packmol →
20.010-1 →
armhf → 2020-01-25 05:48:56
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| packmol 20.010-1 (armhf) Sat, 25 Jan 2020 05:42:00 +0000 |
+==============================================================================+
Package: packmol
Version: 20.010-1
Source Version: 20.010-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-e3f7a6f5-3b87-48c6-9bc8-075f340431d2' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.3 MB in 11s (2256 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'packmol' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/packmol.git
Please use:
git clone https://salsa.debian.org/debichem-team/packmol.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 175 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main packmol 20.010-1 (dsc) [1918 B]
Get:2 http://172.17.0.1/private bullseye-staging/main packmol 20.010-1 (tar) [171 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main packmol 20.010-1 (diff) [2660 B]
Fetched 175 kB in 0s (1202 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/packmol-H5DMg3/packmol-20.010' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/packmol-H5DMg3' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gb6vNB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gb6vNB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gb6vNB/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (8019 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12207 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), cmake, gfortran
Filtered Build-Depends: debhelper-compat (= 12), cmake, gfortran
dpkg-deb: building package 'sbuild-build-depends-packmol-dummy' in '/<<BUILDDIR>>/resolver-gb6vNB/apt_archive/sbuild-build-depends-packmol-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-packmol-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Sources [501 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ Packages [582 B]
Fetched 2416 B in 0s (9308 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install packmol build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base gfortran gfortran-9 groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libbsd0 libcroco3
libcurl3-gnutls libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0
libgssapi-krb5-2 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libmagic-mgc libmagic1 libncurses6 libnghttp2-14
libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1
libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0 libuv1 libxml2
m4 man-db po-debconf procps sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev groff lrzip
krb5-doc krb5-user libtool-doc gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base gfortran gfortran-9 groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libbsd0 libcroco3
libcurl3-gnutls libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0
libgssapi-krb5-2 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libmagic-mgc libmagic1 libncurses6 libnghttp2-14
libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1
libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0 libuv1 libxml2
m4 man-db po-debconf procps sbuild-build-depends-packmol-dummy
sensible-utils
0 upgraded, 62 newly installed, 0 to remove and 2 not upgraded.
Need to get 35.2 MB of archives.
After this operation, 124 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gb6vNB/apt_archive ./ sbuild-build-depends-packmol-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-3 [262 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-3 [112 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-3 [66.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.15.4-1+rpi1 [1580 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.0-1+b1 [292 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.33.1-2 [112 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.15.4-1+rpi1 [2540 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.3 [174 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.3 [1019 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-22+rpi1 [230 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.2.1-22+rpi1 [279 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.2.1-22+rpi1 [8092 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3.1+rpi1 [1440 B]
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Setting up libk5crypto3:armhf (1.17-6+b1) ...
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Setting up librhash0:armhf (1.3.9-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
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update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
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Setting up m4 (1.4.18-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:9.2.1-3.1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up cmake (3.15.4-1+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.3) ...
Setting up sbuild-build-depends-packmol-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.15.4-1+rpi1 cmake-data_3.15.4-1+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-3 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1+rpi1 gfortran-9_9.2.1-22+rpi1 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-22+rpi1 libgfortran5_9.2.1-22+rpi1 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-3 libmagic1_1:5.38-3 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.33.1-2 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-packmol-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 20 02:55:29 2020 UTC
gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./packmol_20.010-1.dsc
dpkg-source: info: extracting packmol in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking packmol_20.010.orig.tar.gz
dpkg-source: info: unpacking packmol_20.010-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-e3f7a6f5-3b87-48c6-9bc8-075f340431d2
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package packmol
dpkg-buildpackage: info: source version 20.010-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem=cmake
dh_auto_clean -O--buildsystem=cmake
dh_autoreconf_clean -O--buildsystem=cmake
dh_clean -O--buildsystem=cmake
debian/rules build-arch
dh build-arch --buildsystem=cmake
dh_update_autotools_config -a -O--buildsystem=cmake
dh_autoreconf -a -O--buildsystem=cmake
dh_auto_configure -a -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The Fortran compiler identification is GNU 9.2.1
-- Check for working Fortran compiler: /usr/bin/f95
-- Check for working Fortran compiler: /usr/bin/f95 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/f95 supports Fortran 90
-- Checking whether /usr/bin/f95 supports Fortran 90 -- yes
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/packmol.dir/DependInfo.cmake --color=
Scanning dependencies of target packmol
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/packmol.dir/build.make CMakeFiles/packmol.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 5%] Building Fortran object CMakeFiles/packmol.dir/ahestetic.f90.o
[ 5%] Building Fortran object CMakeFiles/packmol.dir/sizes.f90.o
[ 7%] Building Fortran object CMakeFiles/packmol.dir/swaptypemod.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/sizes.f90 -o CMakeFiles/packmol.dir/sizes.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/ahestetic.f90 -o CMakeFiles/packmol.dir/ahestetic.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/swaptypemod.f90 -o CMakeFiles/packmol.dir/swaptypemod.f90.o
[ 10%] Building Fortran object CMakeFiles/packmol.dir/gencan.f.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/gencan.f -o CMakeFiles/packmol.dir/gencan.f.o
f951: Warning: Nonconforming tab character in column 1 of line 2193 [-Wtabs]
[ 13%] Building Fortran object CMakeFiles/packmol.dir/strlength.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/strlength.f90 -o CMakeFiles/packmol.dir/strlength.f90.o
[ 15%] Building Fortran object CMakeFiles/packmol.dir/setibox.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/setibox.f90 -o CMakeFiles/packmol.dir/setibox.f90.o
[ 18%] Building Fortran object CMakeFiles/packmol.dir/flashsort.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/flashsort.f90 -o CMakeFiles/packmol.dir/flashsort.f90.o
[ 21%] Building Fortran object CMakeFiles/packmol.dir/jacobi.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/jacobi.f90 -o CMakeFiles/packmol.dir/jacobi.f90.o
[ 23%] Building Fortran object CMakeFiles/packmol.dir/random.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/random.f90 -o CMakeFiles/packmol.dir/random.f90.o
/<<PKGBUILDDIR>>/gencan.f:5672:72:
5672 | 95 SUM = SUM + DX(J)**2
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 95 at (1)
/<<PKGBUILDDIR>>/gencan.f:2574:5:
2574 | 1003 format(6X,I6,T22,D17.6,T43,D17.6)
| 1
Warning: Label 1003 at (1) defined but not used [-Wunused-label]
/<<PKGBUILDDIR>>/gencan.f:5662:5:
5662 | 110 IF (DABS(DX(I)).LE.XMAX) GO TO 115
| 1
Warning: Label 110 at (1) defined but not used [-Wunused-label]
/<<PKGBUILDDIR>>/gencan.f:5661:5:
5661 | 70 IF (DABS(DX(I)).GT.CUTLO) GO TO 75
| 1
Warning: Label 70 at (1) defined but not used [-Wunused-label]
/<<PKGBUILDDIR>>/gencan.f:5654:5:
5654 | 50 IF (DX(I).EQ.ZERO) GO TO 200
| 1
Warning: Label 50 at (1) defined but not used [-Wunused-label]
/<<PKGBUILDDIR>>/gencan.f:5652:5:
5652 | 30 IF (DABS(DX(I)).GT.CUTLO) GO TO 85
| 1
Warning: Label 30 at (1) defined but not used [-Wunused-label]
/<<PKGBUILDDIR>>/gencan.f:62:37:
62 | subroutine evalnal(n,x,m,lambda,rho,g,flag)
| 1
Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:62:41:
62 | subroutine evalnal(n,x,m,lambda,rho,g,flag)
| 1
Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:2585:40:
2585 | +steabs,epsrel,epsabs,infrel,infabs)
| 1
Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:2585:33:
2585 | +steabs,epsrel,epsabs,infrel,infabs)
| 1
Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:2585:12:
2585 | +steabs,epsrel,epsabs,infrel,infabs)
| 1
Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:2584:71:
2584 | +fmin,maxfc,iprint,fcnt,inform,xtrial,d,gamma,sigma1,sigma2,sterel,
| 1
Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument]
/usr/bin/cmake -E cmake_copy_f90_mod ahestetic.mod CMakeFiles/packmol.dir/ahestetic.mod.stamp GNU
/<<PKGBUILDDIR>>/gencan.f:3819:61:
3819 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs)
| 1
Warning: Unused dummy argument 'infabs' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:3819:54:
3819 | +sigma1,sigma2,sterel,steabs,epsrel,epsabs,infrel,infabs)
| 1
Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:4:36:
4 | subroutine evalal(n,x,m,lambda,rho,f,flag)
| 1
Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:4:40:
4 | subroutine evalal(n,x,m,lambda,rho,f,flag)
| 1
Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:2981:19:
2981 | +epsabs,infrel,infabs)
| 1
Warning: Unused dummy argument 'infrel' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:5179:19:
5179 | +steabs,inform)
| 1
Warning: Unused dummy argument 'inform' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:5178:52:
5178 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel,
| 1
Warning: Unused dummy argument 'lambda' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:5178:56:
5178 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel,
| 1
Warning: Unused dummy argument 'rho' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:5179:12:
5179 | +steabs,inform)
| 1
Warning: Unused dummy argument 'steabs' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:5178:71:
5178 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel,
| 1
Warning: Unused dummy argument 'sterel' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:5178:64:
5178 | subroutine calchd(nind,ind,x,d,g,n,xc,m,lambda,rho,hd,xtmp,sterel,
| 1
Warning: Unused dummy argument 'xtmp' at (1) [-Wunused-dummy-argument]
/<<PKGBUILDDIR>>/gencan.f:125:25:
125 | subroutine evalhd(n)
| 1
Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument]
/usr/bin/cmake -E cmake_copy_f90_mod sizes.mod CMakeFiles/packmol.dir/sizes.mod.stamp GNU
/usr/bin/cmake -E cmake_copy_f90_mod swaptypemod.mod CMakeFiles/packmol.dir/swaptypemod.mod.stamp GNU
[ 26%] Building Fortran object CMakeFiles/packmol.dir/usegencan.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/usegencan.f90 -o CMakeFiles/packmol.dir/usegencan.f90.o
[ 28%] Building Fortran object CMakeFiles/packmol.dir/title.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/title.f90 -o CMakeFiles/packmol.dir/title.f90.o
[ 31%] Building Fortran object CMakeFiles/packmol.dir/comparegrad.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/comparegrad.f90 -o CMakeFiles/packmol.dir/comparegrad.f90.o
/usr/bin/cmake -E touch CMakeFiles/packmol.dir/ahestetic.f90.o.provides.build
[ 34%] Building Fortran object CMakeFiles/packmol.dir/compute_data.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/compute_data.f90 -o CMakeFiles/packmol.dir/compute_data.f90.o
[ 36%] Building Fortran object CMakeFiles/packmol.dir/flashmod.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/flashmod.f90 -o CMakeFiles/packmol.dir/flashmod.f90.o
[ 39%] Building Fortran object CMakeFiles/packmol.dir/input.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/input.f90 -o CMakeFiles/packmol.dir/input.f90.o
/usr/bin/cmake -E touch CMakeFiles/packmol.dir/sizes.f90.o.provides.build
/usr/bin/cmake -E touch CMakeFiles/packmol.dir/swaptypemod.f90.o.provides.build
/usr/bin/cmake -E cmake_copy_f90_mod usegencan.mod CMakeFiles/packmol.dir/usegencan.mod.stamp GNU
/usr/bin/cmake -E cmake_copy_f90_mod compute_data.mod CMakeFiles/packmol.dir/compute_data.mod.stamp GNU
/usr/bin/cmake -E cmake_copy_f90_mod flashsort.mod CMakeFiles/packmol.dir/flashsort.mod.stamp GNU
/usr/bin/cmake -E cmake_copy_f90_mod input.mod CMakeFiles/packmol.dir/input.mod.stamp GNU
/usr/bin/cmake -E touch CMakeFiles/packmol.dir/usegencan.f90.o.provides.build
[ 42%] Building Fortran object CMakeFiles/packmol.dir/fparc.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/fparc.f90 -o CMakeFiles/packmol.dir/fparc.f90.o
[ 44%] Building Fortran object CMakeFiles/packmol.dir/gwalls.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/gwalls.f90 -o CMakeFiles/packmol.dir/gwalls.f90.o
[ 47%] Building Fortran object CMakeFiles/packmol.dir/gparc.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/gparc.f90 -o CMakeFiles/packmol.dir/gparc.f90.o
[ 50%] Building Fortran object CMakeFiles/packmol.dir/comprest.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/comprest.f90 -o CMakeFiles/packmol.dir/comprest.f90.o
[ 52%] Building Fortran object CMakeFiles/packmol.dir/packmol.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/packmol.f90 -o CMakeFiles/packmol.dir/packmol.f90.o
[ 55%] Building Fortran object CMakeFiles/packmol.dir/polartocart.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/polartocart.f90 -o CMakeFiles/packmol.dir/polartocart.f90.o
[ 57%] Building Fortran object CMakeFiles/packmol.dir/resetboxes.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/resetboxes.f90 -o CMakeFiles/packmol.dir/resetboxes.f90.o
[ 60%] Building Fortran object CMakeFiles/packmol.dir/tobar.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/tobar.f90 -o CMakeFiles/packmol.dir/tobar.f90.o
[ 63%] Building Fortran object CMakeFiles/packmol.dir/setijk.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/setijk.f90 -o CMakeFiles/packmol.dir/setijk.f90.o
[ 68%] Building Fortran object CMakeFiles/packmol.dir/swaptype.f90.o
[ 68%] Building Fortran object CMakeFiles/packmol.dir/restmol.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/swaptype.f90 -o CMakeFiles/packmol.dir/swaptype.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/restmol.f90 -o CMakeFiles/packmol.dir/restmol.f90.o
[ 71%] Building Fortran object CMakeFiles/packmol.dir/heuristics.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/heuristics.f90 -o CMakeFiles/packmol.dir/heuristics.f90.o
[ 73%] Building Fortran object CMakeFiles/packmol.dir/computef.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/computef.f90 -o CMakeFiles/packmol.dir/computef.f90.o
/<<PKGBUILDDIR>>/packmol.f90:810:0:
810 | if(flast.gt.0.d0) fimp = -100.d0 * (fx - flast) / flast
|
Warning: 'flast' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/packmol.f90:321:0:
321 | iratom(icart,iratcount) = iirest
|
Warning: 'iirest' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 76%] Building Fortran object CMakeFiles/packmol.dir/computeg.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/computeg.f90 -o CMakeFiles/packmol.dir/computeg.f90.o
/usr/bin/cmake -E touch CMakeFiles/packmol.dir/compute_data.f90.o.provides.build
/usr/bin/cmake -E touch CMakeFiles/packmol.dir/flashmod.f90.o.provides.build
/usr/bin/cmake -E touch CMakeFiles/packmol.dir/input.f90.o.provides.build
[ 78%] Building Fortran object CMakeFiles/packmol.dir/cenmass.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/cenmass.f90 -o CMakeFiles/packmol.dir/cenmass.f90.o
/<<PKGBUILDDIR>>/gencan.f:3346:0:
3346 | beta = rnorm2 / rnorm2prev
|
Warning: 'rnorm2prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3644:0:
3644 | rbdtype = rbdposatype
|
Warning: 'rbdposatype' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3643:0:
3643 | rbdind = rbdposaind
|
Warning: 'rbdposaind' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3647:0:
3647 | rbdtype = rbdnegatype
|
Warning: 'rbdnegatype' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3646:0:
3646 | rbdind = rbdnegaind
|
Warning: 'rbdnegaind' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3353:0:
3353 | + beta ** 2 * dnorm2
|
Warning: 'dtw' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3353:0: Warning: 'dtr' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3353:0: Warning: 'dnorm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3235:0:
3235 | double precision aa,alpha,amax,amax1,amax1n,amaxn,amax2,amax2n,
|
Warning: 'amax1n' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3494:0:
3494 | amax = min( amax1 , amax2 )
|
Warning: 'amax1' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:3353:0:
3353 | + beta ** 2 * dnorm2
|
Warning: 'alpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 81%] Building Fortran object CMakeFiles/packmol.dir/pgencan.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/pgencan.f90 -o CMakeFiles/packmol.dir/pgencan.f90.o
[ 84%] Building Fortran object CMakeFiles/packmol.dir/initial.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/initial.f90 -o CMakeFiles/packmol.dir/initial.f90.o
[ 86%] Building Fortran object CMakeFiles/packmol.dir/setsizes.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/setsizes.f90 -o CMakeFiles/packmol.dir/setsizes.f90.o
/<<PKGBUILDDIR>>/gencan.f:2074:0:
2074 | lamspg = sts / sty
|
Warning: 'sty' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/gencan.f:2137:0:
2137 | delta = max( delmin, 10.0d0 * sqrt( sts ) )
|
Warning: 'sts' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 89%] Building Fortran object CMakeFiles/packmol.dir/getinp.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/getinp.f90 -o CMakeFiles/packmol.dir/getinp.f90.o
/<<PKGBUILDDIR>>/getinp.f90:887:0:
887 | if(ires.ne.ireslast) then
|
Warning: 'ireslast' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 92%] Building Fortran object CMakeFiles/packmol.dir/output.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/output.f90 -o CMakeFiles/packmol.dir/output.f90.o
[ 94%] Building Fortran object CMakeFiles/packmol.dir/checkpoint.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/checkpoint.f90 -o CMakeFiles/packmol.dir/checkpoint.f90.o
[ 97%] Building Fortran object CMakeFiles/packmol.dir/writesuccess.f90.o
/usr/bin/f95 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wall -c /<<PKGBUILDDIR>>/writesuccess.f90 -o CMakeFiles/packmol.dir/writesuccess.f90.o
/<<PKGBUILDDIR>>/output.f90:581:0:
581 | nres = ilres - ifres + 1
|
Warning: 'ilres' may be used uninitialized in this function [-Wmaybe-uninitialized]
[100%] Linking Fortran executable packmol
/usr/bin/cmake -E cmake_link_script CMakeFiles/packmol.dir/link.txt --verbose=1
/usr/bin/f95 -Wl,-z,relro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong CMakeFiles/packmol.dir/cenmass.f90.o CMakeFiles/packmol.dir/gencan.f.o CMakeFiles/packmol.dir/pgencan.f90.o CMakeFiles/packmol.dir/initial.f90.o CMakeFiles/packmol.dir/title.f90.o CMakeFiles/packmol.dir/setsizes.f90.o CMakeFiles/packmol.dir/getinp.f90.o CMakeFiles/packmol.dir/strlength.f90.o CMakeFiles/packmol.dir/output.f90.o CMakeFiles/packmol.dir/checkpoint.f90.o CMakeFiles/packmol.dir/writesuccess.f90.o CMakeFiles/packmol.dir/fparc.f90.o CMakeFiles/packmol.dir/gparc.f90.o CMakeFiles/packmol.dir/gwalls.f90.o CMakeFiles/packmol.dir/comprest.f90.o CMakeFiles/packmol.dir/comparegrad.f90.o CMakeFiles/packmol.dir/packmol.f90.o CMakeFiles/packmol.dir/polartocart.f90.o CMakeFiles/packmol.dir/resetboxes.f90.o CMakeFiles/packmol.dir/tobar.f90.o CMakeFiles/packmol.dir/setijk.f90.o CMakeFiles/packmol.dir/setibox.f90.o CMakeFiles/packmol.dir/restmol.f90.o CMakeFiles/packmol.dir/swaptype.f90.o CMakeFiles/packmol.dir/swaptypemod.f90.o CMakeFiles/packmol.dir/ahestetic.f90.o CMakeFiles/packmol.dir/heuristics.f90.o CMakeFiles/packmol.dir/flashsort.f90.o CMakeFiles/packmol.dir/jacobi.f90.o CMakeFiles/packmol.dir/random.f90.o CMakeFiles/packmol.dir/sizes.f90.o CMakeFiles/packmol.dir/usegencan.f90.o CMakeFiles/packmol.dir/compute_data.f90.o CMakeFiles/packmol.dir/flashmod.f90.o CMakeFiles/packmol.dir/computef.f90.o CMakeFiles/packmol.dir/computeg.f90.o CMakeFiles/packmol.dir/input.f90.o -o packmol
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target packmol
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/packmol AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/packmol.dir/DependInfo.cmake --color=
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dpkg-deb: building package 'packmol-dbgsym' in '../packmol-dbgsym_20.010-1_armhf.deb'.
dpkg-deb: building package 'packmol' in '../packmol_20.010-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../packmol_20.010-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
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Build finished at 2020-01-25T05:48:54Z
Finished
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I: Built successfully
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| Changes |
+------------------------------------------------------------------------------+
packmol_20.010-1_armhf.changes:
-------------------------------
Format: 1.8
Date: Mon, 20 Jan 2020 10:49:33 +0800
Source: packmol
Binary: packmol packmol-dbgsym
Architecture: armhf
Version: 20.010-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Drew Parsons <dparsons@debian.org>
Description:
packmol - Initial configurations for Molecular Dynamics Simulations
Changes:
packmol (20.010-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
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fb724e48c2ffa5eba4d6b380382ff79dca6ae267 93956 packmol_20.010-1_armhf.deb
Checksums-Sha256:
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Files:
bd38e49b579bd0aba1018382931e9cc2 101340 debug optional packmol-dbgsym_20.010-1_armhf.deb
df0298fd3f19aca97c0f98733e564f2a 5692 science optional packmol_20.010-1_armhf.buildinfo
2b44ef4c9a6ea20478878b38576061bc 93956 science optional packmol_20.010-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
packmol-dbgsym_20.010-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 101340 bytes: control archive=524 bytes.
354 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: packmol-dbgsym
Source: packmol
Version: 20.010-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 121
Depends: packmol (= 20.010-1)
Section: debug
Priority: optional
Description: debug symbols for packmol
Build-Ids: 64374b0cd916518e480e55c06c61d53bebd8cc20
drwxr-xr-x root/root 0 2020-01-20 02:49 ./
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/lib/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/lib/debug/.build-id/64/
-rw-r--r-- root/root 113208 2020-01-20 02:49 ./usr/lib/debug/.build-id/64/374b0cd916518e480e55c06c61d53bebd8cc20.debug
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/share/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-01-20 02:49 ./usr/share/doc/packmol-dbgsym -> packmol
packmol_20.010-1_armhf.deb
--------------------------
new Debian package, version 2.0.
size 93956 bytes: control archive=1416 bytes.
1903 bytes, 47 lines control
446 bytes, 7 lines md5sums
Package: packmol
Version: 20.010-1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 359
Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.5), libgfortran5 (>= 8)
Recommends: tcl
Section: science
Priority: optional
Homepage: http://m3g.iqm.unicamp.br/packmol/
Description: Initial configurations for Molecular Dynamics Simulations
Initial configurations for Molecular Dynamics Simulations by packing
optimization.
.
Packmol creates an initial point for molecular dynamics simulations by
packing molecules in defined regions of space. The packing guarantees
that short range repulsive interactions do not disrupt the
simulations.
.
The great variety of types of spatial constraints that can be
attributed to the molecules, or atoms within the molecules, makes it
easy to create ordered systems, such as lamellar, spherical or tubular
lipid layers.
.
The user must provide only the coordinates of one molecule of each
type, the number of molecules of each type and the spatial constraints
that each type of molecule must satisfy.
.
The package is compatible with input files of PDB, TINKER, XYZ and
MOLDY formats.
.
See http://m3g.iqm.unicamp.br/packmol for more information.
.
References
.
Please always cite one of the following references in publications for
which Packmol was useful:
.
L Martinez, R Andrade, EG Birgin, JM Martinez, Packmol: A package for
building initial configurations for molecular dynamics simulations.
Journal of Computational Chemistry, 30, 2157-2164, 2009.
(http://www3.interscience.wiley.com/journal/122210103/abstract)
.
JM Martinez, L Martinez, Packing optimization for the automated
generation of complex system's initial configurations for molecular
dynamics and docking. Journal of Computational Chemistry, 24, 819-825,
2003. (http://www3.interscience.wiley.com/journal/104086246/abstract)
drwxr-xr-x root/root 0 2020-01-20 02:49 ./
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/bin/
-rwxr-xr-x root/root 218784 2020-01-20 02:49 ./usr/bin/packmol
-rwxr-xr-x root/root 131594 2020-01-10 23:38 ./usr/bin/solvate.tcl
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/share/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/share/doc/packmol/
-rw-r--r-- root/root 471 2020-01-10 23:38 ./usr/share/doc/packmol/AUTHORS
-rw-r--r-- root/root 1719 2020-01-10 23:38 ./usr/share/doc/packmol/README.md
-rw-r--r-- root/root 256 2020-01-20 02:49 ./usr/share/doc/packmol/changelog.Debian.gz
-rw-r--r-- root/root 1974 2020-01-20 02:49 ./usr/share/doc/packmol/copyright
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/share/lintian/
drwxr-xr-x root/root 0 2020-01-20 02:49 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 51 2020-01-20 02:49 ./usr/share/lintian/overrides/packmol
+------------------------------------------------------------------------------+
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 3152
Build-Time: 27
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 367
Job: packmol_20.010-1
Machine Architecture: armhf
Package: packmol
Package-Time: 414
Source-Version: 20.010-1
Space: 3152
Status: successful
Version: 20.010-1
--------------------------------------------------------------------------------
Finished at 2020-01-25T05:48:54Z
Build needed 00:06:54, 3152k disk space