o CMakeFiles/pbindexdump.dir/src/main.cpp.o -o ../../bin/pbindexdump -rdynamic ../../lib/libpbbam.so -lssl -lcrypto -lhts -lz -lpthread
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debian/rules override_dh_auto_test
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sed \
-e 's/$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/tests|g' \
-e 's|@PacBioBAM_VERSION@|0.7.4|g' \
-e 's|@GeneratedTestDataDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata|g' \
tests/src/cram/pbmerge_pacbio_ordering.t.in > tests/src/cram/pbmerge_pacbio_ordering.deb.t
sed \
-e 's/$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/tests|g' \
-e 's|@PacBioBAM_VERSION@|0.7.4|g' \
-e 's|@GeneratedTestDataDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata|g' \
tests/src/cram/pbmerge_mixed_ordering.t.in > tests/src/cram/pbmerge_mixed_ordering.deb.t
sed \
-e 's/$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/tests|g' \
-e 's|@PacBioBAM_VERSION@|0.7.4|g' \
-e 's|@GeneratedTestDataDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata|g' \
tests/src/cram/pbmerge_aligned_ordering.t.in > tests/src/cram/pbmerge_aligned_ordering.deb.t
sed \
-e 's/$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/tests|g' \
-e 's|@PacBioBAM_VERSION@|0.7.4|g' \
-e 's|@GeneratedTestDataDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata|g' \
tests/src/cram/pbindexdump_json.t.in > tests/src/cram/pbindexdump_json.deb.t
sed \
-e 's/$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/tests|g' \
-e 's|@PacBioBAM_VERSION@|0.7.4|g' \
-e 's|@GeneratedTestDataDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata|g' \
tests/src/cram/pbindexdump_cpp.t.in > tests/src/cram/pbindexdump_cpp.deb.t
sed \
-e 's/$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/tests|g' \
-e 's|@PacBioBAM_VERSION@|0.7.4|g' \
-e 's|@GeneratedTestDataDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata|g' \
tests/src/cram/pbmerge_fofn.t.in > tests/src/cram/pbmerge_fofn.deb.t
sed \
-e 's/$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/tests|g' \
-e 's|@PacBioBAM_VERSION@|0.7.4|g' \
-e 's|@GeneratedTestDataDir@|/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata|g' \
tests/src/cram/pbmerge_dataset.t.in > tests/src/cram/pbmerge_dataset.deb.t
mkdir -p /<<BUILDDIR>>/pbbam-0.7.4+ds/gendata
python tests/scripts/generate_data.py /<<BUILDDIR>>/pbbam-0.7.4+ds/tests/data /<<BUILDDIR>>/pbbam-0.7.4+ds/gendata
Generating test data in /<<BUILDDIR>>/pbbam-0.7.4+ds/gendata
- Creating file: truncated.bam...done.
- Creating file: normal.fa...done.
- Creating file: chunking_missingfilters.subreadset.xml...done.
- Creating file: chunking_emptyfilters.subreadset.xml...done.
- Creating symlink: missing_pbi.bam...done.
- Creating symlink: aligned.bam.bai...done.
- Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi...done.
- Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam...done.
- Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam...done.
- Creating symlink: aligned2.bam.pbi...done.
- Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi...done.
- Creating symlink: aligned2.bam.bai...done.
- Creating symlink: aligned2.bam...done.
- Creating symlink: aligned.bam...done.
- Creating symlink: aligned.bam.pbi...done.
- Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi...done.
- Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam...done.
BINDIR=`find $PWD -name bin -type d`; \
LIBDIR=`find $PWD -name lib -type d`; \
PATH="$BINDIR:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" LD_LIBRARY_PATH="$LIBDIR:" \
cram -v tests/src/cram/pbmerge_pacbio_ordering.deb.t tests/src/cram/pbmerge_mixed_ordering.deb.t tests/src/cram/pbmerge_aligned_ordering.deb.t tests/src/cram/pbindexdump_json.deb.t tests/src/cram/pbindexdump_cpp.deb.t tests/src/cram/pbmerge_fofn.deb.t tests/src/cram/pbmerge_dataset.deb.t
tests/src/cram/pbmerge_pacbio_ordering.deb.t: passed
tests/src/cram/pbmerge_mixed_ordering.deb.t: passed
tests/src/cram/pbmerge_aligned_ordering.deb.t: failed
--- tests/src/cram/pbmerge_aligned_ordering.deb.t
+++ tests/src/cram/pbmerge_aligned_ordering.deb.t.err
@@ -122,41 +122,28 @@
Explicit Output Filename (also enables PBI):
$ $PBMERGE -o $MERGED_BAM $INPUT_1 $INPUT_2
+ pbmerge: /<<BUILDDIR>>/pbbam-0.7.4+ds/src/PbiBuilder.cpp:327: bool PacBio::BAM::internal::PbiBuilderPrivate::HasBarcodeData() const: Assertion `bcForward.size() == rawData_.NumReads()' failed.
+ Aborted
+ [134]
$ samtools view -H $MERGED_BAM
- @HD\tVN:1.3.1\tSO:coordinate\tpb:3.0.1 (esc)
- @SQ\tSN:lambda_NEB3011\tLN:48502\tM5:a1319ff90e994c8190a4fe6569d0822a (esc)
- @RG\tID:a9a22406c5\tPL:PACBIO\tDS:READTYPE=SUBREAD;DeletionQV=dq;DeletionTag=dt;InsertionQV=iq;MergeQV=mq;SubstitutionQV=sq;SubstitutionTag=st;BINDINGKIT=100356300;SEQUENCINGKIT=100356200;BASECALLERVERSION=2.3\tPU:m140905_042212_sidney_c100564852550000001823085912221377_s1_X0\tSM:c100564852550000001823085912221377\tPM:SEQUEL (esc)
- @PG\tID:BLASR\tVN:1.3.1.141565\tCL:/home/UNIXHOME/yli/for_the_people/blasr_bam_out/blasr m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.1.bax.h5 lambdaNEB.fa -out tmp.bam -bam -bestn 10 -minMatch 12 -nproc 8 -minSubreadLength 50 -minReadLength 50 -randomSeed 1 -clipping subread (esc)
- @PG\tID:pbmerge-0.7.4\tPN:pbmerge\tVN:0.7.4 (esc)
+ [E::hts_open_format] fail to open file '/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata/aligned_ordering_merged.bam'
+ samtools view: failed to open "/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata/aligned_ordering_merged.bam" for reading: No such file or directory
+ [1]
$ samtools view $MERGED_BAM | cut -f 1,3,4 | head -n 20
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/49050/48_1132\tlambda_NEB3011\t1 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/32328/387_1134\tlambda_NEB3011\t303 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/32328/0_344\tlambda_NEB3011\t676 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/6469/9936_10187\tlambda_NEB3011\t2171 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/6469/9936_10187\tlambda_NEB3011\t2171 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/6469/10232_10394\tlambda_NEB3011\t2204 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/6469/10232_10394\tlambda_NEB3011\t2204 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/30983/7468_8906\tlambda_NEB3011\t3573 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/30983/7468_8906\tlambda_NEB3011\t3573 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/13473/5557_7235\tlambda_NEB3011\t4507 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/13473/5557_7235\tlambda_NEB3011\t4507 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/13473/7285_8657\tlambda_NEB3011\t4508 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/13473/7285_8657\tlambda_NEB3011\t4508 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/19915/426_1045\tlambda_NEB3011\t4593 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/19915/426_1045\tlambda_NEB3011\t4593 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/30983/7064_7421\tlambda_NEB3011\t4670 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/30983/7064_7421\tlambda_NEB3011\t4670 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/19915/0_382\tlambda_NEB3011\t4843 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/19915/0_382\tlambda_NEB3011\t4843 (esc)
- m140905_042212_sidney_c100564852550000001823085912221377_s1_X0/7247/7338_7831\tlambda_NEB3011\t4904 (esc)
+ [E::hts_open_format] fail to open file '/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata/aligned_ordering_merged.bam'
+ samtools view: failed to open "/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata/aligned_ordering_merged.bam" for reading: No such file or directory
$ [ -f $MERGED_BAM_PBI ] && echo "Found" || echo "Not found"
- Found
+ Not found
$ rm $MERGED_BAM
+ rm: cannot remove '/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata/aligned_ordering_merged.bam': No such file or directory
+ [1]
$ rm $MERGED_BAM_PBI
+ rm: cannot remove '/<<BUILDDIR>>/pbbam-0.7.4+ds/gendata/aligned_ordering_merged.bam.pbi': No such file or directory
+ [1]
Explicit Output Filename (with disabled PBI):
tests/src/cram/pbindexdump_json.deb.t: passed
tests/src/cram/pbindexdump_cpp.deb.t: passed
tests/src/cram/pbmerge_fofn.deb.t: passed
tests/src/cram/pbmerge_dataset.deb.t: passed
# Ran 7 tests, 0 skipped, 1 failed.
debian/rules:26: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/pbbam-0.7.4+ds'
debian/rules:11: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 2017-02-09T16:49:59Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 1043
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 469
Job: pbbam_0.7.4+ds-1
Machine Architecture: armhf
Package: pbbam
Package-Time: 1564
Source-Version: 0.7.4+ds-1
Space: 0
Status: failed
Version: 0.7.4+ds-1
--------------------------------------------------------------------------------
Finished at 2017-02-09T16:49:59Z
Build needed 00:00:00, 0k disc space