ngmlr →
0.2.7+git20210816.a2a31fb+dfsg-2 →
armhf → 2021-10-16 08:30:37
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+================================================================================+
| ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (armhf) Sat, 16 Oct 2021 08:22:40 +0000 |
+================================================================================+
Package: ngmlr
Version: 0.2.7+git20210816.a2a31fb+dfsg-2
Source Version: 0.2.7+git20210816.a2a31fb+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-8dd902a8-deb4-4907-9bfe-a0d2c11ee090' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/ngmlr-VUGQVp/resolver-rwxHGp' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 10s (2551 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ngmlr' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ngmlr.git
Please use:
git clone https://salsa.debian.org/med-team/ngmlr.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 678 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (dsc) [2209 B]
Get:2 http://172.17.0.1/private bookworm-staging/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (tar) [668 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (diff) [8084 B]
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I: NOTICE: Log filtering will replace 'build/ngmlr-VUGQVp/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ngmlr-VUGQVp' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [402 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [483 B]
Fetched 1842 B in 0s (49.0 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz
emacsen-common file gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1
libexpat1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2
libicu67 libjsoncpp24 liblzma-dev libmagic-mgc libmagic1 libncurses6
libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2
libsimde-dev libssh2-1 libssw-dev libssw0 libsub-override-perl libtclap-dev
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev pkg-config liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz
emacsen-common file gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libelf1
libexpat1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2
libicu67 libjsoncpp24 liblzma-dev libmagic-mgc libmagic1 libncurses6
libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2
libsimde-dev libssh2-1 libssw-dev libssw0 libsub-override-perl libtclap-dev
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sbuild-build-depends-main-dummy sensible-utils zlib1g-dev
0 upgraded, 63 newly installed, 0 to remove and 35 not upgraded.
Need to get 38.9 MB of archives.
After this operation, 132 MB of additional disk space will be used.
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Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
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Get:13 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
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Get:17 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
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Get:25 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-5 [67.4 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.42.0-1 [121 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.9 [11.2 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf cmake-data all 3.21.3-4 [1878 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf cmake armhf 3.21.3-4 [3468 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.74.0-1.3 [375 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libdeflate-dev armhf 1.8-1 [40.4 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-3 [49.8 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libhts-dev armhf 1.13+ds-2 [4049 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libsimde-dev all 0.7.2-5 [259 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libssw0 armhf 1.1-13 [21.0 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libssw-dev armhf 1.1-13 [24.0 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libtclap-dev armhf 1.2.4-3 [7868 kB]
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Setting up libhtscodecs2:armhf (1.1.1-3) ...
Setting up libexpat1:armhf (2.4.1-2) ...
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Setting up libsimde-dev (0.7.2-5) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-3) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libuv1:armhf (1.42.0-1) ...
Setting up emacsen-common (3.0.4) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up dh-elpa-helper (2.0.9) ...
Setting up libncurses6:armhf (6.2+20201114-4) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up libtclap-dev (1.2.4-3) ...
Setting up libjsoncpp24:armhf (1.9.4-5) ...
Setting up liblzma-dev:armhf (5.2.5-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up librhash0:armhf (1.4.2-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up cmake-data (3.21.3-4) ...
Setting up libdeflate-dev:armhf (1.8-1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libssw0:armhf (1.1-13) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libprocps8:armhf (2:3.3.17-5) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libssw-dev:armhf (1.1-13) ...
Setting up libtool (2.4.6-15) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1.3) ...
Setting up libcurl4-gnutls-dev:armhf (7.74.0-1.3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up procps (2:3.3.17-5) ...
Setting up libcurl4:armhf (7.74.0-1.3) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.13+ds-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhts-dev:armhf (1.13+ds-2) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up cmake (3.21.3-4) ...
Setting up debhelper (13.5.2) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 cmake_3.21.3-4 cmake-data_3.21.3-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-elpa-helper_2.0.9 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 emacsen-common_3.0.4 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4_7.74.0-1.3 libcurl4-gnutls-dev_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate-dev_1.8-1 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libreadline8_8.1-2 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-5 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtclap-dev_1.2.4-3 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libuv1_1.42.0-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: ngmlr
Binary: ngmlr
Architecture: any
Version: 0.2.7+git20210816.a2a31fb+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <nilesh@debian.org>
Homepage: https://github.com/philres/ngmlr
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/ngmlr
Vcs-Git: https://salsa.debian.org/med-team/ngmlr.git
Testsuite: autopkgtest
Testsuite-Triggers: bedtools, samtools
Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev
Package-List:
ngmlr deb science optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.trcD8eqA/trustedkeys.kbx': General error
gpgv: Signature made Thu Oct 14 12:22:50 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc
dpkg-source: info: extracting ngmlr in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz
dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-system-libs.patch
dpkg-source: info: applying spellings.patch
dpkg-source: info: applying simde.patch
dpkg-source: info: applying VarArgsDefines.patch
dpkg-source: info: applying AlignmentBuffer_noMatch.patch
dpkg-source: info: applying fix-arm64.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=359bbe4d259442eb9d8f94db1683c24a
JOURNAL_STREAM=8:21869
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-8dd902a8-deb4-4907-9bfe-a0d2c11ee090
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c9011
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package ngmlr
dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -rf bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=cmake
dh_clean -O--buildsystem=cmake
debian/rules binary-arch
dh binary-arch --buildsystem cmake
dh_update_autotools_config -a -O--buildsystem=cmake
dh_autoreconf -a -O--buildsystem=cmake
dh_auto_configure -a -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Performing Test COMPILER_SUPPORTS_CXX11
-- Performing Test COMPILER_SUPPORTS_CXX11 - Success
CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend
make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/recompile_always.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/ngmlr.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && touch /<<PKGBUILDDIR>>/src/main.cpp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 0%] Built target recompile_always
[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o
[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o
[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /<<PKGBUILDDIR>>/src/AlignmentMatrix.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /<<PKGBUILDDIR>>/src/AlignmentMatrixFast.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -MF CMakeFiles/ngmlr.dir/ArgParser.cpp.o.d -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /<<PKGBUILDDIR>>/src/ArgParser.cpp
[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /<<PKGBUILDDIR>>/src/CS.cpp
[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /<<PKGBUILDDIR>>/src/CSstatic.cpp
[ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /<<PKGBUILDDIR>>/src/ConvexAlign.cpp
[ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /<<PKGBUILDDIR>>/src/ConvexAlignFast.cpp
[ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /<<PKGBUILDDIR>>/src/LinearRegression.cpp
[ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /<<PKGBUILDDIR>>/src/Logging.cpp
[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /<<PKGBUILDDIR>>/src/MappedRead.cpp
[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
/<<PKGBUILDDIR>>/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’:
/<<PKGBUILDDIR>>/src/Logging.cpp:118:27: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=]
118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min,
| ^~~~
/<<PKGBUILDDIR>>/src/Logging.cpp:118:22: note: directive argument in the range [-2147483647, 2147483647]
118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:866,
from /<<PKGBUILDDIR>>/src/Logging.cpp:7:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:38:34: note: ‘__builtin___sprintf_chk’ output between 20 and 72 bytes into a destination of size 20
38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
39 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/main.cpp:56:146: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str());
| ^
/<<PKGBUILDDIR>>/src/main.cpp:56:101: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str());
| ^~~~~~~~
[ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /<<PKGBUILDDIR>>/src/NGM.cpp
[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /<<PKGBUILDDIR>>/src/NGMTask.cpp
[ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /<<PKGBUILDDIR>>/src/AlignmentBuffer.cpp
[ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /<<PKGBUILDDIR>>/src/PrefixTable.cpp
[ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /<<PKGBUILDDIR>>/src/ReadProvider.cpp
[ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /<<PKGBUILDDIR>>/src/SamParser.cpp
[ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /<<PKGBUILDDIR>>/src/SAMWriter.cpp
[ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /<<PKGBUILDDIR>>/src/SequenceProvider.cpp
[ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /<<PKGBUILDDIR>>/src/OutputReadBuffer.cpp
/<<PKGBUILDDIR>>/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’:
/<<PKGBUILDDIR>>/src/OutputReadBuffer.cpp:17:3: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
17 | throw "Elements left in buffer!";
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/OutputReadBuffer.cpp:17:3: note: in C++11 destructors default to ‘noexcept’
[ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /<<PKGBUILDDIR>>/src/ScoreBuffer.cpp
In file included from /usr/include/c++/10/map:60,
from /<<PKGBUILDDIR>>/src/SequenceProvider.h:9,
from /<<PKGBUILDDIR>>/src/SequenceProvider.cpp:5:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, _SequenceProvider::RefIdx>; _KeyOfValue = std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, _SequenceProvider::RefIdx> >]’:
/usr/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, _SequenceProvider::RefIdx>, std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >, std::less<int>, std::allocator<std::pair<const int, _SequenceProvider::RefIdx> > >::const_iterator’ changed in GCC 7.1
2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<PKGBUILDDIR>>/src/SequenceProvider.h:9,
from /<<PKGBUILDDIR>>/src/SequenceProvider.cpp:5:
/usr/include/c++/10/bits/stl_map.h: In member function ‘virtual void _SequenceProvider::Init(bool)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, _SequenceProvider::RefIdx>, std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >, std::less<int>, std::allocator<std::pair<const int, _SequenceProvider::RefIdx> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, _SequenceProvider::RefIdx>, std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >, std::less<int>, std::allocator<std::pair<const int, _SequenceProvider::RefIdx> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, _SequenceProvider::RefIdx>, std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >, std::less<int>, std::allocator<std::pair<const int, _SequenceProvider::RefIdx> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, _SequenceProvider::RefIdx>, std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >, std::less<int>, std::allocator<std::pair<const int, _SequenceProvider::RefIdx> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, _SequenceProvider::RefIdx>, std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >, std::less<int>, std::allocator<std::pair<const int, _SequenceProvider::RefIdx> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, _SequenceProvider::RefIdx>, std::_Select1st<std::pair<const int, _SequenceProvider::RefIdx> >, std::less<int>, std::allocator<std::pair<const int, _SequenceProvider::RefIdx> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /<<PKGBUILDDIR>>/src/StrippedSW.cpp
[ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /<<PKGBUILDDIR>>/src/unix.cpp
[ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/<<PKGBUILDDIR>>/src/../lib -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /<<PKGBUILDDIR>>/src/unix_threads.cpp
In file included from /usr/include/c++/10/map:60,
from /<<PKGBUILDDIR>>/src/unix.cpp:17:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<const char*, long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > >]’:
/usr/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<PKGBUILDDIR>>/src/unix.cpp:17:
/usr/include/c++/10/bits/stl_map.h: In function ‘const int CreateMapping(const char*, const char*&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In function ‘uloc GetMapLength(int)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In function ‘void Remap(int, const char*&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In function ‘void CloseMapping(int)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, std::pair<const char*, long long unsigned int> >, std::_Select1st<std::pair<const int, std::pair<const char*, long long unsigned int> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<const char*, long long unsigned int> > > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[100%] Linking CXX executable ../../bin/ngmlr-0.2.8/ngmlr
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o ../../bin/ngmlr-0.2.8/ngmlr -lz -lpthread -lssw
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target ngmlr
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a -O--buildsystem=cmake
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=cmake
dh_prep -a -O--buildsystem=cmake
dh_auto_install --destdir=debian/ngmlr/ -a -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/ngmlr/usr/bin/ngmlr
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_installdocs -a -O--buildsystem=cmake
dh_installchangelogs -a -O--buildsystem=cmake
dh_installexamples -a -O--buildsystem=cmake
dh_installman -a -O--buildsystem=cmake
dh_installsystemduser -a -O--buildsystem=cmake
dh_perl -a -O--buildsystem=cmake
dh_link -a -O--buildsystem=cmake
dh_strip_nondeterminism -a -O--buildsystem=cmake
dh_compress -a -O--buildsystem=cmake
dh_fixperms -a -O--buildsystem=cmake
dh_missing -a -O--buildsystem=cmake
dh_dwz -a -O--buildsystem=cmake
dh_strip -a -O--buildsystem=cmake
dh_makeshlibs -a -O--buildsystem=cmake
dh_shlibdeps -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: debian/ngmlr/usr/bin/ngmlr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ngmlr/usr/bin/ngmlr was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=cmake
dh_gencontrol -a -O--buildsystem=cmake
dh_md5sums -a -O--buildsystem=cmake
dh_builddeb -a -O--buildsystem=cmake
dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb'.
dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-16T08:30:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.changes:
-----------------------------------------------------
Format: 1.8
Date: Thu, 14 Oct 2021 17:34:16 +0530
Source: ngmlr
Binary: ngmlr ngmlr-dbgsym
Architecture: armhf
Version: 0.2.7+git20210816.a2a31fb+dfsg-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
ngmlr - CoNvex Gap-cost alignMents for Long Reads
Changes:
ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2) unstable; urgency=medium
.
* Add patch to fix arm build
* d/control: Remove Pranav from uploaders (not active)
* d/t/run-unit-test: diff with -u flag
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 16 Oct 2021 08:30:31 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.4-2),
autopoint (= 0.21-4),
autotools-dev (= 20180224.1+nmu1),
base-files (= 12+rpi1),
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bash (= 5.1-3),
binutils (= 2.37-5+rpi1),
binutils-arm-linux-gnueabihf (= 2.37-5+rpi1),
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bsdextrautils (= 2.37.2-3),
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cmake-data (= 3.21.3-4),
coreutils (= 8.32-4),
cpp (= 4:10.2.1-1+rpi1),
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dash (= 0.5.11+git20210120+802ebd4-1),
debconf (= 1.5.77),
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debianutils (= 4.11.2),
dh-autoreconf (= 20),
dh-elpa-helper (= 2.0.9),
dh-strip-nondeterminism (= 1.12.0-1),
diffutils (= 1:3.7-5),
dpkg (= 1.20.9+rpi1),
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dwz (= 0.14-1),
emacsen-common (= 3.0.4),
file (= 1:5.39-3),
findutils (= 4.8.0-1),
g++ (= 4:10.2.1-1+rpi1),
g++-10 (= 10.3.0-9+rpi1),
gcc (= 4:10.2.1-1+rpi1),
gcc-10 (= 10.3.0-9+rpi1),
gcc-10-base (= 10.3.0-9+rpi1),
gcc-11-base (= 11.2.0-4+rpi1),
gettext (= 0.21-4),
gettext-base (= 0.21-4),
grep (= 3.7-1),
groff-base (= 1.22.4-7),
gzip (= 1.10-4),
hostname (= 3.23),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libarchive-zip-perl (= 1.68-1),
libarchive13 (= 3.4.3-2),
libasan6 (= 11.2.0-4+rpi1),
libatomic1 (= 11.2.0-4+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.5-1),
libaudit1 (= 1:3.0.5-1),
libbinutils (= 2.37-5+rpi1),
libblkid1 (= 2.37.2-1),
libbrotli1 (= 1.0.9-2+b1),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.32-4+rpi1),
libc-dev-bin (= 2.32-4+rpi1),
libc6 (= 2.32-4+rpi1),
libc6-dev (= 2.32-4+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcc1-0 (= 11.2.0-4+rpi1),
libcom-err2 (= 1.46.4-1),
libcrypt-dev (= 1:4.4.25-2),
libcrypt1 (= 1:4.4.25-2),
libctf-nobfd0 (= 2.37-5+rpi1),
libctf0 (= 2.37-5+rpi1),
libcurl3-gnutls (= 7.74.0-1.3),
libcurl4 (= 7.74.0-1.3),
libcurl4-gnutls-dev (= 7.74.0-1.3),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdebconfclient0 (= 0.260),
libdebhelper-perl (= 13.5.2),
libdeflate-dev (= 1.8-1),
libdeflate0 (= 1.8-1),
libdpkg-perl (= 1.20.9+rpi1),
libelf1 (= 0.185-2),
libexpat1 (= 2.4.1-2),
libffi7 (= 3.3-6),
libfile-stripnondeterminism-perl (= 1.12.0-1),
libgcc-10-dev (= 10.3.0-9+rpi1),
libgcc-s1 (= 11.2.0-4+rpi1),
libgcrypt20 (= 1.9.4-3),
libgdbm-compat4 (= 1.21-1),
libgdbm6 (= 1.21-1),
libgmp10 (= 2:6.2.1+dfsg-2),
libgnutls30 (= 3.7.2-2),
libgomp1 (= 11.2.0-4+rpi1),
libgpg-error0 (= 1.42-3),
libgssapi-krb5-2 (= 1.18.3-7),
libhogweed6 (= 3.7.3-1),
libhts-dev (= 1.13+ds-2),
libhts3 (= 1.13+ds-2),
libhtscodecs2 (= 1.1.1-3),
libicu67 (= 67.1-7),
libidn2-0 (= 2.3.2-2),
libisl23 (= 0.23-1),
libjsoncpp24 (= 1.9.4-5),
libk5crypto3 (= 1.18.3-7),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-7),
libkrb5support0 (= 1.18.3-7),
libldap-2.4-2 (= 2.4.59+dfsg-1),
liblz4-1 (= 1.9.3-2),
liblzma-dev (= 5.2.5-2),
liblzma5 (= 5.2.5-2),
libmagic-mgc (= 1:5.39-3),
libmagic1 (= 1:5.39-3),
libmount1 (= 2.37.2-1),
libmpc3 (= 1.2.0-1),
libmpfr6 (= 4.1.0-3),
libncurses6 (= 6.2+20201114-4),
libncursesw6 (= 6.2+20201114-4),
libnettle8 (= 3.7.3-1),
libnghttp2-14 (= 1.43.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.24.0-2),
libpam-modules (= 1.4.0-10),
libpam-modules-bin (= 1.4.0-10),
libpam-runtime (= 1.4.0-10),
libpam0g (= 1.4.0-10),
libpcre2-8-0 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.1-5),
libpipeline1 (= 1.5.3-1),
libprocps8 (= 2:3.3.17-5),
libpsl5 (= 0.21.0-1.2),
librhash0 (= 1.4.2-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2.1),
libsasl2-modules-db (= 2.1.27+dfsg-2.1),
libseccomp2 (= 2.5.1-1+rpi1),
libselinux1 (= 3.1-3),
libsigsegv2 (= 2.13-1),
libsimde-dev (= 0.7.2-5),
libsmartcols1 (= 2.37.2-1),
libssh2-1 (= 1.10.0-2),
libssl1.1 (= 1.1.1l-1),
libssw-dev (= 1.1-13),
libssw0 (= 1.1-13),
libstdc++-10-dev (= 10.3.0-9+rpi1),
libstdc++6 (= 11.2.0-4+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 247.9-1+rpi1),
libtasn1-6 (= 4.17.0-2),
libtclap-dev (= 1.2.4-3),
libtinfo6 (= 6.2+20201114-4),
libtirpc-common (= 1.3.2-2),
libtirpc-dev (= 1.3.2-2),
libtirpc3 (= 1.3.2-2),
libtool (= 2.4.6-15),
libubsan1 (= 11.2.0-4+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 247.9-1+rpi1),
libunistring2 (= 0.9.10-6),
libuuid1 (= 2.37.2-1),
libuv1 (= 1.42.0-1),
libxml2 (= 2.9.12+dfsg-5),
libzstd1 (= 1.4.8+dfsg-2.1+rpi1),
linux-libc-dev (= 5.10.46-4+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4.1),
man-db (= 2.9.4-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20201114-4),
ncurses-bin (= 6.2+20201114-4),
patch (= 2.7.6-7),
perl (= 5.32.1-5),
perl-base (= 5.32.1-5),
perl-modules-5.32 (= 5.32.1-5),
po-debconf (= 1.0.21+nmu1),
procps (= 2:3.3.17-5),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sysvinit-utils (= 3.00-1),
tar (= 1.34+dfsg-1),
util-linux (= 2.37.2-1),
xz-utils (= 5.2.5-2),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1634213056"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb
-------------------------------------------------------
new Debian package, version 2.0.
size 1238868 bytes: control archive=552 bytes.
413 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: ngmlr-dbgsym
Source: ngmlr
Version: 0.2.7+git20210816.a2a31fb+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1309
Depends: ngmlr (= 0.2.7+git20210816.a2a31fb+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for ngmlr
Build-Ids: c7c5d74d7c275128262ed631dce3548276a03f3d
drwxr-xr-x root/root 0 2021-10-14 12:04 ./
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/lib/debug/.build-id/c7/
-rw-r--r-- root/root 1330080 2021-10-14 12:04 ./usr/lib/debug/.build-id/c7/c5d74d7c275128262ed631dce3548276a03f3d.debug
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-14 12:04 ./usr/share/doc/ngmlr-dbgsym -> ngmlr
ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_armhf.deb
------------------------------------------------
new Debian package, version 2.0.
size 649420 bytes: control archive=1692 bytes.
971 bytes, 18 lines control
2474 bytes, 31 lines md5sums
Package: ngmlr
Version: 0.2.7+git20210816.a2a31fb+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1071
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libssw0 (>= 1.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/philres/ngmlr
Description: CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or
Oxford Nanopore to (large) reference genomes. It was designed to quickly
and correctly align the reads, including those spanning (complex)
structural variations. Ngmlr uses an SV aware k-mer search to find
approximate mapping locations for a read and then a banded Smith-
Waterman alignment algorithm to compute the final alignment. Ngmlr uses
a convex gap cost model that penalizes gap extensions for longer gaps
less than for shorter ones to compute precise alignments.
drwxr-xr-x root/root 0 2021-10-14 12:04 ./
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/bin/
-rwxr-xr-x root/root 357972 2021-10-14 12:04 ./usr/bin/ngmlr
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/ngmlr/
-rw-r--r-- root/root 3255 2021-08-16 04:02 ./usr/share/doc/ngmlr/README.md.gz
-rw-r--r-- root/root 357 2021-10-08 16:22 ./usr/share/doc/ngmlr/README.source
-rw-r--r-- root/root 278 2021-10-08 16:22 ./usr/share/doc/ngmlr/README.test
-rw-r--r-- root/root 896 2021-10-14 12:04 ./usr/share/doc/ngmlr/changelog.Debian.gz
-rw-r--r-- root/root 1554 2021-10-08 16:22 ./usr/share/doc/ngmlr/copyright
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/
drwxr-xr-x root/root 0 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/
drwxr-xr-x root/root 0 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_1/
-rw-r--r-- root/root 1269 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_1/expected.txt
-rw-r--r-- root/root 13342 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_1/long_name.fa
-rw-r--r-- root/root 139688 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_1/ref_chr6_140kb.fa
drwxr-xr-x root/root 0 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_2/
-rw-r--r-- root/root 333 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_2/expected.bed
-rw-r--r-- root/root 10671 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_2/reads_100_2200bp.fa
-rw-r--r-- root/root 19654 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_2/ref_chr21_20kb.fa
-rw-r--r-- root/root 333 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_2/result.bed
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_3/
-rw-r--r-- root/root 414906 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_3/read.fa.gz
-rw-r--r-- root/root 37532 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_3/reference.fasta.gz
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_4/
-rw-r--r-- root/root 70 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/data/test_4/expected.txt
-rw-r--r-- root/root 3999 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_4/read.fa.gz
-rw-r--r-- root/root 37532 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_4/reference.fasta.gz
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_5/
-rw-r--r-- root/root 3978 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_5/read.fa.gz
-rw-r--r-- root/root 4729 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_5/reference.fasta.gz
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_6/
-rw-r--r-- root/root 442 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_6/read.fa.gz
-rw-r--r-- root/root 3034 2021-10-14 12:04 ./usr/share/doc/ngmlr/examples/data/test_6/reference.fasta.gz
-rwxr-xr-x root/root 641 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/test_1.sh
-rwxr-xr-x root/root 676 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/test_2.sh
-rwxr-xr-x root/root 999 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/test_3.sh
-rwxr-xr-x root/root 711 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/test_4.sh
-rwxr-xr-x root/root 610 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/test_5.sh
-rwxr-xr-x root/root 619 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/test_6.sh
-rwxr-xr-x root/root 198 2021-08-16 04:02 ./usr/share/doc/ngmlr/examples/test_travis.sh
-rw-r--r-- root/root 1867 2021-10-14 12:04 ./usr/share/doc/ngmlr/run-unit-test
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2021-10-14 12:04 ./usr/share/man/man1/
-rw-r--r-- root/root 1670 2021-10-14 12:04 ./usr/share/man/man1/ngmlr.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 19356
Build-Time: 55
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 390
Job: ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2
Machine Architecture: armhf
Package: ngmlr
Package-Time: 472
Source-Version: 0.2.7+git20210816.a2a31fb+dfsg-2
Space: 19356
Status: successful
Version: 0.2.7+git20210816.a2a31fb+dfsg-2
--------------------------------------------------------------------------------
Finished at 2021-10-16T08:30:32Z
Build needed 00:07:52, 19356k disk space