Build log for ncbi-tools6 (6.1.20120620-5) on armhf

ncbi-tools6 → 6.1.20120620-5 → armhf → 2013-09-12 21:45:05

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testwandboard

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║ ncbi-tools6 6.1.20120620-5 (armhf)                         12 Sep 2013 20:03 ║
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Package: ncbi-tools6
Version: 6.1.20120620-5
Source Version: 6.1.20120620-5
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/ncbi-tools6-9uTcSJ/ncbi-tools6-6.1.20120620' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-9uTcSJ' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-59e90c92-ee11-4d9b-b688-b6d5018a4d38' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6834 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7955 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
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│ Fetch source files                                                           │
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Reading package lists...
Building dependency tree...
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NOTICE: 'ncbi-tools6' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/ncbi-tools6.git
Need to get 68.6 MB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main ncbi-tools6 6.1.20120620-5 (dsc) [2637 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main ncbi-tools6 6.1.20120620-5 (tar) [68.4 MB]
Get:3 http://172.17.0.1/private/ jessie-staging/main ncbi-tools6 6.1.20120620-5 (diff) [139 kB]
Fetched 68.6 MB in 1min 19s (859 kB/s)
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-6sfEDK/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
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Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
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Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), csh | c-shell, debhelper (>= 9), libglu1-mesa-dev | libglu-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), csh, debhelper (>= 9), libglu1-mesa-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
dpkg-deb: building package `sbuild-build-depends-ncbi-tools6-dummy' in `/«BUILDDIR»/resolver-TwfDpH/apt_archive/sbuild-build-depends-ncbi-tools6-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install ncbi-tools6 build dependencies (apt-based resolver)                  │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils csh debhelper file fontconfig-config fonts-dejavu-core gettext
  gettext-base groff-base intltool-debian libasprintf0c2 libbsd0 libcroco3
  libdrm2 libexpat1 libffi6 libfontconfig1 libfreetype6 libgl1-mesa-dev
  libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev
  libice-dev libice6 libjpeg8 libmagic1 libmotif-common libmotif-dev libmrm4
  libpcre3-dev libpcrecpp0 libpipeline1 libpng12-0 libpng12-dev
  libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libuil4
  libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6
  libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6
  libxext-dev libxext6 libxfixes3 libxft2 libxm4 libxml2 libxmu-dev
  libxmu-headers libxmu6 libxrender1 libxt-dev libxt6 libxxf86vm1 man-db
  mesa-common-dev po-debconf ttf-dejavu-core ucf uil x11-common
  x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev
  xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation dh-make gettext-doc groff libice-doc
  libsm-doc libxcb-doc libxext-doc libxt-doc less www-browser libmail-box-perl
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libgl1-mesa-dri libglib2.0-data shared-mime-info libx11-doc xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils csh debhelper file fontconfig-config fonts-dejavu-core gettext
  gettext-base groff-base intltool-debian libasprintf0c2 libbsd0 libcroco3
  libdrm2 libexpat1 libffi6 libfontconfig1 libfreetype6 libgl1-mesa-dev
  libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev
  libice-dev libice6 libjpeg8 libmagic1 libmotif-common libmotif-dev libmrm4
  libpcre3-dev libpcrecpp0 libpipeline1 libpng12-0 libpng12-dev
  libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libuil4
  libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6
  libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6
  libxext-dev libxext6 libxfixes3 libxft2 libxm4 libxml2 libxmu-dev
  libxmu-headers libxmu6 libxrender1 libxt-dev libxt6 libxxf86vm1 man-db
  mesa-common-dev po-debconf sbuild-build-depends-ncbi-tools6-dummy
  ttf-dejavu-core ucf uil x11-common x11proto-core-dev x11proto-input-dev
  x11proto-kb-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 82 newly installed, 0 to remove and 1 not upgraded.
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Get:2 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-1 [29.4 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libbsd0 armhf 0.6.0-1 [66.6 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
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Get:13 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.10.2-2 [251 kB]
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Get:21 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
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Get:28 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-1 [21.0 kB]
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Get:30 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
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Get:32 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 8.0.5-6+rpi1 [122 kB]
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Get:34 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+3 [284 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-1 [132 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libmotif-common all 2.3.4-4 [29.2 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-4 [179 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.1-1 [55.4 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libxmu6 armhf 2:1.1.1-1 [59.1 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libxm4 armhf 2.3.4-4 [1060 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libmrm4 armhf 2.3.4-4 [83.0 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libuil4 armhf 2.3.4-4 [169 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-1 [136 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main csh armhf 20110502-2 [236 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-1 [1837 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130720 [671 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main xorg-sgml-doctools all 1:1.10-1 [24.1 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main x11proto-core-dev all 7.0.24-1 [779 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libxau-dev armhf 1:1.0.8-1 [23.0 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libxdmcp-dev armhf 1:1.1.1-1 [40.8 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main x11proto-input-dev all 2.3-1 [177 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main x11proto-kb-dev all 1.0.6-2 [269 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main xtrans-dev all 1.2.7-1 [112 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libpthread-stubs0 armhf 0.3-3 [3230 B]
Get:64 http://172.17.0.1/private/ jessie-staging/main libpthread-stubs0-dev armhf 0.3-3 [3996 B]
Get:65 http://172.17.0.1/private/ jessie-staging/main libxcb1-dev armhf 1.9.1-3 [98.5 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libx11-dev armhf 2:1.6.1-1 [982 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main mesa-common-dev armhf 8.0.5-6+rpi1 [278 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main x11proto-xext-dev all 7.2.1-1 [273 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libxext-dev armhf 2:1.3.2-1 [110 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-dev armhf 8.0.5-6+rpi1 [32.9 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libglu1-mesa-dev armhf 9.0.0-1 [276 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libice-dev armhf 2:1.0.8-2 [65.9 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main uil armhf 2.3.4-4 [26.7 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main libmotif-dev armhf 2.3.4-4 [2766 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-2 [350 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.49-4 [260 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main libsm-dev armhf 2:1.2.1-2 [35.6 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libxt-dev armhf 1:1.1.4-1 [447 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main libxmu-headers all 2:1.1.1-1 [77.8 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main libxmu-dev armhf 2:1.1.1-1 [64.7 kB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.23.52.20130612-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-2+rpi1 gcc-4.6_4.6.4-2+rpi1 libc6-dev_2.17-7+rpi1+b1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 linux-libc-dev_3.10.1-1+rpi1+b1
Package versions: apt_0.9.7.8+rpi1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.23.52.20130612-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.6.3-8 cpp-4.6_4.6.4-2+rpi1 csh_20110502-2 dash_0.5.7-3 debconf_1.5.51 debfoster_2.7-1.2 debhelper_9.20130720 debianutils_4.4 diffutils_1:3.2-8 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-6 fontconfig-config_2.10.2-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.4-2+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-2+rpi1 gcc-4.6-base_4.6.4-2+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8-base_4.8.1-6+rpi1 gettext_0.18.3.1-1 gettext-base_0.18.3.1-1 gnupg_1.4.14-1 gpgv_1.4.14-1 grep_2.14-3 groff-base_1.22.2-3 gzip_1.6-2 hostname_3.13 initramfs-tools_0.113 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.7.8+rpi1 libarchive-extract-perl_0.68-1 libasprintf0c2_0.18.3.1-1 libattr1_1:2.4.47-1 libblkid1_2.20.1-5.5 libbsd0_0.6.0-1 libbz2-1.0_1.0.6-5 libc-bin_2.17-7+rpi1+b1 libc-dev-bin_2.17-7+rpi1+b1 libc6_2.17-7+rpi1+b1 libc6-dev_2.17-7+rpi1+b1 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.12-1 libdpkg-perl_1.16.10 libdrm2_2.4.46-2 libexpat1_2.1.0-4 libffi6_3.0.13-4 libfontconfig1_2.10.2-2 libfreetype6_2.4.9-1.1 libgc1c2_1:7.2d-5 libgcc1_1:4.8.1-6+rpi1 libgdbm3_1.8.3-12 libgl1-mesa-dev_8.0.5-6+rpi1 libgl1-mesa-glx_8.0.5-6+rpi1 libglapi-mesa_8.0.5-6+rpi1 libglib2.0-0_2.36.4-1 libglu1-mesa_9.0.0-1 libglu1-mesa-dev_9.0.0-1 libgmp10_2:5.1.2+dfsg-2 libgomp1_4.8.1-6+rpi1 libice-dev_2:1.0.8-2 libice6_2:1.0.8-2 libjpeg8_8d-1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_4.7-1 libmotif-common_2.3.4-4 libmotif-dev_2.3.4-4 libmount1_2.20.1-5.5 libmpc3_1.0.1-1 libmpfr4_3.1.1-1 libmrm4_2.3.4-4 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnih-dbus1_1.0.3-4.1+b1 libnih1_1.0.3-4.1+b1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.4-1 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsm-dev_2:1.2.1-2 libsm6_2:1.2.1-2 libss2_1.42.8-1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-2+rpi1 libswitch-perl_2.16-2 libterm-ui-perl_0.36-1 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libuil4_2.3.4-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libx11-6_2:1.6.1-1 libx11-data_2:1.6.1-1 libx11-dev_2:1.6.1-1 libx11-xcb1_2:1.6.1-1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-glx0_1.9.1-3 libxcb1_1.9.1-3 libxcb1-dev_1.9.1-3 libxdamage1_1:1.1.4-1 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.2-1 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-1 libxft2_2.3.1-1 libxm4_2.3.4-4 libxml2_2.9.1+dfsg1-3 libxmu-dev_2:1.1.1-1 libxmu-headers_2:1.1.1-1 libxmu6_2:1.1.1-1 libxrender1_1:0.9.8-1 libxt-dev_1:1.1.4-1 libxt6_1:1.1.4-1 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.10.1-1+rpi1+b1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mesa-common-dev_8.0.5-6+rpi1 mount_2.20.1-5.5 mountall_2.49 multiarch-support_2.17-7+rpi1+b1 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.18.1-3 perl-base_5.18.1-3 perl-modules_5.18.1-3 plymouth_0.8.8-6+deb8u1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-tools6-dummy_0.invalid.0 sed_4.2.2-2 sensible-utils_0.0.9 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-8 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013d-1 ucf_3.0027+nmu1 udev_175-7.2 uil_2.3.4-4 util-linux_2.20.1-5.5 x11-common_1:7.7+3 x11proto-core-dev_7.0.24-1 x11proto-input-dev_2.3-1 x11proto-kb-dev_1.0.6-2 x11proto-xext-dev_7.2.1-1 xorg-sgml-doctools_1:1.10-1 xtrans-dev_1.2.7-1 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Jun 28 02:40:53 2013 UTC using RSA key ID F14A64A2
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20120620-5.dsc
dpkg-source: info: extracting ncbi-tools6 in ncbi-tools6-6.1.20120620
dpkg-source: info: unpacking ncbi-tools6_6.1.20120620.orig.tar.gz
dpkg-source: info: applying ncbi-tools6_6.1.20120620-5.diff.gz
dpkg-source: info: upstream files that have been modified: 
 ncbi-tools6-6.1.20120620/api/alignmgr2.c
 ncbi-tools6-6.1.20120620/api/aliread.c
 ncbi-tools6-6.1.20120620/api/pgppop.c
 ncbi-tools6-6.1.20120620/api/txalign.c
 ncbi-tools6-6.1.20120620/corelib/ncbienv.c
 ncbi-tools6-6.1.20120620/corelib/ncbimain.c
 ncbi-tools6-6.1.20120620/demo/makeset.c
 ncbi-tools6-6.1.20120620/desktop/bspview.c
 ncbi-tools6-6.1.20120620/desktop/ingenwin.c
 ncbi-tools6-6.1.20120620/desktop/seqpanel.c
 ncbi-tools6-6.1.20120620/doc/firewall.html
 ncbi-tools6-6.1.20120620/doc/fwd_check.sh
 ncbi-tools6-6.1.20120620/doc/man/Psequin.1
 ncbi-tools6-6.1.20120620/doc/man/asn2all.1
 ncbi-tools6-6.1.20120620/doc/man/asn2fsa.1
 ncbi-tools6-6.1.20120620/doc/man/asn2gb.1
 ncbi-tools6-6.1.20120620/doc/man/asndisc.1
 ncbi-tools6-6.1.20120620/doc/man/asnmacro.1
 ncbi-tools6-6.1.20120620/doc/man/asntool.1
 ncbi-tools6-6.1.20120620/doc/man/asnval.1
 ncbi-tools6-6.1.20120620/doc/man/blast.1
 ncbi-tools6-6.1.20120620/doc/man/blast2.1
 ncbi-tools6-6.1.20120620/doc/man/cleanasn.1
 ncbi-tools6-6.1.20120620/doc/man/idfetch.1
 ncbi-tools6-6.1.20120620/doc/man/nps2gps.1
 ncbi-tools6-6.1.20120620/doc/man/tbl2asn.1
 ncbi-tools6-6.1.20120620/make/makeall.unx
 ncbi-tools6-6.1.20120620/make/makedemo.unx
 ncbi-tools6-6.1.20120620/make/makenet.unx
 ncbi-tools6-6.1.20120620/make/makeshlb.unx
 ncbi-tools6-6.1.20120620/tools/readdb.c
 ncbi-tools6-6.1.20120620/tools/spidey.c
 ncbi-tools6-6.1.20120620/vibrant/netscape.c
 ncbi-tools6-6.1.20120620/vibrant/shim3d.c
 ncbi-tools6-6.1.20120620/vibrant/vibmain.c
 ncbi-tools6-6.1.20120620/vibrant/vibwndws.c

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-59e90c92-ee11-4d9b-b688-b6d5018a4d38
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 41459 22
SSH_CONNECTION=192.168.1.2 41459 192.168.1.46 22
SSH_TTY=/dev/pts/2
TERM=xterm
USER=root
_=/etc/init.d/buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package ncbi-tools6
dpkg-buildpackage: source version 6.1.20120620-5
 dpkg-source --before-build ncbi-tools6-6.1.20120620
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
rm -rf build/* bin/* include/* lib/* shlib
mkdir -p build bin include lib
rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory `/«PKGBUILDDIR»'
cd build && ln -s ../make/*.unx .
ln -s ../make/ln-if-absent build
mv build/makeall.unx build/makefile
chmod +x debian/makemenu debian/installman
/usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall  " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
	    CFLAGS1="-c -g -O2 -Wall -fPIC -D_PNG" \
	    LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
	    LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory `/«PKGBUILDDIR»/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
		../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithr.c
ncbithr.c: In function 's_TlsDestroyAll':
ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable]
cp -p ncbithr.o ../lib
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimain.c
ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbibs.c
ncbibs.c: In function 'Nlm_BSMerge':
ncbibs.c:106:3: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSAdd':
ncbibs.c:210:4: warning: statement with no effect [-Wunused-value]
ncbibs.c:222:4: warning: statement with no effect [-Wunused-value]
ncbibs.c:223:4: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSDelete':
ncbibs.c:336:4: warning: statement with no effect [-Wunused-value]
ncbibs.c:341:4: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSWrite':
ncbibs.c:594:3: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSRead':
ncbibs.c:658:3: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSGetByte':
ncbibs.c:702:2: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF wwwutils.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbierr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbienv.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbifile.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimath.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimem.c
ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default]
/usr/include/features.h:309:0: note: this is the location of the previous definition
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
ncbimisc.c: In function 'MergeStringArray':
ncbimisc.c:1269:22: warning: 'return' with no value, in function returning non-void [-Wreturn-type]
ncbimisc.c: In function 'XmlPathSuffixIs':
ncbimisc.c:2947:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbistr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbitime.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbilang.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnbufo.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asndebin.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnenbin.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asngen.c
asngen.c: In function 'AsnFindNthPieceOfObject':
asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnio.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnlex.c
asnlex.c:1322:13: warning: 'AsnLexWordUTF8' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnlext.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnout.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnprint.c
asnprint.c: In function 'GetXMLModuleName':
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
asnprint.c: In function 'AsnPrintCloseStruct':
asnprint.c:1771:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable]
asnprint.c: In function 'AsnPrintModuleXMLInc':
asnprint.c:2092:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asntypes.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asngenob.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gifgen.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF togif.c
togif.c: In function 'gdImageCreateFromGif':
togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable]
togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable]
togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable]
gcc  -DNCBI_NOTHREADS_AVAIL -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
ncbithrs.c: In function 's_TlsDestroyAll':
ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function 're_match_2':
regex.c:3768:19: warning: unused variable 'destination' [-Wunused-variable]
regex.c:3915:11: warning: unused variable 'destination' [-Wunused-variable]
regex.c:3968:11: warning: unused variable 'destination' [-Wunused-variable]
regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable]
regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable]
regex.c:4107:11: warning: unused variable 'destination' [-Wunused-variable]
regex.c:4120:11: warning: unused variable 'destination' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tsprintf.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tree.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF matrix.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
ncbi_socket.c: In function 's_GetLocalPort':
ncbi_socket.c:386:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 's_IsConnected':
ncbi_socket.c:2435:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:220:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 'TRIGGER_Create':
ncbi_socket.c:4002:18: warning: unused variable 'x_id' [-Wunused-variable]
ncbi_socket.c: In function 's_CreateListening':
ncbi_socket.c:4454:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 's_Accept':
ncbi_socket.c:4722:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:244:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 's_CreateOnTop':
ncbi_socket.c:5174:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:142:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c:5210:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 'DSOCK_Bind':
ncbi_socket.c:6609:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 'DSOCK_RecvMsg':
ncbi_socket.c:7002:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:175:16: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urlquery.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF binary.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn_connection.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objacces.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objalign.c
objalign.c: In function 'CommonSeqAlignLabelFunc':
objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedSegAsnRead':
objalign.c:2169:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SparseSegAsnRead':
objalign.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedExonAsnRead':
objalign.c:2600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedSegModifierFree':
objalign.c:2858:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'ProductPosFree':
objalign.c:3031:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedExonChunkFree':
objalign.c:3204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SpliceSiteAsnRead':
objalign.c:3446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'ProtPosAsnRead':
objalign.c:3600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SparseAlignAsnRead':
objalign.c:3769:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SparseSegExtAsnRead':
objalign.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedExonChunkAsnRead':
objalign.c:3305:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objalign.c: In function 'SplicedSegModifierAsnRead':
objalign.c:2938:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objall.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objbibli.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objfeat.c
objfeat.c: In function 'ModelEvidenceSupportAsnRead':
objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ExperimentSupportAsnRead':
objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ProgramIdAsnRead':
objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'EvidenceBasisAsnRead':
objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'InferenceSupportAsnRead':
objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ModelEvidenceItemAsnRead':
objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'SeqFeatSupportAsnRead':
objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'RNAQualAsnRead':
objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'RNAQualSetAsnRead':
objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'RNAGenAsnRead':
objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'GeneNomenclatureAsnRead':
objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRPrimerAsnRead':
objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRPrimerSetAsnRead':
objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRReactionAsnRead':
objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRReactionSetAsnRead':
objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'CloneRefAsnRead':
objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'CloneSeqSetAsnRead':
objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'CloneSeqAsnRead':
objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'SomaticOriginAsnRead':
objfeat.c:9393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'SomaticOriginConditionAsnRead':
objfeat.c:9472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VariationRefAsnRead':
objfeat.c:9551:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ConsequenceAsnWrite':
objfeat.c:10112:12: warning: variable 'av' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead':
objfeat.c:10572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_frameshiftAsnRead':
objfeat.c:10650:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VarRefDataFree':
objfeat.c:10750:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VarRefDataSetAsnRead':
objfeat.c:10803:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_elementFree':
objfeat.c:10997:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VariationInstAsnRead':
objfeat.c:11126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: At top level:
objfeat.c:11275:1: warning: "/*" within comment [-Wcomment]
objfeat.c: In function 'VariantPropertiesAsnRead':
objfeat.c:11304:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PhenotypeAsnRead':
objfeat.c:11625:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PopulationDataAsnRead':
objfeat.c:11821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ExtLocAsnRead':
objfeat.c:12034:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Seq_seqFree':
objfeat.c:12199:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'DeltaItemAsnRead':
objfeat.c:12232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_elementAsnRead':
objfeat.c:10539:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objfeat.c: In function 'CodeBreakAsnWrite':
objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
objfeat.c: In function 'VarRefDataAsnRead':
objfeat.c:10965:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objgen.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objloc.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmedli.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objpub.c
objpub.c: In function 'PubLabelUnique':
objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable]
objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable]
objpub.c: In function 'PubSetAsnRead':
objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wuninitialized]
objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objres.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objscoremat.c
objscoremat.c: In function 'PssmAsnRead':
objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmIntermediateDataAsnRead':
objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmFinalDataAsnRead':
objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmParametersAsnRead':
objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmWithParametersAsnRead':
objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'BlockPropertyAsnRead':
objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'CoreBlockAsnRead':
objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'LoopConstraintAsnRead':
objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'CoreDefAsnRead':
objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'FormatRpsDbParametersAsnRead':
objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objseq.c
objseq.c: In function 'LinkageEvidenceAsnRead':
objseq.c:1603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objseq.c: In function 'SeqGapAsnRead':
objseq.c:1755:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objseq.c: In function 'SeqDescrAsnWriteExtra':
objseq.c:2023:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable]
objseq.c: In function 'SeqDescAsnRead':
objseq.c:2446:28: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
objseq.c: In function 'BioseqAsnRead':
objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objblock.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:45:51: warning: "/*" within comment [-Wcomment]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objsset.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objsub.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objprt.c
objprt.c: In function 'PrintFormBooleanAsnRead':
objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormEnumAsnRead':
objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormTextAsnRead':
objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'UserFormatAsnRead':
objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormAsnRead':
objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormatAsnRead':
objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormBlockAsnRead':
objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintTemplateAsnRead':
objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objfdef.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objalignloc.c
objalignloc.c: In function 'AlignLocSetAsnRead':
objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c: In function 'Loc_locFree':
objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalignloc.c: In function 'AlignLocAsnRead':
objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'Loc_locAsnRead':
objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignIdFree':
objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignBoxAsnRead':
objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignRowsAsnRead':
objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignColumnsAsnRead':
objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objtable.c
objtable.c: In function 'SeqTableColumnInfoAsnRead':
objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
objtable.c: In function 'SeqTableColumnAsnRead':
objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable]
objtable.c: In function 'SeqTableColumnAsnWrite':
objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable]
objtable.c: In function 'SeqTableAsnRead':
objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'CommonStringTableAsnRead':
objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'CommonStringTableAsnWrite':
objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable]
objtable.c: In function 'CommonBytesTableAsnRead':
objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'CommonBytesTableAsnWrite':
objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable]
objtable.c: In function 'SeqTableSingleDataFree':
objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable]
objtable.c: In function 'SeqTableMultiDataAsnRead':
objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtable.c: In function 'SeqTableSparseIndexAsnRead':
objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objpubme.c
objpubme.c: In function 'PubmedEntryAsnRead':
objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objpubme.c: In function 'PubmedUrlAsnRead':
objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmdrs.c
objmdrs.c: In function 'MedlarsEntryAsnRead':
objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmdrs.c: In function 'MedlarsRecordAsnRead':
objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objproj.c
objproj.c: In function 'ProjectAsnRead':
objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable]
objproj.c: In function 'ProjectDescrAsnRead':
objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objproj.c: In function 'ProjdescFree':
objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objproj.c: In function 'ProjdescAsnRead':
objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable]
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objproj.c: In function 'ProjdescAsnRead':
objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objgbseq.c
objgbseq.c: In function 'GBSetAsnRead':
objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBSeqAsnRead':
objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBReferenceAsnRead':
objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBCommentAsnRead':
objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBStrucCommentAsnRead':
objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBFeatureAsnRead':
objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBFeatureSetAsnRead':
objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBAltSeqDataAsnRead':
objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBXrefAsnRead':
objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBCommentParagraphAsnRead':
objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBCommentItemAsnRead':
objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBStrucCommentItemAsnRead':
objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBIntervalAsnRead':
objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBQualifierAsnRead':
objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBAltSeqItemAsnRead':
objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objtseq.c
objtseq.c: In function 'TSeqAsnRead':
objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtseq.c: In function 'TSeqSetAsnRead':
objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtseq.c: In function 'BioseqToTSeq':
objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
objtseq.c: In function 'BioseqToMiniTSeq':
objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
objinsdseq.c: In function 'INSDSetAsnRead':
objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDSeqAsnRead':
objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDReferenceAsnRead':
objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDCommentAsnRead':
objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDStrucCommentAsnRead':
objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDFeatureAsnRead':
objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDFeatureSetAsnRead':
objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDAltSeqDataAsnRead':
objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDXrefAsnRead':
objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDCommentParagraphAsnRead':
objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDCommentItemAsnRead':
objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDStrucCommentItemAsnRead':
objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDIntervalAsnRead':
objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDQualifierAsnRead':
objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDAltSeqItemAsnRead':
objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmacro.c
objmacro.c: In function 'AECRActionAsnRead':
objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseActionAsnRead':
objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MacroActionListAsnRead':
objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MacroActionListAsnWrite':
objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SuspectRuleSetAsnRead':
objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SuspectRuleSetAsnWrite':
objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'WordSubstitutionAsnRead':
objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'WordSubstitutionSetAsnRead':
objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'WordSubstitutionSetAsnWrite':
objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'StringConstraintAsnRead':
objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StringConstraintSetAsnRead':
objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'StringConstraintSetAsnWrite':
objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'LocationPosConstraintFree':
objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationConstraintAsnRead':
objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalValAsnRead':
objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalValChoiceFree':
objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FeatQualLegalValChoiceAsnRead':
objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalSetAsnRead':
objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalSetAsnWrite':
objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FeatQualChoiceFree':
objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FeatQualChoiceAsnRead':
objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatureFieldAsnRead':
objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatureFieldLegalAsnRead':
objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatureFieldPairAsnRead':
objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RnaFeatTypeFree':
objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RnaQualAsnRead':
objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RnaQualPairAsnRead':
objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualPairAsnRead':
objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualChoiceFree':
objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualTextValAsnRead':
objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualValChoiceFree':
objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualValSetAsnRead':
objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SourceQualValSetAsnWrite':
objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtFieldPairAsnRead':
objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldFree':
objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoMoleculePairAsnRead':
objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoTechniquePairAsnRead':
objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoCompletednessPairAsnRead':
objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoMolClassPairAsnRead':
objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoTopologyPairAsnRead':
objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoStrandPairAsnRead':
objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldPairFree':
objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldListAsnRead':
objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldListAsnWrite':
objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldConstraintAsnRead':
objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StructuredCommentFieldFree':
objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StructuredCommentFieldPairAsnRead':
objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StructuredCommentFieldPairAsnWrite':
objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'DBLinkFieldPairAsnRead':
objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PubFieldConstraintAsnRead':
objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PubFieldSpecialConstraintTypeFree':
objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PubFieldSpecialConstraintAsnRead':
objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PublicationConstraintAsnRead':
objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceConstraintAsnRead':
objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead':
objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtConstraintFieldFree':
objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead':
objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead':
objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite':
objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FieldConstraintAsnRead':
objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FieldConstraintAsnWrite':
objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FieldTypeFree':
objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree':
objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'QuantityConstraintFree':
objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SequenceConstraintAsnRead':
objmacro.c:8945:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:8944:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TranslationConstraintAsnRead':
objmacro.c:9170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:9169:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConstraintChoiceFree':
objmacro.c:9322:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9384:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConstraintChoiceSetAsnRead':
objmacro.c:9616:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:9613:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'ConstraintChoiceSetAsnWrite':
objmacro.c:9669:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'TextMarkerFree':
objmacro.c:9709:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9741:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TextPortionAsnRead':
objmacro.c:9937:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:9936:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FieldEditAsnRead':
objmacro.c:10153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:10152:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FieldPairTypeFree':
objmacro.c:10300:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10350:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyActionAsnRead':
objmacro.c:10567:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:10566:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditActionAsnRead':
objmacro.c:10744:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:10743:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditActionAsnWrite':
objmacro.c:10819:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'TextTransformFree':
objmacro.c:10875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'TextTransformAsnRead':
objmacro.c:10910:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TextTransformSetAsnRead':
objmacro.c:11081:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11078:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'TextTransformSetAsnWrite':
objmacro.c:11134:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'ConvertActionAsnRead':
objmacro.c:11214:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11213:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CopyActionAsnRead':
objmacro.c:11406:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11405:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SwapActionAsnRead':
objmacro.c:11572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11571:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SwapActionAsnWrite':
objmacro.c:11647:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'AECRParseActionAsnRead':
objmacro.c:11745:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11744:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveActionAsnRead':
objmacro.c:11961:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11960:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveActionAsnWrite':
objmacro.c:12029:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'RemoveOutsideActionAsnRead':
objmacro.c:12119:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:12118:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ActionChoiceFree':
objmacro.c:12259:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12312:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcOrgChoiceFree':
objmacro.c:12499:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12528:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcOrgAsnRead':
objmacro.c:12711:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:12710:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcGeneralIdFree':
objmacro.c:12839:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12871:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcFree':
objmacro.c:13027:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13065:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseDstOrgAsnRead':
objmacro.c:13319:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:13318:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseDestFree':
objmacro.c:13447:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13485:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationIntervalAsnRead':
objmacro.c:13693:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:13692:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationChoiceFree':
objmacro.c:13818:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13850:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SequenceListAsnRead':
objmacro.c:14024:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14021:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SequenceListAsnWrite':
objmacro.c:14077:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SequenceListChoiceFree':
objmacro.c:14117:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SequenceListChoiceAsnRead':
objmacro.c:14149:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyFeatureActionAsnRead':
objmacro.c:14338:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14337:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveFeatureActionAsnRead':
objmacro.c:14602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14601:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFromCDSOptionsAsnRead':
objmacro.c:14766:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14765:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFeatureSrcOptionsFree':
objmacro.c:14900:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead':
objmacro.c:14932:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RegionTypeAsnRead':
objmacro.c:15099:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15098:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFeatureDstOptionsFree':
objmacro.c:15215:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15250:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFeatureActionAsnRead':
objmacro.c:15464:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15463:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditLocationStrandAsnRead':
objmacro.c:15670:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15669:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'Partial5SetActionAsnRead':
objmacro.c:15831:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15830:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'Partial3SetActionAsnRead':
objmacro.c:15992:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15991:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PartialBothSetActionAsnRead':
objmacro.c:16153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16152:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ExtendToFeatureAsnRead':
objmacro.c:16315:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16314:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationEditTypeFree':
objmacro.c:16452:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16499:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditFeatureLocationActionAsnRead':
objmacro.c:16774:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16773:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoBlockAsnRead':
objmacro.c:16971:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16970:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoBlockAsnWrite':
objmacro.c:17053:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'RemoveDescriptorActionAsnRead':
objmacro.c:17151:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17150:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AutodefActionAsnRead':
objmacro.c:17317:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixPubCapsActionAsnRead':
objmacro.c:17488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17487:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SortFieldsActionAsnRead':
objmacro.c:17690:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17689:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixAuthorCapsAsnRead':
objmacro.c:17866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17865:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixCapsActionFree':
objmacro.c:17982:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18017:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixFormatActionFree':
objmacro.c:18189:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18218:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead':
objmacro.c:18422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:18421:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'GeneXrefTypeAsnRead':
objmacro.c:18613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:18612:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'XrefTypeFree':
objmacro.c:18747:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'XrefTypeAsnRead':
objmacro.c:18779:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveXrefsActionAsnRead':
objmacro.c:18948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:18947:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveXrefsActionAsnWrite':
objmacro.c:19023:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MakeGeneXrefActionAsnRead':
objmacro.c:19116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19115:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AuthorFixActionAsnRead':
objmacro.c:19281:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19280:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'UpdateSequencesActionAsnRead':
objmacro.c:19447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19446:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CreateTSAIdsSrcFree':
objmacro.c:19574:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'CreateTSAIdsSrcAsnRead':
objmacro.c:19606:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CreateTSAIdsActionAsnRead':
objmacro.c:19787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19786:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AutofixActionAsnRead':
objmacro.c:19966:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19965:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixSetsActionFree':
objmacro.c:20084:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20113:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TableMatchTypeFree':
objmacro.c:20269:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20301:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TableMatchAsnRead':
objmacro.c:20547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:20546:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyTableExtraDataFree':
objmacro.c:20675:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ApplyTableExtraDataAsnRead':
objmacro.c:20704:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyTableActionAsnRead':
objmacro.c:20877:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:20876:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AddFileActionAsnRead':
objmacro.c:21057:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:21056:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AddDescriptorListActionAsnRead':
objmacro.c:21225:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:21224:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AddDescriptorListActionAsnWrite':
objmacro.c:21300:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'RemoveSequencesActionAsnRead':
objmacro.c:21393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:21392:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveSequencesActionAsnWrite':
objmacro.c:21461:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MacroActionChoiceFree':
objmacro.c:21512:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21613:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SearchFuncFree':
objmacro.c:22093:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22131:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SimpleReplaceAsnRead':
objmacro.c:22400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:22399:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ReplaceFuncFree':
objmacro.c:22536:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ReplaceFuncAsnRead':
objmacro.c:22571:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ReplaceRuleAsnRead':
objmacro.c:22751:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:22750:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SuspectRuleAsnRead':
objmacro.c:22921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:22920:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21852:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20172:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18284:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18084:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12930:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9466:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9800:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10416:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12382:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12580:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13160:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13552:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13906:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15320:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16603:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20392:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22236:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objent2.c
objent2.c: In function 'Entrez2IdListAsnRead':
objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2BooleanExpAsnRead':
objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2BooleanElementFree':
objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LimitsAsnRead':
objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2BooleanTermAsnRead':
objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2RequestAsnRead':
objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'E2RequestFree':
objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'E2RequestAsnRead':
objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2EvalBooleanAsnRead':
objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2TermQueryAsnRead':
objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2TermPosAsnRead':
objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2HierQueryAsnRead':
objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2GetLinksAsnRead':
objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2IdAsnRead':
objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DtFilterAsnRead':
objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2ReplyAsnRead':
objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'E2ReplyFree':
objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2InfoAsnRead':
objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2BooleanReplyAsnRead':
objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DocsumListAsnRead':
objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2TermListAsnRead':
objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2HierNodeAsnRead':
objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2LinkSetAsnRead':
objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LinkCountListAsnRead':
objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2DbInfoAsnRead':
objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2FieldInfoAsnRead':
objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LinkInfoAsnRead':
objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead':
objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DocsumAsnRead':
objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2DocsumDataAsnRead':
objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2TermAsnRead':
objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LinkCountAsnRead':
objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ent2api.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pmfapi.c
pmfapi.c: In function 'PubMedSynchronousQuery':
pmfapi.c:1224:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'PubSeqSynchronousQueryEx':
pmfapi.c:1458:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'PubSeqSynchronousQueryTI':
pmfapi.c:1636:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'PubSeqSynchronousQuerySRA':
pmfapi.c:1717:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'GiRevHistSynchronousQuery':
pmfapi.c:1790:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'GiAccVerSynchronousQuery':
pmfapi.c:1842:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'AccnRevHistSynchronousQuery':
pmfapi.c:1893:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'GiSeqIdSetSynchronousQuery':
pmfapi.c:1944:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'AccnListSynchronousQuery':
pmfapi.c:1994:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objtax3.c
objtax3.c: In function 'Taxon3RequestAsnRead':
objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3RequestFree':
objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'SequenceOfIntAsnRead':
objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'Taxon3ReplyAsnRead':
objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3ReplyFree':
objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3ErrorAsnRead':
objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3DataAsnRead':
objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'Value_valueFree':
objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3RefreshFlagsAsnRead':
objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objtax3.c: In function 'T3ReplyAsnRead':
objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax3.c: In function 'T3RequestAsnRead':
objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax3.c:1361:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tax3api.c
tax3api.c: In function 'Tax3SynchronousQuery':
tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'CheckSuggestedFixes':
tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'TryNewSuggestedFixes':
tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'GetSuggestedNamesFromRank':
tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'BioSourceFromBioSample':
tax3api.c:3220:16: warning: unused variable 'max' [-Wunused-variable]
tax3api.c: At top level:
tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function]
tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function]
tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function]
tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function]
tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function]
tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objegkludge.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objentgene.c
objentgene.c: In function 'EntrezgeneAsnRead':
objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'EntrezgeneSetAsnRead':
objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable]
objentgene.c: In function 'EntrezgeneSetAsnWrite':
objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable]
objentgene.c: In function 'GeneTrackAsnRead':
objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'GeneCommentaryAsnRead':
objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'Method_methodFree':
objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'Method_methodAsnRead':
objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'GeneSourceAsnRead':
objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'XtraTermsAsnRead':
objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'OtherSourceAsnRead':
objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objentgene.c:1166:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmla2.c
objmla2.c: In function 'Mla2RequestFree':
objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
objmla2.c: In function 'TitleMsg2AsnRead':
objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
objmla2.c: In function 'TitleMsgList2AsnRead':
objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmla2.c: In function 'Mla2BackAsnRead':
objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mla2api.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF qblastapi.c
qblastapi.c: In function 'SecondQBlastCallback':
qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable]
qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx':
qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx':
qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmim.c
objmim.c: In function 'MimSetAsnRead':
objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimDateAsnRead':
objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimEntryAsnRead':
objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimCitAsnRead':
objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimTextAsnRead':
objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimEditItemAsnRead':
objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimAllelicVariantAsnRead':
objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimIndexTermAsnRead':
objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimReferenceAsnRead':
objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimLinkAsnRead':
objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimAuthorAsnRead':
objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimPageAsnRead':
objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objvalid.c
objvalid.c: In function 'FieldRuleAsnRead':
objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable]
objvalid.c: In function 'FieldSetAsnRead':
objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'FieldSetAsnWrite':
objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'DependentFieldRuleAsnRead':
objvalid.c:390:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:389:12: warning: unused variable 'isError' [-Wunused-variable]
objvalid.c: In function 'DependentFieldSetAsnRead':
objvalid.c:573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:570:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'DependentFieldSetAsnWrite':
objvalid.c:626:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'CommentRuleAsnRead':
objvalid.c:708:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:707:12: warning: unused variable 'isError' [-Wunused-variable]
objvalid.c: In function 'CommentSetAsnRead':
objvalid.c:898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:895:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'CommentSetAsnWrite':
objvalid.c:951:12: warning: unused variable 'av' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mimapi.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cddapi.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqport.c
seqport.c: In function 'productLoc_to_locationLoc':
seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'NaLocFromNaInterval':
seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'dnaLoc_to_aaLoc':
seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable]
seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'DeltaRevComp':
seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'SeqSearchEnterNucWord':
seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'ProtSearchEnterProtWord':
seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sequtil.c
sequtil.c: In function 'GetPointsForLeftAndRightOffsets':
sequtil.c:7959:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'SeqPointWriteEx':
sequtil.c:8492:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'TaxNameFromCommon':
sequtil.c:8648:5: warning: missing braces around initializer [-Wmissing-braces]
sequtil.c:8648:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces]
sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr':
sequtil.c:9470:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'SeqIdFromAccessionEx':
sequtil.c:10070:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'BSCompressDNAOld':
sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'GenericCompressDNAEx':
sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'BSConvertSeq':
sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'SeqLocCoverage':
sequtil.c:6905:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'GetThePointForOffsetEx':
sequtil.c:7919:14: warning: 'last_strand' may be used uninitialized in this function [-Wuninitialized]
sequtil.c:7900:14: warning: 'first_strand' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prtutil.c
prtutil.c: In function 'StdFormatPrint':
prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from simple.c:69:0:
../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default]
../include/all.h:5745:0: note: this is the location of the previous definition
simple.c: In function 'SimpleSeqAsnRead':
simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wuninitialized]
simple.c:170:17: note: 'b' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tofasta.c
tofasta.c: In function 'DoSpecialDefline':
tofasta.c:1407:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
tofasta.c: At top level:
tofasta.c:3072:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function]
tofasta.c:3101:16: warning: 'get_descr' defined but not used [-Wunused-function]
tofasta.c:3196:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function]
tofasta.c:3359:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function]
tofasta.c:3445:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function]
tofasta.c:3479:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function]
tofasta.c: In function 'FastaReadSequenceInternalEx':
tofasta.c:2476:43: warning: 'mask_to' may be used uninitialized in this function [-Wuninitialized]
tofasta.c: In function 'FastaToSeqEntryInternalExEx':
tofasta.c:2852:19: warning: 'fd' may be used uninitialized in this function [-Wuninitialized]
tofasta.c:2672:25: warning: 'firstchar' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tofile.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tomedlin.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF valid.c
valid.c: In function 'Valid1GatherProc':
valid.c:2238:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqIdCase':
valid.c:3342:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateGenProdSet':
valid.c:5551:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CountAdjacentProc':
valid.c:6193:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioseqInst':
valid.c:6584:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
valid.c:6526:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioSource':
valid.c:13688:19: warning: variable 'id' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateDblink':
valid.c:14737:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqDescrCommon':
valid.c:14795:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioseqContextIndexed':
valid.c:17742:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
valid.c:17154:41: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBarcodeIndexNumber':
valid.c:18667:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioseqContext':
valid.c:18775:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateRptUnit':
valid.c:20323:32: warning: variable 'found' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CheckForCommonCDSProduct':
valid.c:22238:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable]
valid.c:22235:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CheckForIllegalDbxref':
valid.c:22617:16: warning: variable 'id' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateAnticodon':
valid.c:23348:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable]
valid.c:23347:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
valid.c: In function 'IsGeneXrefRedundant':
valid.c:24599:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqFeat':
valid.c:24763:19: warning: variable 'count' set but not used [-Wunused-but-set-variable]
valid.c:24741:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CdTransCheck':
valid.c:26675:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'SpliceCheckEx':
valid.c:27477:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CdsProductIdCheck':
valid.c:27823:15: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqLoc':
valid.c:27887:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
valid.c:27886:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
valid.c: At top level:
valid.c:1415:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function]
valid.c:4089:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function]
valid.c:5438:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function]
valid.c:6450:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function]
valid.c:9394:16: warning: 'ConsistentWithC' defined but not used [-Wunused-function]
valid.c:12157:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function]
valid.c:12959:16: warning: 'LatLonInRange' defined but not used [-Wunused-function]
valid.c:13056:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function]
valid.c:18292:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function]
valid.c:18342:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function]
valid.c:24281:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF valapi.c
valapi.c: In function 'DoesStringMatchExpression':
valapi.c:253:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable]
valapi.c: In function 'ReorderStructuredCommentFields':
valapi.c:777:82: warning: unused variable 'ufp_last' [-Wunused-variable]
valapi.c:777:72: warning: unused variable 'ufp_next' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr.c
alignmgr.c: In function 'AlnMgrIndexParentSA':
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
alignmgr.c: In function 'AlnMgrGetNthBlockRange':
alignmgr.c:4182:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx':
alignmgr.c:5157:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable]
alignmgr.c: In function 'AlnMgrMapBioseqToBioseq':
alignmgr.c:10840:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
alignmgr.c:5405:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function]
alignmgr.c:10572:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function]
alignmgr.c:6123:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function]
alignmgr.c:6650:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function]
alignmgr.c: In function 'AlnMgrUnpackSeqAlign':
alignmgr.c:1149:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList':
alignmgr.c:1755:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrDeleteNthRow':
alignmgr.c:9809:31: warning: 'abp_prev' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA':
alignmgr.c:4115:19: warning: 'tmp_end' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:4113:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'am_is_consistent':
alignmgr.c:10114:43: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrGetSubAlign':
alignmgr.c:9097:15: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster':
alignmgr.c:5829:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:5553:17: note: 'sip_tmp' was declared here
alignmgr.c:5881:25: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:5846:18: note: 'sip_tmp' was declared here
alignmgr.c:5865:11: warning: 'sip_head' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:5845:18: note: 'sip_head' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aliparse.c
aliparse.c: In function 's_IsInterleaved':
aliparse.c:930:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_ProcessInterId':
aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_ProcessInterSeq':
aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_AnalyzeInterleaved':
aliparse.c:1193:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c: In function 's_ProcessContigId':
aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_ProcessContigSeq':
aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_AnalyzeContiguous':
aliparse.c:1603:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c: In function 's_CheckContext':
aliparse.c:2151:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 'PrintOutMultAlign':
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable]
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function]
aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function]
aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function]
aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function]
aliparse.c: In function 's_GetRowIdString':
aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wuninitialized]
aliparse.c: In function 's_ProcessMaybes':
aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wuninitialized]
aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wuninitialized]
aliparse.c: In function 'Ali_Read':
aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wuninitialized]
aliparse.c:1154:20: note: 'previousLength' was declared here
aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wuninitialized]
aliparse.c:820:20: note: 'seqLinePtr' was declared here
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aliread.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alignval.c
alignval.c: In function 'ValidateSeqlengthInDenseSeg':
alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
alignval.c: In function 'PercentStringMatch':
alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'CheckAlnSeqLens':
alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'ValidateSeqAlign':
alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'GetAlignmentColumnPercentIdentities':
alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'WeightedAlignmentPercentIdentity':
alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function]
alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function]
alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
sqnutil1.c: In function 'GeneExtendFunc':
sqnutil1.c:2514:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'ParseAnticodon':
sqnutil1.c:3961:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'ParseCodeBreak':
sqnutil1.c:4081:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'CleanOrgModListEx':
sqnutil1.c:6280:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sqnutil1.c: In function 'CleanUpPubdescAuthors':
sqnutil1.c:9213:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs':
sqnutil1.c:14155:24: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'LinkTwoFeatures':
sqnutil1.c:18204:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback':
sqnutil1.c:18750:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable]
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil1.c:2509:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function]
sqnutil1.c:5290:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function]
sqnutil1.c:7645:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function]
sqnutil1.c:10250:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function]
sqnutil1.c:10364:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
sqnutil2.c: In function 'FindResidueByName':
sqnutil2.c:5197:11: warning: variable 'last' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'ReadFeatureTableEx':
sqnutil2.c:7202:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable]
sqnutil2.c:7194:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'SeqEntryCopyReplace':
sqnutil2.c:9199:8: warning: variable 'type' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'StreamingReadBioseq':
sqnutil2.c:10024:10: warning: variable 'level' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'StreamAsnForDescriptors':
sqnutil2.c:10257:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
sqnutil2.c: In function 'StreamingReadWriteSeqSubmit':
sqnutil2.c:10637:1: warning: label 'ret' defined but not used [-Wunused-label]
sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors':
sqnutil2.c:10676:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
sqnutil2.c: In function 'ReadFeatureTableFile':
sqnutil2.c:11627:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'ReadFastaOnly':
sqnutil2.c:11821:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline':
sqnutil2.c:12352:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'PrintQualityScoresToBuffer':
sqnutil2.c:12958:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'GetScoresbySeqId':
sqnutil2.c:13367:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'IsStringInSpanInList':
sqnutil2.c:17223:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable]
sqnutil2.c:17221:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'CreateStructuredCommentsFromFile':
sqnutil2.c:19251:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'AlignmentIntervalToString':
sqnutil2.c:19615:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable]
sqnutil2.c:19614:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'AdjustForConsensusSpliceCallback':
sqnutil2.c:20781:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'RemoveGIProc':
sqnutil2.c:21356:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil2.c:4661:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function]
sqnutil2.c:8266:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function]
sqnutil2.c:16055:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap':
sqnutil3.c:526:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'CautiousSeqEntryCleanup':
sqnutil3.c:2265:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences':
sqnutil3.c:3376:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
sqnutil3.c:3370:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx':
sqnutil3.c:5124:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable]
sqnutil3.c:5118:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable]
sqnutil3.c:5118:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'GetCDSformRNA':
sqnutil3.c:19157:8: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'FindTextInFlatfileEx':
sqnutil3.c:20891:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'CheckForTitleAuthorConflicts':
sqnutil3.c:21972:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'SortVnpByBspProjectId':
sqnutil3.c:25733:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress]
sqnutil3.c: In function 'GetDiscrepancyItemTextEx':
sqnutil3.c:28202:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable]
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil3.c:9621:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function]
sqnutil3.c:9672:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function]
sqnutil3.c:9755:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function]
sqnutil3.c:10252:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function]
sqnutil3.c:13399:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function]
sqnutil3.c:16581:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function]
sqnutil3.c:18676:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function]
sqnutil3.c:19971:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function]
sqnutil3.c:23725:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function]
sqnutil3.c:31396:13: warning: 'FindBadGPS' defined but not used [-Wunused-function]
sqnutil3.c:31404:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function]
sqnutil3.c:33544:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function]
sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback':
sqnutil3.c:889:23: warning: 'best_diff' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'ValidateInferenceQualifier':
sqnutil3.c:6033:6: warning: 'rest' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c:6087:13: warning: 'best' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'CheckForDivConflicts':
sqnutil3.c:7901:28: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'tRNASameStrandBioseqCallback':
sqnutil3.c:16126:8: warning: 'strand' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'FindMismatchedComments':
sqnutil3.c:25390:47: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'FixCountryColons':
sqnutil3.c:7523:14: warning: 'biop' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'AddmRNAForCDS':
sqnutil3.c:19565:3: warning: 'rna' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
sqnutil4.c: In function 'ListClauses':
sqnutil4.c:8272:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'SmashOneTallClause':
sqnutil4.c:9576:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'GetFeatureClauseForSeg':
sqnutil4.c:10448:21: warning: variable 'start' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'IsAmplifiedMiscFeat':
sqnutil4.c:10702:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:13849:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'ExtraCDSCreationActions':
sqnutil4.c:14728:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'TESTDisplayQualCombo':
sqnutil4.c:15752:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS':
sqnutil4.c:17198:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'AddNewUniqueAnnotations':
sqnutil4.c:17372:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'AssignBioseqToLineageGroup':
sqnutil4.c:18024:27: warning: variable 'vnp_last' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'ImportNucleotideFASTASequencesFromFile':
sqnutil4.c:26442:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil4.c:4945:13: warning: 'CountFeatures' defined but not used [-Wunused-function]
sqnutil4.c:9510:13: warning: 'RemoveFeats' defined but not used [-Wunused-function]
sqnutil4.c:9674:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function]
sqnutil4.c:9705:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function]
sqnutil4.c:15584:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function]
sqnutil4.c:15872:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function]
sqnutil4.c:15901:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function]
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:14023:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF subutil.c
subutil.c: In function 'AddSeqLitToBioseq':
subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
subutil.c: In function 'AddReferenceToSegmentedEntry':
subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
subutil.c: In function 'GetDNAConv':
subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'GetProteinConv':
subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'AddBasesToByteStore':
subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'AddAAsToByteStore':
subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'CitArtBuild':
subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
subutil.c: At top level:
subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function]
subutil.c: In function 'AddGapToSegmentedEntry':
subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF edutil.c
edutil.c: In function 'SeqLocsToDeltaSeqs':
edutil.c:795:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqLocCopyPart':
edutil.c:2243:13: warning: variable 'done' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'IndexedSeqFeatsCopy':
edutil.c:2400:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqFeatsCopy':
edutil.c:2504:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqLocInsert':
edutil.c:3686:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdRecreateDeletedFeats':
edutil.c:4212:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdSeqLocInsert':
edutil.c:4512:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdSeqLocDelete':
edutil.c:5069:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdInsertAdjustFeat':
edutil.c:5300:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
edutil.c: In function 'SeqEdDeleteFromBsp':
edutil.c:6485:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
edutil.c:6548:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
edutil.c:6437:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable]
edutil.c:6428:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'BioseqCopyEx':
edutil.c:2152:25: warning: 'head' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
asn2ff1.c: In function 'asn2ff_print':
asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable]
asn2ff1.c: In function 'Asn2ffJobCreate':
asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable]
asn2ff1.c: In function 'SeqEntryToEntrez':
asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable]
asn2ff1.c: In function 'SeqLocToFlat':
asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable]
asn2ff1.c: In function 'asn2ff_setup':
asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
asn2ff1.c: In function 'PrintStatusLine':
asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable]
asn2ff1.c: In function 'asn2gb_setup':
asn2ff1.c:2403:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2ff1.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function]
asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function]
asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function]
asn2ff1.c: In function 'asn2gp_setup':
asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wuninitialized]
asn2ff1.c: In function 'asn2embl_setup':
asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wuninitialized]
asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq':
asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
asn2ff2.c: In function 'GetStrForBankit':
asn2ff2.c:518:9: warning: unused variable 'i' [-Wunused-variable]
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:769:34: warning: unused variable 'string' [-Wunused-variable]
asn2ff2.c: In function 'GP_GetSeqDescrComms':
asn2ff2.c:1163:10: warning: unused variable 'got_comment' [-Wunused-variable]
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wreturn-type]
asn2ff2.c: In function 'GetGibbsqCommentLength':
asn2ff2.c:1600:7: warning: unused variable 'gibbsq' [-Wunused-variable]
asn2ff2.c: In function 'GatherDescrByChoice':
asn2ff2.c:1864:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable]
asn2ff2.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff2.c:232:16: warning: 'has_comment' defined but not used [-Wunused-variable]
asn2ff2.c:680:16: warning: 'GetEvidence' defined but not used [-Wunused-function]
asn2ff2.c:1190:16: warning: 'GetSPBlock' defined but not used [-Wunused-function]
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:829:8: warning: 'is_other' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
asn2ff3.c: In function 'PutGeneFirst':
asn2ff3.c:1662:26: warning: unused variable 'qual_temp' [-Wunused-variable]
asn2ff3.c:1661:10: warning: unused variable 'still_looking' [-Wunused-variable]
asn2ff3.c: In function 'mRNAEvidenceComment':
asn2ff3.c:1746:9: warning: unused variable 'Locus_id' [-Wunused-variable]
asn2ff3.c: In function 'Add_gene_id':
asn2ff3.c:3306:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat]
asn2ff3.c: In function 'Add_trid':
asn2ff3.c:3712:7: warning: unused variable 'gi' [-Wunused-variable]
asn2ff3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff3.c:3291:13: warning: 'Add_gene_id' defined but not used [-Wunused-function]
asn2ff3.c: In function 'GettRNAaa':
asn2ff3.c:2207:6: warning: 'seq_code' may be used uninitialized in this function [-Wuninitialized]
asn2ff3.c: In function 'Add_dbxref.isra.0':
asn2ff3.c:858:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
asn2ff4.c: In function 'FlatLocPoint':
asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable]
asn2ff4.c: In function 'do_FlatLoc':
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type]
asn2ff4.c: In function 'CreateImpFeatFromProt':
asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
asn2ff4.c: In function 'MatchNAGeneToFeat':
asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
asn2ff4.c: In function 'MatchAAGeneToFeat':
asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
asn2ff4.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff4.c: In function 'CheckNewSfpLoc':
asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
asn2ff5.c: In function 'format_cit_sub':
asn2ff5.c:1023:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable]
asn2ff5.c: In function 'format_thesis':
asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
asn2ff5.c: In function 'format_book':
asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
asn2ff5.c: In function 'format_jourarticle':
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asn2ff5.c: In function 'StripParanthesis':
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
asn2ff5.c: In function 'PostARefErrMessage':
asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable]
asn2ff5.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function]
asn2ff5.c: In function 'CheckPubs':
asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wuninitialized]
asn2ff5.c: In function 'FlatJournal':
asn2ff5.c:1946:23: warning: 'temp' may be used uninitialized in this function [-Wuninitialized]
asn2ff5.c:1151:10: warning: 'afp' may be used uninitialized in this function [-Wuninitialized]
asn2ff5.c:1051:11: note: 'afp' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
asn2ff6.c: In function 'AddGBQual':
asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable]
asn2ff6.c: In function 'BioseqGetGBDivCodeEx':
asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
asn2ff6.c: In function 'GR_PrintPubs':
asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable]
asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable]
asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable]
asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable]
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable]
asn2ff6.c: In function 'ValidateOtherAccession':
asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable]
asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable]
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable]
asn2ff6.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function]
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2866:33: warning: 'exp' may be used uninitialized in this function [-Wuninitialized]
asn2ff6.c: In function 'MakeBaseLocusAwp':
asn2ff6.c:3093:17: warning: 'num_of_digits' may be used uninitialized in this function [-Wuninitialized]
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
asn2gnb1.c: In function 'IsWholeWordSubstr':
asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'DoOneSection':
asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'Count2Seg':
asn2gnb1.c:3215:18: warning: variable 'to' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:3213:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: At top level:
asn2gnb1.c:3492:3: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3492:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces]
asn2gnb1.c: In function 'SeqIdWriteForTable':
asn2gnb1.c:5571:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:5570:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'DoImmediateFormat':
asn2gnb1.c:6704:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb1.c:6683:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'asn2gnbk_format':
asn2gnb1.c:6825:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb1.c: In function 'asn2gnbk_cleanup':
asn2gnb1.c:6871:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'SeqEntryToGnbk':
asn2gnb1.c:7057:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:7052:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
asn2gnb2.c: In function 's_LocusAddSuffix':
asn2gnb2.c:206:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable]
asn2gnb2.c: In function 'AddLocusBlock':
asn2gnb2.c:1323:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2gnb2.c: In function 'AddDblinkBlock':
asn2gnb2.c:2756:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable]
asn2gnb2.c: In function 'GetRefsOnBioseq':
asn2gnb2.c:5448:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
asn2gnb2.c:5445:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb2.c:5439:22: warning: variable 'right' set but not used [-Wunused-but-set-variable]
asn2gnb2.c:5433:22: warning: variable 'left' set but not used [-Wunused-but-set-variable]
asn2gnb2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
asn2gnb3.c: In function 'GetStatusForRefTrack':
asn2gnb3.c:601:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetSourcesOnBioseq':
asn2gnb3.c:4151:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:4149:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:4148:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetFeatsOnCdsProduct':
asn2gnb3.c:5007:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct':
asn2gnb3.c:5155:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5154:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5153:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5152:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5151:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetFeatsOnBioseq':
asn2gnb3.c:5376:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5349:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
asn2gnb4.c: In function 'FormatFeatureBlockQuals':
asn2gnb4.c:3591:50: warning: "/*" within comment [-Wcomment]
asn2gnb4.c:2969:24: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb4.c:2910:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable]
asn2gnb4.c: In function 'FF_asn2gb_www_featkey':
asn2gnb4.c:5180:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:6354:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat':
asn2gnb4.c:8448:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb4.c: In function 'FormatFeatureQuals':
asn2gnb4.c:8521:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:7398:24: warning: 'sep' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
asn2gnb5.c: In function 'FormatCitBookArt':
asn2gnb5.c:1874:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
asn2gnb6.c: In function 'FlatLocElement':
asn2gnb6.c:2390:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2gnb6.c: In function 'FormatContigBlock':
asn2gnb6.c:5401:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
asn2gnb6.c: In function 'FormatSequenceBlock':
asn2gnb6.c:5855:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function 'CkLabelType':
gbfeat.c:1530:4: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbftglob.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbparint.c
gbparint.c: In function 'Nlm_gbparselex':
gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gbparint.c: In function 'Nlm_gbparselex_ver':
gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces]
utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF utilpub.c
utilpub.c: In function 'FindCit':
utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
utilpub.c: In function 'ChangeCitQual':
utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable]
utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ffprint.c
ffprint.c: In function 'FFBSPrint':
ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable]
ffprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF wprint.c
wprint.c: In function 'LocPrintGenome':
wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable]
wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable]
wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable]
wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable]
wprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable]
wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable]
wprint.c: In function 'www_xref':
wprint.c:1376:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized]
wprint.c:1376:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized]
wprint.c: In function 'www_xref_button':
wprint.c:1419:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized]
wprint.c:1419:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized]
wprint.c: In function 'PrintSPBlock':
wprint.c:1612:13: warning: 's' may be used uninitialized in this function [-Wuninitialized]
wprint.c:1601:13: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF satutil.c
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
satutil.c: At top level:
satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function]
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqmgr.c
seqmgr.c: In function 'SeqEntrySetScope':
seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'ClearBioseqFindCache':
seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp':
seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'CheckForTransSplice':
seqmgr.c:5644:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'SeqEntryAsnOut':
seqmgr.c:11692:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable]
seqmgr.c:11692:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable]
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
seqmgr.c: In function 'SeqMgrGetNextDescriptor':
seqmgr.c:9580:56: warning: 'bssp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmgr.c
objmgr.c: In function 'ObjMgrSelectFunc2':
objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
objmgr.c: In function 'ObjMgrAlsoSelect':
objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized]
objmgr.c:4030:22: note: 'ssp' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gather.c
gather.c: In function 'AttachDataProc':
gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable]
gather.c: In function 'GatherSeqFeat':
gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wuninitialized]
gather.c:1530:56: warning: 'max_interval' may be used uninitialized in this function [-Wuninitialized]
gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wuninitialized]
gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wuninitialized]
gather.c: In function 'gather_align_data':
gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wuninitialized]
gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wuninitialized]
gather.c: In function 'GatherBioseqFunc':
gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wuninitialized]
gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wuninitialized]
gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF findrepl.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF codon.c
codon.c: In function 'make_cds_paragraph':
codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF jzcoll.c
jzcoll.c: In function 'load_default_matrix':
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c: In function 'GetUseThisGi':
jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable]
jzcoll.c: In function 'buffer_for_feature':
jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable]
jzcoll.c: In function 'ProcessTextInsertion':
jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable]
jzcoll.c: In function 'satcollfunc':
jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable]
jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable]
jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable]
jzcoll.c: In function 'collect_anpnode_with_option':
jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable]
jzcoll.c: In function 'ck_seqfeat_extra':
jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable]
jzcoll.c: In function 'load_open_close_sts_mark':
jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable]
jzcoll.c: In function 'FeatNodeCompProc':
jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable]
jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable]
jzcoll.c: At top level:
jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function]
jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function]
jzcoll.c: In function 'load_text':
jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF jzmisc.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF maputil.c
maputil.c: In function 'load_gene_list':
maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable]
maputil.c: In function 'gmarkfunc':
maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mconsist.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF macroapi.c
macroapi.c: In function 'AdvancedStringCompare':
macroapi.c:4416:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'RemoveGBQualMatch':
macroapi.c:6919:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'SetNameInPrimerList':
macroapi.c:10517:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'SetSeqInPrimerList':
macroapi.c:10538:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'GetCitListsForSeqEntry':
macroapi.c:15443:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
macroapi.c:15441:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'GetPubMLStatus':
macroapi.c:17914:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat':
macroapi.c:24814:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat':
macroapi.c:24937:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat':
macroapi.c:25004:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'FindPosBeforeFeat':
macroapi.c:25301:15: warning: variable 'regulator' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'PerformAutofixInSeqEntry':
macroapi.c:28058:8: warning: unused variable 'num_created' [-Wunused-variable]
macroapi.c: In function 'AddFileDescriptors':
macroapi.c:28453:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
macroapi.c: In function 'PreprocessAddDescriptorListMacro':
macroapi.c:30069:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
macroapi.c: In function 'SummarizeRemoveOutsideAction':
macroapi.c:30940:11: warning: unused variable 'case_insensitive' [-Wunused-variable]
macroapi.c: In function 'GetObjectTableForTabTable':
macroapi.c:35366:63: warning: variable 'last' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'CheckObjTableForExistingText':
macroapi.c:35930:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'FixSuspectProductNamesInEntrezGene':
macroapi.c:38178:18: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
macroapi.c: At top level:
macroapi.c:1189:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function]
macroapi.c:2760:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function]
macroapi.c:4543:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function]
macroapi.c:5435:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function]
macroapi.c:10224:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function]
macroapi.c:15632:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function]
macroapi.c:35102:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function]
macroapi.c:20392:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function]
macroapi.c:26150:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function]
macroapi.c: In function 'GetFeatureListForProteinBioseq':
macroapi.c:34248:10: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'ConvertToBond':
macroapi.c:24176:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'ConvertToSite':
macroapi.c:24223:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'SetAuthorListFromString':
macroapi.c:14074:30: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'CaptureRefBlockSerialNumbers':
macroapi.c:15424:26: warning: 'ppr' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'SetFieldValueForObjectEx':
macroapi.c:13405:29: warning: 'ipp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c:13352:21: note: 'ipp' was declared here
macroapi.c:13350:21: warning: 'cpp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'SetDBxrefForBioSource':
macroapi.c:22815:12: warning: 'dbtag' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpedit.c
salpedit.c: In function 'SeqAlignInsert':
salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
salpedit.c: At top level:
salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function]
salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function]
salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function]
salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function]
salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function]
salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function]
salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function]
salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function]
salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function]
salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function]
salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function]
salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function]
salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function]
salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function]
salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function]
salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function]
salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function]
salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function]
salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function]
salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpstat.c
salpstat.c: In function 'DenseSegStats':
salpstat.c:310:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
salpstat.c: In function 'SeqAlignScoreFix':
salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wuninitialized]
salpstat.c: In function 'DenseSegStats':
salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wuninitialized]
salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wuninitialized]
salpstat.c: In function 'SeqAlignWindowScoreFN':
salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wuninitialized]
salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wuninitialized]
salpstat.c: In function 'SeqAlignWindowScore':
salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpacc.c
salpacc.c: In function 'SeqAlignStrand':
salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable]
salpacc.c: In function 'SeqAlignStop':
salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wuninitialized]
salpacc.c:495:17: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
salpacc.c: In function 'SeqAlignMolType':
salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salprop.c
salprop.c: In function 'CopySeqLocFromSeqAlign':
salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
salprop.c: In function 'FeatListToProp':
salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable]
salprop.c: At top level:
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salprop.c: In function 'ApplyNewSeqFeat':
salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
salprop.c:514:17: note: 'stop' was declared here
salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized]
salprop.c:674:17: note: 'sfp' was declared here
salprop.c:734:23: warning: 'ppp.p5' may be used uninitialized in this function [-Wuninitialized]
salprop.c:679:17: note: 'ppp.p5' was declared here
salprop.c:737:29: warning: 'ppp.p3' may be used uninitialized in this function [-Wuninitialized]
salprop.c:679:17: note: 'ppp.p3' was declared here
salprop.c:861:33: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
salprop.c: In function 'MergeFunc':
salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wuninitialized]
salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salsap.c
salsap.c: In function 'DenseDiagToDenseSegFunc':
salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable]
salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable]
salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable]
salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable]
salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
salsap.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function]
salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function]
salsap.c: In function 'CleanStrandsSeqAlign':
salsap.c:1605:32: warning: 'dim' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1605:32: warning: 'startp' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
salsap.c: In function 'LocalAlignToSeqAnnotDimn':
salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wuninitialized]
salsap.c: In function 'multseqalign_from_pairseqalign':
salsap.c:4498:22: warning: 'strandp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salstruc.c
salstruc.c: In function 'data_collect_arrange':
salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable]
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable]
salstruc.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salstruc.c: In function 'next_notemptyline':
salstruc.c:375:19: warning: 'str' may be used uninitialized in this function [-Wuninitialized]
salstruc.c: In function 'data_collect_arrange':
salstruc.c:920:20: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
salstruc.c:872:19: note: 'entityID' was declared here
salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
salstruc.c:1005:17: note: 'entityID' was declared here
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salutil.c
salutil.c: In function 'ReadBufferFromSap':
salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable]
salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'IS_protSeqLoc':
salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'ReplaceSeqIdWithSeqId':
salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'del_ssp_fromid':
salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'checkCDSselect_forprotein':
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
salutil.c: In function 'NoMoreSegGapForOneAlignment':
salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration]
salutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salutil.c: In function 'del_ssp_fromid':
salutil.c:1750:30: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized]
salutil.c: In function 'sesp_to_slp':
salutil.c:1974:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvseq.c
udvseq.c: In function 'UDV_EncodeIdxFeat':
udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
udvseq.c: In function 'UDV_BigEncodeIdxFeat':
udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blocks.c
blocks.c: In function 'IndexBlocks':
blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
blocks.c: In function 'IndexNewBlocks':
blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
blocks.c: In function 'GetBlockOrientation':
blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wuninitialized]
blocks.c: In function 'SAMergeBlocks':
blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1509:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wuninitialized]
blocks.c: In function 'SASplitBlock':
blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:309:4: warning: missing braces around initializer [-Wmissing-braces]
pgppop.c:309:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
pgppop.c: In function 'DDV_WWW_get_CDS_minus':
pgppop.c:578:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
pgppop.c:576:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
pgppop.c: In function 'DDV_WWW_get_CDS_plus':
pgppop.c:700:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
pgppop.c: In function 'GetClrFromClrGlobal':
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
pgppop.c: In function 'DDV_DisplayTopScale':
pgppop.c:1549:7: warning: unused variable 'szBlank' [-Wunused-variable]
pgppop.c: In function 'DDV_GetBLASTCompLine_1':
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
pgppop.c: In function 'DDV_DisplayDefaultAlign':
pgppop.c:3417:13: warning: unused variable 'sabp' [-Wunused-variable]
pgppop.c: In function 'DDV_ShowSeqAlign':
pgppop.c:3760:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable]
pgppop.c:3758:10: warning: unused variable 'szPopSetName' [-Wunused-variable]
pgppop.c: In function 'DDV_PrintPopSetSummary':
pgppop.c:3931:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable]
pgppop.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
pgppop.c:563:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function]
pgppop.c:2090:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function]
pgppop.c:2865:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function]
pgppop.c:2912:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function]
pgppop.c: In function 'DDV_PopDisplay2':
pgppop.c:1246:23: warning: 'pgp2' may be used uninitialized in this function [-Wuninitialized]
pgppop.c:1253:14: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
pgppop.c: In function 'DDV_Print_Sequence':
pgppop.c:1343:38: warning: 'idx' may be used uninitialized in this function [-Wuninitialized]
pgppop.c:1308:9: note: 'idx' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF samutil.c
samutil.c: In function 'DDE_FreeStack':
samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_Add':
samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point]
samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_Prev':
samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_Next':
samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_ShowRow':
samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_AddGapToEndOfAllRows':
samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_RightAddNode':
samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_LeftMergeAndAddNodeList':
samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_RightMergeAndAddNodeList':
samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_ShiftRightBoundaryLeft1':
samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_CreateArraysForDenseSeg':
samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_GetLastVNP':
samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_GetNumResidues':
samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
ddvcolor.c: In function 'DDV_GetColor':
ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable]
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viewmgr.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces]
ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1':
ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2':
ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2':
ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable]
ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable]
ddvcreate.c: In function 'DDV_DisplayNewBLAST':
ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable]
ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4':
ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function]
ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function]
ddvcreate.c: In function 'UAMgrIntUAMsg':
ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:73: note: 'stop_middle' was declared here
ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:60: note: 'start_middle' was declared here
ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here
ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here
ddvcreate.c: In function 'DDV_PopulateDisplayForDisc':
ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c: In function 'UABuildDescriptor2':
ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c: In function 'DDV_DumpSAPInAFile':
ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c: In function 'DDV_ReadSeqBin':
ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF jsavlt.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF needleman.c
needleman.c: In function 'NeedlemanWunschQuadraticByLoc':
needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable]
needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable]
needleman.c: In function 'FetchSequenceByLoc':
needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF txalign.c
txalign.c: In function 'addLinkoutForDefline':
txalign.c:706:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'addLinkoutForBioseq':
txalign.c:774:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'load_align_sum_for_StdSeg':
txalign.c:2748:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
txalign.c: In function 'ShowAlignNodeText2Ex':
txalign.c:3548:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'Tx_PrintDefLine':
txalign.c:4597:7: warning: unused variable 'seqid_length' [-Wunused-variable]
txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath':
txalign.c:5012:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
txalign.c:5016:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
txalign.c:4718:10: warning: unused variable 'ColumnDistance' [-Wunused-variable]
txalign.c:4710:43: warning: unused variable 'sip_list' [-Wunused-variable]
txalign.c:4706:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'FormatScoreFromSeqAlignEx':
txalign.c:5335:25: warning: unused variable 't_adj' [-Wunused-variable]
txalign.c:5334:29: warning: unused variable 'last_t_to' [-Wunused-variable]
txalign.c: In function 'FSFPrintOneDefline':
txalign.c:5443:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'FormatScoreFunc':
txalign.c:5660:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'OOFShowSingleAlignment':
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
txalign.c:6093:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'OOFDisplayTraceBack1':
txalign.c:6581:33: warning: unused variable 'st' [-Wunused-variable]
txalign.c:6581:9: warning: unused variable 'tmp' [-Wunused-variable]
txalign.c: In function 'OOFDisplayTraceBack2':
txalign.c:6655:33: warning: unused variable 'st' [-Wunused-variable]
txalign.c: In function 'FDGetTaxNamesFromBioseq':
txalign.c:6757:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable]
txalign.c: At top level:
txalign.c:630:16: warning: 'getNameInitials' defined but not used [-Wunused-function]
txalign.c:828:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function]
txalign.c:2338:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function]
txalign.c:3433:1: warning: 'get_seq_id' defined but not used [-Wunused-function]
txalign.c: In function 'DrawTextToBuffer':
txalign.c:1761:15: warning: 'HTML_buffer' may be used uninitialized in this function [-Wuninitialized]
txalign.c: In function 'CreateMaskByteStore':
txalign.c:940:4: warning: 'mol' may be used uninitialized in this function [-Wuninitialized]
txalign.c:988:8: note: 'mol' was declared here
txalign.c: In function 'OOFShowSingleAlignment.isra.6':
txalign.c:6048:5: warning: 'dna_line_start' may be used uninitialized in this function [-Wuninitialized]
txalign.c:6089:32: note: 'dna_line_start' was declared here
txalign.c:6048:5: warning: 'pro_line_start' may be used uninitialized in this function [-Wuninitialized]
txalign.c:6089:48: note: 'pro_line_start' was declared here
txalign.c: In function 'find_score_in_align':
txalign.c:2598:33: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized]
txalign.c:2498:20: note: 'smtp' was declared here
txalign.c:2462:11: warning: 't_spp' may be used uninitialized in this function [-Wuninitialized]
txalign.c:2394:23: note: 't_spp' was declared here
txalign.c:2459:14: warning: 'm_spp' may be used uninitialized in this function [-Wuninitialized]
txalign.c:2394:16: note: 'm_spp' was declared here
txalign.c: In function 'ShowAlignNodeText2Ex.isra.7':
txalign.c:2284:11: warning: 'm_len' may be used uninitialized in this function [-Wuninitialized]
txalign.c:3543:10: note: 'm_len' was declared here
txalign.c: In function 'ShowTextAlignFromAnnot3':
txalign.c:1244:13: warning: 'retval' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF fdlobj.c
fdlobj.c: In function 'BlastDefLineSetAsnRead':
fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
fdlobj.c: In function 'BlastDefLineAsnRead':
fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA':
alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value]
alignmgr2.c: In function 'AlnMgr2CopySeg':
alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA':
alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c: In function 'AlnMgr2SetUnaln':
alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable]
alignmgr2.c: In function 'AlnMgr2PrintSeqAlign':
alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable]
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable]
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value]
alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign':
alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable]
alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable]
alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function]
alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function]
alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function]
alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function]
alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc':
alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2IndexLite':
alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6099:27: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength':
alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6177:15: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA':
alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA':
alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetAlnLength':
alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6757:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5757:84: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:5808:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli':
alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks':
alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthBlockRange':
alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow':
alignmgr2.c:6909:40: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNextLengthBit':
alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange':
alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7169:9: warning: 'aligncoords' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign':
alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq':
alignmgr2.c:7695:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetSubAlign':
alignmgr2.c:8248:34: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2FillInUnaligned':
alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alnread.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function 'DoesSeqStringMatchBsp':
acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:134:12: warning: 's_IsGapChar' defined but not used [-Wunused-function]
aceread.c:247:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function]
aceread.c:276:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function]
aceread.c:3308:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function]
aceread.c: In function 's_ReadContig':
aceread.c:1477:38: warning: 'linestring' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdentrez.c
cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function]
cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function]
cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function]
cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable]
cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function]
cdentrez.c: In function 'CdEntrezMergeTerm':
cdentrez.c:2665:27: warning: 'total' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdLinkUidList':
cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdTermListByTerm':
cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdEntrezFindTerm':
cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdEntTLAddTerm':
cdentrez.c:1895:33: warning: 'total' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c:1787:13: note: 'total' was declared here
cdentrez.c: In function 'CdEntMedlineEntryListGet':
cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdromlib.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces]
cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces]
cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces]
cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces]
cdnewlib.c: In function 'cd3_CdDocAsnOpen':
cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable]
cdnewlib.c: In function 'CdDevice_Init':
cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable]
cdnewlib.c: At top level:
cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function]
cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function]
cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function]
cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function]
cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable]
cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable]
cdnewlib.c: In function 'UnixFileGets':
cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c: In function 'trmncmp':
cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c: In function 'UidIndex_Lookup':
cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:1986:30: warning: 'mid' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c: In function 'TrmIndex_Lookup':
cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:2166:12: warning: 'd' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:2166:24: warning: 'mid' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF casn.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdconfig.c
cdconfig.c: In function 'ChangeMedia':
cdconfig.c:941:29: warning: statement with no effect [-Wunused-value]
cdconfig.c:960:17: warning: statement with no effect [-Wunused-value]
cdconfig.c: At top level:
cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function]
cdconfig.c: In function 'EntrezInfoMerge':
cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objentr.c
objentr.c: In function 'DocSumAsnRead':
objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable]
objentr.c: At top level:
objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function]
objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function]
objentr.c: In function 'EntrezInfoAsnRead':
objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wuninitialized]
objentr.c:241:17: note: 'div' was declared here
objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wuninitialized]
objentr.c:240:18: note: 'link' was declared here
objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wuninitialized]
objentr.c:239:19: note: 'fld' was declared here
objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wuninitialized]
objentr.c:238:18: note: 'tinf' was declared here
objentr.c:856:16: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
objentr.c:824:7: note: 'i' was declared here
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibbutns.c
vibbutns.c: In function 'Nlm_LoadButtonData':
vibbutns.c:117:5: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_GetButtonData':
vibbutns.c:133:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonDefault':
vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_NewButton.isra.5':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibextra.c
vibextra.c: In function 'Nlm_RGB2HSL.constprop.2':
vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibfiles.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibforms.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibgroup.c
vibgroup.c: In function 'Nlm_LoadGroupData':
vibgroup.c:142:5: warning: statement with no effect [-Wunused-value]
vibgroup.c: In function 'Nlm_GetGroupData':
vibgroup.c:159:7: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viblists.c
viblists.c: In function 'Nlm_LoadListData':
viblists.c:220:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListData':
viblists.c:233:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_GetListData':
viblists.c:250:7: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibmenus.c
vibmenus.c: In function 'Nlm_LoadMenuData':
vibmenus.c:193:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuData':
vibmenus.c:210:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadItemData':
vibmenus.c:230:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetItemData':
vibmenus.c:243:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetItemData':
vibmenus.c:261:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadChoiceData':
vibmenus.c:283:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetChoiceData':
vibmenus.c:296:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetChoiceData':
vibmenus.c:313:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadMenuBarData':
vibmenus.c:331:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuBarData':
vibmenus.c:363:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
vibprmpt.c: In function 'Nlm_LoadPromptData':
vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_GetPromptData':
vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_NewPrompt':
vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibsbars.c
vibsbars.c: In function 'Nlm_SetBarData':
vibsbars.c:191:3: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_GetBarData':
vibsbars.c:208:7: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_LoadBarData':
vibsbars.c:429:3: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibslate.c
vibslate.c: In function 'Nlm_LoadSlateData':
vibslate.c:247:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetSlateData':
vibslate.c:260:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetSlateData':
vibslate.c:277:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadPanelData':
vibslate.c:305:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelData':
vibslate.c:317:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelData':
vibslate.c:329:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadDisplayData':
vibslate.c:351:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetDisplayData':
vibslate.c:364:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetDisplayData':
vibslate.c:381:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelExtra':
vibslate.c:407:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelExtra':
vibslate.c:430:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateVertScrollAction':
vibslate.c:1003:11: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat]
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_GetPanelOffset':
vibslate.c:1624:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat]
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_RegisterRow':
vibslate.c:3400:9: warning: statement with no effect [-Wunused-value]
vibslate.c:3410:13: warning: statement with no effect [-Wunused-value]
vibslate.c:3426:7: warning: statement with no effect [-Wunused-value]
vibslate.c:3454:7: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibtexts.c
vibtexts.c: In function 'Nlm_LoadTextData':
vibtexts.c:154:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetTextData':
vibtexts.c:167:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetTextData':
vibtexts.c:184:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetPassword':
vibtexts.c:312:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPassword':
vibtexts.c:324:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPasswordLength':
vibtexts.c:333:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_NewDialogText':
vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewPasswordText':
vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewHiddenText':
vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialText':
vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewScrollText':
vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewDialogTextWithFont':
vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialTextWithFont':
vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibutils.c
vibutils.c: In function 'Nlm_SetString':
vibutils.c:506:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetString':
vibutils.c:526:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LinkIn':
vibutils.c:2385:5: warning: statement with no effect [-Wunused-value]
vibutils.c:2389:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2392:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2401:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2404:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2409:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2416:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadGraphicData':
vibutils.c:2462:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadBoxData':
vibutils.c:2492:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_RemoveLink':
vibutils.c:2578:11: warning: statement with no effect [-Wunused-value]
vibutils.c:2586:3: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetGraphicData':
vibutils.c:2922:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetGraphicData':
vibutils.c:2939:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetBoxData':
vibutils.c:2954:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetBoxData':
vibutils.c:2971:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetExtraData':
vibutils.c:2996:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetExtraData':
vibutils.c:3018:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibwndws.c
vibwndws.c: In function 'Nlm_LoadWindowData':
vibwndws.c:411:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetWindowData':
vibwndws.c:424:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_GetWindowData':
vibwndws.c:441:7: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
ncbidraw.c: In function 'Nlm_SetFontData':
ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontData':
ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_FindFont':
ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_ReuseFont':
ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontSpec':
ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_AssignPrinterFont':
ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drawing.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF picture.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viewer.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF document.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF table.c
table.c: In function 'SetCellRec':
table.c:136:9: warning: statement with no effect [-Wunused-value]
table.c:138:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetCellRec':
table.c:175:9: warning: statement with no effect [-Wunused-value]
table.c:177:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetColRec':
table.c:231:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'DrawTable':
table.c:314:9: warning: statement with no effect [-Wunused-value]
table.c:317:5: warning: statement with no effect [-Wunused-value]
table.c:318:5: warning: statement with no effect [-Wunused-value]
table.c:319:5: warning: statement with no effect [-Wunused-value]
table.c:334:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordColumn':
table.c:380:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordSegment':
table.c:428:7: warning: statement with no effect [-Wunused-value]
table.c:440:9: warning: statement with no effect [-Wunused-value]
table.c:442:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'CopyToHandle':
table.c:510:7: warning: statement with no effect [-Wunused-value]
table.c:518:7: warning: statement with no effect [-Wunused-value]
table.c:527:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'AppendTableText':
table.c:632:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetTableText':
table.c:710:13: warning: statement with no effect [-Wunused-value]
table.c:718:11: warning: statement with no effect [-Wunused-value]
table.c:727:9: warning: statement with no effect [-Wunused-value]
table.c:743:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'TableTextLength':
table.c:783:13: warning: statement with no effect [-Wunused-value]
table.c:791:11: warning: statement with no effect [-Wunused-value]
table.c:800:9: warning: statement with no effect [-Wunused-value]
table.c: In function 'ResetTable':
table.c:1090:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF palette.c
palette.c: In function 'DrawPalette':
palette.c:116:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'AppendPalette':
palette.c:161:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'SetPaletteValue':
palette.c:216:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'GetPaletteValue':
palette.c:240:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'PaletteClick':
palette.c:306:7: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF diagnost.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF image.c
image.c: In function 'Nlm_AllocateImage':
image.c:207:28: warning: statement with no effect [-Wunused-value]
image.c:274:3: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_DeleteImage':
image.c:691:9: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_UnlockPixMapImage':
image.c:804:7: warning: statement with no effect [-Wunused-value]
image.c: In function 'ShiftXMask':
image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pictur3d.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d1.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d2.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d3.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d4.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d5.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viewer3d.c
viewer3d.c: In function 'DrawViewer3D':
viewer3d.c:521:7: warning: statement with no effect [-Wunused-value]
viewer3d.c: In function 'Nlm_RedrawPrim3D':
viewer3d.c:995:3: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibmouse.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF imagelst.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF treeview.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable]
shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable]
shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable]
shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable]
shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable]
shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable]
shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable]
shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable]
shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable]
shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable]
shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable]
shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable]
shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable]
shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable]
shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable]
shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable]
shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable]
shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable]
shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable]
shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable]
shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable]
shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable]
shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable]
shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable]
shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable]
shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable]
shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable]
shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable]
shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable]
shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable]
shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
vibbutns.c: In function 'Nlm_LoadButtonData':
vibbutns.c:117:5: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_GetButtonData':
vibbutns.c:133:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonDefault':
vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_NewButton.isra.5':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized]
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
vibextra.c: In function 'Nlm_RGB2HSL.constprop.2':
vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized]
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
vibgroup.c: In function 'Nlm_LoadGroupData':
vibgroup.c:142:5: warning: statement with no effect [-Wunused-value]
vibgroup.c: In function 'Nlm_GetGroupData':
vibgroup.c:159:7: warning: statement with no effect [-Wunused-value]
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
viblists.c: In function 'Nlm_LoadListData':
viblists.c:220:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListData':
viblists.c:233:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_GetListData':
viblists.c:250:7: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
vibmenus.c: In function 'Nlm_LoadMenuData':
vibmenus.c:193:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuData':
vibmenus.c:210:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadItemData':
vibmenus.c:230:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetItemData':
vibmenus.c:243:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetItemData':
vibmenus.c:261:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadChoiceData':
vibmenus.c:283:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetChoiceData':
vibmenus.c:296:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetChoiceData':
vibmenus.c:313:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadMenuBarData':
vibmenus.c:331:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuBarData':
vibmenus.c:363:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
vibprmpt.c: In function 'Nlm_LoadPromptData':
vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_GetPromptData':
vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_NewPrompt':
vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value]
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
vibsbars.c: In function 'Nlm_SetBarData':
vibsbars.c:191:3: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_GetBarData':
vibsbars.c:208:7: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_LoadBarData':
vibsbars.c:429:3: warning: statement with no effect [-Wunused-value]
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
vibslate.c: In function 'Nlm_LoadSlateData':
vibslate.c:247:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetSlateData':
vibslate.c:260:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetSlateData':
vibslate.c:277:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadPanelData':
vibslate.c:305:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelData':
vibslate.c:317:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelData':
vibslate.c:329:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadDisplayData':
vibslate.c:351:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetDisplayData':
vibslate.c:364:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetDisplayData':
vibslate.c:381:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelExtra':
vibslate.c:407:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelExtra':
vibslate.c:430:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateVertScrollAction':
vibslate.c:1003:11: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat]
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_GetPanelOffset':
vibslate.c:1624:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat]
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_Set3DColorMap':
vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable]
vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_RegisterRow':
vibslate.c:3400:9: warning: statement with no effect [-Wunused-value]
vibslate.c:3410:13: warning: statement with no effect [-Wunused-value]
vibslate.c:3426:7: warning: statement with no effect [-Wunused-value]
vibslate.c:3454:7: warning: statement with no effect [-Wunused-value]
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
vibtexts.c: In function 'Nlm_LoadTextData':
vibtexts.c:154:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetTextData':
vibtexts.c:167:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetTextData':
vibtexts.c:184:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetPassword':
vibtexts.c:312:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPassword':
vibtexts.c:324:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPasswordLength':
vibtexts.c:333:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_NewDialogText':
vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewPasswordText':
vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewHiddenText':
vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialText':
vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewScrollText':
vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewDialogTextWithFont':
vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialTextWithFont':
vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value]
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
vibutils.c: In function 'Nlm_SetString':
vibutils.c:506:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetString':
vibutils.c:526:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LinkIn':
vibutils.c:2385:5: warning: statement with no effect [-Wunused-value]
vibutils.c:2389:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2392:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2401:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2404:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2409:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2416:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadGraphicData':
vibutils.c:2462:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadBoxData':
vibutils.c:2492:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_RemoveLink':
vibutils.c:2578:11: warning: statement with no effect [-Wunused-value]
vibutils.c:2586:3: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetGraphicData':
vibutils.c:2922:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetGraphicData':
vibutils.c:2939:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetBoxData':
vibutils.c:2954:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetBoxData':
vibutils.c:2971:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetExtraData':
vibutils.c:2996:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetExtraData':
vibutils.c:3018:5: warning: statement with no effect [-Wunused-value]
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
vibwndws.c: In function 'Nlm_LoadWindowData':
vibwndws.c:411:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetWindowData':
vibwndws.c:424:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_GetWindowData':
vibwndws.c:441:7: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: At top level:
vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function]
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
ncbidraw.c: In function 'Nlm_SetFontData':
ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontData':
ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_FindFont':
ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_ReuseFont':
ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontSpec':
ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_AssignPrinterFont':
ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value]
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
table.c: In function 'SetCellRec':
table.c:136:9: warning: statement with no effect [-Wunused-value]
table.c:138:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetCellRec':
table.c:175:9: warning: statement with no effect [-Wunused-value]
table.c:177:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetColRec':
table.c:231:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'DrawTable':
table.c:314:9: warning: statement with no effect [-Wunused-value]
table.c:317:5: warning: statement with no effect [-Wunused-value]
table.c:318:5: warning: statement with no effect [-Wunused-value]
table.c:319:5: warning: statement with no effect [-Wunused-value]
table.c:334:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordColumn':
table.c:380:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordSegment':
table.c:428:7: warning: statement with no effect [-Wunused-value]
table.c:440:9: warning: statement with no effect [-Wunused-value]
table.c:442:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'CopyToHandle':
table.c:510:7: warning: statement with no effect [-Wunused-value]
table.c:518:7: warning: statement with no effect [-Wunused-value]
table.c:527:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'AppendTableText':
table.c:632:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetTableText':
table.c:710:13: warning: statement with no effect [-Wunused-value]
table.c:718:11: warning: statement with no effect [-Wunused-value]
table.c:727:9: warning: statement with no effect [-Wunused-value]
table.c:743:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'TableTextLength':
table.c:783:13: warning: statement with no effect [-Wunused-value]
table.c:791:11: warning: statement with no effect [-Wunused-value]
table.c:800:9: warning: statement with no effect [-Wunused-value]
table.c: In function 'ResetTable':
table.c:1090:5: warning: statement with no effect [-Wunused-value]
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
palette.c: In function 'DrawPalette':
palette.c:116:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'AppendPalette':
palette.c:161:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'SetPaletteValue':
palette.c:216:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'GetPaletteValue':
palette.c:240:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'PaletteClick':
palette.c:306:7: warning: statement with no effect [-Wunused-value]
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
image.c: In function 'Nlm_AllocateImage':
image.c:207:28: warning: statement with no effect [-Wunused-value]
image.c:274:3: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_DeleteImage':
image.c:691:9: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_UnlockPixMapImage':
image.c:804:7: warning: statement with no effect [-Wunused-value]
image.c: In function 'ShiftXMask':
image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
viewer3d.c: In function 'DrawViewer3D':
viewer3d.c:521:7: warning: statement with no effect [-Wunused-value]
viewer3d.c: In function 'Nlm_RedrawPrim3D':
viewer3d.c:995:3: warning: statement with no effect [-Wunused-value]
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function 'OGL_AddCylinder3D':
shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable]
shim3d.c: In function 'OGL_AddText3D':
shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable]
shim3d.c: In function 'OGL_Zoom_DragMA':
shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable]
shim3d.c: In function 'OGL_Hit':
shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default]
shim3d.c: In function 'write_row_callback':
shim3d.c:2911:48: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:2911:48: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
shim3d.c: In function 'SetOGLFont':
shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:2322:28: warning: 'list' may be used uninitialized in this function [-Wuninitialized]
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:40: warning: 'pCz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:34: warning: 'pCy' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:28: warning: 'pCx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:22: warning: 'pNz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:16: warning: 'pNy' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:10: warning: 'pNx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3575:16: warning: 'Nx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3434:6: warning: 'offset' may be used uninitialized in this function [-Wuninitialized]
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF accentr.c
accentr.c: In function 'EntrezBiostrucGet':
accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF accutils.c
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drawseq.c
drawseq.c: In function 'AddFlatNodeSymbol':
drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable]
drawseq.c: In function 'AddAlignBlocks':
drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'AddAlignFeature':
drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable]
drawseq.c: In function 'AddAlignmentMismatch':
drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawRestrictionMap':
drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable]
drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawFeatures':
drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawOneSeqLoc':
drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable]
drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'Label_GData':
drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawEquivAlign':
drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable]
drawseq.c: In function 'load_align_label_rectangle':
drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'PicForAlignNode':
drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable]
drawseq.c: At top level:
drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function]
drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF fea2seg.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF fstyle.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg1.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg2.c
smdlg2.c: In function 'Nlm_CreateDlgGroup':
smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg3.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smtools.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF styleman.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF stylemui.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF glbpic.c
glbpic.c: In function 'label_linear_mark':
glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable]
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable]
glbpic.c: At top level:
glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function]
glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function]
glbpic.c: In function 'get_circle_label_align':
glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wuninitialized]
glbpic.c: In function 'label_circle_mark':
glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2483:11: warning: 'first_left' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2473:10: warning: 'first_top' may be used uninitialized in this function [-Wuninitialized]
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wuninitialized]
glbpic.c: In function 'Draw_Global':
glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:1943:8: note: 'seglen' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF layout.c
layout.c: In function 'LayoutNodeFlat':
layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
layout.c: In function 'layout_uncompressed_group':
layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable]
layout.c: In function 'LayoutFeatNode':
layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable]
layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable]
layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable]
layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable]
layout.c: In function 'LayoutAlignNode':
layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable]
layout.c: At top level:
layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function]
layout.c: In function 'layout_uncompressed_group':
layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wuninitialized]
layout.c: In function 'GroupFeatNode':
layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wuninitialized]
layout.c:594:35: note: 'prev' was declared here
layout.c: In function 'OrderCdsmRNA':
layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wuninitialized]
layout.c:940:15: note: 'm_missed' was declared here
layout.c: In function 'LayoutFeatNode':
layout.c:1447:7: warning: 'p_right' may be used uninitialized in this function [-Wuninitialized]
layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wuninitialized]
layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wuninitialized]
layout.c: In function 'LayoutAlignNode':
layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wuninitialized]
layout.c:2317:27: warning: 'cur_line' may be used uninitialized in this function [-Wuninitialized]
layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF saldist.c
saldist.c: In function 'copy_string':
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
saldist.c: In function 'nss_ref_complength':
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
saldist.c: In function 'nss_pw_complength':
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
saldist.c: In function 'nss_gp_complength':
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
saldist.c: In function 'SortbySimProc':
saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable]
saldist.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable]
saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function]
saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function]
saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function]
saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function]
saldist.c: In function 'writematrixhalf.constprop.5':
saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
saldist.c: In function 'PwDistProc':
saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
saldist.c:1104:19: note: 'vnp' was declared here
saldist.c: In function 'SortbyLenItem':
saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wuninitialized]
saldist.c:2172:28: note: 'mink' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF saled.c
saled.c: In function 'ReadAlignmentForSeqEntry':
saled.c:3325:21: warning: unused variable 'dirty' [-Wunused-variable]
saled.c:3321:21: warning: unused variable 'salp' [-Wunused-variable]
saled.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salfiles.c
salfiles.c: In function 'NewFastaRead':
salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable]
salfiles.c: In function 'ReadAlignmentToStrings':
salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable]
salfiles.c: In function 'MacawRead':
salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable]
salfiles.c: In function 'ReadLocalAlign':
salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable]
salfiles.c: In function 'ImportFromFile':
salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable]
salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable]
salfiles.c: In function 'sesp_to_pept':
salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable]
salfiles.c: In function 'SaveFeatProc':
salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salfiles.c: In function 'CCReadAnythingLoop':
salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
salfiles.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function]
salfiles.c: In function 'CCDownloadProc':
salfiles.c:2363:9: warning: 'new_sep' may be used uninitialized in this function [-Wuninitialized]
salfiles.c: In function 'NewFastaRead.constprop.14':
salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
salfiles.c: In function 'GapFastaRead':
salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wuninitialized]
salfiles.c:654:16: note: 'seqstr' was declared here
salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wuninitialized]
salfiles.c:660:16: note: 'startp' was declared here
salfiles.c: In function 'ReadLocalAlignment':
salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wuninitialized]
salfiles.c:1113:19: note: 'seqvnp' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpanel.c
salpanel.c: In function 'go_to_next_to_draw':
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
salpanel.c: In function 'next_to_draw':
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
salpanel.c: In function 'AssociatePropagatedSubloc':
salpanel.c:3131:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
salpanel.c: In function 'FeaturePropagateForm':
salpanel.c:4670:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
salpanel.c:4665:15: warning: variable 'b' set but not used [-Wunused-but-set-variable]
salpanel.c: In function 'OkToContinueWithFeatureApply':
salpanel.c:6099:14: warning: unused variable 'num_missing' [-Wunused-variable]
salpanel.c: In function 'DoApplyFeatureToAlignment':
salpanel.c:6215:31: warning: unused variable 'found_null' [-Wunused-variable]
salpanel.c: In function 'ApplyFeatureToAlignment':
salpanel.c:6417:31: warning: variable 'b' set but not used [-Wunused-but-set-variable]
salpanel.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salpanel.c:65:14: warning: 'diamondSym' defined but not used [-Wunused-variable]
salpanel.c:68:14: warning: 'ovalSym' defined but not used [-Wunused-variable]
salpanel.c:77:14: warning: 'upTriSym' defined but not used [-Wunused-variable]
salpanel.c:80:14: warning: 'downTriSym' defined but not used [-Wunused-variable]
salpanel.c:86:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable]
salpanel.c:89:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable]
salpanel.c:98:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable]
salpanel.c:101:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable]
salpanel.c:104:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable]
salpanel.c:107:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable]
salpanel.c:110:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable]
salpanel.c:113:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable]
salpanel.c:224:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function]
salpanel.c:5055:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function]
salpanel.c: In function 'draw_feat.isra.16.part.17':
salpanel.c:2183:13: warning: 'col1' may be used uninitialized in this function [-Wuninitialized]
salpanel.c: In function 'on_draw':
salpanel.c:2599:31: warning: 'draw_diff' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salparam.c
salparam.c: In function 'mergelst':
salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'unmergelst':
salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'FormulaDialog':
salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'JK_NTPattern2Ex':
salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'DotPlotBtn':
salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'DotPlotDialog':
salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'DotPlotItem':
salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'SelectSeqFunc':
salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'HighlightSelectionFunc':
salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'PropagateFeatureProc':
salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable]
salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable]
salparam.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salparam.c: In function 'DotPlotBtn':
salparam.c:1950:25: warning: 'sep' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salsa.c
salsa.c: In function 'SelectSubsProc':
salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'SetSeqInfo':
salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable]
salsa.c: In function 'SetupAlignDataSap':
salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'get_bestpos_formerge':
salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable]
salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'CreateSeqAlignViewForm':
salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'AlgEditFunc':
salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable]
salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable]
salsa.c: In function 'OldAlignmentEditor':
salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAnnotAlignEditor':
salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditor':
salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignViewer':
salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop':
salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop2':
salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop3':
salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop4':
salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'InsertSeqProc':
salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable]
salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'SeqAlignBestHit':
salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'SeqAlignStartUpdate':
salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable]
salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable]
salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable]
salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable]
salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'CCNormalizeSeqAlignId':
salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable]
salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable]
salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable]
salsa.c: In function 'ValidateSeqAlignandACCEx':
salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
salsa.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function]
salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function]
salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function]
salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function]
salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function]
salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function]
salsa.c: In function 'ExportFASTAForUnselectedUpdates':
salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'ExportBadAlignments':
salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'SeqAlignBestHit.isra.3':
salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wuninitialized]
salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'BioseqEditMsgFunc':
salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wuninitialized]
salsa.c:890:20: note: 'anp' was declared here
salsa.c: In function 'DeleteProc':
salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'SkipThisWindowProc':
salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqfltr.c
seqfltr.c: In function 'FilterSeq':
seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqgraph.c
seqgraph.c: In function 'EndPointDialogToEndPointValNode':
seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized]
seqgraph.c: In function 'SeqLocGraphViewProc':
seqgraph.c:1136:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized]
seqgraph.c: In function 'MarkPrims':
seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wuninitialized]
seqgraph.c: In function 'CutOffProc':
seqgraph.c:1018:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function]
seqgrphx.c: In function 'FilterMsgFunc':
seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqpcc.c
seqpcc.c: In function 'PCCProc':
seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqanal.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aacomp.c
aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqscrl.c
seqscrl.c: In function 'SeqScrollDataFree':
seqscrl.c:46:5: warning: value computed is not used [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF valdlg.c
valdlg.c: In function 'ClickRulesDoc':
valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable]
valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable]
valdlg.c: In function 'UpdateRuleList':
valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable]
valdlg.c: In function 'SaveRuleChanges':
valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable]
valdlg.c: In function 'LaunchCommentRulesEditor':
valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vsm.c
vsm.c: In function 'VSMAboutProc':
vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSeqMgrCreateMainWindow':
vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSeqMgrPopulateMain':
vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSMGatherPictProc':
vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable]
vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSMAddPictureToEntity':
vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vsmfile.c
vsmfile.c: In function 'VSMGenericBinAsnOpen':
vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
vsmfile.c: In function 'VSMGenericFastaSave':
vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
vsmfile.c: In function 'VSMFastaProtSaveWithProduct':
vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
vsmfile.c: In function 'VSMSaveSetsAsFiles':
vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vsmutil.c
vsmutil.c: In function 'GetDocPosForError':
vsmutil.c:1657:18: warning: variable 'val' set but not used [-Wunused-but-set-variable]
vsmutil.c: At top level:
vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function]
vsmutil.c:1542:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function]
vsmutil.c: In function 'ContinueProc':
vsmutil.c:2157:19: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'SetVerbosityAndRepopulate':
vsmutil.c:2198:19: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'RevalidateProc':
vsmutil.c:2124:19: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'ClearValidateWindow':
vsmutil.c:613:21: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'CreateValidateWindowExExEx':
vsmutil.c:2521:23: warning: array subscript is above array bounds [-Warray-bounds]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvgraph.c
udvgraph.c: In function 'UDV_click_item':
udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable]
udvgraph.c: In function 'UDV_SendBSPSelectMsg':
udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_helixDNA':
udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'draw_logo':
udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_CDS_minus':
udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_CDS_plus':
udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_panel':
udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable]
udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable]
udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable]
udvgraph.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function]
udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function]
udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function]
udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function]
udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function]
udvgraph.c: In function 'UDV_GetCurrentDispRange':
udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c: In function 'UDV_Draw_features':
udvgraph.c:3203:23: warning: 'idx6' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3203:23: warning: 'idx5' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3196:11: warning: 'idx4' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3189:23: warning: 'idx3' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3189:23: warning: 'idx2' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3182:12: warning: 'idx1' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3226:11: warning: 'stop_x2' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3226:11: warning: 'stop_x' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c: In function 'UDV_ClickProc':
udvgraph.c:1458:21: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvopen.c
udvopen.c: In function 'UDV_FileOpen':
udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable]
udvopen.c: In function 'UDV_CreateListBioseqDlg':
udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress]
udvopen.c: In function 'UDV_FOpenCancelProc':
udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized]
udvopen.c: In function 'UDV_analyze_SEP_for_open':
udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wuninitialized]
udvopen.c: In function 'UDV_FOpenAcceptProc':
udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvpanel.c
udvpanel.c: In function 'UDV_GotoBtnProc':
udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable]
udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
udvpanel.c: In function 'CreateMainControls':
udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
udvpanel.c: In function 'UDV_SearchFeatForKey':
udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
udvpanel.c: At top level:
udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function]
udvpanel.c: In function 'InitFeaturesListDlg':
udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
dotvibrant.c: In function 'DOT_DisplayHits':
dotvibrant.c:564:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_VscrlProc':
dotvibrant.c:918:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_HscrlProc':
dotvibrant.c:972:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_VCrossHairs':
dotvibrant.c:1402:10: warning: unused variable 'cursor_size' [-Wunused-variable]
dotvibrant.c: In function 'DOT_HCrossHairs':
dotvibrant.c:1427:9: warning: unused variable 'cursor_size' [-Wunused-variable]
dotvibrant.c: In function 'DOT_MoveCrossHairs':
dotvibrant.c:1453:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1452:10: warning: unused variable 'cursor_size' [-Wunused-variable]
dotvibrant.c: In function 'DOT_DrawXAxis':
dotvibrant.c:1532:38: warning: unused variable 'title' [-Wunused-variable]
dotvibrant.c: In function 'DOT_DrawYAxis':
dotvibrant.c:1642:38: warning: unused variable 'title' [-Wunused-variable]
dotvibrant.c:1641:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_SVDisplayDiags':
dotvibrant.c:1770:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1770:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1766:22: warning: variable 'width' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1765:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1765:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1762:28: warning: unused variable 'cutoff' [-Wunused-variable]
dotvibrant.c:1760:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_FillNewSeqBufs':
dotvibrant.c:2197:19: warning: unused variable 'alp' [-Wunused-variable]
dotvibrant.c: In function 'DOT_InitCInfo':
dotvibrant.c:2258:14: warning: unused variable 'colBuf' [-Wunused-variable]
dotvibrant.c: In function 'DOT_SVDisplaySequence':
dotvibrant.c:2379:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable]
dotvibrant.c:2367:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:2364:14: warning: unused variable 'prot_threshold' [-Wunused-variable]
dotvibrant.c:2350:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_SVClickProc':
dotvibrant.c:2807:17: warning: unused variable 'handled' [-Wunused-variable]
dotvibrant.c: In function 'DOT_ResizeFeatWindow':
dotvibrant.c:3016:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3016:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3016:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ResizeSequenceWindow':
dotvibrant.c:3098:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3098:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3095:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_HideFeatDlg':
dotvibrant.c:3745:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_SVBuildDiagViewer':
dotvibrant.c:4031:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4029:28: warning: unused variable 'str2' [-Wunused-variable]
dotvibrant.c:4029:13: warning: unused variable 'str1' [-Wunused-variable]
dotvibrant.c:4022:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4022:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_UpdateDataRects':
dotvibrant.c:4166:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4166:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_MsgFunc':
dotvibrant.c:4215:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ReleaseProc':
dotvibrant.c:4373:32: warning: unused variable 'yaxis_incr' [-Wunused-variable]
dotvibrant.c:4373:15: warning: unused variable 'xaxis_incr' [-Wunused-variable]
dotvibrant.c:4371:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4370:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_StartDOTPLOT':
dotvibrant.c:4891:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_DoZoom':
dotvibrant.c:5106:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ZoomProc':
dotvibrant.c:5204:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'AlnMgr2GetNextLine':
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
dotvibrant.c: In function 'DOT_GetAlign':
dotvibrant.c:5332:44: warning: variable 'n' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_FillAlignInfoPointer':
dotvibrant.c:5565:16: warning: unused variable 'i' [-Wunused-variable]
dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer':
dotvibrant.c:5681:16: warning: unused variable 'i' [-Wunused-variable]
dotvibrant.c:5680:16: warning: unused variable 'numsaps' [-Wunused-variable]
dotvibrant.c:5678:37: warning: unused variable 'sap_tmp' [-Wunused-variable]
dotvibrant.c: In function 'DOT_DoBlast':
dotvibrant.c:5918:23: warning: unused variable 'eval' [-Wunused-variable]
dotvibrant.c:5917:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
dotvibrant.c:5915:23: warning: unused variable 'entityID' [-Wunused-variable]
dotvibrant.c: In function 'DOT_CreateWindowDetails':
dotvibrant.c:6214:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:6214:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
dotvibrant.c:6207:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ResizeMainWindow':
dotvibrant.c:6273:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_FindAlignment':
dotvibrant.c:6662:29: warning: unused variable 'rb_fixed' [-Wunused-variable]
dotvibrant.c:6662:13: warning: unused variable 'lt_fixed' [-Wunused-variable]
dotvibrant.c:6661:17: warning: variable 'data' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs':
dotvibrant.c:6792:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'SCP_OrganizeAlnsInSet':
dotvibrant.c:6873:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable]
dotvibrant.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
dotvibrant.c:2760:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function]
dotvibrant.c:2954:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function]
dotvibrant.c:3318:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function]
dotvibrant.c:3688:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function]
dotvibrant.c:4213:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function]
dotvibrant.c:4749:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function]
dotvibrant.c:4767:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function]
dotvibrant.c:5281:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function]
dotvibrant.c:5325:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function]
dotvibrant.c:5894:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function]
dotvibrant.c:6346:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function]
dotvibrant.c:6642:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function]
dotvibrant.c: In function 'DOT_GetNthSeqFromAlign':
dotvibrant.c:5072:11: warning: 'spp' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer':
dotvibrant.c:2611:32: warning: 'strand2' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2380:23: note: 'strand2' was declared here
dotvibrant.c:2611:32: warning: 'strand1' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2380:14: note: 'strand1' was declared here
dotvibrant.c:2583:37: warning: 'residue_names' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2378:16: note: 'residue_names' was declared here
dotvibrant.c:2611:32: warning: 's_pos' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:42: note: 's_pos' was declared here
dotvibrant.c:2611:32: warning: 'q_pos' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:35: note: 'q_pos' was declared here
dotvibrant.c:2504:11: warning: 'hit_stop' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:25: note: 'hit_stop' was declared here
dotvibrant.c:2614:32: warning: 'hit_start' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:14: note: 'hit_start' was declared here
dotvibrant.c:2503:16: warning: 'buf_len' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2367:21: note: 'buf_len' was declared here
dotvibrant.c:2545:18: warning: 'is_na' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2361:27: note: 'is_na' was declared here
dotvibrant.c:2503:6: warning: 's' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2357:14: note: 's' was declared here
dotvibrant.c:2626:16: warning: 'q' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2356:14: note: 'q' was declared here
dotvibrant.c: In function 'DOT_MakeMainViewer':
dotvibrant.c:6248:10: warning: 's_stop' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:44: note: 's_stop' was declared here
dotvibrant.c:6248:10: warning: 's_start' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:35: note: 's_start' was declared here
dotvibrant.c:6248:10: warning: 'q_stop' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:27: note: 'q_stop' was declared here
dotvibrant.c:6248:10: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:18: note: 'q_start' was declared here
dotvibrant.c:6248:10: warning: 'sname' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6208:35: note: 'sname' was declared here
dotvibrant.c:6248:10: warning: 'qname' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6208:23: note: 'qname' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
dlgutil1.c: In function 'IsAuthList':
dlgutil1.c:3008:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
dlgutil1.c: In function 'TestAuthorDialog':
dlgutil1.c:3357:20: warning: unused variable 'cp' [-Wunused-variable]
dlgutil1.c: In function 'TestIntervalEditor':
dlgutil1.c:5318:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable]
dlgutil1.c:5317:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable]
dlgutil1.c:5316:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable]
dlgutil1.c: In function 'CreateStandardEditMenu':
dlgutil1.c:9189:8: warning: variable 'i' set but not used [-Wunused-but-set-variable]
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
dlgutil1.c:8061:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function]
dlgutil1.c:8378:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
dlgutil2.c: In function 'CreateImportFields':
dlgutil2.c:1401:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars':
dlgutil2.c:3532:11: warning: variable 'y' set but not used [-Wunused-but-set-variable]
dlgutil2.c:3532:8: warning: variable 'x' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'GetTableDisplayCell':
dlgutil2.c:3931:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'NewCreateInferenceDialog':
dlgutil2.c:7600:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'ClickableListOnKey':
dlgutil2.c:10202:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'GetSelectedClickableListText':
dlgutil2.c:10874:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'AutomatchFeatures':
dlgutil2.c:13840:36: warning: variable 's3' set but not used [-Wunused-but-set-variable]
dlgutil2.c: At top level:
dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function]
dlgutil2.c:8577:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function]
dlgutil2.c:10039:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function]
dlgutil2.c:10059:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function]
dlgutil2.c:11993:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
e2trmlst.c: In function 'ReadAFew':
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF e2docsum.c
e2docsum.c: In function 'FormatCdsSeq':
e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'FetchSequence':
e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable]
e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'SaveDocsumProject':
e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'RetrieveGeneration':
e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'SetupMenus':
e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable]
e2docsum.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable]
e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function]
e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
asn2graphic.c: In function 'ParseFilterItem':
asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable]
asn2graphic.c: In function 'GeneProductsLayoutInternal':
asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable]
asn2graphic.c: In function 'ScaleSntDrawProc':
asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable]
asn2graphic.c: In function 'GphSentProc':
asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
asn2graphic.c: In function 'ProcessRows':
asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wuninitialized]
asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wuninitialized]
asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF medview.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bspview.c
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbfview.c
gbfview.c: In function 'RelModeFailText':
gbfview.c:1004:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable]
gbfview.c: In function 'PopulateFlatFile':
gbfview.c:1289:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable]
gbfview.c: In function 'PopulateFasta':
gbfview.c:1714:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
gbfview.c:1646:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
gbfview.c: In function 'PopulateAsnOrXML':
gbfview.c:1969:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable]
gbfview.c:1968:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable]
gbfview.c: At top level:
gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function]
gbfview.c:944:13: warning: 'LookForPubs' defined but not used [-Wunused-function]
gbfview.c:1212:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function]
gbfview.c:1231:13: warning: 'LookForFarProds' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gphview.c
gphview.c: In function 'ReleaseAlignment':
gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'DrawAlignOnAllSequences':
gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'ReleaseDesktop':
gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'AutoScrollGeneName':
gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'DisplayGeneChoiceWindow':
gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'PrintGraphical':
gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable]
gphview.c: In function 'PopulateAsn2GphGraphic':
gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gphdraw.c
gphdraw.c: In function 'GraphSentProc':
gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
gphdraw.c: In function 'DrawGraphToPanel':
gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gxydraw.c
gxydraw.c: In function 'DotXYPlot':
gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wuninitialized]
gxydraw.c:182:19: note: 'xaxiscount' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqpanel.c
seqpanel.c: In function 'FillFeatureInfo':
seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'DrawFeatureCodonLines':
seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'DrawFeature':
seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'GetSeqChapterFeatureInfo':
seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel':
seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable]
seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'PrintTranslatedFrame':
seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'ExportSequenceText':
seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign]
../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr'
seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable]
seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'SeqAlnOnDrag':
seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable]
seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'ResizeSeqEdView':
seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable]
seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx':
seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
seqpanel.c: In function 'WriteAlignmentContiguousToFile':
seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
seqpanel.c: In function 'ReverseSequenceStrandsInAlignment':
seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function]
seqpanel.c: In function 'SeqEdFindPatternDialog':
seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:3810:21: note: 'str_prot' was declared here
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c: In function 'SeqEdExportProc':
seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:4233:17: note: 'seq_pos' was declared here
seqpanel.c: In function 'onDrawSeqPanel':
seqpanel.c:1252:29: warning: 'alnbuf' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:2466:33: note: 'alnbuf' was declared here
seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:2466:25: note: 'seqbuf' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ingengraph.c
ingengraph.c: In function 'Ing_BigEncodeIdxFeat':
ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage':
ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable]
ingengraph.c: In function 'Ing_AddAlignsToOverviewPage':
ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable]
ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable]
ingengraph.c: In function 'Ing_DrawOverviewPage':
ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
ingengraph.c:488:14: warning: unused variable 'Nlm_Visible' [-Wunused-variable]
ingengraph.c: In function 'Ing_PopOverviewPage':
ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable]
ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable]
ingengraph.c: In function 'Ing_PopDetailedPage':
ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable]
ingengraph.c: In function 'Ing_ExploreSegments':
ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable]
ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable]
ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable]
ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable]
ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable]
ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable]
ingengraph.c: In function 'Ing_AddGCRect':
ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable]
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function]
ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function]
ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ingenext.c
ingenext.c: In function 'Ing_KeepTheBestAlignments':
ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_HandleQBlastResults':
ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_HandleResults':
ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_AccepttRNAargsProc':
ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable]
ingenext.c: In function 'Ing_tRNAscanProc':
ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable]
ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable]
ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable]
ingenext.c: In function 'Ing_ReadtRNAConfigFile':
ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_CreateDotMatrixForm':
ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_RunSpidey':
ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable]
ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable]
ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable]
ingenext.c: In function 'Ing_ReadmRNAs_ext':
ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_DeleteInsertInGenomic':
ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable]
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable]
ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable]
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable]
ingenext.c: In function 'Ing_PrintSpideyReport':
ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_PrintBlastReport':
ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable]
ingenext.c:3850:18: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_PopulateReport':
ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable]
ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable]
ingenext.c: In function 'Ing_ResizeReportWindow':
ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function]
ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable]
ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable]
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wuninitialized]
ingenext.c: In function 'Ing_ReportClickProc':
ingenext.c:4287:21: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized]
ingenext.c:4262:22: note: 'nmismatches' was declared here
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wuninitialized]
ingenext.c:3197:34: warning: 'mstart' may be used uninitialized in this function [-Wuninitialized]
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2681:13: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ingenwin.c
ingenwin.c: In function 'Ing_PopulateDetailedPage':
ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable]
ingenwin.c: In function 'Ing_DoRange':
ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_PopulateCpG':
ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ResizeCpGWindow':
ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_PopulateMotif':
ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable]
ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ResizeMotifWindow':
ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable]
ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ShowComplexity':
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
ingenwin.c: In function 'Ing_CreateNewFeature':
ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable]
ingenwin.c: In function 'Ing_GetAlignmentIntervals':
ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable]
ingenwin.c: In function 'Ing_OldGetAlignmentIntervals':
ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable]
ingenwin.c: In function 'Ing_OldMakeLocListFromSAP':
ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable]
ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable]
ingenwin.c: In function 'Ing_OM_MsgFunc':
ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress]
ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable]
ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable]
ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable]
ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable]
ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable]
ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable]
ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable]
ingenwin.c: In function 'Ing_MoveCursor':
ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_FeatViewerClickProc':
ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable]
ingenwin.c: In function 'Ing_SequenceClickProc':
ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ReadInBlastAsn':
ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable]
ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable]
ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable]
ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable]
ingenwin.c: In function 'Ing_ParseSeqIdFile':
ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable]
ingenwin.c: In function 'Ing_ReadInFeatureTable':
ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_AssembleGenscanInfo':
ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable]
ingenwin.c: In function 'Ing_ReadInGenscan':
ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable]
ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable]
ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable]
ingenwin.c: In function 'Ing_AssembleTabDelimited':
ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable]
ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable]
ingenwin.c: In function 'Ing_ReadInTabDelimited':
ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable]
ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable]
ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable]
ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable]
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable]
ingenwin.c: In function 'Ing_FileOpenMain':
ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable]
ingenwin.c: In function 'Ing_ResizeMainWindow':
ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_OpenFromFileORNetwork':
ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_EditFeature':
ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_MarkSeqAnnot':
ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable]
ingenwin.c: In function 'Ing_CreateMismatchedDialog':
ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain]
ingenwin.c: In function 'Ing_PropagateClickProc':
ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable]
ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable]
ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable]
ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable]
ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable]
ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable]
ingenwin.c: In function 'Ing_PrintCompProteins':
ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable]
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable]
ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable]
ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable]
ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_DoPropagate':
ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable]
ingenwin.c: In function 'Ing_GetFromNetwork':
ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable]
ingenwin.c: In function 'Ing_SetupMainWindow':
ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable]
ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable]
ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable]
ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable]
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function]
ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function]
ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function]
ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function]
ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function]
ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function]
ingenwin.c: In function 'Ing_ReplaceMismatchedProc':
ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:5137:17: note: 'j' was declared here
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3290:12: warning: 'strand' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:3255:17: note: 'strand' was declared here
ingenwin.c: In function 'Ing_KozakProc':
ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_SignalPeptideProc':
ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_RepeatsProc':
ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_PolyAProc':
ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_CpGProc':
ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF macrodlg.c
macrodlg.c: In function 'CloseMacroEditorWindowProc':
macrodlg.c:99:11: warning: unused variable 'do_remove' [-Wunused-variable]
macrodlg.c: In function 'ExistingTextDialog':
macrodlg.c:1908:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SourceQualChoiceDialog':
macrodlg.c:3725:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable]
macrodlg.c:3725:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
macrodlg.c:3725:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
macrodlg.c:3725:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SourceConstraintDialog':
macrodlg.c:3963:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
macrodlg.c:3963:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
macrodlg.c:3963:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'CDSGeneProtQualConstraintDialog':
macrodlg.c:4277:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
macrodlg.c:4277:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
macrodlg.c:4277:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'FeatureFieldTypeFromComplexConstraintType':
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_seqid' not handled in switch [-Wswitch]
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_string' not handled in switch [-Wswitch]
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_loc' not handled in switch [-Wswitch]
macrodlg.c: In function 'TestApplyActionDialog':
macrodlg.c:12680:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'TestEditActionDialog':
macrodlg.c:12854:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'TestRemoveOutsideActionDialog':
macrodlg.c:13012:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'AddMacroActions':
macrodlg.c:19633:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'PointerToSampleDialog':
macrodlg.c:19769:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SampleDialogCopy':
macrodlg.c:19889:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable]
macrodlg.c:19889:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SingleMacroAcceptButton':
macrodlg.c:21177:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable]
macrodlg.c:21177:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'LaunchMacroTemplateEditor':
macrodlg.c:22877:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable]
macrodlg.c: At top level:
macrodlg.c:9778:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function]
macrodlg.c: In function 'ApplyProductUpdateTableBtn':
macrodlg.c:26278:15: warning: 'lip' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c: In function 'RemoveSequencesActionDialog':
macrodlg.c:6490:15: warning: 'p' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c: In function 'ActionToSingleMacroActionForm':
macrodlg.c:21387:6: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c: In function 'BuildEditMacroActionWindow':
macrodlg.c:15004:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c:14910:47: note: 'indexer_only_group' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF biosrc.c
biosrc.c: In function 'CreateBioSourceDialog':
biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
biosrc.c: At top level:
biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function]
biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function]
biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function]
biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function]
biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdrgn.c
cdrgn.c: In function 'ProductToSeqLocPtr':
cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable]
cdrgn.c: In function 'CreateCodeBreakAlist':
cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog':
cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable]
cdrgn.c: In function 'PopulateAAPopup':
cdrgn.c:7044:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
cdrgn.c: At top level:
cdrgn.c:2174:13: warning: 'AccessionToGi' defined but not used [-Wunused-function]
cdrgn.c:6253:14: warning: 'check_rna_type' defined but not used [-Wunused-function]
cdrgn.c:6330:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function]
cdrgn.c:6773:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function]
cdrgn.c:6792:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function]
cdrgn.c:6854:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF import.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pubdesc.c
pubdesc.c: In function 'SetPubdescImportExportItems':
pubdesc.c:2859:37: warning: comparison between pointer and integer [enabled by default]
pubdesc.c: In function 'MakeReplaceAuthorsForm':
pubdesc.c:4289:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable]
pubdesc.c: In function 'DisplayDocSum':
pubdesc.c:4851:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable]
pubdesc.c: At top level:
pubdesc.c:5363:13: warning: 'Quit' defined but not used [-Wunused-function]
pubdesc.c:5099:14: warning: 'AddAll' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqsub.c
seqsub.c: In function 'SeqSubmitFromTemplateEditor':
seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mapgene.c
mapgene.c: In function 'load_new_align':
mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable]
mapgene.c: In function 'figure_loc_by_position':
mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable]
mapgene.c: In function 'cvt_loc_for_single_gene':
mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable]
mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable]
mapgene.c: In function 'print_header_for_center':
mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
mapgene.c: In function 'PrintGeneticMarkerForOneMap':
mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
mapgene.c: At top level:
mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function]
mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function]
mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function]
mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function]
mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function]
mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function]
mapgene.c: In function 'PrintContigForOneMap':
mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wuninitialized]
mapgene.c:3152:7: note: 'yac_num' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prtgene.c
prtgene.c: In function 'print_store_for_html':
prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable]
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvclick.c
ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD':
ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
ddvclick.c: In function 'DDV_SendBSPSelectMsg':
ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
ddvclick.c: In function 'DDV_DragProc':
ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ddvclick.c: In function 'DDV_HoldProc':
ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable]
ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function]
ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function]
ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function]
ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function]
ddvclick.c: In function 'DDV_GetSeqNameGivenRow':
ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
ddvclick.c: In function 'DDV_SendBSPSelectMsg.constprop.4':
ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wuninitialized]
ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized]
ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
ddvgraph.c: In function 'DDV_DrawSequence':
ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable]
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvopen.c
ddvopen.c: In function 'DDV_GetAndCheckSeqAlign':
ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_FOpenAcceptProc':
ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_NetOpen_okProc':
ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_ImportBioseqDlg':
ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_HideDlg':
ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ddvopen.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function]
ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function]
ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
ddvpanel.c: In function 'DDV_CreateViewerPanel':
ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
ddvpanel.c: In function 'DDV_DispStyles_OkProc':
ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable]
ddvpanel.c: In function 'DDV_ExportTexte':
ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable]
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function]
ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function]
ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function]
ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function]
ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function]
ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function]
ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function]
ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function]
ddvpanel.c: In function 'DDVExportTexteOkProc':
ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wuninitialized]
ddvpanel.c: In function 'DDV_SortPGPLineNum':
ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized]
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF corematx.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dvncode.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
objmmdb1.c: In function 'BiostrucAsnRead':
objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucIdFree':
objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucIdAsnRead':
objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucSetAsnRead':
objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucAnnotSetAsnRead':
objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead':
objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucDescrFree':
objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucHistoryAsnRead':
objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucReplaceAsnRead':
objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree':
objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucSourceAsnRead':
objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead':
objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucGraphAsnRead':
objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiomolDescrFree':
objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ResidueGraphAsnRead':
objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'MoleculeGraphAsnRead':
objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'InterResidueBondAsnRead':
objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ResidueAsnRead':
objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ResidueGraphPntrFree':
objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'ResidueGraphPntrAsnRead':
objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucGraphPntrAsnRead':
objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead':
objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'AtomAsnRead':
objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'IntraResidueBondAsnRead':
objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ChiralCenterAsnRead':
objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'AtomPntrAsnRead':
objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'AtomPntrSetAsnRead':
objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
objmmdb2.c: In function 'BiostrucModelAsnRead':
objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelDescrFree':
objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'ModelSpaceAsnRead':
objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'Coordinates_coordinatesFree':
objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'Coordinates_coordinatesAsnRead':
objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'ReferenceFrameAsnRead':
objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'CoordinatesFree':
objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'AtomicCoordinatesAsnRead':
objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'Surface_surfaceFree':
objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'Surface_surfaceAsnRead':
objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'DensityCoordinatesAsnRead':
objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelSpacePointsAsnRead':
objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AtomicTemperatureFactorsFree':
objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'AtomicOccupanciesAsnRead':
objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AlternateConformationIdsAsnRead':
objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ConformationEnsembleAsnRead':
objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead':
objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead':
objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'TMeshAsnRead':
objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'TrianglesAsnRead':
objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c:1761:10: note: 'choice' was declared here
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c:828:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
objmmdb3.c: In function 'BiostrucFeatureSetAsnRead':
objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ChemGraphPntrsFree':
objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'AtomPntrsAsnRead':
objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ChemGraphAlignmentAsnRead':
objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ChemGraphInteractionAsnRead':
objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'SphereAsnRead':
objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ConeAsnRead':
objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'CylinderAsnRead':
objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BrickAsnRead':
objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'TransformAsnRead':
objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucFeatureSetDescrFree':
objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'Location_locationFree':
objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'Property_propertyFree':
objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ColorPropAsnRead':
objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'CameraAsnRead':
objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucScriptAsnRead':
objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionSimilarityAsnRead':
objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'OtherFeatureAsnRead':
objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead':
objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'MoleculePntrsAsnRead':
objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead':
objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ResidueIntervalPntrAsnRead':
objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionCoordinatesAsnRead':
objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionBoundaryFree':
objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'AlignStatsAsnRead':
objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RealValueAsnRead':
objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ModelSpacePointAsnRead':
objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'MoveFree':
objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RotMatrixAsnRead':
objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'TransMatrixAsnRead':
objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'GLMatrixAsnRead':
objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucScriptStepAsnRead':
objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
objmmdb3.c: In function 'MoveAsnRead':
objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'RegionBoundaryAsnRead':
objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead':
objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'ChemGraphPntrsAsnRead':
objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c:3401:10: note: 'choice' was declared here
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c:2303:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objcn3d.c
objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead':
objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead':
objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dColorAsnRead':
objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dBackboneStyleAsnRead':
objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dGeneralStyleAsnRead':
objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead':
objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dStyleSettingsAsnRead':
objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead':
objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dStyleTableItemAsnRead':
objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dResidueRangeAsnRead':
objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead':
objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dObjectLocationAsnRead':
objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dUserAnnotationAsnRead':
objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dGLMatrixAsnRead':
objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dVectorAsnRead':
objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dViewSettingsAsnRead':
objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
mmdbapi.c: In function 'MakeAModelstruc':
mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable]
mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable]
mmdbapi.c: In function 'AddPFBSelect':
mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
mmdbapi1.c: In function 'FreeAtomicModelAsnLists':
mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable]
mmdbapi1.c: In function 'FetchBS':
mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable]
mmdbapi1.c: In function 'FreeSurfaceModelAsnList':
mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'MakeChemGraphNodeList':
mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'DoApplyTransform':
mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'DoReverseTransform':
mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable]
mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable]
mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable]
mmdbapi1.c: In function 'fnPBSFtoPSA':
mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable]
mmdbapi1.c: In function 'InstallAlignedSlave':
mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable]
mmdbapi1.c: In function 'BiostrucAddFeature':
mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable]
mmdbapi1.c: In function 'BiostrucAsnGet':
mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized]
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized]
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
mmdbapi2.c: In function 'GetAtomLocs':
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
mmdbapi2.c: In function 'AssignAtomLocId':
mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'AssignBackBone':
mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'AssignVirtual':
mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'AssignIons':
mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'MolFromPDBChain':
mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'SeqStringFromMol':
mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
mmdbapi3.c: In function 'WritePDBHeader':
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
mmdbapi3.c: In function 'WritePDBRemarks':
mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable]
mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable]
mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable]
mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable]
mmdbapi3.c: In function 'WritePDBConnect':
mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi3.c: In function 'WritePDBModelList':
mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable]
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable]
mmdbapi3.c: In function 'WriteFASTAMolecule':
mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
mmdbapi4.c: In function 'RefreshSurface':
mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable]
mmdbapi4.c: In function 'FreeCoordinatesAsnLists':
mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable]
mmdbapi4.c: In function 'FreeRedundantAsn':
mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable]
mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
mmdbapi4.c: In function 'RefreshModelAsnMem':
mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable]
mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable]
mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable]
mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable]
mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable]
mmdbapi4.c: In function 'RebuildChemGraphAsn':
mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable]
mmdbapi4.c: In function 'WriteASNChemGraphOnly':
mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable]
mmdbapi4.c: In function 'FreeSingleModel':
mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable]
mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable]
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable]
mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable]
mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable]
mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable]
mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable]
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wuninitialized]
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function 'LoadSubsetTable':
vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prunebsc.c
prunebsc.c: In function 'PruneFeatureSet':
prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable]
prunebsc.c: In function 'PruneModel':
prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable]
prunebsc.c: In function 'PruneBiostruc':
prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:173:8: note: 'mtype' was declared here
prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:171:47: note: 'currenthet' was declared here
prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:102:8: note: 'mtype' was declared here
prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:100:38: note: 'currentbp' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objcdd.c
objcdd.c: In function 'CddIdFree':
objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddIdAsnRead':
objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddIdSetAsnRead':
objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddIdSetAsnWrite':
objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddAsnRead':
objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddSetAsnRead':
objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddSetAsnWrite':
objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddTreeAsnRead':
objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddTreeSetAsnRead':
objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddTreeSetAsnWrite':
objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodesAsnRead':
objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodesAsnWrite':
objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddProjectAsnRead':
objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddOrgRefAsnRead':
objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddOrgRefSetAsnRead':
objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddOrgRefSetAsnWrite':
objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodeDescrFree':
objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddPrefNodeDescrAsnRead':
objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodeDescrSetAsnRead':
objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite':
objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'GlobalIdAsnRead':
objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddRepeatAsnRead':
objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddBookRefAsnRead':
objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddDescrSetAsnRead':
objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddDescrSetAsnWrite':
objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'MatrixAsnRead':
objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'TriangleAsnRead':
objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'UpdateCommentFree':
objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'UpdateCommentAsnRead':
objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'UpdateAlignAsnRead':
objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'RejectIdAsnRead':
objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'RejectIdAsnWrite':
objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'FeatureEvidenceFree':
objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'FeatureEvidenceAsnRead':
objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'AlignAnnotAsnRead':
objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'AlignAnnotSetAsnRead':
objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'AlignAnnotSetAsnWrite':
objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'DomainParentAsnRead':
objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'SequenceTreeAsnRead':
objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'AlgorithmTypeAsnRead':
objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'SeqTreeNodeAsnRead':
objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'Children_footprintAsnRead':
objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'NodeAnnotationAsnRead':
objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddViewerRectAsnRead':
objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddViewerAsnRead':
objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddScriptAsnRead':
objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objcdd.c: In function 'CddDescrAsnRead':
objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cddutil.c
cddutil.c: In function 'CddGetPmIds':
cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable]
cddutil.c: In function 'CddGetAnnotNames':
cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddCheckForRepeats':
cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress]
cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg':
cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable]
cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'SeqAlignInform':
cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddAlignInform':
cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddPssmInform':
cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddPosFreqInform':
cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddDenDiagCposComputation':
cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddCposComputation':
cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddRetrieveBioseqById':
cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable]
cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable]
cddutil.c: In function 'CddConsensus':
cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddCposCompPart1':
cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddGetNewIndexForThreading':
cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable]
cddutil.c: In function 'CddCposComp':
cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddDumpTaxLinks':
cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable]
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable]
../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function]
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
cddutil.c: In function 'CddBioseqCopy':
cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wuninitialized]
cddutil.c: In function 'CddCopyMSLDenDiag':
cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wuninitialized]
cddutil.c: In function 'CddCalculateTriangle':
cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wuninitialized]
cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wuninitialized]
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cddposutil.c
cddposutil.c: In function 'CddfindThreshSequences':
cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
cddposutil.c: In function 'CddfindDenseDiagThreshSequences':
cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
cddposutil.c: In function 'CddposFreqsToMatrix':
cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
cddposutil.c: In function 'CddposDenseDiagDemographics':
cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable]
cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable]
cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable]
cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable]
cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable]
cddposutil.c: In function 'CddSetUpSearchInternalByLoc':
cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable]
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable]
cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable]
cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable]
cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable]
cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable]
cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable]
cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable]
cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable]
cddposutil.c: In function 'CddposReadAlignment':
cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable]
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function]
cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function]
cddposutil.c: In function 'CddposComputeSequenceWeights':
cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c:832:68: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c: In function 'CddposDemographics':
cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c:1246:63: note: 'min_query_length' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmime.c
objmime.c: In function 'NcbiMimeAsn1Free':
objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'Data_dataFree':
objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'Data_dataAsnRead':
objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'BiostrucAlignAsnRead':
objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucAlignSeqAsnRead':
objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucSeqAsnRead':
objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucSeqsAsnRead':
objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'SeqAlignData_seq_align_dataFree':
objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead':
objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'BundleSeqsAlignsAsnRead':
objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmime.c:516:10: note: 'choice' was declared here
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmime.c:1719:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF strucapi.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function 'atd':
thrdatd.c:201:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable]
thrdatd.c:198:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable]
thrdatd.c:188:14: warning: unused variable 'm' [-Wunused-variable]
thrdatd.c:188:12: warning: unused variable 'l' [-Wunused-variable]
thrdatd.c:171:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable]
thrdatd.c:170:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function 'bwfi':
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wuninitialized]
thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function 'cpal':
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function 'cpll':
thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function 'cprl':
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function 'cxei':
thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable]
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function 'g':
thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function 'salu':
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function 'sgoi':
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslor.c
thrdslor.c: In function 'slor':
thrdslor.c:68:5: warning: 'mp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function 'slou':
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspci.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function 'spea':
thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function 'spel':
thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function 'spni':
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function 'ttb0':
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
thrdttbi.c: In function 'ttbi':
thrdttbi.c:124:3: warning: 'sm' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function 'zsc':
thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable]
thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable]
thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable]
thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable]
thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable]
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wuninitialized]
thrdzsc.c:64:7: warning: 'tls' may be used uninitialized in this function [-Wuninitialized]
thrdzsc.c:64:7: warning: 'tlf' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o  thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF csim.c
csim.c: In function 'set_pam_200':
csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces]
csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces]
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'set_pam_file':
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'big_pass':
csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'diff1':
csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:893:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c: In function 'locate':
csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1144:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c: In function 'small_pass':
csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'display':
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
csim.c: In function 'SIM':
csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wuninitialized]
csim.c:928:23: note: 'dj' was declared here
csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wuninitialized]
csim.c:928:19: note: 'di' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF db_slist.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dust.c
dust.c: In function 'slpDust.isra.0':
dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dust.c
blast_dust.c: In function 's_SlpDust':
blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF falign.c
falign.c: In function 'fbld_table':
falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'bbld_table':
falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'rcbld_table':
falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'ex_table':
falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'free_all':
falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'scan':
falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'fscan':
falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'bscan':
falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'rfscan':
falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'trcscan':
falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'rclocal':
falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'enterS':
falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'local':
falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'align':
falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'calign':
falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'malign':
falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF g_any.c
g_any.c: In function 'k_align':
g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c: In function 'z_ALIGN':
g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable]
g_any.c: In function 'CHECK_SCORE':
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c: At top level:
g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable]
g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable]
g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function 'SIM2':
sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable]
sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sim3.c
sim3.c: In function 'locate':
sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c: At top level:
sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function]
sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function]
sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function]
sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function]
sim3.c: In function 'locate':
sim3.c:230:17: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized]
sim3.c:229:6: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sim4.c
sim4.c: In function 'sim4x':
sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
sim4.c: In function 'greedy':
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c: In function 'DISPLAY':
sim4.c:2625:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sim4.c: At top level:
sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function]
sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function]
sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function]
sim4.c: In function 'locate':
sim4.c:2919:19: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized]
sim4.c:2918:7: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized]
sim4.c: In function 'sim4x':
sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wuninitialized]
sim4.c:1609:18: note: 'forth' was declared here
sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wuninitialized]
sim4.c:1609:12: note: 'back' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF simutil.c
simutil.c: In function 'make_align':
simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
simutil.c: At top level:
simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function]
simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function]
simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF slist.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sec.c
sec.c: In function 'Region':
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:504:11: warning: 'old_l' may be used uninitialized in this function [-Wuninitialized]
sec.c:494:13: warning: 'ppj' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'ppi' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'pi' may be used uninitialized in this function [-Wuninitialized]
sec.c:513:13: warning: 'ej' may be used uninitialized in this function [-Wuninitialized]
sec.c:400:8: warning: 'ei' may be used uninitialized in this function [-Wuninitialized]
sec.c:511:13: warning: 'bj' may be used uninitialized in this function [-Wuninitialized]
sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'RB' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'LB' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function 'find_orf':
tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable]
tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable]
tfuns.c: At top level:
tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF toasn3.c
toasn3.c: In function 'FindOrg':
toasn3.c:1311:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'CheckQualsWithComm':
toasn3.c:1592:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'CheckQuals':
toasn3.c:1629:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'CountSourceFeat':
toasn3.c:2415:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
toasn3.c:2406:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'TASNTrimInternalSemicolons':
toasn3.c:3986:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'ImpFeatToProtRef':
toasn3.c:4672:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'RemovePeptideImpFeats':
toasn3.c:4967:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
toasn3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
toasn3.c:1572:16: warning: 'GetQualValue' defined but not used [-Wunused-function]
toasn3.c: In function 'GetOriginalBeforeAdjustment':
toasn3.c:4185:29: warning: 'last' may be used uninitialized in this function [-Wuninitialized]
toasn3.c: In function 'FixNucProtSet':
toasn3.c:2058:21: warning: 'bseg' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function 'ChkSegset':
toporg.c:62:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
toporg.c:61:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
toporg.c:58:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
toporg.c:53:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'ChkNucProt':
toporg.c:594:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'StripBSfromParts':
toporg.c:1280:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
toporg.c:1279:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable]
toporg.c:1278:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'MapsToGenref':
toporg.c:1944:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable]
toporg.c:1939:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'FindOldLineage':
toporg.c:2521:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'StripBadTitleFromProteinProducts':
toporg.c:4968:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
toporg.c: At top level:
toporg.c:3010:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function]
toporg.c: In function 'MergeEquivCitSubs':
toporg.c:3831:16: warning: 'csp1' may be used uninitialized in this function [-Wuninitialized]
toporg.c: In function 'CheckMaps':
toporg.c:1715:11: warning: 'to' may be used uninitialized in this function [-Wuninitialized]
toporg.c:1696:24: note: 'to' was declared here
toporg.c:1714:13: warning: 'from' may be used uninitialized in this function [-Wuninitialized]
toporg.c:1696:18: note: 'from' was declared here
toporg.c: In function 'ConvertSegSetToDeltaSeq':
toporg.c:6566:29: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pobutil.c
pobutil.c: In function 'build_repeat_feat':
pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable]
pobutil.c: In function 'merge_StdSeg':
pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable]
pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable]
pobutil.c: In function 'AluFeat':
pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF stsutil.c
stsutil.c: In function 'InitSTSSearch_r':
stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable]
stsutil.c: In function 'GetSTSEntry':
stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable]
stsutil.c: In function 'STSCalculateHash':
stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts]
stsutil.c: In function 'STSReverse':
stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts]
stsutil.c: In function 'InitHashTable':
stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable]
stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable]
stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable]
stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable]
stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable]
stsutil.c: At top level:
stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF suggadj.c
suggadj.c: In function 'score_possible_splice_sites':
suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c: In function 'check_split_codon':
suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c: In function 'overlapping_fixer':
suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF suggest.c
suggest.c: In function 'get_frames':
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
suggest.c: At top level:
suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function]
suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF suggslp.c
suggslp.c: In function 'MakeReverseSequence':
suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast.c
blast.c: In function 'BlastReevaluateWithAmbiguities':
blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable]
blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastGetVirtualOIDList':
blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
blast.c: In function 'BlastGetDbChunk':
blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
blast.c: In function 'BlastCreateQueryDNAP':
blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastWordFinder_contig':
blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastWordExtend':
blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastNewWordExtend':
blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastNtWordFinder_mh':
blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastNtWordFinder':
blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastSaveCurrentHitlist':
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
blast.c: In function 'SumHSPEvalue':
blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable]
blast.c: In function 'link_hsps':
blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable]
blast.c: In function 'blastMergeFilterLocs':
blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wuninitialized]
blast.c: In function 'BlastLinkHsps':
blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastutl.c
blastutl.c: In function 'BlastSeqLocFilterEx':
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
blastutl.c: In function 'BlastPreliminaryGappedScore':
blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
blastutl.c: In function 'BlastGetGappedScore':
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
blastutl.c: In function 'BlastNtFindWords':
blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'BlastNewFindWordsEx':
blastutl.c:12124:30: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'BlastNewFindWords_Old':
blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'BlastFindWords':
blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11711:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback':
blastutl.c:9008:42: warning: 'seqalign_array' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastool.c
blastool.c: In function 'OOFBlastHSPGetNumIdentical':
blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable]
blastool.c: In function 'BlastCreateVirtualOIDList':
blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BlastInsertList2Heap':
blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BlastFreeHeap':
blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BLASTFilterOverlapRegions':
blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BlastPrintAlignInfo':
blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'MegaBlastPrintAlignInfo':
blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wuninitialized]
blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastconcat.c
blastconcat.c: In function 'BlastMakeFakeBspConcat':
blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF splutil.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
gapxdrop.c: In function 'ALIGN_EX':
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg0.c
bandalg0.c: In function 'g_band0_align':
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg0.c:266:12: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg1.c
bandalg1.c: In function 'gband_quadratic':
bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
bandalg1.c: In function 'g_band1_align':
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg1.c: In function 'gband_quadratic':
bandalg1.c:200:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg1.c:164:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg2.c
bandalg2.c: In function 'gb_linear_align':
bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable]
bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable]
bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable]
bandalg2.c:326:9: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg3.c
bandalg3.c: In function 'gband_linear_qgap':
bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
bandalg3.c:292:21: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg3.c:185:28: note: 'Y' was declared here
bandalg3.c:291:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg3.c:185:25: note: 'X' was declared here
bandalg3.c:217:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg3.c:180:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg4.c
bandalg4.c: In function 'g_band4_align_small':
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable]
bandalg4.c: In function 'g_band4_align':
bandalg4.c:286:13: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:544:3: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:640:28: note: 'Y' was declared here
bandalg4.c:823:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:640:25: note: 'X' was declared here
bandalg4.c:694:10: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:634:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg5.c
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
bandalg5.c: In function 'g_band5_align':
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:320:20: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg5.c:146:28: note: 'Y' was declared here
bandalg5.c:319:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg5.c:146:25: note: 'X' was declared here
bandalg5.c:180:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg5.c:140:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalgn.c
bandalgn.c: In function 'ExtendSeqAlign':
bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
bandalgn.c: In function 'CC_ExtendSeqAlign':
bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
bandalgn.c: At top level:
bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable]
bandalgn.c: In function 'LocalBandToEditBlock':
bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c: In function 'SetLowUpFromBlast':
bandalgn.c:1053:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1053:14: warning: 'maxsc' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1060:7: warning: 'maxlen' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1048:10: warning: 'maxdi' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c: In function 'GetAlignExtremes':
bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastkar.c
blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable]
blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable]
blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable]
blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable]
blastkar.c: In function 'BLAST_ScoreBlkNew':
blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF actutils.c
actutils.c: In function 'SlideToHit':
actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable]
actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable]
actutils.c: In function 'ResolveSpinConflict':
actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable]
actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable]
actutils.c: In function 'ACT_FindBestAlnByDotPlot':
actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function]
actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function]
actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function]
actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function]
actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function]
actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function]
actutils.c: In function 'GetOldBlastAlignmentPiece':
actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF posit.c
posit.c: In function 'posDemographics':
posit.c:1110:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
posit.c: In function 'posFreqsToMatrix':
posit.c:1679:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
posit.c: In function 'posComputePseudoFreqs':
posit.c:1840:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
posit.c: In function 'WposComputation':
posit.c:1988:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
posit.c: In function 'posPrintInformation':
posit.c:2319:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable]
posit.c: In function 'posFindAlignmentDimensions':
posit.c:3087:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wuninitialized]
posit.c: In function 'posComputeSequenceWeights':
posit.c:1447:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized]
posit.c:1424:18: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized]
posit.c: In function 'posReadCheckpoint':
posit.c:2873:28: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
posit.c:2702:11: note: 'j' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lookup.c
lookup.c: In function 'lookup_get_memory':
lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
lookup.c: In function 'MegaBlastBuildLookupTable':
lookup.c:1047:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:1051:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:1078:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:1082:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable]
lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF readdb.c
readdb.c: In function 'readdb_parse_db_names':
readdb.c:2498:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
readdb.c: In function 'FindBlastDBFileEx':
readdb.c:3475:33: warning: unused variable 'envp' [-Wunused-variable]
readdb.c: In function 'readdb_new_internalEx':
readdb.c:3553:25: warning: unused variable 'envp' [-Wunused-variable]
readdb.c: In function 'readdb_get_link':
readdb.c:4747:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable]
readdb.c:4746:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'readdb_check_oid':
readdb.c:4891:18: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses]
readdb.c: In function 'readdb_seqid2fasta':
readdb.c:5231:22: warning: unused variable 'dummy_gi' [-Wunused-variable]
readdb.c:5175:13: warning: unused variable 'chptr' [-Wunused-variable]
readdb.c: In function 'FDBLoadMembershipsTable':
readdb.c:8260:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'SeqIdE2Index':
readdb.c:8572:13: warning: unused variable 'tmp' [-Wunused-variable]
readdb.c:8571:11: warning: unused variable 'tmptype' [-Wunused-variable]
readdb.c: In function 'SeqIdSetE2Index':
readdb.c:8876:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'Fastacmd_Search_ex':
readdb.c:12072:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'DumpOneSequence':
readdb.c:12409:14: warning: unused variable 'numeric_id' [-Wunused-variable]
readdb.c: At top level:
../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable]
../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
readdb.c:12821:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function]
readdb.c: In function 'readdb_get_taxonomy_names':
readdb.c:5674:28: warning: 'ufp_last' may be used uninitialized in this function [-Wuninitialized]
readdb.c: In function 'readdb_get_descriptor':
readdb.c:6663:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wuninitialized]
readdb.c: In function 'GetAccList':
readdb.c:11813:29: warning: 'AccListLast' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisam.c
ncbisam.c: In function 'ISAMMakeStringIndex':
ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable]
ncbisam.c: In function 'ISAMInitSearch':
ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable]
ncbisam.c: In function 'ISAMMakeIndex':
ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:983:14: warning: 'KeyInfo' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c: In function 'ISAMCreateDatabase':
ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c: In function 'NISAMSearch':
ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1750:19: warning: 'KeyPage' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1618:27: note: 'SampleNum' was declared here
ncbisam.c: In function 'SISAMSearch':
ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisort.c
ncbisort.c: In function 'SORTFracCompare':
ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int]
ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int]
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function]
ncbisort.c: In function 'SORTMergeFPS':
ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salign.c
salign.c: In function 'BandAlignTwoSeqLocsFunc':
salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable]
salign.c: In function 'SortBlastHits':
salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable]
salign.c: In function 'link_solution':
salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable]
salign.c: In function 'SortBlastHits':
salign.c:411:6: warning: 'salpdup' may be used uninitialized in this function [-Wuninitialized]
salign.c:455:22: warning: 'salptmp' may be used uninitialized in this function [-Wuninitialized]
salign.c:445:28: warning: 'preselect' may be used uninitialized in this function [-Wuninitialized]
salign.c: In function 'TranslateSeqLoc.constprop.5':
salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wuninitialized]
salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.3':
salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wuninitialized]
salign.c:1408:15: note: 'tail' was declared here
salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
salign.c:1301:30: note: 'stop' was declared here
salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized]
salign.c:1301:22: note: 'start1' was declared here
salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
salign.c:1229:30: note: 'stop' was declared here
salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized]
salign.c:1229:22: note: 'start1' was declared here
salign.c: In function 'SeqLocListToSeqAlign':
salign.c:1672:23: warning: 'master_slp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salptool.c
salptool.c: In function 'MergeTwoDspBySIM4':
salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable]
salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
salptool.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function]
salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function]
salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function]
salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function]
salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkutil.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkpcc.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkptpf.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkepi.c
urkepi.c: In function 'PredictEpiI0':
urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'OptimizeEpiComp':
urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'OptimizeEpiHP':
urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'OptimizeEpiProbFunc':
urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'FilterEpi':
urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wuninitialized]
urkepi.c:936:56: note: 'right' was declared here
urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wuninitialized]
urkepi.c:936:50: note: 'left' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkfltr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkdust.c
urkdust.c: In function 'DustMe_h':
urkdust.c:196:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
urkdust.c: In function 'DustForGraph':
urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urksigu.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c: In function 'getprob':
seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkbias.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function]
urkcnsrt.c: In function 'Scan3Frames':
urkcnsrt.c:1385:5: warning: 'length' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urktree.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pseed3.c
pseed3.c: In function 'SeedPruneHitsFromSeedReturn':
pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable]
pseed3.c: In function 'seedEngineCore':
pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pseed3.c: In function 'output_hits':
pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable]
pseed3.c: In function 'init_order':
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pattern1.c
pattern1.c: In function 'init_pattern':
pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pattern1.c: In function 'find_hitsS_DNA':
pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type]
pattern1.c: In function 'and':
pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pattern1.c: In function 'align':
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
pattern1.c: In function 'get_patL':
pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'align':
pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wuninitialized]
pattern1.c:1097:15: warning: 'tempCC' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'get_patLL':
pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'init_pattern':
pattern1.c:178:14: warning: 'tj' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'align_of_pattern':
pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF impatool.c
impatool.c: In function 'IMPALAPrintHelp':
impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF posit2.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mbalign.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vecscrn.c
vecscrn.c: In function 'VSPrintOverviewFromSeqLocs':
vecscrn.c:1078:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
vecscrn.c: In function 'VSPrintListFromSeqLocs':
vecscrn.c:1188:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mblast.c
mblast.c: In function 'BioseqMegaBlastEngineCore':
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc':
mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastWordFinder_disc_1b':
mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
mblast.c: In function 'MegaBlastGappedAlign':
mblast.c:2920:35: warning: 'gap_align' may be used uninitialized in this function [-Wuninitialized]
mblast.c: In function 'MegaBlastWordFinder_disc':
mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized]
mblast.c:2117:51: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized]
mblast.c: In function 'MegaBlastWordFinder':
mblast.c:2711:51: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized]
mblast.c:2373:17: note: 'ecode2' was declared here
mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized]
mblast.c:2373:9: note: 'ecode1' was declared here
mblast.c: In function 'MegaBlastGapInfoToSeqAlign':
mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF rpsutil.c
rpsutil.c: In function 'RPSBlastSearchLight':
rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable]
rpsutil.c: In function 'RPSBgetCddHits':
rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable]
rpsutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
rpsutil.c: In function 'RPSAlignTraceBack':
rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized]
rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wuninitialized]
rpsutil.c: In function 'RPSCalcEValue':
rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized]
rpsutil.c: In function 'RPSBgetCddHits':
rpsutil.c:2238:13: warning: 'dbname' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function 'Kappa_SequenceGetProteinRange':
kappa.c:1399:7: warning: unused variable 'i' [-Wunused-variable]
kappa.c: At top level:
kappa.c:2203:5: warning: initialization from incompatible pointer type [enabled by default]
kappa.c:2203:5: warning: (near initialization for 'redo_align_callbacks.get_range') [enabled by default]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF xmlblast.c
xmlblast.c: In function 'PSIXmlInit':
xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
xmlblast.c: In function 'BXMLGetSeqLineForStdSeg':
xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wuninitialized]
xmlblast.c: In function 'BXMLSeqAlignToHits':
xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized]
xmlblast.c: In function 'SeqAlignToHits':
xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
bxmlobj.c: In function 'BlastOutputAsnRead':
bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c: In function 'ParametersAsnRead':
bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable]
bxmlobj.c: In function 'IterationAsnRead':
bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c: In function 'StatisticsAsnRead':
bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable]
bxmlobj.c: In function 'HitAsnRead':
bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c: In function 'HspAsnRead':
bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dotseq.c
dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces]
dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces]
dotseq.c: In function 'DOT_BuildPLookup':
dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable]
dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable]
dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable]
dotseq.c: In function 'DOT_ComputeHits':
dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable]
dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable]
dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable]
dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot':
dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
dotseq.c: In function 'DOT_BuildHitList':
dotseq.c:1286:9: warning: 'index' may be used uninitialized in this function [-Wuninitialized]
dotseq.c:1310:19: note: 'index' was declared here
dotseq.c:1309:19: warning: 'hitlist' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF spidey.c
spidey.c: In function 'SPI_PrintResult':
spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_AlnSinglemRNAToPieces':
spidey.c:2850:4: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c: In function 'SPI_FillInLastmRNAHoles':
spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_FindBestAlnByDotPlot':
spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_ConnectAlnPieces':
spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable]
spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_AdjustSplicesInPieces':
spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_CheckMrnaOrder':
spidey.c:10293:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c:10297:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c:10310:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c:10312:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF motif.c
motif.c: In function 'MOT_FindPolyA':
motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
motif.c: In function 'MOT_FindKozak':
motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
motif.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
blfmtutl.c: In function 'BlastPrintTabularResults':
blfmtutl.c:1113:13: warning: 'alignments_count' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1331:19: warning: 's_end' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1330:21: warning: 's_start' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1329:19: warning: 'q_end' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1328:21: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1072:20: warning: 'query_id' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c: In function 'BlastSetUserErrorString':
blfmtutl.c:1431:13: warning: 'title' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF compo_heap.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontg.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontt.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pictogif.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontl.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfonts.c
gcc  -DWIN_GIF -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
ncbidrwg.c: In function 'Nlm_SetFontData':
ncbidrwg.c:489:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_GetFontData':
ncbidrwg.c:501:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_FindFont':
ncbidrwg.c:2234:7: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_ReuseFont':
ncbidrwg.c:2252:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_GetFontSpec':
ncbidrwg.c:2860:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c:2867:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_AssignPrinterFont':
ncbidrwg.c:2928:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_GIFRgnToRect':
ncbidrwg.c:4098:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_RectToGIFRgn':
ncbidrwg.c:4109:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_ClearRgn':
ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_DiffRgn':
ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_XorRgn':
ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_EqualRgn':
ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_EmptyRgn':
ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_CopyPixmap':
ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_GetColorRGB':
ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF algorend.c
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
algorend.c: In function 'RenderObject':
algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable]
algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable]
algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable]
algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable]
algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable]
algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderLabel':
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
algorend.c: In function 'Do3DOrigin':
algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable]
algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable]
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
algorend.c: In function 'RenderLabel':
algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'MasterChangeRenderProc.isra.6':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'RenderObject':
algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'Do3DOrigin':
algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
cn3dopen.c:513:15: note: 'salp' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_GetSubSet':
cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
cn3dwin.c: In function 'Viewer3DViewer':
cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable]
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqcons.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized]
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
algorend.c: In function 'Cn3D_SetOGLFont':
algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable]
algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable]
algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable]
algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable]
algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable]
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
algorend.c: In function 'MasterChangeLabelsProc':
algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable]
algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable]
algorend.c: In function 'ResetLabelCtrls':
algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'LabelControls':
algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable]
algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable]
algorend.c: In function 'Cn3D_SetQualityFromAppParams':
algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable]
algorend.c: In function 'OGL_Quality':
algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable]
algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable]
algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderControls':
algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderObject':
algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable]
algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable]
algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable]
algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable]
algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable]
algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable]
algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable]
algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable]
algorend.c: In function 'RenderLabel':
algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable]
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable]
algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable]
algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable]
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
algorend.c: In function 'RenderLabel':
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'MasterChangeRenderProc':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
cn3dopen.c:513:15: note: 'salp' was declared here
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
cn3dsave.c: In function 'Cn3D_AddMatrix':
cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_GetSubSet':
cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized]
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Cn3D_Default_HLColor':
cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable]
cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable]
cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable]
cn3dwin.c: In function 'Cn3D_RedrawEx':
cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable]
cn3dwin.c: In function 'fnPreCHLresidue':
cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
cn3dwin.c: In function 'Cn3DWin':
cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration]
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable]
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable]
cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function]
cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function]
cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function]
cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function]
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
cn3dshim.c: In function 'Cn3D_Size':
cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable]
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable]
cn3dstyl.c: In function 'ModelSetLabelCtrls':
cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable]
cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable]
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized]
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized]
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized]
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_engine.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_extend.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_filter.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hits.c
blast_hits.c: In function 'Blast_HSPResultsFromHSPStreamWithLimitEx':
blast_hits.c:3499:13: warning: variable 'rm_hsps' set but not used [-Wunused-but-set-variable]
blast_hits.c: At top level:
blast_hits.c:3212:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_itree.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seg.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_sw.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_setup.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_stat.c
blast_stat.c: In function 's_BlastGumbelBlkNew':
blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable]
blast_stat.c: At top level:
blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function]
blast_stat.c: In function 'BLAST_SpougeEtoS':
blast_stat.c:5205:12: warning: 'a' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function 'Blast_TracebackFromHSPList':
blast_traceback.c:393:38: warning: 'qe' may be used uninitialized in this function [-Wuninitialized]
blast_traceback.c:365:22: note: 'qe' was declared here
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_util.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gapinfo.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF greedy_align.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF link_hsps.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pattern.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF phi_extend.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_util.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_posit.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_program.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tune.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF split_query.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_api.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_input.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_format.c
blast_format.c: In function 's_MBXmlInit':
blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
blast_format.c: In function 's_LoadMatrix':
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function 'Blast_PrelimSearchThreadRun':
blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_returns.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seq.c
blast_seq.c: In function 's_SeqLocFillSequenceBuffer':
blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped':
blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
seqsrc_readdb.c: In function 's_ReaddbGetNextChunk':
seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function 's_TwoSeqBasicFillOptions':
twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable]
twoseq_api.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dust_filter.c
dust_filter.c: In function 's_GetFilteringLocations':
dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
gcc  -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
hspfilter_queue.c: In function 's_BlastHSPQueueInit':
hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable]
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
gcc  -o asntool -g -O2 -Wall   -I../include -DWIN_MOTIF  -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
asncode.c: In function 'AsnCode_SETOF_base_or_user':
asncode.c:1518:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable]
asncode.c:1517:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
asncode.c: In function 'userobj_and_basetype_SETOF':
asncode.c:2472:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
asncode.c: In function 'AsnCodeIsReallyChoice':
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart':
asncode.c:3623:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable]
asncode.c: In function 'AsnCodeIter':
asncode.c:4237:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asncode.c: In function 'AsnCode':
asncode.c:4316:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable]
asncode.c: At top level:
asncode.c:286:17: warning: 'defptr' defined but not used [-Wunused-variable]
asncode.c:288:17: warning: 'defbigint' defined but not used [-Wunused-variable]
asncode.c:289:17: warning: 'defreal' defined but not used [-Wunused-variable]
asncode.c:290:17: warning: 'defbool' defined but not used [-Wunused-variable]
asncode.c:291:17: warning: 'defbyte' defined but not used [-Wunused-variable]
cp -p asntool ../bin
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall  " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
	    CFLAGS1="-c -g -O2 -Wall -fPIC" \
	    LDFLAGS="" \
	    NETENTREZVERSION="2.02c2ASN1SPEC6" \
	    BLIB31=libvibnet.a OGLLIBS="-lGLU -lGL -lpng " all libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \""  ni_lib_.c
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
ni_service.c: In function 's_GenericGetService':
ni_service.c:199:19: warning: unused variable 'c' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
netentr.c: In function 's_NetEntTLEvalCount':
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
netentr.c: In function 's_NetDocSumListGet':
netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable]
netentr.c: In function 's_NetTermListByTerm':
netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable]
netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable]
netentr.c: In function 's_NetTermListByPage':
netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable]
netentr.c: In function 'NetEntTLEval':
netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized]
netentr.c: In function 'NetEntTLEvalCount':
netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wuninitialized]
netentr.c:782:16: note: 'atp' was declared here
netentr.c: In function 'NetTermListByTerm':
netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wuninitialized]
netentr.c:1210:9: note: 'next_page' was declared here
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
netlib.c: In function 'BoolExprAsnWrite':
netlib.c:307:16: warning: unused variable 'n' [-Wunused-variable]
netlib.c: At top level:
netlib.c:96:16: warning: 'loaded' defined but not used [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
objneten.c: In function 'EntrezNeighborTextAsnRead':
objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'ChildLinkAsnRead':
objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'EntrezHierarchyAsnRead':
objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'EntrezBlastreqAsnRead':
objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'EntrezExtraInfoAsnRead':
objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'ClusterArticlesAsnRead':
objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'ClusterRespAsnRead':
objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'DateConstraintsAsnRead':
objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'DateVectorAsnRead':
objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'GetByFidAsnRead':
objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'GetFeatIdsAsnRead':
objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable]
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Naccentr.c: In function 'EntrezDocSumListGet':
Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Caccentr.c: In function 'EntrezDocSumListGet':
Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
trmlst.c: In function 'FetchFromTermList':
trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
docsum.c: In function 'ImportDocSumForm':
docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable]
docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable]
docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable]
docsum.c: In function 'SaveDocsumProject':
docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
docsum.c: At top level:
docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable]
docsum.c: In function 'FetchLocalBioseq':
docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wuninitialized]
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
objmla.c: In function 'MlaRequestFree':
objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
objmla.c: In function 'TitleMsgAsnRead':
objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
objmla.c: In function 'TitleMsgListAsnRead':
objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmla.c: In function 'MlaBackAsnRead':
objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function]
medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function]
medarch.c: In function 'MedArchPubSetCreate':
medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wuninitialized]
medarch.c:1697:5: warning: 'pubSetAtp' may be used uninitialized in this function [-Wuninitialized]
medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
objblst3.c: In function 'BlastSearchAsnRead':
objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastRequestFree':
objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'Cutoff2_cutoff2Free':
objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'Cutoff2_cutoff2AsnRead':
objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'Cutoff_cutoffAsnRead':
objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'Cutoff_cutoffFree':
objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastMatrixAsnRead':
objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastDbinfoAsnRead':
objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastMaskAsnRead':
objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastKABlkAsnRead':
objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastErrorAsnRead':
objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastPhialignAsnRead':
objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastDbinfoGetAsnRead':
objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastSeqIdAsnRead':
objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastSequenceAsnRead':
objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastPartsAsnRead':
objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastQueuedAsnRead':
objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastProgressAsnRead':
objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastDeflineAsnRead':
objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastVersionAsnRead':
objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'MegaBlastHitAsnRead':
objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'MegaBlastResultsAsnRead':
objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c: In function 'BlastResponseAsnRead':
objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c:1421:10: note: 'choice' was declared here
objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c:1787:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
netblap3.c: In function 'BlastNetBioseqFetchFunc':
netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
netblap3.c: In function 'MegaBlastSeqLocNetCore':
netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
netblap3.c: At top level:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function]
netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function]
netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function]
netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function]
netblap3.c: In function 'BlastNetMatrixToBlastMatrix':
netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wuninitialized]
netblap3.c: In function 'SubmitRequest':
netblap3.c:1763:18: warning: 'bllist' may be used uninitialized in this function [-Wuninitialized]
netblap3.c:1698:19: note: 'bllist' was declared here
netblap3.c: In function 'TraditionalBlastReportEngine':
netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized]
netblap3.c:2576:21: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
objtax1.c: In function 'Taxon1ReqFree':
objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1InfoAsnRead':
objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1ErrorAsnRead':
objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1NameAsnRead':
objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1DataAsnRead':
objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon2DataAsnRead':
objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax1.c: In function 'Taxon1RespAsnRead':
objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
taxutil.c: In function 'taxname_match':
taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable]
taxutil.c: In function 'get_lineage':
taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wuninitialized]
taxutil.c: In function 'get_gcode':
taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function 'getIdByOrgRef':
tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable]
tc2proc.c: In function 'bldLineage':
tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable]
tc2proc.c: In function 'storedTaxId':
tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable]
tc2proc.c: In function 'tax1e_needUpdate':
tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable]
tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable]
tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable]
tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable]
tc2proc.c: At top level:
tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function]
tc2proc.c: In function 'mergeOrgMod':
tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
parttree.c: In function 'tax_ptree_addSubtree':
parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
taxblast.c: In function 'TXBHtmlReportInternal':
taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable]
taxblast.c: At top level:
taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function]
taxblast.c: In function 'RDTaxLookupReset':
taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type]
taxblast.c: In function 'TXBGetTargetGi':
taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
id1gen.c: In function 'ID1serverRequestFree':
id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1serverMaxcomplexAsnRead':
id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1SeqHistAsnRead':
id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1SeqEntryInfoAsnRead':
id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1blobInfoAsnRead':
id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1serverDebugAsnRead':
id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c: In function 'ID1serverBackAsnRead':
id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
id1arch.c: In function 'ID1ArchSeqEntryGet':
id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable]
id1arch.c: In function 'ID1ArchGIGet':
id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable]
id1arch.c: In function 'SeqHistPrintTable':
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat]
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat]
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat]
id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat]
gcc  -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
accid1.c: In function 's_ID1BioseqFetchFunc':
accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable]
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o 
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
mkdir ../shlib
rm -f ../shlib/*.a
ln ../lib/*.a ../shlib
cd ../shlib; make -f ../make/makeshlb.unx `ls *.a | sed "s/\.a/.so.6/"` SH1="gcc  -o" SH2="-shared *.o"
make[3]: Entering directory `/«PKGBUILDDIR»/shlib'
gcc  -shared -Wl,-soname=libblastcompadj.so.6 -o libblastcompadj.so.6.1.20120620 \
	    -Wl,--whole-archive libblastcompadj.a -Wl,--no-whole-archive  \
	     -lm
gcc  -shared -Wl,-soname=libncbi.so.6 -o libncbi.so.6.1.20120620 \
	    -Wl,--whole-archive libncbi.a -Wl,--no-whole-archive  \
	     -lm
gcc  -shared -Wl,-soname=libblast.so.6 -o libblast.so.6.1.20120620 \
	    -Wl,--whole-archive libblast.a -Wl,--no-whole-archive  \
	    libblastcompadj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libblast.so.6.1.20120620 libblast.so.6
ln -s libblast.so.6.1.20120620 libblast.so
gcc  -shared -Wl,-soname=libncbiobj.so.6 -o libncbiobj.so.6.1.20120620 \
	    -Wl,--whole-archive libncbiobj.a -Wl,--no-whole-archive  \
	    libncbi.so.6.1.20120620 -lm
gcc  -shared -Wl,-soname=libncbitool.so.6 -o libncbitool.so.6.1.20120620 \
	    -Wl,--whole-archive libncbitool.a -Wl,--no-whole-archive  \
	    libblastcompadj.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
gcc  -shared -Wl,-soname=libblastapi.so.6 -o libblastapi.so.6.1.20120620 \
	    -Wl,--whole-archive libblastapi.a -Wl,--no-whole-archive  \
	    libblast.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libblastapi.so.6.1.20120620 libblastapi.so.6
ln -s libblastapi.so.6.1.20120620 libblastapi.so
ln -s libblastcompadj.so.6.1.20120620 libblastcompadj.so.6
ln -s libblastcompadj.so.6.1.20120620 libblastcompadj.so
gcc  -shared -Wl,-soname=libnetcli.so.6 -o libnetcli.so.6.1.20120620 \
	    -Wl,--whole-archive libnetcli.a -Wl,--no-whole-archive  \
	    libncbi.so.6.1.20120620 
gcc  -shared -Wl,-soname=libncbiid1.so.6 -o libncbiid1.so.6.1.20120620 \
	    -Wl,--whole-archive libncbiid1.a -Wl,--no-whole-archive  \
	    libncbiobj.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbi.so.6.1.20120620 
gcc  -shared -Wl,-soname=libncbimmdb.so.6 -o libncbimmdb.so.6.1.20120620 \
	    -Wl,--whole-archive libncbimmdb.a -Wl,--no-whole-archive  \
	    libncbiid1.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
gcc  -shared -Wl,-soname=libvibrantOGL.so.6 -o libvibrantOGL.so.6.1.20120620 \
	    -Wl,--whole-archive libvibrantOGL.a -Wl,--no-whole-archive  \
	    libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lGLU -lGL -lpng  -lXm -lXmu -lXt -lX11  -lm
gcc  -shared -Wl,-soname=libncbidesk.so.6 -o libncbidesk.so.6.1.20120620 \
	    -Wl,--whole-archive libncbidesk.a -Wl,--no-whole-archive  \
	    libblastapi.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libncbitool.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
gcc  -shared -Wl,-soname=libddvlib.so.6 -o libddvlib.so.6.1.20120620 \
	    -Wl,--whole-archive libddvlib.a -Wl,--no-whole-archive  \
	    libncbidesk.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 
ln -s libddvlib.so.6.1.20120620 libddvlib.so.6
ln -s libddvlib.so.6.1.20120620 libddvlib.so
ln -s libncbi.so.6.1.20120620 libncbi.so.6
ln -s libncbi.so.6.1.20120620 libncbi.so
ln -s libncbiNacc.so.6.1.20120620 libncbiCacc.so.6.1.20120620
ln -s libncbiCacc.so.6.1.20120620 libncbiCacc.so.6
ln -s libncbiCacc.so.6.1.20120620 libncbiCacc.so
gcc  -shared -Wl,-soname=libncbicdr.so.6 -o libncbicdr.so.6.1.20120620 \
	    -Wl,--whole-archive libncbicdr.a -Wl,--no-whole-archive  \
	    libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 
gcc  -shared -Wl,-soname=libncbiNacc.so.6 -o libncbiNacc.so.6.1.20120620 \
	    -Wl,--whole-archive libncbiNacc.a -Wl,--no-whole-archive  \
	    libncbicdr.so.6.1.20120620 libnetentr.a libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libncbiNacc.so.6.1.20120620 libncbiNacc.so.6
ln -s libncbiNacc.so.6.1.20120620 libncbiNacc.so
ln -s libncbiNacc.so.6.1.20120620 libncbiacc.so.6.1.20120620
ln -s libncbiacc.so.6.1.20120620 libncbiacc.so.6
ln -s libncbiacc.so.6.1.20120620 libncbiacc.so
ln -s libncbicdr.so.6.1.20120620 libncbicdr.so.6
ln -s libncbicdr.so.6.1.20120620 libncbicdr.so
ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3d.so.6.1.20120620
ln -s libncbicn3d.so.6.1.20120620 libncbicn3d.so.6
ln -s libncbicn3d.so.6.1.20120620 libncbicn3d.so
gcc  -shared -Wl,-soname=libncbicn3dOGL.so.6 -o libncbicn3dOGL.so.6.1.20120620 \
	    -Wl,--whole-archive libncbicn3dOGL.a -Wl,--no-whole-archive  \
	    libncbiNacc.so.6.1.20120620 libddvlib.so.6.1.20120620 libncbidesk.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 -lm
ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3dOGL.so.6
ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3dOGL.so
ln -s libncbidesk.so.6.1.20120620 libncbidesk.so.6
ln -s libncbidesk.so.6.1.20120620 libncbidesk.so
ln -s libncbiid1.so.6.1.20120620 libncbiid1.so.6
ln -s libncbiid1.so.6.1.20120620 libncbiid1.so
gcc  -shared -Wl,-soname=libncbimla.so.6 -o libncbimla.so.6.1.20120620 \
	    -Wl,--whole-archive libncbimla.a -Wl,--no-whole-archive  \
	    libncbiobj.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbi.so.6.1.20120620 
ln -s libncbimla.so.6.1.20120620 libncbimla.so.6
ln -s libncbimla.so.6.1.20120620 libncbimla.so
ln -s libncbimmdb.so.6.1.20120620 libncbimmdb.so.6
ln -s libncbimmdb.so.6.1.20120620 libncbimmdb.so
ln -s libncbiobj.so.6.1.20120620 libncbiobj.so.6
ln -s libncbiobj.so.6.1.20120620 libncbiobj.so
ln -s libncbitool.so.6.1.20120620 libncbitool.so.6
ln -s libncbitool.so.6.1.20120620 libncbitool.so
gcc  -shared -Wl,-soname=libncbitxc2.so.6 -o libncbitxc2.so.6.1.20120620 \
	    -Wl,--whole-archive libncbitxc2.a -Wl,--no-whole-archive  \
	    libncbitool.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libncbitxc2.so.6.1.20120620 libncbitxc2.so.6
ln -s libncbitxc2.so.6.1.20120620 libncbitxc2.so
gcc  -shared -Wl,-soname=libnetblast.so.6 -o libnetblast.so.6.1.20120620 \
	    -Wl,--whole-archive libnetblast.a -Wl,--no-whole-archive  \
	    libncbitool.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 
ln -s libnetblast.so.6.1.20120620 libnetblast.so.6
ln -s libnetblast.so.6.1.20120620 libnetblast.so
ln -s libnetcli.so.6.1.20120620 libnetcli.so.6
ln -s libnetcli.so.6.1.20120620 libnetcli.so
ln -s libncbiNacc.so.6.1.20120620 libnetentr.so.6.1.20120620
ln -s libnetentr.so.6.1.20120620 libnetentr.so.6
ln -s libnetentr.so.6.1.20120620 libnetentr.so
gcc  -shared -Wl,-soname=libvibgif.so.6 -o libvibgif.so.6.1.20120620 \
	    -Wl,--whole-archive libvibgif.a -Wl,--no-whole-archive  \
	    libncbi.so.6.1.20120620 -lm
ln -s libvibgif.so.6.1.20120620 libvibgif.so.6
ln -s libvibgif.so.6.1.20120620 libvibgif.so
gcc  -shared -Wl,-soname=libvibnet.so.6 -o libvibnet.so.6.1.20120620 \
	    -Wl,--whole-archive libvibnet.a -Wl,--no-whole-archive  \
	    libncbiNacc.so.6.1.20120620 libncbidesk.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbicdr.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 
ln -s libvibnet.so.6.1.20120620 libvibnet.so.6
ln -s libvibnet.so.6.1.20120620 libvibnet.so
ln -s libvibrantOGL.so.6.1.20120620 libvibrant.so.6.1.20120620
ln -s libvibrant.so.6.1.20120620 libvibrant.so.6
ln -s libvibrant.so.6.1.20120620 libvibrant.so
ln -s libvibrantOGL.so.6.1.20120620 libvibrantOGL.so.6
ln -s libvibrantOGL.so.6.1.20120620 libvibrantOGL.so
make[3]: Leaving directory `/«PKGBUILDDIR»/shlib'
rm -f ../shlib/*.a
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build clean
make[2]: Entering directory `/«PKGBUILDDIR»/build'
rm -f *.[acho] *.glo
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall  " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
	    CFLAGS1="-c -g -O2 -Wall  -D_PNG" \
	    LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
	    LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory `/«PKGBUILDDIR»/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
mkdir: cannot create directory '../include/connect': File exists
make[2]: [copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
mkdir: cannot create directory '../include/ctools': File exists
make[2]: [copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
		../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbithr.c
ncbithr.c: In function 's_TlsDestroyAll':
ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable]
cp -p ncbithr.o ../lib
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbimain.c
ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbibs.c
ncbibs.c: In function 'Nlm_BSMerge':
ncbibs.c:106:3: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSAdd':
ncbibs.c:210:4: warning: statement with no effect [-Wunused-value]
ncbibs.c:222:4: warning: statement with no effect [-Wunused-value]
ncbibs.c:223:4: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSDelete':
ncbibs.c:336:4: warning: statement with no effect [-Wunused-value]
ncbibs.c:341:4: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSWrite':
ncbibs.c:594:3: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSRead':
ncbibs.c:658:3: warning: statement with no effect [-Wunused-value]
ncbibs.c: In function 'Nlm_BSGetByte':
ncbibs.c:702:2: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF wwwutils.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbierr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbienv.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbifile.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbimath.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbimem.c
ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default]
/usr/include/features.h:309:0: note: this is the location of the previous definition
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
ncbimisc.c: In function 'MergeStringArray':
ncbimisc.c:1269:22: warning: 'return' with no value, in function returning non-void [-Wreturn-type]
ncbimisc.c: In function 'XmlPathSuffixIs':
ncbimisc.c:2947:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbistr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbitime.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbilang.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asnbufo.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asndebin.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asnenbin.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asngen.c
asngen.c: In function 'AsnFindNthPieceOfObject':
asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asnio.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asnlex.c
asnlex.c:1322:13: warning: 'AsnLexWordUTF8' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asnlext.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asnout.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asnprint.c
asnprint.c: In function 'GetXMLModuleName':
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
asnprint.c: In function 'AsnPrintCloseStruct':
asnprint.c:1771:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable]
asnprint.c: In function 'AsnPrintModuleXMLInc':
asnprint.c:2092:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asntypes.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asngenob.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gifgen.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF togif.c
togif.c: In function 'gdImageCreateFromGif':
togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable]
togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable]
togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable]
gcc  -DNCBI_NOTHREADS_AVAIL -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
ncbithrs.c: In function 's_TlsDestroyAll':
ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function 're_match_2':
regex.c:3768:19: warning: unused variable 'destination' [-Wunused-variable]
regex.c:3915:11: warning: unused variable 'destination' [-Wunused-variable]
regex.c:3968:11: warning: unused variable 'destination' [-Wunused-variable]
regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable]
regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable]
regex.c:4107:11: warning: unused variable 'destination' [-Wunused-variable]
regex.c:4120:11: warning: unused variable 'destination' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF tsprintf.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF tree.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF matrix.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
ncbi_socket.c: In function 's_GetLocalPort':
ncbi_socket.c:386:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 's_IsConnected':
ncbi_socket.c:2435:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:220:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 'TRIGGER_Create':
ncbi_socket.c:4002:18: warning: unused variable 'x_id' [-Wunused-variable]
ncbi_socket.c: In function 's_CreateListening':
ncbi_socket.c:4454:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 's_Accept':
ncbi_socket.c:4722:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:244:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 's_CreateOnTop':
ncbi_socket.c:5174:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:142:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c:5210:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 'DSOCK_Bind':
ncbi_socket.c:6609:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
ncbi_socket.c: In function 'DSOCK_RecvMsg':
ncbi_socket.c:7002:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign]
/usr/include/arm-linux-gnueabihf/sys/socket.h:175:16: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urlquery.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF binary.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn_connection.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objacces.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objalign.c
objalign.c: In function 'CommonSeqAlignLabelFunc':
objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedSegAsnRead':
objalign.c:2169:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SparseSegAsnRead':
objalign.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedExonAsnRead':
objalign.c:2600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedSegModifierFree':
objalign.c:2858:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'ProductPosFree':
objalign.c:3031:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedExonChunkFree':
objalign.c:3204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SpliceSiteAsnRead':
objalign.c:3446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'ProtPosAsnRead':
objalign.c:3600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SparseAlignAsnRead':
objalign.c:3769:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SparseSegExtAsnRead':
objalign.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalign.c: In function 'SplicedExonChunkAsnRead':
objalign.c:3305:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objalign.c: In function 'SplicedSegModifierAsnRead':
objalign.c:2938:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objall.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objbibli.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objfeat.c
objfeat.c: In function 'ModelEvidenceSupportAsnRead':
objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ExperimentSupportAsnRead':
objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ProgramIdAsnRead':
objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'EvidenceBasisAsnRead':
objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'InferenceSupportAsnRead':
objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ModelEvidenceItemAsnRead':
objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'SeqFeatSupportAsnRead':
objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'RNAQualAsnRead':
objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'RNAQualSetAsnRead':
objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'RNAGenAsnRead':
objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'GeneNomenclatureAsnRead':
objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRPrimerAsnRead':
objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRPrimerSetAsnRead':
objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRReactionAsnRead':
objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PCRReactionSetAsnRead':
objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'CloneRefAsnRead':
objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'CloneSeqSetAsnRead':
objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'CloneSeqAsnRead':
objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'SomaticOriginAsnRead':
objfeat.c:9393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'SomaticOriginConditionAsnRead':
objfeat.c:9472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VariationRefAsnRead':
objfeat.c:9551:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ConsequenceAsnWrite':
objfeat.c:10112:12: warning: variable 'av' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead':
objfeat.c:10572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_frameshiftAsnRead':
objfeat.c:10650:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VarRefDataFree':
objfeat.c:10750:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VarRefDataSetAsnRead':
objfeat.c:10803:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_elementFree':
objfeat.c:10997:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'VariationInstAsnRead':
objfeat.c:11126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: At top level:
objfeat.c:11275:1: warning: "/*" within comment [-Wcomment]
objfeat.c: In function 'VariantPropertiesAsnRead':
objfeat.c:11304:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PhenotypeAsnRead':
objfeat.c:11625:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'PopulationDataAsnRead':
objfeat.c:11821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'ExtLocAsnRead':
objfeat.c:12034:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Seq_seqFree':
objfeat.c:12199:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'DeltaItemAsnRead':
objfeat.c:12232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objfeat.c: In function 'Consequence_elementAsnRead':
objfeat.c:10539:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objfeat.c: In function 'CodeBreakAsnWrite':
objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
objfeat.c: In function 'VarRefDataAsnRead':
objfeat.c:10965:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objgen.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objloc.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmedli.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objpub.c
objpub.c: In function 'PubLabelUnique':
objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable]
objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable]
objpub.c: In function 'PubSetAsnRead':
objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wuninitialized]
objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objres.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objscoremat.c
objscoremat.c: In function 'PssmAsnRead':
objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmIntermediateDataAsnRead':
objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmFinalDataAsnRead':
objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmParametersAsnRead':
objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'PssmWithParametersAsnRead':
objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'BlockPropertyAsnRead':
objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'CoreBlockAsnRead':
objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'LoopConstraintAsnRead':
objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'CoreDefAsnRead':
objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objscoremat.c: In function 'FormatRpsDbParametersAsnRead':
objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objseq.c
objseq.c: In function 'LinkageEvidenceAsnRead':
objseq.c:1603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objseq.c: In function 'SeqGapAsnRead':
objseq.c:1755:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objseq.c: In function 'SeqDescrAsnWriteExtra':
objseq.c:2023:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable]
objseq.c: In function 'SeqDescAsnRead':
objseq.c:2446:28: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
objseq.c: In function 'BioseqAsnRead':
objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objblock.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:45:51: warning: "/*" within comment [-Wcomment]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objsset.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objsub.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objprt.c
objprt.c: In function 'PrintFormBooleanAsnRead':
objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormEnumAsnRead':
objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormTextAsnRead':
objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'UserFormatAsnRead':
objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormAsnRead':
objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormatAsnRead':
objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintFormBlockAsnRead':
objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
objprt.c: In function 'PrintTemplateAsnRead':
objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objfdef.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objalignloc.c
objalignloc.c: In function 'AlignLocSetAsnRead':
objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c: In function 'Loc_locFree':
objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalignloc.c: In function 'AlignLocAsnRead':
objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'Loc_locAsnRead':
objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignIdFree':
objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignBoxAsnRead':
objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignRowsAsnRead':
objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignColumnsAsnRead':
objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable]
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objtable.c
objtable.c: In function 'SeqTableColumnInfoAsnRead':
objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
objtable.c: In function 'SeqTableColumnAsnRead':
objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable]
objtable.c: In function 'SeqTableColumnAsnWrite':
objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable]
objtable.c: In function 'SeqTableAsnRead':
objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'CommonStringTableAsnRead':
objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'CommonStringTableAsnWrite':
objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable]
objtable.c: In function 'CommonBytesTableAsnRead':
objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'CommonBytesTableAsnWrite':
objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable]
objtable.c: In function 'SeqTableSingleDataFree':
objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable]
objtable.c: In function 'SeqTableMultiDataAsnRead':
objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtable.c: In function 'SeqTableSparseIndexAsnRead':
objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objpubme.c
objpubme.c: In function 'PubmedEntryAsnRead':
objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objpubme.c: In function 'PubmedUrlAsnRead':
objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmdrs.c
objmdrs.c: In function 'MedlarsEntryAsnRead':
objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmdrs.c: In function 'MedlarsRecordAsnRead':
objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objproj.c
objproj.c: In function 'ProjectAsnRead':
objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable]
objproj.c: In function 'ProjectDescrAsnRead':
objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objproj.c: In function 'ProjdescFree':
objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objproj.c: In function 'ProjdescAsnRead':
objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable]
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objproj.c: In function 'ProjdescAsnRead':
objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objgbseq.c
objgbseq.c: In function 'GBSetAsnRead':
objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBSeqAsnRead':
objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBReferenceAsnRead':
objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBCommentAsnRead':
objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBStrucCommentAsnRead':
objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBFeatureAsnRead':
objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBFeatureSetAsnRead':
objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBAltSeqDataAsnRead':
objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBXrefAsnRead':
objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBCommentParagraphAsnRead':
objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBCommentItemAsnRead':
objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBStrucCommentItemAsnRead':
objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBIntervalAsnRead':
objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBQualifierAsnRead':
objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objgbseq.c: In function 'GBAltSeqItemAsnRead':
objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objtseq.c
objtseq.c: In function 'TSeqAsnRead':
objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtseq.c: In function 'TSeqSetAsnRead':
objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtseq.c: In function 'BioseqToTSeq':
objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
objtseq.c: In function 'BioseqToMiniTSeq':
objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
objinsdseq.c: In function 'INSDSetAsnRead':
objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDSeqAsnRead':
objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDReferenceAsnRead':
objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDCommentAsnRead':
objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDStrucCommentAsnRead':
objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDFeatureAsnRead':
objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDFeatureSetAsnRead':
objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDAltSeqDataAsnRead':
objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDXrefAsnRead':
objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDCommentParagraphAsnRead':
objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDCommentItemAsnRead':
objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDStrucCommentItemAsnRead':
objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDIntervalAsnRead':
objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDQualifierAsnRead':
objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objinsdseq.c: In function 'INSDAltSeqItemAsnRead':
objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmacro.c
objmacro.c: In function 'AECRActionAsnRead':
objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseActionAsnRead':
objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MacroActionListAsnRead':
objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MacroActionListAsnWrite':
objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SuspectRuleSetAsnRead':
objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SuspectRuleSetAsnWrite':
objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'WordSubstitutionAsnRead':
objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'WordSubstitutionSetAsnRead':
objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'WordSubstitutionSetAsnWrite':
objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'StringConstraintAsnRead':
objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StringConstraintSetAsnRead':
objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'StringConstraintSetAsnWrite':
objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'LocationPosConstraintFree':
objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationConstraintAsnRead':
objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalValAsnRead':
objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalValChoiceFree':
objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FeatQualLegalValChoiceAsnRead':
objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalSetAsnRead':
objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FeatQualLegalSetAsnWrite':
objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FeatQualChoiceFree':
objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FeatQualChoiceAsnRead':
objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatureFieldAsnRead':
objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatureFieldLegalAsnRead':
objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FeatureFieldPairAsnRead':
objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RnaFeatTypeFree':
objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RnaQualAsnRead':
objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RnaQualPairAsnRead':
objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualPairAsnRead':
objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualChoiceFree':
objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualTextValAsnRead':
objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualValChoiceFree':
objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceQualValSetAsnRead':
objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SourceQualValSetAsnWrite':
objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtFieldPairAsnRead':
objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldFree':
objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoMoleculePairAsnRead':
objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoTechniquePairAsnRead':
objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoCompletednessPairAsnRead':
objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoMolClassPairAsnRead':
objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoTopologyPairAsnRead':
objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoStrandPairAsnRead':
objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldPairFree':
objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldListAsnRead':
objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldListAsnWrite':
objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MolinfoFieldConstraintAsnRead':
objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StructuredCommentFieldFree':
objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StructuredCommentFieldPairAsnRead':
objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'StructuredCommentFieldPairAsnWrite':
objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'DBLinkFieldPairAsnRead':
objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PubFieldConstraintAsnRead':
objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PubFieldSpecialConstraintTypeFree':
objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PubFieldSpecialConstraintAsnRead':
objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PublicationConstraintAsnRead':
objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SourceConstraintAsnRead':
objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead':
objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtConstraintFieldFree':
objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead':
objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead':
objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite':
objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FieldConstraintAsnRead':
objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FieldConstraintAsnWrite':
objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'FieldTypeFree':
objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree':
objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'QuantityConstraintFree':
objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SequenceConstraintAsnRead':
objmacro.c:8945:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:8944:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TranslationConstraintAsnRead':
objmacro.c:9170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:9169:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConstraintChoiceFree':
objmacro.c:9322:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9384:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConstraintChoiceSetAsnRead':
objmacro.c:9616:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:9613:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'ConstraintChoiceSetAsnWrite':
objmacro.c:9669:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'TextMarkerFree':
objmacro.c:9709:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9741:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TextPortionAsnRead':
objmacro.c:9937:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:9936:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FieldEditAsnRead':
objmacro.c:10153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:10152:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FieldPairTypeFree':
objmacro.c:10300:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10350:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyActionAsnRead':
objmacro.c:10567:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:10566:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditActionAsnRead':
objmacro.c:10744:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:10743:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditActionAsnWrite':
objmacro.c:10819:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'TextTransformFree':
objmacro.c:10875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'TextTransformAsnRead':
objmacro.c:10910:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TextTransformSetAsnRead':
objmacro.c:11081:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11078:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'TextTransformSetAsnWrite':
objmacro.c:11134:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'ConvertActionAsnRead':
objmacro.c:11214:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11213:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CopyActionAsnRead':
objmacro.c:11406:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11405:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SwapActionAsnRead':
objmacro.c:11572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11571:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SwapActionAsnWrite':
objmacro.c:11647:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'AECRParseActionAsnRead':
objmacro.c:11745:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11744:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveActionAsnRead':
objmacro.c:11961:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:11960:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveActionAsnWrite':
objmacro.c:12029:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'RemoveOutsideActionAsnRead':
objmacro.c:12119:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:12118:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ActionChoiceFree':
objmacro.c:12259:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12312:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcOrgChoiceFree':
objmacro.c:12499:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12528:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcOrgAsnRead':
objmacro.c:12711:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:12710:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcGeneralIdFree':
objmacro.c:12839:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12871:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseSrcFree':
objmacro.c:13027:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13065:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseDstOrgAsnRead':
objmacro.c:13319:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:13318:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ParseDestFree':
objmacro.c:13447:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13485:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationIntervalAsnRead':
objmacro.c:13693:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:13692:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationChoiceFree':
objmacro.c:13818:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13850:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SequenceListAsnRead':
objmacro.c:14024:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14021:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SequenceListAsnWrite':
objmacro.c:14077:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'SequenceListChoiceFree':
objmacro.c:14117:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SequenceListChoiceAsnRead':
objmacro.c:14149:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyFeatureActionAsnRead':
objmacro.c:14338:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14337:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveFeatureActionAsnRead':
objmacro.c:14602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14601:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFromCDSOptionsAsnRead':
objmacro.c:14766:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:14765:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFeatureSrcOptionsFree':
objmacro.c:14900:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead':
objmacro.c:14932:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RegionTypeAsnRead':
objmacro.c:15099:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15098:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFeatureDstOptionsFree':
objmacro.c:15215:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15250:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ConvertFeatureActionAsnRead':
objmacro.c:15464:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15463:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditLocationStrandAsnRead':
objmacro.c:15670:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15669:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'Partial5SetActionAsnRead':
objmacro.c:15831:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15830:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'Partial3SetActionAsnRead':
objmacro.c:15992:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:15991:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'PartialBothSetActionAsnRead':
objmacro.c:16153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16152:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ExtendToFeatureAsnRead':
objmacro.c:16315:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16314:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'LocationEditTypeFree':
objmacro.c:16452:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16499:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'EditFeatureLocationActionAsnRead':
objmacro.c:16774:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16773:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoBlockAsnRead':
objmacro.c:16971:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:16970:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MolinfoBlockAsnWrite':
objmacro.c:17053:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'RemoveDescriptorActionAsnRead':
objmacro.c:17151:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17150:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AutodefActionAsnRead':
objmacro.c:17317:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixPubCapsActionAsnRead':
objmacro.c:17488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17487:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SortFieldsActionAsnRead':
objmacro.c:17690:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17689:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixAuthorCapsAsnRead':
objmacro.c:17866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:17865:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixCapsActionFree':
objmacro.c:17982:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18017:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixFormatActionFree':
objmacro.c:18189:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18218:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead':
objmacro.c:18422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:18421:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'GeneXrefTypeAsnRead':
objmacro.c:18613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:18612:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'XrefTypeFree':
objmacro.c:18747:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'XrefTypeAsnRead':
objmacro.c:18779:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveXrefsActionAsnRead':
objmacro.c:18948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:18947:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveXrefsActionAsnWrite':
objmacro.c:19023:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MakeGeneXrefActionAsnRead':
objmacro.c:19116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19115:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AuthorFixActionAsnRead':
objmacro.c:19281:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19280:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'UpdateSequencesActionAsnRead':
objmacro.c:19447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19446:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CreateTSAIdsSrcFree':
objmacro.c:19574:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'CreateTSAIdsSrcAsnRead':
objmacro.c:19606:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'CreateTSAIdsActionAsnRead':
objmacro.c:19787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19786:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AutofixActionAsnRead':
objmacro.c:19966:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:19965:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'FixSetsActionFree':
objmacro.c:20084:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20113:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TableMatchTypeFree':
objmacro.c:20269:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20301:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'TableMatchAsnRead':
objmacro.c:20547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:20546:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyTableExtraDataFree':
objmacro.c:20675:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ApplyTableExtraDataAsnRead':
objmacro.c:20704:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ApplyTableActionAsnRead':
objmacro.c:20877:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:20876:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AddFileActionAsnRead':
objmacro.c:21057:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:21056:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AddDescriptorListActionAsnRead':
objmacro.c:21225:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:21224:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'AddDescriptorListActionAsnWrite':
objmacro.c:21300:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'RemoveSequencesActionAsnRead':
objmacro.c:21393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:21392:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'RemoveSequencesActionAsnWrite':
objmacro.c:21461:12: warning: unused variable 'av' [-Wunused-variable]
objmacro.c: In function 'MacroActionChoiceFree':
objmacro.c:21512:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21613:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SearchFuncFree':
objmacro.c:22093:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22131:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SimpleReplaceAsnRead':
objmacro.c:22400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:22399:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ReplaceFuncFree':
objmacro.c:22536:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmacro.c: In function 'ReplaceFuncAsnRead':
objmacro.c:22571:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'ReplaceRuleAsnRead':
objmacro.c:22751:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:22750:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'SuspectRuleAsnRead':
objmacro.c:22921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmacro.c:22920:12: warning: unused variable 'isError' [-Wunused-variable]
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21852:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20172:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18284:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18084:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12930:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9466:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9800:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10416:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12382:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12580:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13160:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13552:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13906:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15320:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16603:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20392:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22236:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objent2.c
objent2.c: In function 'Entrez2IdListAsnRead':
objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2BooleanExpAsnRead':
objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2BooleanElementFree':
objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LimitsAsnRead':
objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2BooleanTermAsnRead':
objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2RequestAsnRead':
objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'E2RequestFree':
objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'E2RequestAsnRead':
objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2EvalBooleanAsnRead':
objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2TermQueryAsnRead':
objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2TermPosAsnRead':
objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2HierQueryAsnRead':
objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2GetLinksAsnRead':
objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2IdAsnRead':
objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DtFilterAsnRead':
objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2ReplyAsnRead':
objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'E2ReplyFree':
objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2InfoAsnRead':
objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2BooleanReplyAsnRead':
objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DocsumListAsnRead':
objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2TermListAsnRead':
objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2HierNodeAsnRead':
objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2LinkSetAsnRead':
objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LinkCountListAsnRead':
objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2DbInfoAsnRead':
objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2FieldInfoAsnRead':
objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LinkInfoAsnRead':
objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead':
objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2DocsumAsnRead':
objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c: In function 'Entrez2DocsumDataAsnRead':
objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2TermAsnRead':
objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2LinkCountAsnRead':
objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable]
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ent2api.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pmfapi.c
pmfapi.c: In function 'PubMedSynchronousQuery':
pmfapi.c:1224:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'PubSeqSynchronousQueryEx':
pmfapi.c:1458:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'PubSeqSynchronousQueryTI':
pmfapi.c:1636:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'PubSeqSynchronousQuerySRA':
pmfapi.c:1717:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'GiRevHistSynchronousQuery':
pmfapi.c:1790:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'GiAccVerSynchronousQuery':
pmfapi.c:1842:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'AccnRevHistSynchronousQuery':
pmfapi.c:1893:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'GiSeqIdSetSynchronousQuery':
pmfapi.c:1944:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
pmfapi.c: In function 'AccnListSynchronousQuery':
pmfapi.c:1994:12: warning: 'starttime' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objtax3.c
objtax3.c: In function 'Taxon3RequestAsnRead':
objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3RequestFree':
objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'SequenceOfIntAsnRead':
objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'Taxon3ReplyAsnRead':
objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3ReplyFree':
objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3ErrorAsnRead':
objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3DataAsnRead':
objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'Value_valueFree':
objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: In function 'T3RefreshFlagsAsnRead':
objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objtax3.c: In function 'T3ReplyAsnRead':
objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax3.c: In function 'T3RequestAsnRead':
objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax3.c:1361:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF tax3api.c
tax3api.c: In function 'Tax3SynchronousQuery':
tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'CheckSuggestedFixes':
tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'TryNewSuggestedFixes':
tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'GetSuggestedNamesFromRank':
tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
tax3api.c: In function 'BioSourceFromBioSample':
tax3api.c:3220:16: warning: unused variable 'max' [-Wunused-variable]
tax3api.c: At top level:
tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function]
tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function]
tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function]
tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function]
tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function]
tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objegkludge.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objentgene.c
objentgene.c: In function 'EntrezgeneAsnRead':
objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'EntrezgeneSetAsnRead':
objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable]
objentgene.c: In function 'EntrezgeneSetAsnWrite':
objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable]
objentgene.c: In function 'GeneTrackAsnRead':
objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'GeneCommentaryAsnRead':
objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'Method_methodFree':
objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'Method_methodAsnRead':
objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'GeneSourceAsnRead':
objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'XtraTermsAsnRead':
objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'OtherSourceAsnRead':
objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable]
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objentgene.c:1166:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmla2.c
objmla2.c: In function 'Mla2RequestFree':
objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
objmla2.c: In function 'TitleMsg2AsnRead':
objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
objmla2.c: In function 'TitleMsgList2AsnRead':
objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmla2.c: In function 'Mla2BackAsnRead':
objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mla2api.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF qblastapi.c
qblastapi.c: In function 'SecondQBlastCallback':
qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable]
qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx':
qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx':
qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmim.c
objmim.c: In function 'MimSetAsnRead':
objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimDateAsnRead':
objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimEntryAsnRead':
objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimCitAsnRead':
objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimTextAsnRead':
objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimEditItemAsnRead':
objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimAllelicVariantAsnRead':
objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimIndexTermAsnRead':
objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimReferenceAsnRead':
objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c: In function 'MimLinkAsnRead':
objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimAuthorAsnRead':
objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable]
objmim.c: In function 'MimPageAsnRead':
objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objvalid.c
objvalid.c: In function 'FieldRuleAsnRead':
objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable]
objvalid.c: In function 'FieldSetAsnRead':
objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'FieldSetAsnWrite':
objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'DependentFieldRuleAsnRead':
objvalid.c:390:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:389:12: warning: unused variable 'isError' [-Wunused-variable]
objvalid.c: In function 'DependentFieldSetAsnRead':
objvalid.c:573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:570:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'DependentFieldSetAsnWrite':
objvalid.c:626:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'CommentRuleAsnRead':
objvalid.c:708:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:707:12: warning: unused variable 'isError' [-Wunused-variable]
objvalid.c: In function 'CommentSetAsnRead':
objvalid.c:898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objvalid.c:895:12: warning: unused variable 'av' [-Wunused-variable]
objvalid.c: In function 'CommentSetAsnWrite':
objvalid.c:951:12: warning: unused variable 'av' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mimapi.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cddapi.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqport.c
seqport.c: In function 'productLoc_to_locationLoc':
seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'NaLocFromNaInterval':
seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'dnaLoc_to_aaLoc':
seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable]
seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'DeltaRevComp':
seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'SeqSearchEnterNucWord':
seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
seqport.c: In function 'ProtSearchEnterProtWord':
seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sequtil.c
sequtil.c: In function 'GetPointsForLeftAndRightOffsets':
sequtil.c:7959:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'SeqPointWriteEx':
sequtil.c:8492:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'TaxNameFromCommon':
sequtil.c:8648:5: warning: missing braces around initializer [-Wmissing-braces]
sequtil.c:8648:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces]
sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr':
sequtil.c:9470:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'SeqIdFromAccessionEx':
sequtil.c:10070:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable]
sequtil.c: In function 'BSCompressDNAOld':
sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'GenericCompressDNAEx':
sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'BSConvertSeq':
sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'SeqLocCoverage':
sequtil.c:6905:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
sequtil.c: In function 'GetThePointForOffsetEx':
sequtil.c:7919:14: warning: 'last_strand' may be used uninitialized in this function [-Wuninitialized]
sequtil.c:7900:14: warning: 'first_strand' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prtutil.c
prtutil.c: In function 'StdFormatPrint':
prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from simple.c:69:0:
../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default]
../include/all.h:5745:0: note: this is the location of the previous definition
simple.c: In function 'SimpleSeqAsnRead':
simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wuninitialized]
simple.c:170:17: note: 'b' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF tofasta.c
tofasta.c: In function 'DoSpecialDefline':
tofasta.c:1407:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
tofasta.c: At top level:
tofasta.c:3072:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function]
tofasta.c:3101:16: warning: 'get_descr' defined but not used [-Wunused-function]
tofasta.c:3196:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function]
tofasta.c:3359:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function]
tofasta.c:3445:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function]
tofasta.c:3479:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function]
tofasta.c: In function 'FastaReadSequenceInternalEx':
tofasta.c:2476:43: warning: 'mask_to' may be used uninitialized in this function [-Wuninitialized]
tofasta.c: In function 'FastaToSeqEntryInternalExEx':
tofasta.c:2852:19: warning: 'fd' may be used uninitialized in this function [-Wuninitialized]
tofasta.c:2672:25: warning: 'firstchar' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF tofile.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF tomedlin.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF valid.c
valid.c: In function 'Valid1GatherProc':
valid.c:2238:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqIdCase':
valid.c:3342:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateGenProdSet':
valid.c:5551:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CountAdjacentProc':
valid.c:6193:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioseqInst':
valid.c:6584:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
valid.c:6526:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioSource':
valid.c:13688:19: warning: variable 'id' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateDblink':
valid.c:14737:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqDescrCommon':
valid.c:14795:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioseqContextIndexed':
valid.c:17742:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
valid.c:17154:41: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBarcodeIndexNumber':
valid.c:18667:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateBioseqContext':
valid.c:18775:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateRptUnit':
valid.c:20323:32: warning: variable 'found' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CheckForCommonCDSProduct':
valid.c:22238:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable]
valid.c:22235:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CheckForIllegalDbxref':
valid.c:22617:16: warning: variable 'id' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateAnticodon':
valid.c:23348:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable]
valid.c:23347:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
valid.c: In function 'IsGeneXrefRedundant':
valid.c:24599:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqFeat':
valid.c:24763:19: warning: variable 'count' set but not used [-Wunused-but-set-variable]
valid.c:24741:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CdTransCheck':
valid.c:26675:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'SpliceCheckEx':
valid.c:27477:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
valid.c: In function 'CdsProductIdCheck':
valid.c:27823:15: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
valid.c: In function 'ValidateSeqLoc':
valid.c:27887:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
valid.c:27886:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
valid.c: At top level:
valid.c:1415:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function]
valid.c:4089:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function]
valid.c:5438:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function]
valid.c:6450:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function]
valid.c:9394:16: warning: 'ConsistentWithC' defined but not used [-Wunused-function]
valid.c:12157:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function]
valid.c:12959:16: warning: 'LatLonInRange' defined but not used [-Wunused-function]
valid.c:13056:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function]
valid.c:18292:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function]
valid.c:18342:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function]
valid.c:24281:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF valapi.c
valapi.c: In function 'DoesStringMatchExpression':
valapi.c:253:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable]
valapi.c: In function 'ReorderStructuredCommentFields':
valapi.c:777:82: warning: unused variable 'ufp_last' [-Wunused-variable]
valapi.c:777:72: warning: unused variable 'ufp_next' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF alignmgr.c
alignmgr.c: In function 'AlnMgrIndexParentSA':
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
alignmgr.c: In function 'AlnMgrGetNthBlockRange':
alignmgr.c:4182:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx':
alignmgr.c:5157:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable]
alignmgr.c: In function 'AlnMgrMapBioseqToBioseq':
alignmgr.c:10840:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
alignmgr.c:5405:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function]
alignmgr.c:10572:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function]
alignmgr.c:6123:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function]
alignmgr.c:6650:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function]
alignmgr.c: In function 'AlnMgrUnpackSeqAlign':
alignmgr.c:1149:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList':
alignmgr.c:1755:23: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA':
alignmgr.c:4115:19: warning: 'tmp_end' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:4113:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'am_is_consistent':
alignmgr.c:10114:43: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrGetSubAlign':
alignmgr.c:9097:15: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster':
alignmgr.c:5829:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:5553:17: note: 'sip_tmp' was declared here
alignmgr.c:5881:25: warning: 'sip_tmp' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:5846:18: note: 'sip_tmp' was declared here
alignmgr.c:5865:11: warning: 'sip_head' may be used uninitialized in this function [-Wuninitialized]
alignmgr.c:5845:18: note: 'sip_head' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF aliparse.c
aliparse.c: In function 's_IsInterleaved':
aliparse.c:930:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_ProcessInterId':
aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_ProcessInterSeq':
aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_AnalyzeInterleaved':
aliparse.c:1193:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c: In function 's_ProcessContigId':
aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_ProcessContigSeq':
aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 's_AnalyzeContiguous':
aliparse.c:1603:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c: In function 's_CheckContext':
aliparse.c:2151:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
aliparse.c: In function 'PrintOutMultAlign':
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable]
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function]
aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function]
aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function]
aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function]
aliparse.c: In function 's_GetRowIdString':
aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wuninitialized]
aliparse.c: In function 's_ProcessMaybes':
aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wuninitialized]
aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wuninitialized]
aliparse.c: In function 'Ali_Read':
aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wuninitialized]
aliparse.c:1154:20: note: 'previousLength' was declared here
aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wuninitialized]
aliparse.c:820:20: note: 'seqLinePtr' was declared here
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF aliread.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF alignval.c
alignval.c: In function 'ValidateSeqlengthInDenseSeg':
alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
alignval.c: In function 'PercentStringMatch':
alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'CheckAlnSeqLens':
alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'ValidateSeqAlign':
alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'GetAlignmentColumnPercentIdentities':
alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
alignval.c: In function 'WeightedAlignmentPercentIdentity':
alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function]
alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function]
alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
sqnutil1.c: In function 'GeneExtendFunc':
sqnutil1.c:2514:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'ParseAnticodon':
sqnutil1.c:3961:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'ParseCodeBreak':
sqnutil1.c:4081:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'CleanOrgModListEx':
sqnutil1.c:6280:19: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sqnutil1.c: In function 'CleanUpPubdescAuthors':
sqnutil1.c:9213:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs':
sqnutil1.c:14155:24: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'LinkTwoFeatures':
sqnutil1.c:18204:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable]
sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback':
sqnutil1.c:18750:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable]
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil1.c:2509:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function]
sqnutil1.c:5290:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function]
sqnutil1.c:7645:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function]
sqnutil1.c:10250:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function]
sqnutil1.c:10364:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
sqnutil2.c: In function 'FindResidueByName':
sqnutil2.c:5197:11: warning: variable 'last' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'ReadFeatureTableEx':
sqnutil2.c:7202:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable]
sqnutil2.c:7194:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'SeqEntryCopyReplace':
sqnutil2.c:9199:8: warning: variable 'type' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'StreamingReadBioseq':
sqnutil2.c:10024:10: warning: variable 'level' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'StreamAsnForDescriptors':
sqnutil2.c:10257:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
sqnutil2.c: In function 'StreamingReadWriteSeqSubmit':
sqnutil2.c:10637:1: warning: label 'ret' defined but not used [-Wunused-label]
sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors':
sqnutil2.c:10676:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
sqnutil2.c: In function 'ReadFeatureTableFile':
sqnutil2.c:11627:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'ReadFastaOnly':
sqnutil2.c:11821:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline':
sqnutil2.c:12352:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'PrintQualityScoresToBuffer':
sqnutil2.c:12958:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'GetScoresbySeqId':
sqnutil2.c:13367:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'IsStringInSpanInList':
sqnutil2.c:17223:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable]
sqnutil2.c:17221:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'CreateStructuredCommentsFromFile':
sqnutil2.c:19251:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'AlignmentIntervalToString':
sqnutil2.c:19615:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable]
sqnutil2.c:19614:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'AdjustForConsensusSpliceCallback':
sqnutil2.c:20781:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable]
sqnutil2.c: In function 'RemoveGIProc':
sqnutil2.c:21356:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil2.c:4661:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function]
sqnutil2.c:8266:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function]
sqnutil2.c:16055:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap':
sqnutil3.c:526:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'CautiousSeqEntryCleanup':
sqnutil3.c:2265:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences':
sqnutil3.c:3376:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
sqnutil3.c:3370:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx':
sqnutil3.c:5124:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable]
sqnutil3.c:5118:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable]
sqnutil3.c:5118:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'GetCDSformRNA':
sqnutil3.c:19157:8: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'FindTextInFlatfileEx':
sqnutil3.c:20891:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'CheckForTitleAuthorConflicts':
sqnutil3.c:21972:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable]
sqnutil3.c: In function 'SortVnpByBspProjectId':
sqnutil3.c:25733:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress]
sqnutil3.c: In function 'GetDiscrepancyItemTextEx':
sqnutil3.c:28202:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable]
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil3.c:9621:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function]
sqnutil3.c:9672:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function]
sqnutil3.c:9755:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function]
sqnutil3.c:10252:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function]
sqnutil3.c:13399:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function]
sqnutil3.c:16581:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function]
sqnutil3.c:18676:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function]
sqnutil3.c:19971:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function]
sqnutil3.c:23725:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function]
sqnutil3.c:31396:13: warning: 'FindBadGPS' defined but not used [-Wunused-function]
sqnutil3.c:31404:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function]
sqnutil3.c:33544:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function]
sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback':
sqnutil3.c:889:23: warning: 'best_diff' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'ValidateInferenceQualifier':
sqnutil3.c:6033:6: warning: 'rest' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c:6087:13: warning: 'best' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'CheckForDivConflicts':
sqnutil3.c:7901:28: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'tRNASameStrandBioseqCallback':
sqnutil3.c:16126:8: warning: 'strand' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'FindMismatchedComments':
sqnutil3.c:25390:47: warning: 'sdp' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'FixCountryColons':
sqnutil3.c:7523:14: warning: 'biop' may be used uninitialized in this function [-Wuninitialized]
sqnutil3.c: In function 'AddmRNAForCDS':
sqnutil3.c:19565:3: warning: 'rna' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
sqnutil4.c: In function 'ListClauses':
sqnutil4.c:8272:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'SmashOneTallClause':
sqnutil4.c:9576:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'GetFeatureClauseForSeg':
sqnutil4.c:10448:21: warning: variable 'start' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'IsAmplifiedMiscFeat':
sqnutil4.c:10702:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:13849:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'ExtraCDSCreationActions':
sqnutil4.c:14728:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'TESTDisplayQualCombo':
sqnutil4.c:15752:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS':
sqnutil4.c:17198:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'AddNewUniqueAnnotations':
sqnutil4.c:17372:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'AssignBioseqToLineageGroup':
sqnutil4.c:18024:27: warning: variable 'vnp_last' set but not used [-Wunused-but-set-variable]
sqnutil4.c: In function 'ImportNucleotideFASTASequencesFromFile':
sqnutil4.c:26442:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
sqnutil4.c:4945:13: warning: 'CountFeatures' defined but not used [-Wunused-function]
sqnutil4.c:9510:13: warning: 'RemoveFeats' defined but not used [-Wunused-function]
sqnutil4.c:9674:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function]
sqnutil4.c:9705:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function]
sqnutil4.c:15584:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function]
sqnutil4.c:15872:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function]
sqnutil4.c:15901:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function]
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:14023:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF subutil.c
subutil.c: In function 'AddSeqLitToBioseq':
subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
subutil.c: In function 'AddReferenceToSegmentedEntry':
subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
subutil.c: In function 'GetDNAConv':
subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'GetProteinConv':
subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'AddBasesToByteStore':
subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'AddAAsToByteStore':
subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts]
subutil.c: In function 'CitArtBuild':
subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
subutil.c: At top level:
subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function]
subutil.c: In function 'AddGapToSegmentedEntry':
subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF edutil.c
edutil.c: In function 'SeqLocsToDeltaSeqs':
edutil.c:795:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqLocCopyPart':
edutil.c:2243:13: warning: variable 'done' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'IndexedSeqFeatsCopy':
edutil.c:2400:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqFeatsCopy':
edutil.c:2504:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqLocInsert':
edutil.c:3686:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdRecreateDeletedFeats':
edutil.c:4212:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdSeqLocInsert':
edutil.c:4512:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdSeqLocDelete':
edutil.c:5069:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'SeqEdInsertAdjustFeat':
edutil.c:5300:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
edutil.c: In function 'SeqEdDeleteFromBsp':
edutil.c:6485:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
edutil.c:6548:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
edutil.c:6437:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable]
edutil.c:6428:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable]
edutil.c: In function 'BioseqCopyEx':
edutil.c:2152:25: warning: 'head' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
asn2ff1.c: In function 'asn2ff_print':
asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable]
asn2ff1.c: In function 'Asn2ffJobCreate':
asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable]
asn2ff1.c: In function 'SeqEntryToEntrez':
asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable]
asn2ff1.c: In function 'SeqLocToFlat':
asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable]
asn2ff1.c: In function 'asn2ff_setup':
asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
asn2ff1.c: In function 'PrintStatusLine':
asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable]
asn2ff1.c: In function 'asn2gb_setup':
asn2ff1.c:2403:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2ff1.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function]
asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function]
asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function]
asn2ff1.c: In function 'asn2gp_setup':
asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wuninitialized]
asn2ff1.c: In function 'asn2embl_setup':
asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wuninitialized]
asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq':
asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
asn2ff2.c: In function 'GetStrForBankit':
asn2ff2.c:518:9: warning: unused variable 'i' [-Wunused-variable]
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:769:34: warning: unused variable 'string' [-Wunused-variable]
asn2ff2.c: In function 'GP_GetSeqDescrComms':
asn2ff2.c:1163:10: warning: unused variable 'got_comment' [-Wunused-variable]
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wreturn-type]
asn2ff2.c: In function 'GetGibbsqCommentLength':
asn2ff2.c:1600:7: warning: unused variable 'gibbsq' [-Wunused-variable]
asn2ff2.c: In function 'GatherDescrByChoice':
asn2ff2.c:1864:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable]
asn2ff2.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff2.c:232:16: warning: 'has_comment' defined but not used [-Wunused-variable]
asn2ff2.c:680:16: warning: 'GetEvidence' defined but not used [-Wunused-function]
asn2ff2.c:1190:16: warning: 'GetSPBlock' defined but not used [-Wunused-function]
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:829:8: warning: 'is_other' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
asn2ff3.c: In function 'PutGeneFirst':
asn2ff3.c:1662:26: warning: unused variable 'qual_temp' [-Wunused-variable]
asn2ff3.c:1661:10: warning: unused variable 'still_looking' [-Wunused-variable]
asn2ff3.c: In function 'mRNAEvidenceComment':
asn2ff3.c:1746:9: warning: unused variable 'Locus_id' [-Wunused-variable]
asn2ff3.c: In function 'Add_gene_id':
asn2ff3.c:3306:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat]
asn2ff3.c: In function 'Add_trid':
asn2ff3.c:3712:7: warning: unused variable 'gi' [-Wunused-variable]
asn2ff3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff3.c:3291:13: warning: 'Add_gene_id' defined but not used [-Wunused-function]
asn2ff3.c: In function 'GettRNAaa':
asn2ff3.c:2207:6: warning: 'seq_code' may be used uninitialized in this function [-Wuninitialized]
asn2ff3.c: In function 'Add_dbxref.isra.0':
asn2ff3.c:858:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
asn2ff4.c: In function 'FlatLocPoint':
asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable]
asn2ff4.c: In function 'do_FlatLoc':
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type]
asn2ff4.c: In function 'CreateImpFeatFromProt':
asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
asn2ff4.c: In function 'MatchNAGeneToFeat':
asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
asn2ff4.c: In function 'MatchAAGeneToFeat':
asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
asn2ff4.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff4.c: In function 'CheckNewSfpLoc':
asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
asn2ff5.c: In function 'format_cit_sub':
asn2ff5.c:1023:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable]
asn2ff5.c: In function 'format_thesis':
asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
asn2ff5.c: In function 'format_book':
asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
asn2ff5.c: In function 'format_jourarticle':
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asn2ff5.c: In function 'StripParanthesis':
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
asn2ff5.c: In function 'PostARefErrMessage':
asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable]
asn2ff5.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function]
asn2ff5.c: In function 'CheckPubs':
asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wuninitialized]
asn2ff5.c: In function 'FlatJournal':
asn2ff5.c:1946:23: warning: 'temp' may be used uninitialized in this function [-Wuninitialized]
asn2ff5.c:1151:10: warning: 'afp' may be used uninitialized in this function [-Wuninitialized]
asn2ff5.c:1051:11: note: 'afp' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
asn2ff6.c: In function 'AddGBQual':
asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable]
asn2ff6.c: In function 'BioseqGetGBDivCodeEx':
asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
asn2ff6.c: In function 'GR_PrintPubs':
asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable]
asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable]
asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable]
asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable]
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable]
asn2ff6.c: In function 'ValidateOtherAccession':
asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable]
asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable]
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable]
asn2ff6.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function]
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2866:33: warning: 'exp' may be used uninitialized in this function [-Wuninitialized]
asn2ff6.c: In function 'MakeBaseLocusAwp':
asn2ff6.c:3093:17: warning: 'num_of_digits' may be used uninitialized in this function [-Wuninitialized]
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
asn2gnb1.c: In function 'IsWholeWordSubstr':
asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'DoOneSection':
asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'Count2Seg':
asn2gnb1.c:3215:18: warning: variable 'to' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:3213:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: At top level:
asn2gnb1.c:3492:3: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3492:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces]
asn2gnb1.c: In function 'SeqIdWriteForTable':
asn2gnb1.c:5571:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:5570:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'DoImmediateFormat':
asn2gnb1.c:6704:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb1.c:6683:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'asn2gnbk_format':
asn2gnb1.c:6825:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb1.c: In function 'asn2gnbk_cleanup':
asn2gnb1.c:6871:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: In function 'SeqEntryToGnbk':
asn2gnb1.c:7057:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable]
asn2gnb1.c:7052:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable]
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
asn2gnb2.c: In function 's_LocusAddSuffix':
asn2gnb2.c:206:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable]
asn2gnb2.c: In function 'AddLocusBlock':
asn2gnb2.c:1323:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2gnb2.c: In function 'AddDblinkBlock':
asn2gnb2.c:2756:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable]
asn2gnb2.c: In function 'GetRefsOnBioseq':
asn2gnb2.c:5448:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
asn2gnb2.c:5445:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb2.c:5439:22: warning: variable 'right' set but not used [-Wunused-but-set-variable]
asn2gnb2.c:5433:22: warning: variable 'left' set but not used [-Wunused-but-set-variable]
asn2gnb2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
asn2gnb3.c: In function 'GetStatusForRefTrack':
asn2gnb3.c:601:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetSourcesOnBioseq':
asn2gnb3.c:4151:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:4149:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:4148:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetFeatsOnCdsProduct':
asn2gnb3.c:5007:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct':
asn2gnb3.c:5155:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5154:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5153:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5152:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5151:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: In function 'GetFeatsOnBioseq':
asn2gnb3.c:5376:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
asn2gnb3.c:5349:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable]
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
asn2gnb4.c: In function 'FormatFeatureBlockQuals':
asn2gnb4.c:3591:50: warning: "/*" within comment [-Wcomment]
asn2gnb4.c:2969:24: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb4.c:2910:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable]
asn2gnb4.c: In function 'FF_asn2gb_www_featkey':
asn2gnb4.c:5180:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:6354:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat':
asn2gnb4.c:8448:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb4.c: In function 'FormatFeatureQuals':
asn2gnb4.c:8521:19: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:7398:24: warning: 'sep' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
asn2gnb5.c: In function 'FormatCitBookArt':
asn2gnb5.c:1874:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
asn2gnb6.c: In function 'FlatLocElement':
asn2gnb6.c:2390:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
asn2gnb6.c: In function 'FormatContigBlock':
asn2gnb6.c:5401:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
asn2gnb6.c: In function 'FormatSequenceBlock':
asn2gnb6.c:5855:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function 'CkLabelType':
gbfeat.c:1530:4: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gbftglob.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gbparint.c
gbparint.c: In function 'Nlm_gbparselex':
gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gbparint.c: In function 'Nlm_gbparselex_ver':
gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces]
utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF utilpub.c
utilpub.c: In function 'FindCit':
utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
utilpub.c: In function 'ChangeCitQual':
utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable]
utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ffprint.c
ffprint.c: In function 'FFBSPrint':
ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable]
ffprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF wprint.c
wprint.c: In function 'LocPrintGenome':
wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable]
wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable]
wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable]
wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable]
wprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable]
wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable]
wprint.c: In function 'www_xref':
wprint.c:1376:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized]
wprint.c:1376:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized]
wprint.c: In function 'www_xref_button':
wprint.c:1419:12: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized]
wprint.c:1419:7: warning: 'link' may be used uninitialized in this function [-Wuninitialized]
wprint.c: In function 'PrintSPBlock':
wprint.c:1612:13: warning: 's' may be used uninitialized in this function [-Wuninitialized]
wprint.c:1601:13: warning: 'prefix' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF satutil.c
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
satutil.c: At top level:
satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function]
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqmgr.c
seqmgr.c: In function 'SeqEntrySetScope':
seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'ClearBioseqFindCache':
seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp':
seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'CheckForTransSplice':
seqmgr.c:5644:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
seqmgr.c: In function 'SeqEntryAsnOut':
seqmgr.c:11692:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable]
seqmgr.c:11692:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable]
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
seqmgr.c: In function 'SeqMgrGetNextDescriptor':
seqmgr.c:9580:56: warning: 'bssp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmgr.c
objmgr.c: In function 'ObjMgrSelectFunc2':
objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
objmgr.c: In function 'ObjMgrAlsoSelect':
objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized]
objmgr.c:4030:22: note: 'ssp' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gather.c
gather.c: In function 'AttachDataProc':
gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable]
gather.c: In function 'GatherSeqFeat':
gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wuninitialized]
gather.c:1530:56: warning: 'max_interval' may be used uninitialized in this function [-Wuninitialized]
gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wuninitialized]
gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wuninitialized]
gather.c: In function 'gather_align_data':
gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wuninitialized]
gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wuninitialized]
gather.c: In function 'GatherBioseqFunc':
gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wuninitialized]
gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wuninitialized]
gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF findrepl.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF codon.c
codon.c: In function 'make_cds_paragraph':
codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF jzcoll.c
jzcoll.c: In function 'load_default_matrix':
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c: In function 'GetUseThisGi':
jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable]
jzcoll.c: In function 'buffer_for_feature':
jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable]
jzcoll.c: In function 'ProcessTextInsertion':
jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable]
jzcoll.c: In function 'satcollfunc':
jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable]
jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable]
jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable]
jzcoll.c: In function 'collect_anpnode_with_option':
jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable]
jzcoll.c: In function 'ck_seqfeat_extra':
jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable]
jzcoll.c: In function 'load_open_close_sts_mark':
jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable]
jzcoll.c: In function 'FeatNodeCompProc':
jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable]
jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable]
jzcoll.c: At top level:
jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function]
jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function]
jzcoll.c: In function 'load_text':
jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF jzmisc.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF maputil.c
maputil.c: In function 'load_gene_list':
maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable]
maputil.c: In function 'gmarkfunc':
maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mconsist.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF macroapi.c
macroapi.c: In function 'AdvancedStringCompare':
macroapi.c:4416:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'RemoveGBQualMatch':
macroapi.c:6919:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'SetNameInPrimerList':
macroapi.c:10517:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'SetSeqInPrimerList':
macroapi.c:10538:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'GetCitListsForSeqEntry':
macroapi.c:15443:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
macroapi.c:15441:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'GetPubMLStatus':
macroapi.c:17914:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat':
macroapi.c:24814:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat':
macroapi.c:24937:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat':
macroapi.c:25004:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'FindPosBeforeFeat':
macroapi.c:25301:15: warning: variable 'regulator' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'PerformAutofixInSeqEntry':
macroapi.c:28058:8: warning: unused variable 'num_created' [-Wunused-variable]
macroapi.c: In function 'AddFileDescriptors':
macroapi.c:28453:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
macroapi.c: In function 'PreprocessAddDescriptorListMacro':
macroapi.c:30069:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
macroapi.c: In function 'SummarizeRemoveOutsideAction':
macroapi.c:30940:11: warning: unused variable 'case_insensitive' [-Wunused-variable]
macroapi.c: In function 'GetObjectTableForTabTable':
macroapi.c:35366:63: warning: variable 'last' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'CheckObjTableForExistingText':
macroapi.c:35930:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
macroapi.c: In function 'FixSuspectProductNamesInEntrezGene':
macroapi.c:38178:18: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
macroapi.c: At top level:
macroapi.c:1189:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function]
macroapi.c:2760:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function]
macroapi.c:4543:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function]
macroapi.c:5435:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function]
macroapi.c:10224:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function]
macroapi.c:15632:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function]
macroapi.c:35102:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function]
macroapi.c:20392:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function]
macroapi.c:26150:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function]
macroapi.c: In function 'GetFeatureListForProteinBioseq':
macroapi.c:34248:10: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'ConvertToSite':
macroapi.c:24223:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'ConvertToBond':
macroapi.c:24176:7: warning: 'slp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'SetAuthorListFromString':
macroapi.c:14074:30: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'GetSourceQualFromBioSource':
macroapi.c:10861:47: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'GetMultipleSourceQualsFromBioSource':
macroapi.c:11008:45: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'RemoveSourceQualFromBioSource':
macroapi.c:11189:52: warning: 'subfield' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'CaptureRefBlockSerialNumbers':
macroapi.c:15424:26: warning: 'ppr' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'SetFieldValueForObjectEx':
macroapi.c:13405:29: warning: 'ipp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c:13352:21: note: 'ipp' was declared here
macroapi.c:13350:21: warning: 'cpp' may be used uninitialized in this function [-Wuninitialized]
macroapi.c: In function 'SetDBxrefForBioSource':
macroapi.c:22815:12: warning: 'dbtag' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salpedit.c
salpedit.c: In function 'SeqAlignInsert':
salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
salpedit.c: At top level:
salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function]
salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function]
salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function]
salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function]
salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function]
salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function]
salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function]
salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function]
salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function]
salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function]
salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function]
salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function]
salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function]
salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function]
salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function]
salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function]
salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function]
salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function]
salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function]
salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salpstat.c
salpstat.c: In function 'DenseSegStats':
salpstat.c:310:3: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
salpstat.c: In function 'SeqAlignScoreFix':
salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wuninitialized]
salpstat.c: In function 'DenseSegStats':
salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wuninitialized]
salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wuninitialized]
salpstat.c: In function 'SeqAlignWindowScoreFN':
salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wuninitialized]
salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wuninitialized]
salpstat.c: In function 'SeqAlignWindowScore':
salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salpacc.c
salpacc.c: In function 'SeqAlignStrand':
salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable]
salpacc.c: In function 'SeqAlignStop':
salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wuninitialized]
salpacc.c:495:17: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
salpacc.c: In function 'SeqAlignMolType':
salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salprop.c
salprop.c: In function 'CopySeqLocFromSeqAlign':
salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
salprop.c: In function 'FeatListToProp':
salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable]
salprop.c: At top level:
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salprop.c: In function 'ApplyNewSeqFeat':
salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
salprop.c:514:17: note: 'stop' was declared here
salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wuninitialized]
salprop.c:674:17: note: 'sfp' was declared here
salprop.c:734:23: warning: 'ppp.p5' may be used uninitialized in this function [-Wuninitialized]
salprop.c:679:17: note: 'ppp.p5' was declared here
salprop.c:737:29: warning: 'ppp.p3' may be used uninitialized in this function [-Wuninitialized]
salprop.c:679:17: note: 'ppp.p3' was declared here
salprop.c:861:33: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
salprop.c: In function 'MergeFunc':
salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wuninitialized]
salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salsap.c
salsap.c: In function 'DenseDiagToDenseSegFunc':
salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable]
salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable]
salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable]
salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable]
salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
salsap.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function]
salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function]
salsap.c: In function 'CleanStrandsSeqAlign':
salsap.c:1605:32: warning: 'dim' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1605:32: warning: 'startp' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wuninitialized]
salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
salsap.c: In function 'LocalAlignToSeqAnnotDimn':
salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wuninitialized]
salsap.c: In function 'multseqalign_from_pairseqalign':
salsap.c:4498:22: warning: 'strandp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salstruc.c
salstruc.c: In function 'data_collect_arrange':
salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable]
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable]
salstruc.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salstruc.c: In function 'next_notemptyline':
salstruc.c:375:19: warning: 'str' may be used uninitialized in this function [-Wuninitialized]
salstruc.c: In function 'data_collect_arrange':
salstruc.c:920:20: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
salstruc.c:872:19: note: 'entityID' was declared here
salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
salstruc.c:1005:17: note: 'entityID' was declared here
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salutil.c
salutil.c: In function 'ReadBufferFromSap':
salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable]
salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'IS_protSeqLoc':
salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'ReplaceSeqIdWithSeqId':
salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'del_ssp_fromid':
salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable]
salutil.c: In function 'checkCDSselect_forprotein':
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
salutil.c: In function 'NoMoreSegGapForOneAlignment':
salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration]
salutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salutil.c: In function 'del_ssp_fromid':
salutil.c:1750:30: warning: 'ssp' may be used uninitialized in this function [-Wuninitialized]
salutil.c: In function 'sesp_to_slp':
salutil.c:1974:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF udvseq.c
udvseq.c: In function 'UDV_EncodeIdxFeat':
udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
udvseq.c: In function 'UDV_BigEncodeIdxFeat':
udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blocks.c
blocks.c: In function 'IndexBlocks':
blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
blocks.c: In function 'IndexNewBlocks':
blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
blocks.c: In function 'GetBlockOrientation':
blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wuninitialized]
blocks.c: In function 'SAMergeBlocks':
blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1509:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wuninitialized]
blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wuninitialized]
blocks.c: In function 'SASplitBlock':
blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:309:4: warning: missing braces around initializer [-Wmissing-braces]
pgppop.c:309:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
pgppop.c: In function 'DDV_WWW_get_CDS_minus':
pgppop.c:578:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
pgppop.c:576:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
pgppop.c: In function 'DDV_WWW_get_CDS_plus':
pgppop.c:700:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
pgppop.c: In function 'GetClrFromClrGlobal':
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
pgppop.c: In function 'DDV_DisplayTopScale':
pgppop.c:1549:7: warning: unused variable 'szBlank' [-Wunused-variable]
pgppop.c: In function 'DDV_GetBLASTCompLine_1':
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
pgppop.c: In function 'DDV_DisplayDefaultAlign':
pgppop.c:3417:13: warning: unused variable 'sabp' [-Wunused-variable]
pgppop.c: In function 'DDV_ShowSeqAlign':
pgppop.c:3760:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable]
pgppop.c:3758:10: warning: unused variable 'szPopSetName' [-Wunused-variable]
pgppop.c: In function 'DDV_PrintPopSetSummary':
pgppop.c:3931:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable]
pgppop.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
pgppop.c:563:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function]
pgppop.c:2090:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function]
pgppop.c:2865:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function]
pgppop.c:2912:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function]
pgppop.c: In function 'DDV_PopDisplay2':
pgppop.c:1246:23: warning: 'pgp2' may be used uninitialized in this function [-Wuninitialized]
pgppop.c:1253:14: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
pgppop.c: In function 'DDV_Print_Sequence':
pgppop.c:1343:38: warning: 'idx' may be used uninitialized in this function [-Wuninitialized]
pgppop.c:1308:9: note: 'idx' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF samutil.c
samutil.c: In function 'DDE_FreeStack':
samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_Add':
samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point]
samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_Prev':
samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_Next':
samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
samutil.c: In function 'DDE_ShowRow':
samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_AddGapToEndOfAllRows':
samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_RightAddNode':
samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_LeftMergeAndAddNodeList':
samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_RightMergeAndAddNodeList':
samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_ShiftRightBoundaryLeft1':
samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_CreateArraysForDenseSeg':
samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable]
samutil.c: In function 'DDE_GetLastVNP':
samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_GetNumResidues':
samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_RemoveGapFromEndOfAllRows':
samutil.c:3287:15: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c:3272:15: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_AddAGap':
samutil.c:2659:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c:3375:15: note: 'last_vnp' was declared here
samutil.c: In function 'DDE_AddGapToEndOfAllRows':
samutil.c:3356:9: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_ShiftLeftList':
samutil.c:4161:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_RemoveGap':
samutil.c:3092:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_ShiftRowLeft1':
samutil.c:2563:13: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_ShiftRowRight1':
samutil.c:2594:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_LastColumnIsAligned':
samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c: In function 'DDE_ShiftRightBoundaryLeft1':
samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c:3375:15: note: 'last_vnp' was declared here
samutil.c: In function 'DDE_ShiftRightBoundaryRight1':
samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wuninitialized]
samutil.c:3375:15: note: 'last_vnp' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
ddvcolor.c: In function 'DDV_GetColor':
ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable]
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF viewmgr.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces]
ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1':
ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2':
ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2':
ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable]
ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable]
ddvcreate.c: In function 'DDV_DisplayNewBLAST':
ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable]
ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4':
ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function]
ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function]
ddvcreate.c: In function 'UAMgrIntUAMsg':
ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:73: note: 'stop_middle' was declared here
ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:60: note: 'start_middle' was declared here
ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here
ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here
ddvcreate.c: In function 'DDV_PopulateDisplayForDisc':
ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c: In function 'UABuildDescriptor2':
ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c: In function 'DDV_DumpSAPInAFile':
ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized]
ddvcreate.c: In function 'DDV_ReadSeqBin':
ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF jsavlt.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF needleman.c
needleman.c: In function 'NeedlemanWunschQuadraticByLoc':
needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable]
needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable]
needleman.c: In function 'FetchSequenceByLoc':
needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF txalign.c
txalign.c: In function 'addLinkoutForDefline':
txalign.c:706:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'addLinkoutForBioseq':
txalign.c:774:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'load_align_sum_for_StdSeg':
txalign.c:2748:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
txalign.c: In function 'ShowAlignNodeText2Ex':
txalign.c:3548:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'Tx_PrintDefLine':
txalign.c:4597:7: warning: unused variable 'seqid_length' [-Wunused-variable]
txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath':
txalign.c:5012:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
txalign.c:5016:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
txalign.c:4718:10: warning: unused variable 'ColumnDistance' [-Wunused-variable]
txalign.c:4710:43: warning: unused variable 'sip_list' [-Wunused-variable]
txalign.c:4706:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'FormatScoreFromSeqAlignEx':
txalign.c:5335:25: warning: unused variable 't_adj' [-Wunused-variable]
txalign.c:5334:29: warning: unused variable 'last_t_to' [-Wunused-variable]
txalign.c: In function 'FSFPrintOneDefline':
txalign.c:5443:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'FormatScoreFunc':
txalign.c:5660:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'OOFShowSingleAlignment':
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
txalign.c:6093:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable]
txalign.c: In function 'OOFDisplayTraceBack1':
txalign.c:6581:33: warning: unused variable 'st' [-Wunused-variable]
txalign.c:6581:9: warning: unused variable 'tmp' [-Wunused-variable]
txalign.c: In function 'OOFDisplayTraceBack2':
txalign.c:6655:33: warning: unused variable 'st' [-Wunused-variable]
txalign.c: In function 'FDGetTaxNamesFromBioseq':
txalign.c:6757:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable]
txalign.c: At top level:
txalign.c:630:16: warning: 'getNameInitials' defined but not used [-Wunused-function]
txalign.c:828:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function]
txalign.c:2338:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function]
txalign.c:3433:1: warning: 'get_seq_id' defined but not used [-Wunused-function]
txalign.c: In function 'DrawTextToBuffer':
txalign.c:1761:15: warning: 'HTML_buffer' may be used uninitialized in this function [-Wuninitialized]
txalign.c: In function 'CreateMaskByteStore':
txalign.c:940:4: warning: 'mol' may be used uninitialized in this function [-Wuninitialized]
txalign.c:988:8: note: 'mol' was declared here
txalign.c: In function 'OOFShowSingleAlignment.isra.6':
txalign.c:6048:5: warning: 'dna_line_start' may be used uninitialized in this function [-Wuninitialized]
txalign.c:6089:32: note: 'dna_line_start' was declared here
txalign.c:6048:5: warning: 'pro_line_start' may be used uninitialized in this function [-Wuninitialized]
txalign.c:6089:48: note: 'pro_line_start' was declared here
txalign.c: In function 'find_score_in_align':
txalign.c:2598:33: warning: 'smtp' may be used uninitialized in this function [-Wuninitialized]
txalign.c:2498:20: note: 'smtp' was declared here
txalign.c:2462:11: warning: 't_spp' may be used uninitialized in this function [-Wuninitialized]
txalign.c:2394:23: note: 't_spp' was declared here
txalign.c:2459:14: warning: 'm_spp' may be used uninitialized in this function [-Wuninitialized]
txalign.c:2394:16: note: 'm_spp' was declared here
txalign.c: In function 'ShowAlignNodeText2Ex.isra.7':
txalign.c:2284:11: warning: 'm_len' may be used uninitialized in this function [-Wuninitialized]
txalign.c:3543:10: note: 'm_len' was declared here
txalign.c: In function 'ShowTextAlignFromAnnot3':
txalign.c:1244:13: warning: 'retval' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF fdlobj.c
fdlobj.c: In function 'BlastDefLineSetAsnRead':
fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
fdlobj.c: In function 'BlastDefLineAsnRead':
fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA':
alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value]
alignmgr2.c: In function 'AlnMgr2CopySeg':
alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA':
alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c: In function 'AlnMgr2SetUnaln':
alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable]
alignmgr2.c: In function 'AlnMgr2PrintSeqAlign':
alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable]
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable]
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value]
alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign':
alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable]
alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable]
alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function]
alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function]
alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function]
alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function]
alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc':
alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2IndexLite':
alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6099:27: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength':
alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6165:19: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA':
alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA':
alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetAlnLength':
alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6757:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5757:84: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:5808:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli':
alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks':
alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthBlockRange':
alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow':
alignmgr2.c:6909:40: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNextLengthBit':
alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange':
alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7169:9: warning: 'aligncoords' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign':
alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq':
alignmgr2.c:7695:18: warning: 'saip' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2GetSubAlign':
alignmgr2.c:8248:34: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wuninitialized]
alignmgr2.c: In function 'AlnMgr2FillInUnaligned':
alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF alnread.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function 'DoesSeqStringMatchBsp':
acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:134:12: warning: 's_IsGapChar' defined but not used [-Wunused-function]
aceread.c:247:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function]
aceread.c:276:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function]
aceread.c:3308:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function]
aceread.c: In function 's_ReadContig':
aceread.c:1477:38: warning: 'linestring' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cdentrez.c
cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function]
cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function]
cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function]
cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable]
cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function]
cdentrez.c: In function 'CdEntrezMergeTerm':
cdentrez.c:2665:27: warning: 'total' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdLinkUidList':
cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdTermListByTerm':
cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdEntrezFindTerm':
cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c: In function 'CdEntTLAddTerm':
cdentrez.c:1895:33: warning: 'total' may be used uninitialized in this function [-Wuninitialized]
cdentrez.c:1787:13: note: 'total' was declared here
cdentrez.c: In function 'CdEntMedlineEntryListGet':
cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cdromlib.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces]
cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces]
cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces]
cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces]
cdnewlib.c: In function 'cd3_CdDocAsnOpen':
cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable]
cdnewlib.c: In function 'CdDevice_Init':
cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable]
cdnewlib.c: At top level:
cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function]
cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function]
cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function]
cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function]
cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable]
cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable]
cdnewlib.c: In function 'UnixFileGets':
cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c: In function 'trmncmp':
cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c: In function 'UidIndex_Lookup':
cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:1986:30: warning: 'mid' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c: In function 'TrmIndex_Lookup':
cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:2166:12: warning: 'd' may be used uninitialized in this function [-Wuninitialized]
cdnewlib.c:2166:24: warning: 'mid' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF casn.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cdconfig.c
cdconfig.c: In function 'ChangeMedia':
cdconfig.c:941:29: warning: statement with no effect [-Wunused-value]
cdconfig.c:960:17: warning: statement with no effect [-Wunused-value]
cdconfig.c: At top level:
cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function]
cdconfig.c: In function 'EntrezInfoMerge':
cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objentr.c
objentr.c: In function 'DocSumAsnRead':
objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable]
objentr.c: At top level:
objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function]
objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function]
objentr.c: In function 'EntrezInfoAsnRead':
objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wuninitialized]
objentr.c:241:17: note: 'div' was declared here
objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wuninitialized]
objentr.c:240:18: note: 'link' was declared here
objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wuninitialized]
objentr.c:239:19: note: 'fld' was declared here
objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wuninitialized]
objentr.c:238:18: note: 'tinf' was declared here
objentr.c:856:16: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
objentr.c:824:7: note: 'i' was declared here
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibbutns.c
vibbutns.c: In function 'Nlm_LoadButtonData':
vibbutns.c:117:5: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_GetButtonData':
vibbutns.c:133:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonDefault':
vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_NewButton.isra.5':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibextra.c
vibextra.c: In function 'Nlm_RGB2HSL.constprop.2':
vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibfiles.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibforms.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibgroup.c
vibgroup.c: In function 'Nlm_LoadGroupData':
vibgroup.c:142:5: warning: statement with no effect [-Wunused-value]
vibgroup.c: In function 'Nlm_GetGroupData':
vibgroup.c:159:7: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF viblists.c
viblists.c: In function 'Nlm_LoadListData':
viblists.c:220:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListData':
viblists.c:233:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_GetListData':
viblists.c:250:7: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibmenus.c
vibmenus.c: In function 'Nlm_LoadMenuData':
vibmenus.c:193:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuData':
vibmenus.c:210:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadItemData':
vibmenus.c:230:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetItemData':
vibmenus.c:243:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetItemData':
vibmenus.c:261:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadChoiceData':
vibmenus.c:283:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetChoiceData':
vibmenus.c:296:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetChoiceData':
vibmenus.c:313:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadMenuBarData':
vibmenus.c:331:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuBarData':
vibmenus.c:363:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
vibprmpt.c: In function 'Nlm_LoadPromptData':
vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_GetPromptData':
vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_NewPrompt':
vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibsbars.c
vibsbars.c: In function 'Nlm_SetBarData':
vibsbars.c:191:3: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_GetBarData':
vibsbars.c:208:7: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_LoadBarData':
vibsbars.c:429:3: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibslate.c
vibslate.c: In function 'Nlm_LoadSlateData':
vibslate.c:247:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetSlateData':
vibslate.c:260:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetSlateData':
vibslate.c:277:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadPanelData':
vibslate.c:305:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelData':
vibslate.c:317:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelData':
vibslate.c:329:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadDisplayData':
vibslate.c:351:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetDisplayData':
vibslate.c:364:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetDisplayData':
vibslate.c:381:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelExtra':
vibslate.c:407:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelExtra':
vibslate.c:430:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateVertScrollAction':
vibslate.c:1003:11: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat]
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_GetPanelOffset':
vibslate.c:1624:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat]
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_RegisterRow':
vibslate.c:3400:9: warning: statement with no effect [-Wunused-value]
vibslate.c:3410:13: warning: statement with no effect [-Wunused-value]
vibslate.c:3426:7: warning: statement with no effect [-Wunused-value]
vibslate.c:3454:7: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibtexts.c
vibtexts.c: In function 'Nlm_LoadTextData':
vibtexts.c:154:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetTextData':
vibtexts.c:167:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetTextData':
vibtexts.c:184:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetPassword':
vibtexts.c:312:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPassword':
vibtexts.c:324:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPasswordLength':
vibtexts.c:333:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_NewDialogText':
vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewPasswordText':
vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewHiddenText':
vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialText':
vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewScrollText':
vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewDialogTextWithFont':
vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialTextWithFont':
vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibutils.c
vibutils.c: In function 'Nlm_SetString':
vibutils.c:506:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetString':
vibutils.c:526:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LinkIn':
vibutils.c:2385:5: warning: statement with no effect [-Wunused-value]
vibutils.c:2389:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2392:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2401:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2404:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2409:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2416:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadGraphicData':
vibutils.c:2462:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadBoxData':
vibutils.c:2492:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_RemoveLink':
vibutils.c:2578:11: warning: statement with no effect [-Wunused-value]
vibutils.c:2586:3: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetGraphicData':
vibutils.c:2922:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetGraphicData':
vibutils.c:2939:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetBoxData':
vibutils.c:2954:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetBoxData':
vibutils.c:2971:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetExtraData':
vibutils.c:2996:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetExtraData':
vibutils.c:3018:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibwndws.c
vibwndws.c: In function 'Nlm_LoadWindowData':
vibwndws.c:411:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetWindowData':
vibwndws.c:424:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_GetWindowData':
vibwndws.c:441:7: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
ncbidraw.c: In function 'Nlm_SetFontData':
ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontData':
ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_FindFont':
ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_ReuseFont':
ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontSpec':
ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_AssignPrinterFont':
ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF drawing.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF picture.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF viewer.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF document.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF table.c
table.c: In function 'SetCellRec':
table.c:136:9: warning: statement with no effect [-Wunused-value]
table.c:138:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetCellRec':
table.c:175:9: warning: statement with no effect [-Wunused-value]
table.c:177:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetColRec':
table.c:231:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'DrawTable':
table.c:314:9: warning: statement with no effect [-Wunused-value]
table.c:317:5: warning: statement with no effect [-Wunused-value]
table.c:318:5: warning: statement with no effect [-Wunused-value]
table.c:319:5: warning: statement with no effect [-Wunused-value]
table.c:334:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordColumn':
table.c:380:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordSegment':
table.c:428:7: warning: statement with no effect [-Wunused-value]
table.c:440:9: warning: statement with no effect [-Wunused-value]
table.c:442:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'CopyToHandle':
table.c:510:7: warning: statement with no effect [-Wunused-value]
table.c:518:7: warning: statement with no effect [-Wunused-value]
table.c:527:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'AppendTableText':
table.c:632:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetTableText':
table.c:710:13: warning: statement with no effect [-Wunused-value]
table.c:718:11: warning: statement with no effect [-Wunused-value]
table.c:727:9: warning: statement with no effect [-Wunused-value]
table.c:743:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'TableTextLength':
table.c:783:13: warning: statement with no effect [-Wunused-value]
table.c:791:11: warning: statement with no effect [-Wunused-value]
table.c:800:9: warning: statement with no effect [-Wunused-value]
table.c: In function 'ResetTable':
table.c:1090:5: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF palette.c
palette.c: In function 'DrawPalette':
palette.c:116:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'AppendPalette':
palette.c:161:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'SetPaletteValue':
palette.c:216:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'GetPaletteValue':
palette.c:240:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'PaletteClick':
palette.c:306:7: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF diagnost.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF image.c
image.c: In function 'Nlm_AllocateImage':
image.c:207:28: warning: statement with no effect [-Wunused-value]
image.c:274:3: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_DeleteImage':
image.c:691:9: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_UnlockPixMapImage':
image.c:804:7: warning: statement with no effect [-Wunused-value]
image.c: In function 'ShiftXMask':
image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pictur3d.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prim3d1.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prim3d2.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prim3d3.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prim3d4.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prim3d5.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF viewer3d.c
viewer3d.c: In function 'DrawViewer3D':
viewer3d.c:521:7: warning: statement with no effect [-Wunused-value]
viewer3d.c: In function 'Nlm_RedrawPrim3D':
viewer3d.c:995:3: warning: statement with no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vibmouse.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF imagelst.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF treeview.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable]
shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable]
shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable]
shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable]
shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable]
shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable]
shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable]
shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable]
shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable]
shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable]
shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable]
shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable]
shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable]
shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable]
shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable]
shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable]
shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable]
shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable]
shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable]
shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable]
shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable]
shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable]
shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable]
shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable]
shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable]
shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable]
shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable]
shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable]
shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable]
shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable]
shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
vibbutns.c: In function 'Nlm_LoadButtonData':
vibbutns.c:117:5: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_GetButtonData':
vibbutns.c:133:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
vibbutns.c: In function 'Nlm_SetButtonDefault':
vibbutns.c:1416:7: warning: statement with no effect [-Wunused-value]
vibbutns.c: In function 'Nlm_NewButton.isra.5':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wuninitialized]
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
vibextra.c: In function 'Nlm_RGB2HSL.constprop.2':
vibextra.c:1216:7: warning: 'min' may be used uninitialized in this function [-Wuninitialized]
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
vibgroup.c: In function 'Nlm_LoadGroupData':
vibgroup.c:142:5: warning: statement with no effect [-Wunused-value]
vibgroup.c: In function 'Nlm_GetGroupData':
vibgroup.c:159:7: warning: statement with no effect [-Wunused-value]
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
viblists.c: In function 'Nlm_LoadListData':
viblists.c:220:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListData':
viblists.c:233:5: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_GetListData':
viblists.c:250:7: warning: statement with no effect [-Wunused-value]
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
vibmenus.c: In function 'Nlm_LoadMenuData':
vibmenus.c:193:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuData':
vibmenus.c:210:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadItemData':
vibmenus.c:230:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetItemData':
vibmenus.c:243:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetItemData':
vibmenus.c:261:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadChoiceData':
vibmenus.c:283:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_SetChoiceData':
vibmenus.c:296:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetChoiceData':
vibmenus.c:313:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_LoadMenuBarData':
vibmenus.c:331:5: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_GetMenuBarData':
vibmenus.c:363:7: warning: statement with no effect [-Wunused-value]
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
vibprmpt.c: In function 'Nlm_LoadPromptData':
vibprmpt.c:129:5: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_GetPromptData':
vibprmpt.c:145:7: warning: statement with no effect [-Wunused-value]
vibprmpt.c: In function 'Nlm_NewPrompt':
vibprmpt.c:663:5: warning: statement with no effect [-Wunused-value]
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
vibsbars.c: In function 'Nlm_SetBarData':
vibsbars.c:191:3: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_GetBarData':
vibsbars.c:208:7: warning: statement with no effect [-Wunused-value]
vibsbars.c: In function 'Nlm_LoadBarData':
vibsbars.c:429:3: warning: statement with no effect [-Wunused-value]
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
vibslate.c: In function 'Nlm_LoadSlateData':
vibslate.c:247:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetSlateData':
vibslate.c:260:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetSlateData':
vibslate.c:277:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadPanelData':
vibslate.c:305:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelData':
vibslate.c:317:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelData':
vibslate.c:329:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_LoadDisplayData':
vibslate.c:351:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetDisplayData':
vibslate.c:364:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetDisplayData':
vibslate.c:381:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SetPanelExtra':
vibslate.c:407:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_GetPanelExtra':
vibslate.c:430:5: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateVertScrollAction':
vibslate.c:1003:11: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat]
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_GetPanelOffset':
vibslate.c:1624:7: warning: statement with no effect [-Wunused-value]
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat]
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat]
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat]
vibslate.c: In function 'Nlm_Set3DColorMap':
vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable]
vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
vibslate.c: In function 'Nlm_RegisterRow':
vibslate.c:3400:9: warning: statement with no effect [-Wunused-value]
vibslate.c:3410:13: warning: statement with no effect [-Wunused-value]
vibslate.c:3426:7: warning: statement with no effect [-Wunused-value]
vibslate.c:3454:7: warning: statement with no effect [-Wunused-value]
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
vibtexts.c: In function 'Nlm_LoadTextData':
vibtexts.c:154:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetTextData':
vibtexts.c:167:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetTextData':
vibtexts.c:184:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_SetPassword':
vibtexts.c:312:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPassword':
vibtexts.c:324:7: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_GetPasswordLength':
vibtexts.c:333:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
vibtexts.c: In function 'Nlm_NewDialogText':
vibtexts.c:3229:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewPasswordText':
vibtexts.c:3338:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewHiddenText':
vibtexts.c:3456:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialText':
vibtexts.c:3582:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewScrollText':
vibtexts.c:3756:5: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewDialogTextWithFont':
vibtexts.c:4516:3: warning: statement with no effect [-Wunused-value]
vibtexts.c: In function 'Nlm_NewSpecialTextWithFont':
vibtexts.c:4626:3: warning: statement with no effect [-Wunused-value]
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
vibutils.c: In function 'Nlm_SetString':
vibutils.c:506:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetString':
vibutils.c:526:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LinkIn':
vibutils.c:2385:5: warning: statement with no effect [-Wunused-value]
vibutils.c:2389:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2392:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2401:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2404:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2409:7: warning: statement with no effect [-Wunused-value]
vibutils.c:2416:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadGraphicData':
vibutils.c:2462:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_LoadBoxData':
vibutils.c:2492:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_RemoveLink':
vibutils.c:2578:11: warning: statement with no effect [-Wunused-value]
vibutils.c:2586:3: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetGraphicData':
vibutils.c:2922:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetGraphicData':
vibutils.c:2939:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetBoxData':
vibutils.c:2954:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetBoxData':
vibutils.c:2971:7: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_SetExtraData':
vibutils.c:2996:5: warning: statement with no effect [-Wunused-value]
vibutils.c: In function 'Nlm_GetExtraData':
vibutils.c:3018:5: warning: statement with no effect [-Wunused-value]
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
vibwndws.c: In function 'Nlm_LoadWindowData':
vibwndws.c:411:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetWindowData':
vibwndws.c:424:5: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_GetWindowData':
vibwndws.c:441:7: warning: statement with no effect [-Wunused-value]
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
vibwndws.c: At top level:
vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function]
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
ncbidraw.c: In function 'Nlm_SetFontData':
ncbidraw.c:489:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontData':
ncbidraw.c:501:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_FindFont':
ncbidraw.c:2234:7: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_ReuseFont':
ncbidraw.c:2252:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_GetFontSpec':
ncbidraw.c:2860:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c:2867:5: warning: statement with no effect [-Wunused-value]
ncbidraw.c: In function 'Nlm_AssignPrinterFont':
ncbidraw.c:2928:5: warning: statement with no effect [-Wunused-value]
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
table.c: In function 'SetCellRec':
table.c:136:9: warning: statement with no effect [-Wunused-value]
table.c:138:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetCellRec':
table.c:175:9: warning: statement with no effect [-Wunused-value]
table.c:177:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetColRec':
table.c:231:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'DrawTable':
table.c:314:9: warning: statement with no effect [-Wunused-value]
table.c:317:5: warning: statement with no effect [-Wunused-value]
table.c:318:5: warning: statement with no effect [-Wunused-value]
table.c:319:5: warning: statement with no effect [-Wunused-value]
table.c:334:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordColumn':
table.c:380:5: warning: statement with no effect [-Wunused-value]
table.c: In function 'RecordSegment':
table.c:428:7: warning: statement with no effect [-Wunused-value]
table.c:440:9: warning: statement with no effect [-Wunused-value]
table.c:442:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'CopyToHandle':
table.c:510:7: warning: statement with no effect [-Wunused-value]
table.c:518:7: warning: statement with no effect [-Wunused-value]
table.c:527:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'AppendTableText':
table.c:632:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'GetTableText':
table.c:710:13: warning: statement with no effect [-Wunused-value]
table.c:718:11: warning: statement with no effect [-Wunused-value]
table.c:727:9: warning: statement with no effect [-Wunused-value]
table.c:743:7: warning: statement with no effect [-Wunused-value]
table.c: In function 'TableTextLength':
table.c:783:13: warning: statement with no effect [-Wunused-value]
table.c:791:11: warning: statement with no effect [-Wunused-value]
table.c:800:9: warning: statement with no effect [-Wunused-value]
table.c: In function 'ResetTable':
table.c:1090:5: warning: statement with no effect [-Wunused-value]
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
palette.c: In function 'DrawPalette':
palette.c:116:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'AppendPalette':
palette.c:161:5: warning: statement with no effect [-Wunused-value]
palette.c: In function 'SetPaletteValue':
palette.c:216:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'GetPaletteValue':
palette.c:240:7: warning: statement with no effect [-Wunused-value]
palette.c: In function 'PaletteClick':
palette.c:306:7: warning: statement with no effect [-Wunused-value]
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
image.c: In function 'Nlm_AllocateImage':
image.c:207:28: warning: statement with no effect [-Wunused-value]
image.c:274:3: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_DeleteImage':
image.c:691:9: warning: statement with no effect [-Wunused-value]
image.c: In function 'Nlm_UnlockPixMapImage':
image.c:804:7: warning: statement with no effect [-Wunused-value]
image.c: In function 'ShiftXMask':
image.c:840:9: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
viewer3d.c: In function 'DrawViewer3D':
viewer3d.c:521:7: warning: statement with no effect [-Wunused-value]
viewer3d.c: In function 'Nlm_RedrawPrim3D':
viewer3d.c:995:3: warning: statement with no effect [-Wunused-value]
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function 'OGL_AddCylinder3D':
shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable]
shim3d.c: In function 'OGL_AddText3D':
shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable]
shim3d.c: In function 'OGL_Zoom_DragMA':
shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable]
shim3d.c: In function 'OGL_Hit':
shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default]
shim3d.c: In function 'write_row_callback':
shim3d.c:2911:48: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:2911:48: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
shim3d.c: In function 'SetOGLFont':
shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:2322:28: warning: 'list' may be used uninitialized in this function [-Wuninitialized]
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:40: warning: 'pCz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:34: warning: 'pCy' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:28: warning: 'pCx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:22: warning: 'pNz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:16: warning: 'pNy' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3461:10: warning: 'pNx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3575:16: warning: 'Nx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wuninitialized]
shim3d.c:3434:6: warning: 'offset' may be used uninitialized in this function [-Wuninitialized]
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF accentr.c
accentr.c: In function 'EntrezBiostrucGet':
accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF accutils.c
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF drawseq.c
drawseq.c: In function 'AddFlatNodeSymbol':
drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable]
drawseq.c: In function 'AddAlignBlocks':
drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'AddAlignFeature':
drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable]
drawseq.c: In function 'AddAlignmentMismatch':
drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawRestrictionMap':
drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable]
drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawFeatures':
drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawOneSeqLoc':
drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable]
drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'Label_GData':
drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'DrawEquivAlign':
drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable]
drawseq.c: In function 'load_align_label_rectangle':
drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable]
drawseq.c: In function 'PicForAlignNode':
drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable]
drawseq.c: At top level:
drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function]
drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF fea2seg.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF fstyle.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF smdlg1.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF smdlg2.c
smdlg2.c: In function 'Nlm_CreateDlgGroup':
smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF smdlg3.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF smtools.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF styleman.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF stylemui.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF glbpic.c
glbpic.c: In function 'label_linear_mark':
glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable]
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable]
glbpic.c: At top level:
glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function]
glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function]
glbpic.c: In function 'get_circle_label_align':
glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wuninitialized]
glbpic.c: In function 'label_circle_mark':
glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2483:11: warning: 'first_left' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:2473:10: warning: 'first_top' may be used uninitialized in this function [-Wuninitialized]
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wuninitialized]
glbpic.c: In function 'Draw_Global':
glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wuninitialized]
glbpic.c:1943:8: note: 'seglen' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF layout.c
layout.c: In function 'LayoutNodeFlat':
layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
layout.c: In function 'layout_uncompressed_group':
layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable]
layout.c: In function 'LayoutFeatNode':
layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable]
layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable]
layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable]
layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable]
layout.c: In function 'LayoutAlignNode':
layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable]
layout.c: At top level:
layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function]
layout.c: In function 'layout_uncompressed_group':
layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wuninitialized]
layout.c: In function 'GroupFeatNode':
layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wuninitialized]
layout.c:594:35: note: 'prev' was declared here
layout.c: In function 'OrderCdsmRNA':
layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wuninitialized]
layout.c:940:15: note: 'm_missed' was declared here
layout.c: In function 'LayoutFeatNode':
layout.c:1447:7: warning: 'p_right' may be used uninitialized in this function [-Wuninitialized]
layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wuninitialized]
layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wuninitialized]
layout.c: In function 'LayoutAlignNode':
layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wuninitialized]
layout.c:2317:27: warning: 'cur_line' may be used uninitialized in this function [-Wuninitialized]
layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF saldist.c
saldist.c: In function 'copy_string':
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
saldist.c: In function 'nss_ref_complength':
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
saldist.c: In function 'nss_pw_complength':
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
saldist.c: In function 'nss_gp_complength':
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
saldist.c: In function 'SortbySimProc':
saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable]
saldist.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable]
saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function]
saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function]
saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function]
saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function]
saldist.c: In function 'writematrixhalf.constprop.5':
saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
saldist.c: In function 'PwDistProc':
saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wuninitialized]
saldist.c:1104:19: note: 'vnp' was declared here
saldist.c: In function 'SortbyLenItem':
saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wuninitialized]
saldist.c:2172:28: note: 'mink' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF saled.c
saled.c: In function 'ReadAlignmentForSeqEntry':
saled.c:3325:21: warning: unused variable 'dirty' [-Wunused-variable]
saled.c:3321:21: warning: unused variable 'salp' [-Wunused-variable]
saled.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salfiles.c
salfiles.c: In function 'NewFastaRead':
salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable]
salfiles.c: In function 'ReadAlignmentToStrings':
salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable]
salfiles.c: In function 'MacawRead':
salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable]
salfiles.c: In function 'ReadLocalAlign':
salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable]
salfiles.c: In function 'ImportFromFile':
salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable]
salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable]
salfiles.c: In function 'sesp_to_pept':
salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable]
salfiles.c: In function 'SaveFeatProc':
salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salfiles.c: In function 'CCReadAnythingLoop':
salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
salfiles.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function]
salfiles.c: In function 'CCDownloadProc':
salfiles.c:2363:9: warning: 'new_sep' may be used uninitialized in this function [-Wuninitialized]
salfiles.c: In function 'NewFastaRead.constprop.14':
salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
salfiles.c: In function 'GapFastaRead':
salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wuninitialized]
salfiles.c:654:16: note: 'seqstr' was declared here
salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wuninitialized]
salfiles.c:660:16: note: 'startp' was declared here
salfiles.c: In function 'ReadLocalAlignment':
salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wuninitialized]
salfiles.c:1113:19: note: 'seqvnp' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salpanel.c
salpanel.c: In function 'go_to_next_to_draw':
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
salpanel.c: In function 'next_to_draw':
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
salpanel.c: In function 'AssociatePropagatedSubloc':
salpanel.c:3131:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
salpanel.c: In function 'FeaturePropagateForm':
salpanel.c:4670:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
salpanel.c:4665:15: warning: variable 'b' set but not used [-Wunused-but-set-variable]
salpanel.c: In function 'OkToContinueWithFeatureApply':
salpanel.c:6099:14: warning: unused variable 'num_missing' [-Wunused-variable]
salpanel.c: In function 'DoApplyFeatureToAlignment':
salpanel.c:6215:31: warning: unused variable 'found_null' [-Wunused-variable]
salpanel.c: In function 'ApplyFeatureToAlignment':
salpanel.c:6417:31: warning: variable 'b' set but not used [-Wunused-but-set-variable]
salpanel.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salpanel.c:65:14: warning: 'diamondSym' defined but not used [-Wunused-variable]
salpanel.c:68:14: warning: 'ovalSym' defined but not used [-Wunused-variable]
salpanel.c:77:14: warning: 'upTriSym' defined but not used [-Wunused-variable]
salpanel.c:80:14: warning: 'downTriSym' defined but not used [-Wunused-variable]
salpanel.c:86:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable]
salpanel.c:89:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable]
salpanel.c:98:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable]
salpanel.c:101:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable]
salpanel.c:104:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable]
salpanel.c:107:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable]
salpanel.c:110:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable]
salpanel.c:113:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable]
salpanel.c:224:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function]
salpanel.c:5055:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function]
salpanel.c: In function 'draw_feat.isra.16.part.17':
salpanel.c:2183:13: warning: 'col1' may be used uninitialized in this function [-Wuninitialized]
salpanel.c: In function 'on_draw':
salpanel.c:2599:31: warning: 'draw_diff' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salparam.c
salparam.c: In function 'mergelst':
salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'unmergelst':
salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'FormulaDialog':
salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'JK_NTPattern2Ex':
salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'DotPlotBtn':
salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'DotPlotDialog':
salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'DotPlotItem':
salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'SelectSeqFunc':
salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'HighlightSelectionFunc':
salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable]
salparam.c: In function 'PropagateFeatureProc':
salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable]
salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable]
salparam.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salparam.c: In function 'DotPlotBtn':
salparam.c:1950:25: warning: 'sep' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salsa.c
salsa.c: In function 'SelectSubsProc':
salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'SetSeqInfo':
salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable]
salsa.c: In function 'SetupAlignDataSap':
salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'get_bestpos_formerge':
salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable]
salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'CreateSeqAlignViewForm':
salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'AlgEditFunc':
salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable]
salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable]
salsa.c: In function 'OldAlignmentEditor':
salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAnnotAlignEditor':
salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditor':
salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignViewer':
salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop':
salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop2':
salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop3':
salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'LaunchAlignEditorFromDesktop4':
salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'InsertSeqProc':
salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable]
salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'SeqAlignBestHit':
salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'SeqAlignStartUpdate':
salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable]
salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable]
salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable]
salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable]
salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable]
salsa.c: In function 'CCNormalizeSeqAlignId':
salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable]
salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable]
salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable]
salsa.c: In function 'ValidateSeqAlignandACCEx':
salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
salsa.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function]
salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function]
salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function]
salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function]
salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function]
salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function]
salsa.c: In function 'ExportFASTAForUnselectedUpdates':
salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'ExportBadAlignments':
salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'SeqAlignBestHit.isra.3':
salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wuninitialized]
salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'BioseqEditMsgFunc':
salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wuninitialized]
salsa.c:890:20: note: 'anp' was declared here
salsa.c: In function 'DeleteProc':
salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
salsa.c: In function 'SkipThisWindowProc':
salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqfltr.c
seqfltr.c: In function 'FilterSeq':
seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqgraph.c
seqgraph.c: In function 'EndPointDialogToEndPointValNode':
seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized]
seqgraph.c: In function 'SeqLocGraphViewProc':
seqgraph.c:1136:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized]
seqgraph.c: In function 'MarkPrims':
seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wuninitialized]
seqgraph.c: In function 'CutOffProc':
seqgraph.c:1018:9: warning: 'eplist' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function]
seqgrphx.c: In function 'FilterMsgFunc':
seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqpcc.c
seqpcc.c: In function 'PCCProc':
seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqanal.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF aacomp.c
aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqscrl.c
seqscrl.c: In function 'SeqScrollDataFree':
seqscrl.c:46:5: warning: value computed is not used [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF valdlg.c
valdlg.c: In function 'ClickRulesDoc':
valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable]
valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable]
valdlg.c: In function 'UpdateRuleList':
valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable]
valdlg.c: In function 'SaveRuleChanges':
valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable]
valdlg.c: In function 'LaunchCommentRulesEditor':
valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vsm.c
vsm.c: In function 'VSMAboutProc':
vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSeqMgrCreateMainWindow':
vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSeqMgrPopulateMain':
vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSMGatherPictProc':
vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable]
vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable]
vsm.c: In function 'VSMAddPictureToEntity':
vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vsmfile.c
vsmfile.c: In function 'VSMGenericBinAsnOpen':
vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
vsmfile.c: In function 'VSMGenericFastaSave':
vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
vsmfile.c: In function 'VSMFastaProtSaveWithProduct':
vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
vsmfile.c: In function 'VSMSaveSetsAsFiles':
vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vsmutil.c
vsmutil.c: In function 'GetDocPosForError':
vsmutil.c:1657:18: warning: variable 'val' set but not used [-Wunused-but-set-variable]
vsmutil.c: At top level:
vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function]
vsmutil.c:1542:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function]
vsmutil.c: In function 'ContinueProc':
vsmutil.c:2157:19: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'SetVerbosityAndRepopulate':
vsmutil.c:2198:19: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'RevalidateProc':
vsmutil.c:2124:19: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'ClearValidateWindow':
vsmutil.c:613:21: warning: array subscript is above array bounds [-Warray-bounds]
vsmutil.c: In function 'CreateValidateWindowExExEx':
vsmutil.c:2521:23: warning: array subscript is above array bounds [-Warray-bounds]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF udvgraph.c
udvgraph.c: In function 'UDV_click_item':
udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable]
udvgraph.c: In function 'UDV_SendBSPSelectMsg':
udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_helixDNA':
udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'draw_logo':
udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_CDS_minus':
udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_CDS_plus':
udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
udvgraph.c: In function 'UDV_draw_panel':
udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable]
udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable]
udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable]
udvgraph.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function]
udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function]
udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function]
udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function]
udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function]
udvgraph.c: In function 'UDV_GetCurrentDispRange':
udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c: In function 'UDV_Draw_features':
udvgraph.c:3203:23: warning: 'idx6' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3203:23: warning: 'idx5' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3196:11: warning: 'idx4' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3189:23: warning: 'idx3' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3189:23: warning: 'idx2' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3182:12: warning: 'idx1' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3226:11: warning: 'stop_x2' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3226:11: warning: 'stop_x' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wuninitialized]
udvgraph.c: In function 'UDV_ClickProc':
udvgraph.c:1458:21: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF udvopen.c
udvopen.c: In function 'UDV_FileOpen':
udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable]
udvopen.c: In function 'UDV_CreateListBioseqDlg':
udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress]
udvopen.c: In function 'UDV_FOpenCancelProc':
udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized]
udvopen.c: In function 'UDV_analyze_SEP_for_open':
udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wuninitialized]
udvopen.c: In function 'UDV_FOpenAcceptProc':
udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF udvpanel.c
udvpanel.c: In function 'UDV_GotoBtnProc':
udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable]
udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
udvpanel.c: In function 'CreateMainControls':
udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
udvpanel.c: In function 'UDV_SearchFeatForKey':
udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
udvpanel.c: At top level:
udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function]
udvpanel.c: In function 'InitFeaturesListDlg':
udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
dotvibrant.c: In function 'DOT_DisplayHits':
dotvibrant.c:564:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_VscrlProc':
dotvibrant.c:918:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_HscrlProc':
dotvibrant.c:972:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_VCrossHairs':
dotvibrant.c:1402:10: warning: unused variable 'cursor_size' [-Wunused-variable]
dotvibrant.c: In function 'DOT_HCrossHairs':
dotvibrant.c:1427:9: warning: unused variable 'cursor_size' [-Wunused-variable]
dotvibrant.c: In function 'DOT_MoveCrossHairs':
dotvibrant.c:1453:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1452:10: warning: unused variable 'cursor_size' [-Wunused-variable]
dotvibrant.c: In function 'DOT_DrawXAxis':
dotvibrant.c:1532:38: warning: unused variable 'title' [-Wunused-variable]
dotvibrant.c: In function 'DOT_DrawYAxis':
dotvibrant.c:1642:38: warning: unused variable 'title' [-Wunused-variable]
dotvibrant.c:1641:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_SVDisplayDiags':
dotvibrant.c:1770:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1770:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1766:22: warning: variable 'width' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1765:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1765:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable]
dotvibrant.c:1762:28: warning: unused variable 'cutoff' [-Wunused-variable]
dotvibrant.c:1760:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_FillNewSeqBufs':
dotvibrant.c:2197:19: warning: unused variable 'alp' [-Wunused-variable]
dotvibrant.c: In function 'DOT_InitCInfo':
dotvibrant.c:2258:14: warning: unused variable 'colBuf' [-Wunused-variable]
dotvibrant.c: In function 'DOT_SVDisplaySequence':
dotvibrant.c:2379:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable]
dotvibrant.c:2367:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:2364:14: warning: unused variable 'prot_threshold' [-Wunused-variable]
dotvibrant.c:2350:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_SVClickProc':
dotvibrant.c:2807:17: warning: unused variable 'handled' [-Wunused-variable]
dotvibrant.c: In function 'DOT_ResizeFeatWindow':
dotvibrant.c:3016:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3016:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3016:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ResizeSequenceWindow':
dotvibrant.c:3098:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3098:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable]
dotvibrant.c:3095:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_HideFeatDlg':
dotvibrant.c:3745:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_SVBuildDiagViewer':
dotvibrant.c:4031:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4029:28: warning: unused variable 'str2' [-Wunused-variable]
dotvibrant.c:4029:13: warning: unused variable 'str1' [-Wunused-variable]
dotvibrant.c:4022:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4022:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_UpdateDataRects':
dotvibrant.c:4166:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4166:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_MsgFunc':
dotvibrant.c:4215:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ReleaseProc':
dotvibrant.c:4373:32: warning: unused variable 'yaxis_incr' [-Wunused-variable]
dotvibrant.c:4373:15: warning: unused variable 'xaxis_incr' [-Wunused-variable]
dotvibrant.c:4371:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable]
dotvibrant.c:4370:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_StartDOTPLOT':
dotvibrant.c:4891:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_DoZoom':
dotvibrant.c:5106:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ZoomProc':
dotvibrant.c:5204:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'AlnMgr2GetNextLine':
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
dotvibrant.c: In function 'DOT_GetAlign':
dotvibrant.c:5332:44: warning: variable 'n' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_FillAlignInfoPointer':
dotvibrant.c:5565:16: warning: unused variable 'i' [-Wunused-variable]
dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer':
dotvibrant.c:5681:16: warning: unused variable 'i' [-Wunused-variable]
dotvibrant.c:5680:16: warning: unused variable 'numsaps' [-Wunused-variable]
dotvibrant.c:5678:37: warning: unused variable 'sap_tmp' [-Wunused-variable]
dotvibrant.c: In function 'DOT_DoBlast':
dotvibrant.c:5918:23: warning: unused variable 'eval' [-Wunused-variable]
dotvibrant.c:5917:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
dotvibrant.c:5915:23: warning: unused variable 'entityID' [-Wunused-variable]
dotvibrant.c: In function 'DOT_CreateWindowDetails':
dotvibrant.c:6214:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
dotvibrant.c:6214:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
dotvibrant.c:6207:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_ResizeMainWindow':
dotvibrant.c:6273:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'DOT_FindAlignment':
dotvibrant.c:6662:29: warning: unused variable 'rb_fixed' [-Wunused-variable]
dotvibrant.c:6662:13: warning: unused variable 'lt_fixed' [-Wunused-variable]
dotvibrant.c:6661:17: warning: variable 'data' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs':
dotvibrant.c:6792:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable]
dotvibrant.c: In function 'SCP_OrganizeAlnsInSet':
dotvibrant.c:6873:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable]
dotvibrant.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
dotvibrant.c:2760:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function]
dotvibrant.c:2954:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function]
dotvibrant.c:3318:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function]
dotvibrant.c:3688:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function]
dotvibrant.c:4213:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function]
dotvibrant.c:4749:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function]
dotvibrant.c:4767:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function]
dotvibrant.c:5281:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function]
dotvibrant.c:5325:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function]
dotvibrant.c:5894:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function]
dotvibrant.c:6346:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function]
dotvibrant.c:6642:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function]
dotvibrant.c: In function 'DOT_GetNthSeqFromAlign':
dotvibrant.c:5072:11: warning: 'spp' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer':
dotvibrant.c:2611:32: warning: 'strand2' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2380:23: note: 'strand2' was declared here
dotvibrant.c:2611:32: warning: 'strand1' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2380:14: note: 'strand1' was declared here
dotvibrant.c:2583:37: warning: 'residue_names' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2378:16: note: 'residue_names' was declared here
dotvibrant.c:2611:32: warning: 's_pos' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:42: note: 's_pos' was declared here
dotvibrant.c:2611:32: warning: 'q_pos' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:35: note: 'q_pos' was declared here
dotvibrant.c:2504:11: warning: 'hit_stop' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:25: note: 'hit_stop' was declared here
dotvibrant.c:2614:32: warning: 'hit_start' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2370:14: note: 'hit_start' was declared here
dotvibrant.c:2503:16: warning: 'buf_len' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2367:21: note: 'buf_len' was declared here
dotvibrant.c:2545:18: warning: 'is_na' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2361:27: note: 'is_na' was declared here
dotvibrant.c:2503:6: warning: 's' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2357:14: note: 's' was declared here
dotvibrant.c:2626:16: warning: 'q' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:2356:14: note: 'q' was declared here
dotvibrant.c: In function 'DOT_MakeMainViewer':
dotvibrant.c:6248:10: warning: 's_stop' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:44: note: 's_stop' was declared here
dotvibrant.c:6248:10: warning: 's_start' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:35: note: 's_start' was declared here
dotvibrant.c:6248:10: warning: 'q_stop' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:27: note: 'q_stop' was declared here
dotvibrant.c:6248:10: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6209:18: note: 'q_start' was declared here
dotvibrant.c:6248:10: warning: 'sname' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6208:35: note: 'sname' was declared here
dotvibrant.c:6248:10: warning: 'qname' may be used uninitialized in this function [-Wuninitialized]
dotvibrant.c:6208:23: note: 'qname' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
dlgutil1.c: In function 'IsAuthList':
dlgutil1.c:3008:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
dlgutil1.c: In function 'TestAuthorDialog':
dlgutil1.c:3357:20: warning: unused variable 'cp' [-Wunused-variable]
dlgutil1.c: In function 'TestIntervalEditor':
dlgutil1.c:5318:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable]
dlgutil1.c:5317:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable]
dlgutil1.c:5316:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable]
dlgutil1.c: In function 'CreateStandardEditMenu':
dlgutil1.c:9189:8: warning: variable 'i' set but not used [-Wunused-but-set-variable]
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
dlgutil1.c:8061:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function]
dlgutil1.c:8378:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
dlgutil2.c: In function 'CreateImportFields':
dlgutil2.c:1401:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars':
dlgutil2.c:3532:11: warning: variable 'y' set but not used [-Wunused-but-set-variable]
dlgutil2.c:3532:8: warning: variable 'x' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'GetTableDisplayCell':
dlgutil2.c:3931:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'NewCreateInferenceDialog':
dlgutil2.c:7600:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'ClickableListOnKey':
dlgutil2.c:10202:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'GetSelectedClickableListText':
dlgutil2.c:10874:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable]
dlgutil2.c: In function 'AutomatchFeatures':
dlgutil2.c:13840:36: warning: variable 's3' set but not used [-Wunused-but-set-variable]
dlgutil2.c: At top level:
dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function]
dlgutil2.c:8577:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function]
dlgutil2.c:10039:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function]
dlgutil2.c:10059:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function]
dlgutil2.c:11993:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
e2trmlst.c: In function 'ReadAFew':
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF e2docsum.c
e2docsum.c: In function 'FormatCdsSeq':
e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'FetchSequence':
e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable]
e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'SaveDocsumProject':
e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'RetrieveGeneration':
e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable]
e2docsum.c: In function 'SetupMenus':
e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable]
e2docsum.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable]
e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function]
e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
asn2graphic.c: In function 'ParseFilterItem':
asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable]
asn2graphic.c: In function 'GeneProductsLayoutInternal':
asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable]
asn2graphic.c: In function 'ScaleSntDrawProc':
asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable]
asn2graphic.c: In function 'GphSentProc':
asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
asn2graphic.c: In function 'ProcessRows':
asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wuninitialized]
asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wuninitialized]
asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF medview.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bspview.c
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gbfview.c
gbfview.c: In function 'RelModeFailText':
gbfview.c:1004:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable]
gbfview.c: In function 'PopulateFlatFile':
gbfview.c:1289:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable]
gbfview.c: In function 'PopulateFasta':
gbfview.c:1714:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
gbfview.c:1646:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
gbfview.c: In function 'PopulateAsnOrXML':
gbfview.c:1969:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable]
gbfview.c:1968:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable]
gbfview.c: At top level:
gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function]
gbfview.c:944:13: warning: 'LookForPubs' defined but not used [-Wunused-function]
gbfview.c:1212:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function]
gbfview.c:1231:13: warning: 'LookForFarProds' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gphview.c
gphview.c: In function 'ReleaseAlignment':
gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'DrawAlignOnAllSequences':
gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'ReleaseDesktop':
gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'AutoScrollGeneName':
gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'DisplayGeneChoiceWindow':
gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable]
gphview.c: In function 'PrintGraphical':
gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable]
gphview.c: In function 'PopulateAsn2GphGraphic':
gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gphdraw.c
gphdraw.c: In function 'GraphSentProc':
gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
gphdraw.c: In function 'DrawGraphToPanel':
gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gxydraw.c
gxydraw.c: In function 'DotXYPlot':
gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wuninitialized]
gxydraw.c:182:19: note: 'xaxiscount' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqpanel.c
seqpanel.c: In function 'FillFeatureInfo':
seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'DrawFeatureCodonLines':
seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'DrawFeature':
seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'GetSeqChapterFeatureInfo':
seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel':
seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable]
seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'PrintTranslatedFrame':
seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'ExportSequenceText':
seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign]
../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr'
seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable]
seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'SeqAlnOnDrag':
seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable]
seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'ResizeSeqEdView':
seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable]
seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable]
seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx':
seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
seqpanel.c: In function 'WriteAlignmentContiguousToFile':
seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
seqpanel.c: In function 'ReverseSequenceStrandsInAlignment':
seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function]
seqpanel.c: In function 'SeqEdFindPatternDialog':
seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:3810:21: note: 'str_prot' was declared here
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c: In function 'SeqEdExportProc':
seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:4233:17: note: 'seq_pos' was declared here
seqpanel.c: In function 'onDrawSeqPanel':
seqpanel.c:1252:29: warning: 'alnbuf' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:2466:33: note: 'alnbuf' was declared here
seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wuninitialized]
seqpanel.c:2466:25: note: 'seqbuf' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ingengraph.c
ingengraph.c: In function 'Ing_BigEncodeIdxFeat':
ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage':
ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable]
ingengraph.c: In function 'Ing_AddAlignsToOverviewPage':
ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable]
ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable]
ingengraph.c: In function 'Ing_DrawOverviewPage':
ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
ingengraph.c:488:14: warning: unused variable 'Nlm_Visible' [-Wunused-variable]
ingengraph.c: In function 'Ing_PopOverviewPage':
ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable]
ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable]
ingengraph.c: In function 'Ing_PopDetailedPage':
ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable]
ingengraph.c: In function 'Ing_ExploreSegments':
ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable]
ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable]
ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable]
ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable]
ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable]
ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable]
ingengraph.c: In function 'Ing_AddGCRect':
ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable]
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function]
ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function]
ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ingenext.c
ingenext.c: In function 'Ing_KeepTheBestAlignments':
ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_HandleQBlastResults':
ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_HandleResults':
ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_AccepttRNAargsProc':
ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable]
ingenext.c: In function 'Ing_tRNAscanProc':
ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable]
ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable]
ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable]
ingenext.c: In function 'Ing_ReadtRNAConfigFile':
ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_CreateDotMatrixForm':
ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_RunSpidey':
ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable]
ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable]
ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable]
ingenext.c: In function 'Ing_ReadmRNAs_ext':
ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenext.c: In function 'Ing_DeleteInsertInGenomic':
ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable]
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable]
ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable]
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable]
ingenext.c: In function 'Ing_PrintSpideyReport':
ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_PrintBlastReport':
ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable]
ingenext.c:3850:18: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable]
ingenext.c: In function 'Ing_PopulateReport':
ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable]
ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable]
ingenext.c: In function 'Ing_ResizeReportWindow':
ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function]
ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable]
ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable]
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wuninitialized]
ingenext.c: In function 'Ing_ReportClickProc':
ingenext.c:4287:21: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized]
ingenext.c:4262:22: note: 'nmismatches' was declared here
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wuninitialized]
ingenext.c:3197:34: warning: 'mstart' may be used uninitialized in this function [-Wuninitialized]
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2681:13: warning: 'nmismatches' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ingenwin.c
ingenwin.c: In function 'Ing_PopulateDetailedPage':
ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable]
ingenwin.c: In function 'Ing_DoRange':
ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_PopulateCpG':
ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ResizeCpGWindow':
ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_PopulateMotif':
ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable]
ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ResizeMotifWindow':
ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable]
ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ShowComplexity':
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
ingenwin.c: In function 'Ing_CreateNewFeature':
ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable]
ingenwin.c: In function 'Ing_GetAlignmentIntervals':
ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable]
ingenwin.c: In function 'Ing_OldGetAlignmentIntervals':
ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable]
ingenwin.c: In function 'Ing_OldMakeLocListFromSAP':
ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable]
ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable]
ingenwin.c: In function 'Ing_OM_MsgFunc':
ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress]
ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable]
ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable]
ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable]
ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable]
ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable]
ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable]
ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable]
ingenwin.c: In function 'Ing_MoveCursor':
ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_FeatViewerClickProc':
ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable]
ingenwin.c: In function 'Ing_SequenceClickProc':
ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_ReadInBlastAsn':
ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable]
ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable]
ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable]
ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable]
ingenwin.c: In function 'Ing_ParseSeqIdFile':
ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable]
ingenwin.c: In function 'Ing_ReadInFeatureTable':
ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_AssembleGenscanInfo':
ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable]
ingenwin.c: In function 'Ing_ReadInGenscan':
ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable]
ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable]
ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable]
ingenwin.c: In function 'Ing_AssembleTabDelimited':
ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable]
ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable]
ingenwin.c: In function 'Ing_ReadInTabDelimited':
ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable]
ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable]
ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable]
ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable]
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable]
ingenwin.c: In function 'Ing_FileOpenMain':
ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable]
ingenwin.c: In function 'Ing_ResizeMainWindow':
ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_OpenFromFileORNetwork':
ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_EditFeature':
ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_MarkSeqAnnot':
ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable]
ingenwin.c: In function 'Ing_CreateMismatchedDialog':
ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain]
ingenwin.c: In function 'Ing_PropagateClickProc':
ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable]
ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable]
ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable]
ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable]
ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable]
ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable]
ingenwin.c: In function 'Ing_PrintCompProteins':
ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable]
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable]
ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable]
ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable]
ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable]
ingenwin.c: In function 'Ing_DoPropagate':
ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable]
ingenwin.c: In function 'Ing_GetFromNetwork':
ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable]
ingenwin.c: In function 'Ing_SetupMainWindow':
ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable]
ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable]
ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable]
ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable]
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function]
ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function]
ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function]
ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function]
ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function]
ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function]
ingenwin.c: In function 'Ing_ReplaceMismatchedProc':
ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:5137:17: note: 'j' was declared here
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3290:12: warning: 'strand' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:3255:17: note: 'strand' was declared here
ingenwin.c: In function 'Ing_KozakProc':
ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_SignalPeptideProc':
ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_RepeatsProc':
ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_PolyAProc':
ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c: In function 'Ing_CpGProc':
ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wuninitialized]
ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF macrodlg.c
macrodlg.c: In function 'CloseMacroEditorWindowProc':
macrodlg.c:99:11: warning: unused variable 'do_remove' [-Wunused-variable]
macrodlg.c: In function 'ExistingTextDialog':
macrodlg.c:1908:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SourceQualChoiceDialog':
macrodlg.c:3725:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable]
macrodlg.c:3725:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
macrodlg.c:3725:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
macrodlg.c:3725:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SourceConstraintDialog':
macrodlg.c:3963:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
macrodlg.c:3963:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
macrodlg.c:3963:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'CDSGeneProtQualConstraintDialog':
macrodlg.c:4277:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
macrodlg.c:4277:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
macrodlg.c:4277:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'FeatureFieldTypeFromComplexConstraintType':
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_seqid' not handled in switch [-Wswitch]
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_string' not handled in switch [-Wswitch]
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_loc' not handled in switch [-Wswitch]
macrodlg.c: In function 'TestApplyActionDialog':
macrodlg.c:12680:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'TestEditActionDialog':
macrodlg.c:12854:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'TestRemoveOutsideActionDialog':
macrodlg.c:13012:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'AddMacroActions':
macrodlg.c:19633:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'PointerToSampleDialog':
macrodlg.c:19769:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SampleDialogCopy':
macrodlg.c:19889:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable]
macrodlg.c:19889:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'SingleMacroAcceptButton':
macrodlg.c:21177:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable]
macrodlg.c:21177:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable]
macrodlg.c: In function 'LaunchMacroTemplateEditor':
macrodlg.c:22877:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable]
macrodlg.c: At top level:
macrodlg.c:9778:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function]
macrodlg.c: In function 'ApplyProductUpdateTableBtn':
macrodlg.c:26278:15: warning: 'lip' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c: In function 'RemoveSequencesActionDialog':
macrodlg.c:6490:15: warning: 'p' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c: In function 'ActionToSingleMacroActionForm':
macrodlg.c:21387:6: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c: In function 'BuildEditMacroActionWindow':
macrodlg.c:15004:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wuninitialized]
macrodlg.c:14910:47: note: 'indexer_only_group' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF biosrc.c
biosrc.c: In function 'CreateBioSourceDialog':
biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
biosrc.c: At top level:
biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function]
biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function]
biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function]
biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function]
biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cdrgn.c
cdrgn.c: In function 'ProductToSeqLocPtr':
cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable]
cdrgn.c: In function 'CreateCodeBreakAlist':
cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog':
cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable]
cdrgn.c: In function 'PopulateAAPopup':
cdrgn.c:7044:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
cdrgn.c: At top level:
cdrgn.c:2174:13: warning: 'AccessionToGi' defined but not used [-Wunused-function]
cdrgn.c:6253:14: warning: 'check_rna_type' defined but not used [-Wunused-function]
cdrgn.c:6330:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function]
cdrgn.c:6773:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function]
cdrgn.c:6792:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function]
cdrgn.c:6854:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF import.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pubdesc.c
pubdesc.c: In function 'SetPubdescImportExportItems':
pubdesc.c:2859:37: warning: comparison between pointer and integer [enabled by default]
pubdesc.c: In function 'MakeReplaceAuthorsForm':
pubdesc.c:4289:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable]
pubdesc.c: In function 'DisplayDocSum':
pubdesc.c:4851:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable]
pubdesc.c: At top level:
pubdesc.c:5363:13: warning: 'Quit' defined but not used [-Wunused-function]
pubdesc.c:5099:14: warning: 'AddAll' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqsub.c
seqsub.c: In function 'SeqSubmitFromTemplateEditor':
seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mapgene.c
mapgene.c: In function 'load_new_align':
mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable]
mapgene.c: In function 'figure_loc_by_position':
mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable]
mapgene.c: In function 'cvt_loc_for_single_gene':
mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable]
mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable]
mapgene.c: In function 'print_header_for_center':
mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
mapgene.c: In function 'PrintGeneticMarkerForOneMap':
mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
mapgene.c: At top level:
mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function]
mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function]
mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function]
mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function]
mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function]
mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function]
mapgene.c: In function 'PrintContigForOneMap':
mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wuninitialized]
mapgene.c:3152:7: note: 'yac_num' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prtgene.c
prtgene.c: In function 'print_store_for_html':
prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable]
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ddvclick.c
ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD':
ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
ddvclick.c: In function 'DDV_SendBSPSelectMsg':
ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
ddvclick.c: In function 'DDV_DragProc':
ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ddvclick.c: In function 'DDV_HoldProc':
ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable]
ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function]
ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function]
ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function]
ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function]
ddvclick.c: In function 'DDV_GetSeqNameGivenRow':
ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
ddvclick.c: In function 'DDV_SendBSPSelectMsg.constprop.4':
ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wuninitialized]
ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized]
ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
ddvgraph.c: In function 'DDV_DrawSequence':
ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable]
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ddvopen.c
ddvopen.c: In function 'DDV_GetAndCheckSeqAlign':
ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_FOpenAcceptProc':
ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_NetOpen_okProc':
ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_ImportBioseqDlg':
ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ddvopen.c: In function 'DDV_HideDlg':
ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ddvopen.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function]
ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function]
ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
ddvpanel.c: In function 'DDV_CreateViewerPanel':
ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
ddvpanel.c: In function 'DDV_DispStyles_OkProc':
ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable]
ddvpanel.c: In function 'DDV_ExportTexte':
ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable]
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function]
ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function]
ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function]
ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function]
ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function]
ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function]
ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function]
ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function]
ddvpanel.c: In function 'DDVExportTexteOkProc':
ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wuninitialized]
ddvpanel.c: In function 'DDV_SortPGPLineNum':
ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wuninitialized]
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF corematx.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dvncode.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
objmmdb1.c: In function 'BiostrucAsnRead':
objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucIdFree':
objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucIdAsnRead':
objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucSetAsnRead':
objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucAnnotSetAsnRead':
objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead':
objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucDescrFree':
objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucHistoryAsnRead':
objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucReplaceAsnRead':
objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree':
objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiostrucSourceAsnRead':
objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead':
objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucGraphAsnRead':
objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiomolDescrFree':
objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ResidueGraphAsnRead':
objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'MoleculeGraphAsnRead':
objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'InterResidueBondAsnRead':
objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ResidueAsnRead':
objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ResidueGraphPntrFree':
objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'ResidueGraphPntrAsnRead':
objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucGraphPntrAsnRead':
objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead':
objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'AtomAsnRead':
objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: In function 'IntraResidueBondAsnRead':
objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'ChiralCenterAsnRead':
objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'AtomPntrAsnRead':
objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb1.c: In function 'AtomPntrSetAsnRead':
objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
objmmdb2.c: In function 'BiostrucModelAsnRead':
objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelDescrFree':
objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'ModelSpaceAsnRead':
objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'Coordinates_coordinatesFree':
objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'Coordinates_coordinatesAsnRead':
objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'ReferenceFrameAsnRead':
objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'CoordinatesFree':
objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'AtomicCoordinatesAsnRead':
objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'Surface_surfaceFree':
objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'Surface_surfaceAsnRead':
objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'DensityCoordinatesAsnRead':
objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ModelSpacePointsAsnRead':
objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AtomicTemperatureFactorsFree':
objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable]
objmmdb2.c: In function 'AtomicOccupanciesAsnRead':
objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AlternateConformationIdsAsnRead':
objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'ConformationEnsembleAsnRead':
objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead':
objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead':
objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'TMeshAsnRead':
objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: In function 'TrianglesAsnRead':
objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c:1761:10: note: 'choice' was declared here
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb2.c:828:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
objmmdb3.c: In function 'BiostrucFeatureSetAsnRead':
objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ChemGraphPntrsFree':
objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'AtomPntrsAsnRead':
objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ChemGraphAlignmentAsnRead':
objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ChemGraphInteractionAsnRead':
objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'SphereAsnRead':
objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ConeAsnRead':
objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'CylinderAsnRead':
objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BrickAsnRead':
objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'TransformAsnRead':
objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucFeatureSetDescrFree':
objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'Location_locationFree':
objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'Property_propertyFree':
objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ColorPropAsnRead':
objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'CameraAsnRead':
objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucScriptAsnRead':
objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionSimilarityAsnRead':
objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'OtherFeatureAsnRead':
objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead':
objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'MoleculePntrsAsnRead':
objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead':
objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ResidueIntervalPntrAsnRead':
objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionCoordinatesAsnRead':
objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RegionBoundaryFree':
objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'AlignStatsAsnRead':
objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RealValueAsnRead':
objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'ModelSpacePointAsnRead':
objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'MoveFree':
objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'RotMatrixAsnRead':
objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'TransMatrixAsnRead':
objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'GLMatrixAsnRead':
objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: In function 'BiostrucScriptStepAsnRead':
objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
objmmdb3.c: In function 'MoveAsnRead':
objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'RegionBoundaryAsnRead':
objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead':
objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'ChemGraphPntrsAsnRead':
objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c:3401:10: note: 'choice' was declared here
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmmdb3.c:2303:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objcn3d.c
objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead':
objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead':
objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dColorAsnRead':
objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dBackboneStyleAsnRead':
objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dGeneralStyleAsnRead':
objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead':
objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dStyleSettingsAsnRead':
objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead':
objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dStyleTableItemAsnRead':
objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dResidueRangeAsnRead':
objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead':
objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dObjectLocationAsnRead':
objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dUserAnnotationAsnRead':
objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c: In function 'Cn3dGLMatrixAsnRead':
objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dVectorAsnRead':
objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: In function 'Cn3dViewSettingsAsnRead':
objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable]
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
mmdbapi.c: In function 'MakeAModelstruc':
mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable]
mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable]
mmdbapi.c: In function 'AddPFBSelect':
mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
mmdbapi1.c: In function 'FreeAtomicModelAsnLists':
mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable]
mmdbapi1.c: In function 'FetchBS':
mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable]
mmdbapi1.c: In function 'FreeSurfaceModelAsnList':
mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'MakeChemGraphNodeList':
mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'DoApplyTransform':
mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'DoReverseTransform':
mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable]
mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable]
mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable]
mmdbapi1.c: In function 'fnPBSFtoPSA':
mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable]
mmdbapi1.c: In function 'InstallAlignedSlave':
mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable]
mmdbapi1.c: In function 'BiostrucAddFeature':
mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable]
mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable]
mmdbapi1.c: In function 'BiostrucAsnGet':
mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable]
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized]
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized]
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
mmdbapi2.c: In function 'GetAtomLocs':
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
mmdbapi2.c: In function 'AssignAtomLocId':
mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'AssignBackBone':
mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'AssignVirtual':
mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'AssignIons':
mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'MolFromPDBChain':
mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi2.c: In function 'SeqStringFromMol':
mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
mmdbapi3.c: In function 'WritePDBHeader':
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
mmdbapi3.c: In function 'WritePDBRemarks':
mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable]
mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable]
mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable]
mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable]
mmdbapi3.c: In function 'WritePDBConnect':
mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi3.c: In function 'WritePDBModelList':
mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable]
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable]
mmdbapi3.c: In function 'WriteFASTAMolecule':
mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
mmdbapi4.c: In function 'RefreshSurface':
mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable]
mmdbapi4.c: In function 'FreeCoordinatesAsnLists':
mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable]
mmdbapi4.c: In function 'FreeRedundantAsn':
mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable]
mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
mmdbapi4.c: In function 'RefreshModelAsnMem':
mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable]
mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable]
mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable]
mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable]
mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable]
mmdbapi4.c: In function 'RebuildChemGraphAsn':
mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable]
mmdbapi4.c: In function 'WriteASNChemGraphOnly':
mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable]
mmdbapi4.c: In function 'FreeSingleModel':
mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable]
mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable]
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable]
mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable]
mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable]
mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable]
mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable]
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable]
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wuninitialized]
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function 'LoadSubsetTable':
vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF prunebsc.c
prunebsc.c: In function 'PruneFeatureSet':
prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable]
prunebsc.c: In function 'PruneModel':
prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable]
prunebsc.c: In function 'PruneBiostruc':
prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:173:8: note: 'mtype' was declared here
prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:171:47: note: 'currenthet' was declared here
prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:102:8: note: 'mtype' was declared here
prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wuninitialized]
prunebsc.c:100:38: note: 'currentbp' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objcdd.c
objcdd.c: In function 'CddIdFree':
objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddIdAsnRead':
objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddIdSetAsnRead':
objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddIdSetAsnWrite':
objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddAsnRead':
objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddSetAsnRead':
objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddSetAsnWrite':
objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddTreeAsnRead':
objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddTreeSetAsnRead':
objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddTreeSetAsnWrite':
objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodesAsnRead':
objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodesAsnWrite':
objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddProjectAsnRead':
objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddOrgRefAsnRead':
objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddOrgRefSetAsnRead':
objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddOrgRefSetAsnWrite':
objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodeDescrFree':
objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddPrefNodeDescrAsnRead':
objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodeDescrSetAsnRead':
objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite':
objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'GlobalIdAsnRead':
objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddRepeatAsnRead':
objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddBookRefAsnRead':
objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddDescrSetAsnRead':
objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'CddDescrSetAsnWrite':
objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'MatrixAsnRead':
objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'TriangleAsnRead':
objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'UpdateCommentFree':
objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'UpdateCommentAsnRead':
objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'UpdateAlignAsnRead':
objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'RejectIdAsnRead':
objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'RejectIdAsnWrite':
objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'FeatureEvidenceFree':
objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'FeatureEvidenceAsnRead':
objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'AlignAnnotAsnRead':
objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'AlignAnnotSetAsnRead':
objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'AlignAnnotSetAsnWrite':
objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable]
objcdd.c: In function 'DomainParentAsnRead':
objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'SequenceTreeAsnRead':
objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'AlgorithmTypeAsnRead':
objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'SeqTreeNodeAsnRead':
objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'Children_footprintAsnRead':
objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'NodeAnnotationAsnRead':
objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddViewerRectAsnRead':
objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: In function 'CddViewerAsnRead':
objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c: In function 'CddScriptAsnRead':
objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable]
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
objcdd.c: In function 'CddDescrAsnRead':
objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cddutil.c
cddutil.c: In function 'CddGetPmIds':
cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable]
cddutil.c: In function 'CddGetAnnotNames':
cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddCheckForRepeats':
cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress]
cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg':
cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable]
cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'SeqAlignInform':
cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddAlignInform':
cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddPssmInform':
cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddPosFreqInform':
cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddDenDiagCposComputation':
cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddCposComputation':
cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddRetrieveBioseqById':
cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable]
cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable]
cddutil.c: In function 'CddConsensus':
cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddCposCompPart1':
cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddGetNewIndexForThreading':
cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable]
cddutil.c: In function 'CddCposComp':
cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
cddutil.c: In function 'CddDumpTaxLinks':
cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable]
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable]
../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function]
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
cddutil.c: In function 'CddBioseqCopy':
cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wuninitialized]
cddutil.c: In function 'CddCopyMSLDenDiag':
cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wuninitialized]
cddutil.c: In function 'CddCalculateTriangle':
cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wuninitialized]
cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wuninitialized]
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cddposutil.c
cddposutil.c: In function 'CddfindThreshSequences':
cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
cddposutil.c: In function 'CddfindDenseDiagThreshSequences':
cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
cddposutil.c: In function 'CddposFreqsToMatrix':
cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
cddposutil.c: In function 'CddposDenseDiagDemographics':
cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable]
cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable]
cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable]
cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable]
cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable]
cddposutil.c: In function 'CddSetUpSearchInternalByLoc':
cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable]
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable]
cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable]
cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable]
cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable]
cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable]
cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable]
cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable]
cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable]
cddposutil.c: In function 'CddposReadAlignment':
cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable]
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function]
../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function]
cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function]
cddposutil.c: In function 'CddposComputeSequenceWeights':
cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c:832:68: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c: In function 'CddposDemographics':
cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wuninitialized]
cddposutil.c:1246:63: note: 'min_query_length' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF objmime.c
objmime.c: In function 'NcbiMimeAsn1Free':
objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'Data_dataFree':
objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'Data_dataAsnRead':
objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'BiostrucAlignAsnRead':
objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucAlignSeqAsnRead':
objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucSeqAsnRead':
objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucSeqsAsnRead':
objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'SeqAlignData_seq_align_dataFree':
objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead':
objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable]
objmime.c: In function 'BundleSeqsAlignsAsnRead':
objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmime.c:516:10: note: 'choice' was declared here
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmime.c:1719:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF strucapi.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function 'atd':
thrdatd.c:201:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable]
thrdatd.c:198:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable]
thrdatd.c:188:14: warning: unused variable 'm' [-Wunused-variable]
thrdatd.c:188:12: warning: unused variable 'l' [-Wunused-variable]
thrdatd.c:171:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable]
thrdatd.c:170:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function 'bwfi':
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wuninitialized]
thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function 'cpal':
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function 'cpll':
thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function 'cprl':
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function 'cxei':
thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable]
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function 'g':
thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function 'salu':
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function 'sgoi':
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdslor.c
thrdslor.c: In function 'slor':
thrdslor.c:68:5: warning: 'mp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function 'slou':
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdspci.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function 'spea':
thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function 'spel':
thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function 'spni':
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function 'ttb0':
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
thrdttbi.c: In function 'ttbi':
thrdttbi.c:124:3: warning: 'sm' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function 'zsc':
thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable]
thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable]
thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable]
thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable]
thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable]
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wuninitialized]
thrdzsc.c:64:7: warning: 'tls' may be used uninitialized in this function [-Wuninitialized]
thrdzsc.c:64:7: warning: 'tlf' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o  thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF csim.c
csim.c: In function 'set_pam_200':
csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces]
csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces]
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'set_pam_file':
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'big_pass':
csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'diff1':
csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:893:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c: In function 'locate':
csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1062:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1072:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1129:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1139:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c:1144:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
csim.c: In function 'small_pass':
csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'display':
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
csim.c: In function 'SIM':
csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wuninitialized]
csim.c:928:23: note: 'dj' was declared here
csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wuninitialized]
csim.c:928:19: note: 'di' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF db_slist.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dust.c
dust.c: In function 'slpDust.isra.0':
dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_dust.c
blast_dust.c: In function 's_SlpDust':
blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF falign.c
falign.c: In function 'fbld_table':
falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'bbld_table':
falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'rcbld_table':
falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'ex_table':
falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'free_all':
falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'scan':
falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'fscan':
falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'bscan':
falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'rfscan':
falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'trcscan':
falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts]
falign.c: In function 'rclocal':
falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'enterS':
falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'local':
falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'align':
falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'calign':
falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
falign.c: In function 'malign':
falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF g_any.c
g_any.c: In function 'k_align':
g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c: In function 'z_ALIGN':
g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable]
g_any.c: In function 'CHECK_SCORE':
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c: At top level:
g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable]
g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable]
g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function 'SIM2':
sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable]
sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sim3.c
sim3.c: In function 'locate':
sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts]
sim3.c: At top level:
sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function]
sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function]
sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function]
sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function]
sim3.c: In function 'locate':
sim3.c:230:17: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized]
sim3.c:229:6: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sim4.c
sim4.c: In function 'sim4x':
sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
sim4.c: In function 'greedy':
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
sim4.c: In function 'DISPLAY':
sim4.c:2625:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sim4.c: At top level:
sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function]
sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function]
sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function]
sim4.c: In function 'locate':
sim4.c:2919:19: warning: 'paired_bj' may be used uninitialized in this function [-Wuninitialized]
sim4.c:2918:7: warning: 'paired_fj' may be used uninitialized in this function [-Wuninitialized]
sim4.c: In function 'sim4x':
sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wuninitialized]
sim4.c:1609:18: note: 'forth' was declared here
sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wuninitialized]
sim4.c:1609:12: note: 'back' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF simutil.c
simutil.c: In function 'make_align':
simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
simutil.c: At top level:
simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function]
simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function]
simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function]
simutil.c: In function 'sort_align_list':
simutil.c:602:28: warning: 'score2' may be used uninitialized in this function [-Wuninitialized]
simutil.c:602:28: warning: 'score1' may be used uninitialized in this function [-Wuninitialized]
simutil.c: In function 'get_top_K_alignment':
simutil.c:659:23: warning: 'score' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF slist.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF sec.c
sec.c: In function 'Region':
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:504:11: warning: 'old_l' may be used uninitialized in this function [-Wuninitialized]
sec.c:494:13: warning: 'ppj' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'ppi' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'pi' may be used uninitialized in this function [-Wuninitialized]
sec.c:513:13: warning: 'ej' may be used uninitialized in this function [-Wuninitialized]
sec.c:400:8: warning: 'ei' may be used uninitialized in this function [-Wuninitialized]
sec.c:511:13: warning: 'bj' may be used uninitialized in this function [-Wuninitialized]
sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'RB' may be used uninitialized in this function [-Wuninitialized]
sec.c:155:13: warning: 'LB' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function 'find_orf':
tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable]
tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable]
tfuns.c: At top level:
tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF toasn3.c
toasn3.c: In function 'FindOrg':
toasn3.c:1311:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'CheckQualsWithComm':
toasn3.c:1592:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'CheckQuals':
toasn3.c:1629:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'CountSourceFeat':
toasn3.c:2415:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
toasn3.c:2406:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'TASNTrimInternalSemicolons':
toasn3.c:3986:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'ImpFeatToProtRef':
toasn3.c:4672:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable]
toasn3.c: In function 'RemovePeptideImpFeats':
toasn3.c:4967:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
toasn3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
toasn3.c:1572:16: warning: 'GetQualValue' defined but not used [-Wunused-function]
toasn3.c: In function 'GetOriginalBeforeAdjustment':
toasn3.c:4185:29: warning: 'last' may be used uninitialized in this function [-Wuninitialized]
toasn3.c: In function 'FixNucProtSet':
toasn3.c:2058:21: warning: 'bseg' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function 'ChkSegset':
toporg.c:62:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
toporg.c:61:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
toporg.c:58:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
toporg.c:53:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'ChkNucProt':
toporg.c:594:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'StripBSfromParts':
toporg.c:1280:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
toporg.c:1279:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable]
toporg.c:1278:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'MapsToGenref':
toporg.c:1944:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable]
toporg.c:1939:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'FindOldLineage':
toporg.c:2521:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable]
toporg.c: In function 'StripBadTitleFromProteinProducts':
toporg.c:4968:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
toporg.c: At top level:
toporg.c:3010:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function]
toporg.c: In function 'MergeEquivCitSubs':
toporg.c:3831:16: warning: 'csp1' may be used uninitialized in this function [-Wuninitialized]
toporg.c: In function 'CheckMaps':
toporg.c:1715:11: warning: 'to' may be used uninitialized in this function [-Wuninitialized]
toporg.c:1696:24: note: 'to' was declared here
toporg.c:1714:13: warning: 'from' may be used uninitialized in this function [-Wuninitialized]
toporg.c:1696:18: note: 'from' was declared here
toporg.c: In function 'ConvertSegSetToDeltaSeq':
toporg.c:6566:29: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pobutil.c
pobutil.c: In function 'build_repeat_feat':
pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable]
pobutil.c: In function 'merge_StdSeg':
pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable]
pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable]
pobutil.c: In function 'AluFeat':
pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF stsutil.c
stsutil.c: In function 'InitSTSSearch_r':
stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable]
stsutil.c: In function 'GetSTSEntry':
stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable]
stsutil.c: In function 'STSCalculateHash':
stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts]
stsutil.c: In function 'STSReverse':
stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts]
stsutil.c: In function 'InitHashTable':
stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable]
stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable]
stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable]
stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable]
stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable]
stsutil.c: At top level:
stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF suggadj.c
suggadj.c: In function 'score_possible_splice_sites':
suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c: In function 'check_split_codon':
suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c: In function 'overlapping_fixer':
suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts]
suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF suggest.c
suggest.c: In function 'get_frames':
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
suggest.c: At top level:
suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function]
suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF suggslp.c
suggslp.c: In function 'MakeReverseSequence':
suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast.c
blast.c: In function 'BlastReevaluateWithAmbiguities':
blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable]
blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastGetVirtualOIDList':
blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
blast.c: In function 'BlastGetDbChunk':
blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
blast.c: In function 'BlastCreateQueryDNAP':
blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastWordFinder_contig':
blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastWordExtend':
blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastNewWordExtend':
blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastNtWordFinder_mh':
blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastNtWordFinder':
blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
blast.c: In function 'BlastSaveCurrentHitlist':
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
blast.c: In function 'SumHSPEvalue':
blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable]
blast.c: In function 'link_hsps':
blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable]
blast.c: In function 'blastMergeFilterLocs':
blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wuninitialized]
blast.c: In function 'BlastLinkHsps':
blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blastutl.c
blastutl.c: In function 'BlastSeqLocFilterEx':
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
blastutl.c: In function 'BlastPreliminaryGappedScore':
blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
blastutl.c: In function 'BlastGetGappedScore':
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
blastutl.c: In function 'BlastNtFindWords':
blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'BlastNewFindWordsEx':
blastutl.c:12124:30: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'BlastNewFindWords_Old':
blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'BlastFindWords':
blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11711:18: warning: 'start_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wuninitialized]
blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wuninitialized]
blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback':
blastutl.c:9008:42: warning: 'seqalign_array' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blastool.c
blastool.c: In function 'OOFBlastHSPGetNumIdentical':
blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable]
blastool.c: In function 'BlastCreateVirtualOIDList':
blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BlastInsertList2Heap':
blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BlastFreeHeap':
blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BLASTFilterOverlapRegions':
blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'BlastPrintAlignInfo':
blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
blastool.c: In function 'MegaBlastPrintAlignInfo':
blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wuninitialized]
blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blastconcat.c
blastconcat.c: In function 'BlastMakeFakeBspConcat':
blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF splutil.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
gapxdrop.c: In function 'ALIGN_EX':
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bandalg0.c
bandalg0.c: In function 'g_band0_align':
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg0.c:266:12: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bandalg1.c
bandalg1.c: In function 'gband_quadratic':
bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
bandalg1.c: In function 'g_band1_align':
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg1.c: In function 'gband_quadratic':
bandalg1.c:200:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg1.c:164:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bandalg2.c
bandalg2.c: In function 'gb_linear_align':
bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable]
bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable]
bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable]
bandalg2.c:326:9: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bandalg3.c
bandalg3.c: In function 'gband_linear_qgap':
bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
bandalg3.c:292:21: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg3.c:185:28: note: 'Y' was declared here
bandalg3.c:291:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg3.c:185:25: note: 'X' was declared here
bandalg3.c:217:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg3.c:180:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bandalg4.c
bandalg4.c: In function 'g_band4_align_small':
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable]
bandalg4.c: In function 'g_band4_align':
bandalg4.c:286:13: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:544:3: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:640:28: note: 'Y' was declared here
bandalg4.c:823:3: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:640:25: note: 'X' was declared here
bandalg4.c:694:10: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg4.c:634:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bandalg5.c
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
bandalg5.c: In function 'g_band5_align':
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:320:20: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
bandalg5.c:146:28: note: 'Y' was declared here
bandalg5.c:319:15: warning: 'X' may be used uninitialized in this function [-Wuninitialized]
bandalg5.c:146:25: note: 'X' was declared here
bandalg5.c:180:11: warning: 'c' may be used uninitialized in this function [-Wuninitialized]
bandalg5.c:140:17: note: 'c' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bandalgn.c
bandalgn.c: In function 'ExtendSeqAlign':
bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
bandalgn.c: In function 'CC_ExtendSeqAlign':
bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
bandalgn.c: At top level:
bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable]
bandalgn.c: In function 'LocalBandToEditBlock':
bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c: In function 'SetLowUpFromBlast':
bandalgn.c:1053:14: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1053:14: warning: 'maxsc' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1060:7: warning: 'maxlen' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1048:10: warning: 'maxdi' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c: In function 'GetAlignExtremes':
bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wuninitialized]
bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blastkar.c
blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable]
blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable]
blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable]
blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable]
blastkar.c: In function 'BLAST_ScoreBlkNew':
blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF actutils.c
actutils.c: In function 'SlideToHit':
actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable]
actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable]
actutils.c: In function 'ResolveSpinConflict':
actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable]
actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable]
actutils.c: In function 'ACT_FindBestAlnByDotPlot':
actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function]
actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function]
actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function]
actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function]
actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function]
actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function]
actutils.c: In function 'GetOldBlastAlignmentPiece':
actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF posit.c
posit.c: In function 'posDemographics':
posit.c:1110:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
posit.c: In function 'posFreqsToMatrix':
posit.c:1679:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (unsigned int)((unsigned int)length * 4u)) + (unsigned int)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
posit.c: In function 'posComputePseudoFreqs':
posit.c:1840:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
posit.c: In function 'WposComputation':
posit.c:1988:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
posit.c: In function 'posPrintInformation':
posit.c:2319:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable]
posit.c: In function 'posFindAlignmentDimensions':
posit.c:3087:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wuninitialized]
posit.c: In function 'posComputeSequenceWeights':
posit.c:1447:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wuninitialized]
posit.c:1424:18: warning: 'Sigma' may be used uninitialized in this function [-Wuninitialized]
posit.c: In function 'posReadCheckpoint':
posit.c:2873:28: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
posit.c:2702:11: note: 'j' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF lookup.c
lookup.c: In function 'lookup_get_memory':
lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
lookup.c: In function 'MegaBlastBuildLookupTable':
lookup.c:1047:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:1051:35: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:1078:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:1082:31: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable]
lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF readdb.c
readdb.c: In function 'readdb_parse_db_names':
readdb.c:2498:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
readdb.c: In function 'FindBlastDBFileEx':
readdb.c:3475:33: warning: unused variable 'envp' [-Wunused-variable]
readdb.c: In function 'readdb_new_internalEx':
readdb.c:3553:25: warning: unused variable 'envp' [-Wunused-variable]
readdb.c: In function 'readdb_get_link':
readdb.c:4747:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable]
readdb.c:4746:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'readdb_check_oid':
readdb.c:4891:18: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses]
readdb.c: In function 'readdb_seqid2fasta':
readdb.c:5231:22: warning: unused variable 'dummy_gi' [-Wunused-variable]
readdb.c:5175:13: warning: unused variable 'chptr' [-Wunused-variable]
readdb.c: In function 'FDBLoadMembershipsTable':
readdb.c:8260:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'SeqIdE2Index':
readdb.c:8572:13: warning: unused variable 'tmp' [-Wunused-variable]
readdb.c:8571:11: warning: unused variable 'tmptype' [-Wunused-variable]
readdb.c: In function 'SeqIdSetE2Index':
readdb.c:8876:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'Fastacmd_Search_ex':
readdb.c:12072:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable]
readdb.c: In function 'DumpOneSequence':
readdb.c:12409:14: warning: unused variable 'numeric_id' [-Wunused-variable]
readdb.c: At top level:
../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable]
../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
readdb.c:12821:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function]
readdb.c: In function 'readdb_get_taxonomy_names':
readdb.c:5674:28: warning: 'ufp_last' may be used uninitialized in this function [-Wuninitialized]
readdb.c: In function 'readdb_get_descriptor':
readdb.c:6663:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wuninitialized]
readdb.c: In function 'GetAccList':
readdb.c:11813:29: warning: 'AccListLast' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbisam.c
ncbisam.c: In function 'ISAMMakeStringIndex':
ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable]
ncbisam.c: In function 'ISAMInitSearch':
ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable]
ncbisam.c: In function 'ISAMMakeIndex':
ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:983:14: warning: 'KeyInfo' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c: In function 'ISAMCreateDatabase':
ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c: In function 'NISAMSearch':
ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1750:19: warning: 'KeyPage' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized]
ncbisam.c:1618:27: note: 'SampleNum' was declared here
ncbisam.c: In function 'SISAMSearch':
ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbisort.c
ncbisort.c: In function 'SORTFracCompare':
ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int]
ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int]
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function]
ncbisort.c: In function 'SORTMergeFPS':
ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salign.c
salign.c: In function 'BandAlignTwoSeqLocsFunc':
salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable]
salign.c: In function 'SortBlastHits':
salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable]
salign.c: In function 'link_solution':
salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable]
salign.c: In function 'SortBlastHits':
salign.c:411:6: warning: 'salpdup' may be used uninitialized in this function [-Wuninitialized]
salign.c:455:22: warning: 'salptmp' may be used uninitialized in this function [-Wuninitialized]
salign.c:445:28: warning: 'preselect' may be used uninitialized in this function [-Wuninitialized]
salign.c: In function 'TranslateSeqLoc.constprop.5':
salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wuninitialized]
salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.3':
salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wuninitialized]
salign.c:1408:15: note: 'tail' was declared here
salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
salign.c:1301:30: note: 'stop' was declared here
salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized]
salign.c:1301:22: note: 'start1' was declared here
salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wuninitialized]
salign.c:1229:30: note: 'stop' was declared here
salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wuninitialized]
salign.c:1229:22: note: 'start1' was declared here
salign.c: In function 'SeqLocListToSeqAlign':
salign.c:1672:23: warning: 'master_slp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF salptool.c
salptool.c: In function 'MergeTwoDspBySIM4':
salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable]
salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
salptool.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function]
salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function]
salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function]
salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function]
salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkutil.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkpcc.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkptpf.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkepi.c
urkepi.c: In function 'PredictEpiI0':
urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'OptimizeEpiComp':
urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'OptimizeEpiHP':
urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'OptimizeEpiProbFunc':
urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts]
urkepi.c: In function 'FilterEpi':
urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wuninitialized]
urkepi.c:936:56: note: 'right' was declared here
urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wuninitialized]
urkepi.c:936:50: note: 'left' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkfltr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkdust.c
urkdust.c: In function 'DustMe_h':
urkdust.c:196:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
urkdust.c: In function 'DustForGraph':
urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urksigu.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c: In function 'getprob':
seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkbias.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function]
urkcnsrt.c: In function 'Scan3Frames':
urkcnsrt.c:1385:5: warning: 'length' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF urktree.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pseed3.c
pseed3.c: In function 'SeedPruneHitsFromSeedReturn':
pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable]
pseed3.c: In function 'seedEngineCore':
pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pseed3.c: In function 'output_hits':
pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable]
pseed3.c: In function 'init_order':
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pattern1.c
pattern1.c: In function 'init_pattern':
pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts]
pattern1.c: In function 'find_hitsS_DNA':
pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type]
pattern1.c: In function 'and':
pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
pattern1.c: In function 'align':
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
pattern1.c: In function 'get_patL':
pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'align':
pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wuninitialized]
pattern1.c:1097:15: warning: 'tempCC' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'get_patLL':
pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'init_pattern':
pattern1.c:178:14: warning: 'tj' may be used uninitialized in this function [-Wuninitialized]
pattern1.c: In function 'align_of_pattern':
pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF impatool.c
impatool.c: In function 'IMPALAPrintHelp':
impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF posit2.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mbalign.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF vecscrn.c
vecscrn.c: In function 'VSPrintOverviewFromSeqLocs':
vecscrn.c:1078:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
vecscrn.c: In function 'VSPrintListFromSeqLocs':
vecscrn.c:1188:9: warning: 'tmp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF mblast.c
mblast.c: In function 'BioseqMegaBlastEngineCore':
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc':
mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastWordFinder_disc_1b':
mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable]
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
mblast.c: In function 'MegaBlastGappedAlign':
mblast.c:2920:35: warning: 'gap_align' may be used uninitialized in this function [-Wuninitialized]
mblast.c: In function 'MegaBlastWordFinder_disc':
mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized]
mblast.c:2117:51: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized]
mblast.c: In function 'MegaBlastWordFinder':
mblast.c:2711:51: warning: 'ecode2' may be used uninitialized in this function [-Wuninitialized]
mblast.c:2373:17: note: 'ecode2' was declared here
mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wuninitialized]
mblast.c:2373:9: note: 'ecode1' was declared here
mblast.c: In function 'MegaBlastGapInfoToSeqAlign':
mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF rpsutil.c
rpsutil.c: In function 'RPSBlastSearchLight':
rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable]
rpsutil.c: In function 'RPSBgetCddHits':
rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable]
rpsutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
rpsutil.c: In function 'RPSAlignTraceBack':
rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized]
rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wuninitialized]
rpsutil.c: In function 'RPSCalcEValue':
rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wuninitialized]
rpsutil.c: In function 'RPSBgetCddHits':
rpsutil.c:2238:13: warning: 'dbname' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function 'Kappa_SequenceGetProteinRange':
kappa.c:1399:7: warning: unused variable 'i' [-Wunused-variable]
kappa.c: At top level:
kappa.c:2203:5: warning: initialization from incompatible pointer type [enabled by default]
kappa.c:2203:5: warning: (near initialization for 'redo_align_callbacks.get_range') [enabled by default]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF xmlblast.c
xmlblast.c: In function 'PSIXmlInit':
xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
xmlblast.c: In function 'BXMLGetSeqLineForStdSeg':
xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wuninitialized]
xmlblast.c: In function 'BXMLSeqAlignToHits':
xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized]
xmlblast.c: In function 'SeqAlignToHits':
xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
bxmlobj.c: In function 'BlastOutputAsnRead':
bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c: In function 'ParametersAsnRead':
bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable]
bxmlobj.c: In function 'IterationAsnRead':
bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c: In function 'StatisticsAsnRead':
bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable]
bxmlobj.c: In function 'HitAsnRead':
bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c: In function 'HspAsnRead':
bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dotseq.c
dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces]
dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces]
dotseq.c: In function 'DOT_BuildPLookup':
dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable]
dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable]
dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable]
dotseq.c: In function 'DOT_ComputeHits':
dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable]
dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable]
dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable]
dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot':
dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
dotseq.c: In function 'DOT_BuildHitList':
dotseq.c:1286:9: warning: 'index' may be used uninitialized in this function [-Wuninitialized]
dotseq.c:1310:19: note: 'index' was declared here
dotseq.c:1309:19: warning: 'hitlist' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF spidey.c
spidey.c: In function 'SPI_PrintResult':
spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_AlnSinglemRNAToPieces':
spidey.c:2850:4: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c: In function 'SPI_FillInLastmRNAHoles':
spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_FindBestAlnByDotPlot':
spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_ConnectAlnPieces':
spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable]
spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_AdjustSplicesInPieces':
spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable]
spidey.c: In function 'SPI_CheckMrnaOrder':
spidey.c:10293:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c:10297:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c:10310:22: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c:10312:25: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF motif.c
motif.c: In function 'MOT_FindPolyA':
motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
motif.c: In function 'MOT_FindKozak':
motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
motif.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
blfmtutl.c: In function 'BlastPrintTabularResults':
blfmtutl.c:1113:13: warning: 'alignments_count' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1331:19: warning: 's_end' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1330:21: warning: 's_start' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1329:19: warning: 'q_end' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1328:21: warning: 'q_start' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c:1072:20: warning: 'query_id' may be used uninitialized in this function [-Wuninitialized]
blfmtutl.c: In function 'BlastSetUserErrorString':
blfmtutl.c:1431:13: warning: 'title' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF compo_heap.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gdfontg.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gdfontt.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pictogif.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gdfontl.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gdfonts.c
gcc  -DWIN_GIF -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
ncbidrwg.c: In function 'Nlm_SetFontData':
ncbidrwg.c:489:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_GetFontData':
ncbidrwg.c:501:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_FindFont':
ncbidrwg.c:2234:7: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_ReuseFont':
ncbidrwg.c:2252:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_GetFontSpec':
ncbidrwg.c:2860:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c:2867:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_AssignPrinterFont':
ncbidrwg.c:2928:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_GIFRgnToRect':
ncbidrwg.c:4098:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_RectToGIFRgn':
ncbidrwg.c:4109:5: warning: statement with no effect [-Wunused-value]
ncbidrwg.c: In function 'Nlm_ClearRgn':
ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_DiffRgn':
ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_XorRgn':
ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_EqualRgn':
ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_EmptyRgn':
ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_CopyPixmap':
ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable]
ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable]
ncbidrwg.c: In function 'Nlm_GetColorRGB':
ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF algorend.c
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
algorend.c: In function 'RenderObject':
algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable]
algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable]
algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable]
algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable]
algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable]
algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderLabel':
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
algorend.c: In function 'Do3DOrigin':
algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable]
algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable]
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
algorend.c: In function 'RenderLabel':
algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'MasterChangeRenderProc.isra.6':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'RenderObject':
algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'Do3DOrigin':
algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
cn3dopen.c:513:15: note: 'salp' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_GetSubSet':
cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
cn3dwin.c: In function 'Viewer3DViewer':
cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable]
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqcons.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized]
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
algorend.c: In function 'Cn3D_SetOGLFont':
algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable]
algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable]
algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable]
algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable]
algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable]
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
algorend.c: In function 'MasterChangeLabelsProc':
algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable]
algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable]
algorend.c: In function 'ResetLabelCtrls':
algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'LabelControls':
algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable]
algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable]
algorend.c: In function 'Cn3D_SetQualityFromAppParams':
algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable]
algorend.c: In function 'OGL_Quality':
algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable]
algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable]
algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderControls':
algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderObject':
algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable]
algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable]
algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable]
algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable]
algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable]
algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable]
algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable]
algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable]
algorend.c: In function 'RenderLabel':
algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable]
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable]
algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable]
algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable]
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
algorend.c: In function 'RenderLabel':
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wuninitialized]
algorend.c: In function 'MasterChangeRenderProc':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wuninitialized]
cn3dopen.c:513:15: note: 'salp' was declared here
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
cn3dsave.c: In function 'Cn3D_AddMatrix':
cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
cn3dsave.c: In function 'Cn3D_GetSubSet':
cn3dsave.c:296:20: warning: 'isep' may be used uninitialized in this function [-Wuninitialized]
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Cn3D_Default_HLColor':
cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable]
cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable]
cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable]
cn3dwin.c: In function 'Cn3D_RedrawEx':
cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable]
cn3dwin.c: In function 'fnPreCHLresidue':
cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
cn3dwin.c: In function 'Cn3DWin':
cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration]
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable]
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable]
cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable]
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function]
cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function]
cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function]
cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function]
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
cn3dshim.c: In function 'Cn3D_Size':
cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable]
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable]
cn3dstyl.c: In function 'ModelSetLabelCtrls':
cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable]
cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable]
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wuninitialized]
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wuninitialized]
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wuninitialized]
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_engine.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_extend.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_filter.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_hits.c
blast_hits.c: In function 'Blast_HSPResultsFromHSPStreamWithLimitEx':
blast_hits.c:3499:13: warning: variable 'rm_hsps' set but not used [-Wunused-but-set-variable]
blast_hits.c: At top level:
blast_hits.c:3212:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_itree.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_message.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_options.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_seg.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_sw.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_setup.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_stat.c
blast_stat.c: In function 's_BlastGumbelBlkNew':
blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable]
blast_stat.c: At top level:
blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function]
blast_stat.c: In function 'BLAST_SpougeEtoS':
blast_stat.c:5205:12: warning: 'a' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function 'Blast_TracebackFromHSPList':
blast_traceback.c:393:38: warning: 'qe' may be used uninitialized in this function [-Wuninitialized]
blast_traceback.c:365:22: note: 'qe' was declared here
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_util.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gapinfo.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF greedy_align.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF link_hsps.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF pattern.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF phi_extend.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF lookup_util.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_psi.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_posit.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_program.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_tune.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF split_query.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_api.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_input.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_format.c
blast_format.c: In function 's_MBXmlInit':
blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
blast_format.c: In function 's_LoadMatrix':
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function 'Blast_PrelimSearchThreadRun':
blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_returns.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_seq.c
blast_seq.c: In function 's_SeqLocFillSequenceBuffer':
blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped':
blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
seqsrc_readdb.c: In function 's_ReaddbGetNextChunk':
seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function 's_TwoSeqBasicFillOptions':
twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable]
twoseq_api.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF dust_filter.c
dust_filter.c: In function 's_GetFilteringLocations':
dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
gcc  -c -g -O2 -Wall  -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
hspfilter_queue.c: In function 's_BlastHSPQueueInit':
hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable]
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
gcc  -o asntool -g -O2 -Wall   -I../include -DWIN_MOTIF  -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
asncode.c: In function 'AsnCode_SETOF_base_or_user':
asncode.c:1518:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable]
asncode.c:1517:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
asncode.c: In function 'userobj_and_basetype_SETOF':
asncode.c:2472:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
asncode.c: In function 'AsnCodeIsReallyChoice':
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart':
asncode.c:3623:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable]
asncode.c: In function 'AsnCodeIter':
asncode.c:4237:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
asncode.c: In function 'AsnCode':
asncode.c:4316:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable]
asncode.c: At top level:
asncode.c:286:17: warning: 'defptr' defined but not used [-Wunused-variable]
asncode.c:288:17: warning: 'defbigint' defined but not used [-Wunused-variable]
asncode.c:289:17: warning: 'defreal' defined but not used [-Wunused-variable]
asncode.c:290:17: warning: 'defbool' defined but not used [-Wunused-variable]
asncode.c:291:17: warning: 'defbyte' defined but not used [-Wunused-variable]
cp -p asntool ../bin
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall  " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
	    CFLAGS1="-c -g -O2 -Wall " VIBLIBS= VIBFLAG= LIB50=-lpcre
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc  -o testcore -g -O2 -Wall   -I../include  -L../shlib  testcore.c  -lncbi  -lm
testcore.c: In function 'TestMemory':
testcore.c:235:5: warning: statement with no effect [-Wunused-value]
testcore.c: At top level:
testcore.c:337:13: warning: 'TestStrings' defined but not used [-Wunused-function]
gcc  -o makeset -g -O2 -Wall   -I../include  -L../shlib  makeset.c -lncbi
In file included from makeset.c:9:0:
../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default]
../include/all.h:5745:0: note: this is the location of the previous definition
makeset.c: In function 'Nlm_Main':
makeset.c:27:26: warning: unused variable 'uid' [-Wunused-variable]
makeset.c:27:16: warning: unused variable 'tempseek' [-Wunused-variable]
makeset.c:27:7: warning: unused variable 'seekptr' [-Wunused-variable]
gcc  -o getmesh -g -O2 -Wall   -I../include  -L../shlib  getmesh.c -lncbi
gcc  -o indexpub -g -O2 -Wall   -I../include  -L../shlib  indexpub.c -lncbi
indexpub.c: In function 'Nlm_Main':
indexpub.c:60:11: warning: 'seekptr' may be used uninitialized in this function [-Wuninitialized]
gcc  -o getpub -g -O2 -Wall   -I../include  -L../shlib  getpub.c -lncbi
gcc  -o testobj -g -O2 -Wall   -I../include  -L../shlib  testobj.c  -lncbiobj -lncbi  -lm
gcc  -o seqtest -g -O2 -Wall   -I../include  -L../shlib  seqtest.c  -lncbiobj -lncbi  -lm
gcc  -o dosimple -g -O2 -Wall   -I../include  -L../shlib  dosimple.c  -lncbiobj -lncbi  -lm
gcc  -o asn2ff -g -O2 -Wall   -I../include  -L../shlib  asn2ff.c -lncbiobj -lncbi
asn2ff.c: In function 'Nlm_Main':
asn2ff.c:129:10: warning: unused variable 'good' [-Wunused-variable]
asn2ff.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
asn2ff.c: In function 'Nlm_Main':
asn2ff.c:405:13: warning: 'atp2' may be used uninitialized in this function [-Wuninitialized]
asn2ff.c:352:9: warning: 'atp1' may be used uninitialized in this function [-Wuninitialized]
gcc  -o checksub -g -O2 -Wall   -I../include  -L../shlib  checksub.c -lncbiobj -lncbi
gcc  -o asndhuff -g -O2 -Wall   -I../include  -L../shlib  asndhuff.c -lncbicdr -lncbiobj -lncbi
asndhuff.c: In function 'do_medline':
asndhuff.c:182:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
asndhuff.c: In function 'do_sequence':
asndhuff.c:221:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
asndhuff.c:200:10: warning: unused variable 'val' [-Wunused-variable]
gcc  -o entrcmd -g -O2 -Wall   -I../include  -L../shlib  entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
entrcmd.c: In function 'PrintDSPMwww':
entrcmd.c:373:21: warning: unused variable 'lsp' [-Wunused-variable]
entrcmd.c: In function 'PrintDSPNwww':
entrcmd.c:465:21: warning: unused variable 'lsp' [-Wunused-variable]
entrcmd.c: In function 'PrintDSPPwww':
entrcmd.c:569:21: warning: unused variable 'lsp' [-Wunused-variable]
entrcmd.c: In function 'TermProcessing':
entrcmd.c:1297:13: warning: variable 'inclusive' set but not used [-Wunused-but-set-variable]
entrcmd.c:1296:13: warning: variable 'endWithTerm' set but not used [-Wunused-but-set-variable]
entrcmd.c:1295:13: warning: variable 'beginWithTerm' set but not used [-Wunused-but-set-variable]
entrcmd.c: At top level:
entrcmd.c:284:16: warning: 'IsGenBank' defined but not used [-Wunused-function]
entrcmd.c: In function 'LinkSetToLocalLinkSet':
entrcmd.c:212:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized]
entrcmd.c: In function 'TermProcessing':
entrcmd.c:1387:43: warning: 'ratio' may be used uninitialized in this function [-Wuninitialized]
entrcmd.c: In function 'Nlm_Main':
entrcmd.c:1548:17: warning: 'db' may be used uninitialized in this function [-Wuninitialized]
entrcmd.c:1476:13: note: 'db' was declared here
entrcmd.c:1602:31: warning: 'vector' may be used uninitialized in this function [-Wuninitialized]
entrcmd.c:1582:13: note: 'vector' was declared here
entrcmd.c:2207:24: warning: 'neighborFile' may be used uninitialized in this function [-Wuninitialized]
entrcmd.c:1447:32: warning: 'taxString' may be used uninitialized in this function [-Wuninitialized]
entrcmd.c:1917:13: note: 'taxString' was declared here
entrcmd.c:2231:23: warning: 'termString' may be used uninitialized in this function [-Wuninitialized]
entrcmd.c:2137:12: warning: 'boolString' may be used uninitialized in this function [-Wuninitialized]
gcc  -o errhdr -g -O2 -Wall   -I../include  -L../shlib  errhdr.c -lncbi
gcc  -o cdscan -g -O2 -Wall   -I../include  -L../shlib  cdscan.c  -lncbiacc -lncbicdr -lncbiobj -lncbi  -lm
cdscan.c:133:13: warning: 'root' defined but not used [-Wunused-variable]
cdscan.c:392:13: warning: 'GenBankPubs' defined but not used [-Wunused-function]
cdscan.c:576:13: warning: 'SeqEntryToFeat' defined but not used [-Wunused-function]
gcc  -o findspl -g -O2 -Wall   -I../include  -L../shlib  findspl.c -lncbiacc -lncbiobj -lncbi
gcc  -o ncbisort -g -O2 -Wall   -I../include  -L../shlib  sortcmd.c -lncbitool -lblastcompadj \
		-lncbi -lm
gcc  -o fa2htgs -g -O2 -Wall   -I../include  -L../shlib  fa2htgs.c -lncbiobj -lncbi
fa2htgs.c: In function 'Nlm_Main':
fa2htgs.c:474:25: warning: 'dsp' may be used uninitialized in this function [-Wuninitialized]
fa2htgs.c:448:16: note: 'dsp' was declared here
gcc  -o fastacmd -g -O2 -Wall   -I../include  -L../shlib  fastacmd.c -lncbitool -lncbi
gcc  -o formatdb -g -O2 -Wall   -I../include  -L../shlib  formatdb.c -lncbitool -lncbiobj -lncbi
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o formatrpsdb -g -O2 -Wall   -I../include  -L../shlib  formatrpsdb.c -lncbitool \
		-lblast -lncbiobj -lncbi
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
formatrpsdb.c: In function 'RPSUpdateStatistics':
formatrpsdb.c:440:43: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
formatrpsdb.c: In function 'RPSUpdatePSSM':
formatrpsdb.c:575:27: warning: 'j' may be used uninitialized in this function [-Wuninitialized]
gcc  -o blastall -g -O2 -Wall   -I../include  -L../shlib  blastall.c  -lblastapi \
		-lblast -lncbitool -lncbiobj -lncbi 
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized]
gcc  -o blastpgp -g -O2 -Wall   -I../include  -L../shlib  blastpgp.c  -lncbitool \
		-lncbiobj -lncbi 
blastpgp.c: In function 'PGPFormatFooter':
blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable]
blastpgp.c: In function 'Nlm_Main':
blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable]
blastpgp.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o testval -g -O2 -Wall   -I../include  -L../shlib  testval.c -lncbiobj -lncbi -lm
testval.c: In function 'Nlm_Main':
testval.c:188:9: warning: 'atp2' may be used uninitialized in this function [-Wuninitialized]
testval.c:183:9: warning: 'atp' may be used uninitialized in this function [-Wuninitialized]
gcc  -o seedtop -g -O2 -Wall   -I../include  -L../shlib  seedtop.c  -lncbitool \
		-lncbiobj -lncbi 
seedtop.c: In function 'Nlm_Main':
seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
seedtop.c:391:22: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
gcc  -o makemat -g -O2 -Wall   -I../include  -L../shlib  makemat.c  -lncbitool \
		-lncbiobj -lncbi 
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
makemat.c: In function 'makeMatrixName':
makemat.c:97:15: warning: 'lastc' may be used uninitialized in this function [-Wuninitialized]
makemat.c: In function 'Nlm_Main':
makemat.c:437:27: warning: 'sbp' may be used uninitialized in this function [-Wuninitialized]
makemat.c:244:23: note: 'sbp' was declared here
makemat.c:416:24: warning: 'relativeMatrixFileName' may be used uninitialized in this function [-Wuninitialized]
makemat.c:230:29: note: 'relativeMatrixFileName' was declared here
makemat.c:281:19: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized]
makemat.c:232:10: note: 'prefixLength' was declared here
gcc  -o copymat -g -O2 -Wall   -I../include  -L../shlib  copymat.c  -lblast -lncbitool \
		-lncbi 
copymat.c: In function 'RPSCreateLookupFile':
copymat.c:622:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
copymat.c: In function 'Nlm_Main':
copymat.c:387:19: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized]
copymat.c:371:10: note: 'prefixLength' was declared here
gcc  -o impala -g -O2 -Wall   -I../include  -L../shlib  profiles.c  -lncbitool \
		-lncbiobj -lncbi -lm 
profiles.c: In function 'Nlm_Main':
profiles.c:1430:16: warning: variable 'spp' set but not used [-Wunused-but-set-variable]
profiles.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
profiles.c: In function 'readSequence.isra.5':
profiles.c:252:25: warning: 'query' may be used uninitialized in this function [-Wuninitialized]
profiles.c: In function 'findMatchingProfiles':
profiles.c:1164:32: warning: 'scaledInitialUngappedLambda' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1164:32: warning: 'correctUngappedLambda' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1161:19: warning: 'LambdaRatio' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1108:13: warning: 'prefixLength' may be used uninitialized in this function [-Wuninitialized]
profiles.c: In function 'Nlm_Main':
profiles.c:1769:16: warning: 'txmatrix' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1767:11: warning: 'matrix' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1775:11: warning: 'search' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1761:21: warning: 'options' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1779:25: warning: 'fake_bsp' may be used uninitialized in this function [-Wuninitialized]
profiles.c:1746:14: warning: 'prune' may be used uninitialized in this function [-Wuninitialized]
gcc  -o megablast -g -O2 -Wall   -I../include  -L../shlib  megablast.c  -lblastapi \
		-lblast -lncbitool -lncbiobj -lncbi 
megablast.c: In function 'BLAST_FillOptions':
megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable]
megablast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o vecscreen -g -O2 -Wall   -I../include  -L../shlib  vecscreen.c  -lncbitool \
		-lncbiobj -lncbi 
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o gil2bin -g -O2 -Wall   -I../include  -L../shlib  gil2bin.c -lncbitool -lncbi
gcc  -o blastclust -g -O2 -Wall   -I../include  -L../shlib  blastclust.c  -lncbitool \
		-lncbiobj -lncbi 
blastclust.c: In function 'Nlm_Main':
blastclust.c:1067:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
blastclust.c:1278:25: warning: variable 'head' set but not used [-Wunused-but-set-variable]
blastclust.c:961:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable]
blastclust.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
blastclust.c: In function 'PrintNeighbors':
blastclust.c:785:39: warning: 'context' may be used uninitialized in this function [-Wuninitialized]
blastclust.c:779:35: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized]
blastclust.c:668:31: warning: 'hsp_info_array' may be used uninitialized in this function [-Wuninitialized]
blastclust.c:763:15: warning: 'hsp' may be used uninitialized in this function [-Wuninitialized]
blastclust.c: In function 'Nlm_Main':
blastclust.c:1333:21: warning: 'progressfp' may be used uninitialized in this function [-Wuninitialized]
gcc  -o rpsblast -g -O2 -Wall   -I../include  -L../shlib  rpsblast.c  -lblastapi \
		-lblast -lncbitool -lncbiobj -lncbi 
rpsblast.c: In function 'Nlm_Main':
rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable]
rpsblast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o asn2xml -g -O2 -Wall   -I../include  -L../shlib  asn2xml.c -lncbiobj -lncbi
gcc  -o debruijn -g -O2 -Wall   -I../include  -L../shlib  debruijn.c -lblast -lncbi
debruijn.c: In function 'Nlm_Main':
debruijn.c:72:12: warning: pointer targets in assignment differ in signedness [-Wpointer-sign]
debruijn.c:80:3: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness [-Wpointer-sign]
/usr/include/string.h:395:15: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *'
debruijn.c:89:10: warning: pointer targets in assignment differ in signedness [-Wpointer-sign]
debruijn.c:106:3: warning: pointer targets in passing argument 1 of 'puts' differ in signedness [-Wpointer-sign]
/usr/include/stdio.h:695:12: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *'
debruijn.c:109:1: warning: control reaches end of non-void function [-Wreturn-type]
gcc  -o asn2idx -g -O2 -Wall   -I../include  -L../shlib  asn2idx.c -lncbiobj -lncbi
gcc  -o sortbyquote -g -O2 -Wall   -I../include  -L../shlib  sortbyquote.c -lncbi
gcc  -o subfuse -g -O2 -Wall   -I../include  -L../shlib  subfuse.c -lncbiobj -lncbi
gcc  -o test_regexp -g -O2 -Wall   -I../include  -L../shlib  pcretest.c -lpcre
gcc  -o demo_regexp -g -O2 -Wall   -I../include  -L../shlib  pcredemo.c -lpcre
gcc  -o demo_regexp_grep -g -O2 -Wall   -I../include  -L../shlib  pcregrep.c -lpcre
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
cd build && rm -f blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust
/usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall  " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
	    CFLAGS1="-c -g -O2 -Wall " VIBLIBS= VIBFLAG= THREAD_OBJ="ncbithr.o" \
	    THREAD_OTHERLIBS="-lpthread" blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
chmod -R ug+rw,o+r .
gcc  -o blast -g -O2 -Wall   -I../include  -L../shlib  blast_driver.c ncbithr.o -lblastapi \
		-lblast -lncbitool -lncbiobj -lncbi -lpthread
gcc  -o blastall -g -O2 -Wall   -I../include  -L../shlib  blastall.c ncbithr.o -lblastapi \
		-lblast -lncbitool -lncbiobj -lncbi -lpthread
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized]
gcc  -o blastall_old -g -O2 -Wall   -I../include  -L../shlib  -DBLASTALL_TOOLS_ONLY blastall.c \
		ncbithr.o -lncbitool -lncbiobj -lncbi -lpthread
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
blastall.c:2931:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function]
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized]
gcc  -o blastpgp -g -O2 -Wall   -I../include  -L../shlib  blastpgp.c ncbithr.o -lncbitool \
		-lncbiobj -lncbi -lpthread
blastpgp.c: In function 'PGPFormatFooter':
blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable]
blastpgp.c: In function 'Nlm_Main':
blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable]
blastpgp.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o seedtop -g -O2 -Wall   -I../include  -L../shlib  seedtop.c ncbithr.o -lncbitool \
		-lncbiobj -lncbi -lpthread
seedtop.c: In function 'Nlm_Main':
seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
seedtop.c:391:22: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
gcc  -o megablast -g -O2 -Wall   -I../include  -L../shlib  megablast.c ncbithr.o -lblastapi \
		-lblast -lncbitool -lncbiobj -lncbi -lpthread
megablast.c: In function 'BLAST_FillOptions':
megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable]
megablast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o rpsblast -g -O2 -Wall   -I../include  -L../shlib  rpsblast.c ncbithr.o -lblastapi \
		-lblast -lncbitool -lncbiobj -lncbi -lpthread
rpsblast.c: In function 'Nlm_Main':
rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable]
rpsblast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o blastclust -g -O2 -Wall   -I../include  -L../shlib  blastclust.c ncbithr.o -lncbitool \
		-lncbiobj -lncbi -lpthread
blastclust.c: In function 'Nlm_Main':
blastclust.c:1067:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
blastclust.c:1278:25: warning: variable 'head' set but not used [-Wunused-but-set-variable]
blastclust.c:961:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable]
blastclust.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
blastclust.c: In function 'PrintNeighbors':
blastclust.c:785:39: warning: 'context' may be used uninitialized in this function [-Wuninitialized]
blastclust.c:779:35: warning: 'query_length' may be used uninitialized in this function [-Wuninitialized]
blastclust.c:668:31: warning: 'hsp_info_array' may be used uninitialized in this function [-Wuninitialized]
blastclust.c:763:15: warning: 'hsp' may be used uninitialized in this function [-Wuninitialized]
blastclust.c: In function 'Nlm_Main':
blastclust.c:1333:21: warning: 'progressfp' may be used uninitialized in this function [-Wuninitialized]
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall  " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
	    CFLAGS1="-c -g -O2 -Wall " THREAD_OBJ="ncbithr.o" \
	    THREAD_OTHERLIBS="-lpthread" \
	    NETENTREZVERSION="2.02c2ASN1SPEC6" BLIB31=libvibnet.a \
	    OGLLIBS= VIBLIBS= VIB="Psequin sbtedit udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl Cn3D"
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \""  ni_lib_.c
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
ni_service.c: In function 's_GenericGetService':
ni_service.c:199:19: warning: unused variable 'c' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
netentr.c: In function 's_NetEntTLEvalCount':
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
netentr.c: In function 's_NetDocSumListGet':
netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable]
netentr.c: In function 's_NetTermListByTerm':
netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable]
netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable]
netentr.c: In function 's_NetTermListByPage':
netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable]
netentr.c: In function 'NetEntTLEval':
netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wuninitialized]
netentr.c: In function 'NetEntTLEvalCount':
netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wuninitialized]
netentr.c:782:16: note: 'atp' was declared here
netentr.c: In function 'NetTermListByTerm':
netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wuninitialized]
netentr.c:1210:9: note: 'next_page' was declared here
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
netlib.c: In function 'BoolExprAsnWrite':
netlib.c:307:16: warning: unused variable 'n' [-Wunused-variable]
netlib.c: At top level:
netlib.c:96:16: warning: 'loaded' defined but not used [-Wunused-variable]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
objneten.c: In function 'EntrezNeighborTextAsnRead':
objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'ChildLinkAsnRead':
objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'EntrezHierarchyAsnRead':
objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'EntrezBlastreqAsnRead':
objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'EntrezExtraInfoAsnRead':
objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'ClusterArticlesAsnRead':
objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'ClusterRespAsnRead':
objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'DateConstraintsAsnRead':
objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c: In function 'DateVectorAsnRead':
objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'GetByFidAsnRead':
objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable]
objneten.c: In function 'GetFeatIdsAsnRead':
objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable]
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Naccentr.c: In function 'EntrezDocSumListGet':
Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Caccentr.c: In function 'EntrezDocSumListGet':
Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
trmlst.c: In function 'FetchFromTermList':
trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
docsum.c: In function 'ImportDocSumForm':
docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable]
docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable]
docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable]
docsum.c: In function 'SaveDocsumProject':
docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
docsum.c: At top level:
docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable]
docsum.c: In function 'FetchLocalBioseq':
docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wuninitialized]
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
objtax1.c: In function 'Taxon1ReqFree':
objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1InfoAsnRead':
objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1ErrorAsnRead':
objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1NameAsnRead':
objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon1DataAsnRead':
objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable]
objtax1.c: In function 'Taxon2DataAsnRead':
objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objtax1.c: In function 'Taxon1RespAsnRead':
objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
taxutil.c: In function 'taxname_match':
taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable]
taxutil.c: In function 'get_lineage':
taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wuninitialized]
taxutil.c: In function 'get_gcode':
taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function 'getIdByOrgRef':
tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable]
tc2proc.c: In function 'bldLineage':
tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable]
tc2proc.c: In function 'storedTaxId':
tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable]
tc2proc.c: In function 'tax1e_needUpdate':
tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable]
tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable]
tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable]
tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable]
tc2proc.c: At top level:
tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function]
tc2proc.c: In function 'mergeOrgMod':
tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
parttree.c: In function 'tax_ptree_addSubtree':
parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
taxblast.c: In function 'TXBHtmlReportInternal':
taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable]
taxblast.c: At top level:
taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function]
taxblast.c: In function 'RDTaxLookupReset':
taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type]
taxblast.c: In function 'TXBGetTargetGi':
taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wuninitialized]
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
id1gen.c: In function 'ID1serverRequestFree':
id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1serverMaxcomplexAsnRead':
id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1SeqHistAsnRead':
id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1SeqEntryInfoAsnRead':
id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1blobInfoAsnRead':
id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable]
id1gen.c: In function 'ID1serverDebugAsnRead':
id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
id1gen.c: In function 'ID1serverBackAsnRead':
id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
id1arch.c: In function 'ID1ArchSeqEntryGet':
id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable]
id1arch.c: In function 'ID1ArchGIGet':
id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable]
id1arch.c: In function 'SeqHistPrintTable':
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat]
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat]
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat]
id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
accid1.c: In function 's_ID1BioseqFetchFunc':
accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable]
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o 
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
objblst3.c: In function 'BlastSearchAsnRead':
objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastRequestFree':
objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'Cutoff2_cutoff2Free':
objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'Cutoff2_cutoff2AsnRead':
objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'Cutoff_cutoffAsnRead':
objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'Cutoff_cutoffFree':
objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastMatrixAsnRead':
objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastDbinfoAsnRead':
objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastMaskAsnRead':
objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastKABlkAsnRead':
objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastErrorAsnRead':
objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastPhialignAsnRead':
objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastDbinfoGetAsnRead':
objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastSeqIdAsnRead':
objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastSequenceAsnRead':
objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastPartsAsnRead':
objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastQueuedAsnRead':
objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastProgressAsnRead':
objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastDeflineAsnRead':
objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'BlastVersionAsnRead':
objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'MegaBlastHitAsnRead':
objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable]
objblst3.c: In function 'MegaBlastResultsAsnRead':
objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c: In function 'BlastResponseAsnRead':
objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c:1421:10: note: 'choice' was declared here
objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objblst3.c:1787:10: note: 'choice' was declared here
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
netblap3.c: In function 'BlastNetBioseqFetchFunc':
netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
netblap3.c: In function 'MegaBlastSeqLocNetCore':
netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
netblap3.c: At top level:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function]
netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function]
netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function]
netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function]
netblap3.c: In function 'BlastNetMatrixToBlastMatrix':
netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wuninitialized]
netblap3.c: In function 'SubmitRequest':
netblap3.c:1763:18: warning: 'bllist' may be used uninitialized in this function [-Wuninitialized]
netblap3.c:1698:19: note: 'bllist' was declared here
netblap3.c: In function 'TraditionalBlastReportEngine':
netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized]
netblap3.c:2576:21: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
objmla.c: In function 'MlaRequestFree':
objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
objmla.c: In function 'TitleMsgAsnRead':
objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
objmla.c: In function 'TitleMsgListAsnRead':
objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
objmla.c: In function 'MlaBackAsnRead':
objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function]
medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function]
medarch.c: In function 'MedArchPubSetCreate':
medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wuninitialized]
medarch.c:1697:5: warning: 'pubSetAtp' may be used uninitialized in this function [-Wuninitialized]
medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wuninitialized]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
gcc  -o Psequin -I. -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \
	-lvibnet -lncbidesk -lblastapi -lnetblast -lncbitool -lncbimla \
	-lvibrant -lncbiobj -lncbi 
sequin1.c: In function 'SQACT_GuessWhatIAm':
sequin1.c:4927:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sequin1.c: In function 'FinishAlignmentRead':
sequin1.c:5239:16: warning: variable 'rsult' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'DeleteSelectedFeatureOrDescriptor':
sequin1.c:8904:19: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable]
sequin1.c:8903:19: warning: variable 'itemID' set but not used [-Wunused-but-set-variable]
sequin1.c:8901:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'WizardTrackerFree':
sequin1.c:15642:20: warning: variable 'sep_next' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'AddCodingRegionFromWizard':
sequin1.c:15711:33: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'SetWizardTrackerBaseSrcQuals':
sequin1.c:15990:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch]
sequin1.c:16037:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch]
sequin1.c: In function 'SetWizardTrackerExtraSrcQuals':
sequin1.c:16136:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch]
sequin1.c:16161:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch]
sequin1.c: In function 'AddWizardFeatureCallback':
sequin1.c:16488:3: warning: enumeration value 'eVirusFeat_None' not handled in switch [-Wswitch]
sequin1.c:16488:3: warning: enumeration value 'eVirusFeat_CDS' not handled in switch [-Wswitch]
sequin1.c: In function 'HaveUniqueCombinationOfQuals':
sequin1.c:17141:15: warning: variable 'num_quals' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'VirusQualsOk':
sequin1.c:20709:5: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch]
sequin1.c: In function 'CulturedSamplesOk':
sequin1.c:20814:5: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch]
sequin1.c: In function 'CheckFeatureQualsUniqueness':
sequin1.c:22415:8: warning: variable 'num_rows' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'WizardFeatureQualsOk':
sequin1.c:22506:11: warning: variable 'num_features' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'TabTableToMultiModTabTable':
sequin1.c:22874:16: warning: unused variable 'bsp' [-Wunused-variable]
sequin1.c: In function 'MultiModTableToTabTable':
sequin1.c:22953:21: warning: variable 'fq' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'ShowAllFeatureQualSequences':
sequin1.c:23510:15: warning: variable 'show_all' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'TabTableLineFromFeature':
sequin1.c:24456:14: warning: unused variable 'vals' [-Wunused-variable]
sequin1.c: In function 'PregenerateFeatures':
sequin1.c:24506:22: warning: unused variable 'problems' [-Wunused-variable]
sequin1.c: In function 'CollectWizardSetType':
sequin1.c:25697:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
sequin1.c:25697:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c: In function 'SequencingMethodToDialog':
sequin1.c:26179:27: warning: variable 'info' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'CollectWizardSourceType':
sequin1.c:26622:5: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
sequin1.c:26622:5: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c:26622:5: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch]
sequin1.c: In function 'HaveWizardSourceType':
sequin1.c:26655:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch]
sequin1.c:26655:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
sequin1.c:26655:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c:26655:3: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch]
sequin1.c: In function 'WizardSourceTypeForm':
sequin1.c:26717:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch]
sequin1.c:26717:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
sequin1.c:26717:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c:26717:3: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch]
sequin1.c: In function 'PopulateAAPopup':
sequin1.c:27745:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
sequin1.c: In function 'CountAmbiProc':
sequin1.c:29126:11: warning: unused variable 'normal' [-Wunused-variable]
sequin1.c: In function 'SetFastaText':
sequin1.c:29946:15: warning: unused variable 'intro' [-Wunused-variable]
sequin1.c: In function 'WizardFASTAFwd':
sequin1.c:30287:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch]
sequin1.c:30287:3: warning: enumeration value 'eWizardType_Viruses' not handled in switch [-Wswitch]
sequin1.c:30287:3: warning: enumeration value 'eWizardType_CulturedSamples' not handled in switch [-Wswitch]
sequin1.c:30287:3: warning: enumeration value 'eWizardType_IGS' not handled in switch [-Wswitch]
sequin1.c:30287:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin1.c:381:13: warning: 'SetSequinAppParamTF' defined but not used [-Wunused-function]
sequin1.c:630:13: warning: 'ReplaceString' defined but not used [-Wunused-function]
sequin1.c:2288:13: warning: 'StyleManagerProc' defined but not used [-Wunused-function]
sequin1.c:7084:16: warning: 'LookupJournalFuncNew' defined but not used [-Wunused-function]
sequin1.c:7668:13: warning: 'FindAlu' defined but not used [-Wunused-function]
sequin1.c:7894:13: warning: 'DefaultMessageProc' defined but not used [-Wunused-function]
sequin1.c:7907:13: warning: 'PreferencesProc' defined but not used [-Wunused-function]
sequin1.c:9051:13: warning: 'TermSelectionFormMessage' defined but not used [-Wunused-function]
sequin1.c:9071:13: warning: 'DocumentSummaryFormMessage' defined but not used [-Wunused-function]
sequin1.c:10824:13: warning: 'ObjMgrReport' defined but not used [-Wunused-function]
sequin1.c:17187:16: warning: 'DoAllSequencesHaveAnExtraQual' defined but not used [-Wunused-function]
sequin1.c:17257:13: warning: 'SeqEntryToModTabTable' defined but not used [-Wunused-function]
sequin1.c:17292:13: warning: 'ModTableToSeqEntryList' defined but not used [-Wunused-function]
sequin1.c:17324:13: warning: 'ClearModifierValues' defined but not used [-Wunused-function]
sequin1.c:18852:16: warning: 'RNAAnnotationWindow' defined but not used [-Wunused-function]
sequin1.c:26802:16: warning: 'WizardCommentForm' defined but not used [-Wunused-function]
sequin1.c:18084:16: warning: 'JumpToMainSubmission' defined but not used [-Wunused-function]
sequin1.c:18185:13: warning: 'GroupChoiceFromName' defined but not used [-Wunused-function]
sequin1.c:18659:16: warning: 'MultOrganelleFeat' defined but not used [-Wunused-function]
sequin1.c:23478:16: warning: 'EqualIgnoreWhiteSpacePunctAndCaps' defined but not used [-Wunused-function]
sequin1.c:24580:16: warning: 'GetLocStart' defined but not used [-Wunused-function]
sequin1.c:24593:16: warning: 'GetLocStop' defined but not used [-Wunused-function]
sequin1.c:24606:13: warning: 'ApplyLocStart' defined but not used [-Wunused-function]
sequin1.c:24622:13: warning: 'ApplyLocStop' defined but not used [-Wunused-function]
sequin1.c:24729:16: warning: 'IsAllATGC' defined but not used [-Wunused-function]
sequin1.c:25266:13: warning: 'SaveVirusFeatureTableChoice' defined but not used [-Wunused-function]
sequin1.c:25864:16: warning: 'WizardStructuredCommentForm' defined but not used [-Wunused-function]
sequin1.c: In function 'TabTableToSeqAnnotList':
sequin1.c:23167:62: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
sequin1.c: In function 'SubtoolDoneFuncEx':
sequin1.c:2018:31: warning: 'bfp' may be used uninitialized in this function [-Wuninitialized]
sequin1.c: In function 'BioseqViewFormMenus':
sequin1.c:8507:23: warning: 'mssgupd_idx' may be used uninitialized in this function [-Wuninitialized]
sequin2.c: In function 'ValidateModifierTableSequenceIDs':
sequin2.c:2845:16: warning: variable 'deleted_rows' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'ImportFastaDialog':
sequin2.c:4568:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'ExportOneRawSequence':
sequin2.c:4830:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'ExportOneDeltaBioseq':
sequin2.c:4929:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'FindBioseqWithValue':
sequin2.c:7883:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'CollectNucleotideProteinAssociations':
sequin2.c:9250:73: warning: variable 'p_msg' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'GetModNameStartFromEqLoc':
sequin2.c:11839:11: warning: variable 'match_quote' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'GetValueFromTitle':
sequin2.c:12403:15: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'PrepareSourceAssistantTableData':
sequin2.c:13654:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'SetOrganismText':
sequin2.c:13856:30: warning: variable 'changed_val' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'ApplyRowListToIDAndTitleEdit':
sequin2.c:15507:32: warning: variable 'next_org' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'EditOrgModColumn':
sequin2.c:16418:26: warning: variable 'row_list' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'ApplyOrgModColumn':
sequin2.c:17267:11: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'PrepareSequenceAssistantTableData':
sequin2.c:18241:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'UpdateIdAndTitleEditDialog':
sequin2.c:19658:50: warning: variable 'has_space' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'SetIDAndTitleEditDialogErrorColumn':
sequin2.c:19808:74: warning: variable 'has_space' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'GetDiffDlgCoord':
sequin2.c:20978:19: warning: variable 'start_col' set but not used [-Wunused-but-set-variable]
sequin2.c:20978:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'DownloadAndDisplay':
sequin2.c:26788:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'DownloadProc':
sequin2.c:26956:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'LoadSecondaryAccessionNumbersPlusHistFromFile':
sequin2.c:28210:17: warning: variable 'need_seqid' set but not used [-Wunused-but-set-variable]
sequin2.c: In function 'RemoveEmptyGenomeProjectIDCallback':
sequin2.c:28350:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sequin2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin2.c:3920:1: warning: 'ReadOneSegSet' defined but not used [-Wunused-function]
sequin2.c:8182:20: warning: 'FindSeqEntryWithTranscriptID' defined but not used [-Wunused-function]
sequin2.c:10754:17: warning: 'GetSeqIdFromSeqEntryPtr' defined but not used [-Wunused-function]
sequin2.c:24973:1: warning: 'SequenceAssistantValidateSegments' defined but not used [-Wunused-function]
sequin2.c:26384:13: warning: 'GetRawBsps' defined but not used [-Wunused-function]
sequin2.c: In function 'SeqEntryPtrToOrgDoc':
sequin2.c:13143:26: warning: 'row_status' may be used uninitialized in this function [-Wuninitialized]
sequin2.c:13033:14: note: 'row_status' was declared here
sequin2.c: In function 'InsertMostUsedFeatureValNodes':
sequin2.c:28480:22: warning: 'new_item' may be used uninitialized in this function [-Wuninitialized]
sequin3.c: In function 'FarToNearProc':
sequin3.c:941:12: warning: variable 'olddelta' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'FixLocus':
sequin3.c:1404:15: warning: variable 'embl_code' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'RemoveGeneXrefsOnBioseqs':
sequin3.c:2667:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'MakeCDS':
sequin3.c:6938:27: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'ConvertOneCDSToMiscFeat':
sequin3.c:9351:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sequin3.c: In function 'SuppressGenesOnFeatures':
sequin3.c:11193:20: warning: variable 'b' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'CheckForExistingMolInfo':
sequin3.c:12866:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'UniqueAndCountValNodeCS':
sequin3.c:13830:17: warning: variable 'curr' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'RemoveNthCDS':
sequin3.c:21998:17: warning: variable 'segCount' set but not used [-Wunused-but-set-variable]
sequin3.c: In function 'InstantiateGapFeatCallback':
sequin3.c:23218:15: warning: variable 'fuzz' set but not used [-Wunused-but-set-variable]
sequin3.c: At top level:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin3.c:2382:13: warning: 'JustTaxonFixup' defined but not used [-Wunused-function]
sequin3.c:2548:13: warning: 'NewRemoveDuplicateFeatsGenes' defined but not used [-Wunused-function]
sequin3.c:4349:13: warning: 'CorrectAlignmentsAfterNToGapConversion' defined but not used [-Wunused-function]
sequin3.c:4381:13: warning: 'RawSeqToDeltaSeq' defined but not used [-Wunused-function]
sequin3.c:4395:13: warning: 'RawSeqToDeltaSeqUnknownLengthGaps' defined but not used [-Wunused-function]
sequin3.c:4412:13: warning: 'RawSeqToDeltaSeqUnknown100LengthGaps' defined but not used [-Wunused-function]
sequin3.c:6006:13: warning: 'EnableFeatureToGeneControlsPopup' defined but not used [-Wunused-function]
sequin3.c:6014:13: warning: 'EnableFeatureToGeneControlsText' defined but not used [-Wunused-function]
sequin3.c:8121:13: warning: 'MultiTransformProc' defined but not used [-Wunused-function]
sequin3.c:12594:13: warning: 'NewMolInfoFieldsApply' defined but not used [-Wunused-function]
sequin3.c:12650:13: warning: 'RibosomalRNAToGenomicDNAMenuItem' defined but not used [-Wunused-function]
sequin3.c:14618:13: warning: 'PrepareTaxListProc' defined but not used [-Wunused-function]
sequin3.c:17573:13: warning: 'DoGeneReset' defined but not used [-Wunused-function]
sequin3.c:18047:1: warning: 'TruncProtsAtStopsExEx' defined but not used [-Wunused-function]
sequin3.c:23365:13: warning: 'AddAllDbxrefsMenuItem' defined but not used [-Wunused-function]
sequin3.c:23410:13: warning: 'NewAligmentViewer' defined but not used [-Wunused-function]
sequin3.c:23543:13: warning: 'TestTax3A' defined but not used [-Wunused-function]
sequin3.c:23549:13: warning: 'TestTax3B' defined but not used [-Wunused-function]
sequin3.c:23908:13: warning: 'ModernizePCRs' defined but not used [-Wunused-function]
sequin3.c:23935:13: warning: 'ModernizeRNAs' defined but not used [-Wunused-function]
sequin3.c:23962:13: warning: 'ModernizeGenes' defined but not used [-Wunused-function]
sequin3.c:24389:13: warning: 'WriteAccessionsCallback' defined but not used [-Wunused-function]
sequin3.c:24720:13: warning: 'TestSegregateByList' defined but not used [-Wunused-function]
sequin4.c: In function 'SplitSegmentedFeatsOnOneSet':
sequin4.c:1692:20: warning: variable 'set_sep' set but not used [-Wunused-but-set-variable]
sequin4.c: In function 'RemoveOneSegSet':
sequin4.c:2363:30: warning: variable 'seg_bssp' set but not used [-Wunused-but-set-variable]
sequin4.c: In function 'NewUpdateSeqAlign':
sequin4.c:3418:20: warning: variable 'bssp' set but not used [-Wunused-but-set-variable]
sequin4.c: In function 'ImportAlignmentForSeqHistInterval':
sequin4.c:3613:21: warning: unused variable 'bssp' [-Wunused-variable]
sequin4.c:3600:21: warning: unused variable 'salp' [-Wunused-variable]
sequin4.c: In function 'GenerateSeqAlignFromSeqEntryMasterOption':
sequin4.c:5300:21: warning: unused variable 'bsp' [-Wunused-variable]
sequin4.c: In function 'LaunchOrfViewer':
sequin4.c:7681:9: warning: variable 'qu' set but not used [-Wunused-but-set-variable]
sequin4.c: In function 'MRnaFromCdsCallback':
sequin4.c:8579:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
sequin4.c: In function 'FindNonACGT':
sequin4.c:10240:21: warning: variable 'len' set but not used [-Wunused-but-set-variable]
sequin4.c: In function 'ConsolidateOrganismNotesProc':
sequin4.c:11481:21: warning: variable 'note_mod' set but not used [-Wunused-but-set-variable]
sequin4.c:11480:21: warning: variable 'note_ssp' set but not used [-Wunused-but-set-variable]
sequin4.c: In function 'GetPubStatus':
sequin4.c:13310:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable]
sequin4.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin4.c:16360:25: warning: 'FeatToDeltaSeq' defined but not used [-Wunused-function]
sequin4.c:3513:18: warning: 'FindBioseqForSeqHist' defined but not used [-Wunused-function]
sequin4.c:7172:13: warning: 'AddOrfListToDoc' defined but not used [-Wunused-function]
sequin4.c:12398:13: warning: 'PubConstraintClearText' defined but not used [-Wunused-function]
sequin4.c:16818:13: warning: 'CleanupTruncateByProtAlignForm' defined but not used [-Wunused-function]
sequin4.c: In function 'ExplodeGroup.isra.99':
sequin4.c:5933:28: warning: 'nucbsp' may be used uninitialized in this function [-Wuninitialized]
sequin4.c: In function 'GroupExplodeFunc':
sequin4.c:6012:18: warning: 'lastEsp' may be used uninitialized in this function [-Wuninitialized]
sequin4.c: In function 'SplitSegmentedFeats':
sequin4.c:1700:27: warning: 'new_frame' may be used uninitialized in this function [-Wuninitialized]
sequin5.c: In function 'GeneExtendFunc':
sequin5.c:262:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'RemoveGBIDsProc':
sequin5.c:1562:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'RemoveGBProtIDsProc':
sequin5.c:1612:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'RemoveGIProc':
sequin5.c:1663:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'SetmRNAFieldString':
sequin5.c:6823:17: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'GetCDSGeneProtField':
sequin5.c:7508:11: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'GetRNAFieldString':
sequin5.c:7903:21: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable]
sequin5.c:7897:14: warning: variable 'rrp' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'SetRNAFieldString':
sequin5.c:8138:17: warning: variable 'rrp' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'BioseqConstrainedFeaturesCallback':
sequin5.c:11568:21: warning: variable 'cop' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'SampleDialogCopy':
sequin5.c:13820:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable]
sequin5.c:13820:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'TestFeatureFieldChoice':
sequin5.c:14341:31: warning: variable 'dlg' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'CreateClickableListForSourceFeats':
sequin5.c:15126:27: warning: variable 'insertion_seq_txt' set but not used [-Wunused-but-set-variable]
sequin5.c:15126:11: warning: variable 'transposon_txt' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'CDSToMiscFeatConvertFunc':
sequin5.c:15286:24: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'GetRegionOpts':
sequin5.c:15424:25: warning: unused variable 'rval' [-Wunused-variable]
sequin5.c: In function 'NewConvertFeaturesByList':
sequin5.c:15594:14: warning: unused variable 'only_pseudo' [-Wunused-variable]
sequin5.c: In function 'FeatureRemoveOrConvertAction':
sequin5.c:15860:25: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'CDSGeneProtAECRDialog':
sequin5.c:18829:25: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'CDSGeneProtConvert':
sequin5.c:19196:18: warning: unused variable 'str_dst' [-Wunused-variable]
sequin5.c: In function 'CDSGeneProtParse':
sequin5.c:19406:18: warning: variable 'avd' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'RNAQualListDialog':
sequin5.c:21868:22: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'GetRNAFeatureList':
sequin5.c:22057:14: warning: variable 'matches' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'RNAQualConvertSwapParseList':
sequin5.c:22189:26: warning: variable 'avd' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'RNAQualEditRemoveList':
sequin5.c:22285:20: warning: unused variable 'rval' [-Wunused-variable]
sequin5.c: In function 'GetGBQualSampleName':
sequin5.c:22998:14: warning: variable 'num_feature_choices' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'ConvertGeneLocusTagToOldLocusTagCallback':
sequin5.c:23233:28: warning: variable 'mp' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'GetCombinedCDSLocationCallback':
sequin5.c:23550:21: warning: unused variable 'fcontext' [-Wunused-variable]
sequin5.c: In function 'NewSegregateBioseqSet':
sequin5.c:26583:22: warning: variable 'p' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'CompareBulkRows':
sequin5.c:28054:8: warning: variable 'col' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'ResortBulkEditorRows':
sequin5.c:28321:20: warning: unused variable 'matches' [-Wunused-variable]
sequin5.c:28318:26: warning: unused variable 'last_inserted' [-Wunused-variable]
sequin5.c: In function 'UpdateBulkEdDisplay':
sequin5.c:29402:17: warning: unused variable 'text_len' [-Wunused-variable]
sequin5.c: In function 'AddColumnToRowList':
sequin5.c:30137:11: warning: unused variable 'm' [-Wunused-variable]
sequin5.c: In function 'ApplyBulkEditCommon':
sequin5.c:30562:23: warning: unused variable 'need_redraw' [-Wunused-variable]
sequin5.c: In function 'CopyAllFieldsFromList':
sequin5.c:30917:8: warning: unused variable 'num_full' [-Wunused-variable]
sequin5.c: In function 'BulkEditorObjectList':
sequin5.c:32879:22: warning: unused variable 'subtype' [-Wunused-variable]
sequin5.c: In function 'BulkEditor':
sequin5.c:32937:22: warning: variable 'field_list' set but not used [-Wunused-but-set-variable]
sequin5.c: In function 'GetSpecificHostCorrectionCategory':
sequin5.c:33691:22: warning: unused variable 'fmt' [-Wunused-variable]
sequin5.c: At top level:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin5.c:13071:25: warning: 'ParseFieldSrcFree' defined but not used [-Wunused-function]
sequin5.c:21552:23: warning: 'AECRRNAQualFree' defined but not used [-Wunused-function]
sequin5.c:27713:13: warning: 'FreeBulkEditorValuesList' defined but not used [-Wunused-function]
sequin5.c:28245:13: warning: 'FlatCopyRows' defined but not used [-Wunused-function]
sequin5.c:28749:28: warning: 'OneFieldBulkEditNew' defined but not used [-Wunused-function]
sequin5.c:29002:28: warning: 'TwoFieldBulkEditNew' defined but not used [-Wunused-function]
sequin5.c:31224:15: warning: 'BulkNucLocationDialog' defined but not used [-Wunused-function]
sequin5.c:31390:16: warning: 'BulkReleaseTrueFalse' defined but not used [-Wunused-function]
sequin5.c:31401:13: warning: 'BulkSetPseudo' defined but not used [-Wunused-function]
sequin5.c:31412:16: warning: 'BulkGetPseudo' defined but not used [-Wunused-function]
sequin5.c:31877:23: warning: 'GetBulkEditorFieldListForFeature' defined but not used [-Wunused-function]
sequin5.c:32179:16: warning: 'BulkSrcGetOrgModDescTF' defined but not used [-Wunused-function]
sequin5.c:32200:13: warning: 'BulkSrcSetOrgModDescTF' defined but not used [-Wunused-function]
sequin5.c: In function 'ResortBulkEditorRows':
sequin5.c:28395:55: warning: 'smallest_pos' may be used uninitialized in this function [-Wuninitialized]
sequin5.c: In function 'ConvertDescriptorFieldCallback':
sequin5.c:6059:18: warning: 'dst_text' may be used uninitialized in this function [-Wuninitialized]
sequin5.c: In function 'ApplyEditConvertRemoveCombo.constprop.182':
sequin5.c:17922:18: warning: 'm' may be used uninitialized in this function [-Wuninitialized]
sequin6.c: In function 'CleanupDeleteByTextConvertForm':
sequin6.c:1489:19: warning: variable 'cfp' set but not used [-Wunused-but-set-variable]
sequin6.c: In function 'RemoveOrgModText':
sequin6.c:3680:35: warning: variable 'next_mod' set but not used [-Wunused-but-set-variable]
sequin6.c: In function 'GapLocationsFromNs':
sequin6.c:5229:15: warning: variable 'seq_ext' set but not used [-Wunused-but-set-variable]
sequin6.c:5228:15: warning: variable 'len' set but not used [-Wunused-but-set-variable]
sequin6.c: In function 'RemoveTerminalNsFromLocation':
sequin6.c:5772:21: warning: unused variable 'seq_offset' [-Wunused-variable]
sequin6.c: In function 'ApplyBioFeatToList':
sequin6.c:6890:23: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable]
sequin6.c: In function 'CopyContactToAuthors':
sequin6.c:8820:16: warning: unused variable 'list' [-Wunused-variable]
sequin6.c: In function 'AddCommentsToList':
sequin6.c:14010:22: warning: unused variable 'comment_len' [-Wunused-variable]
sequin6.c: In function 'RNAWordsFromString':
sequin6.c:14124:32: warning: variable 'last_pos' set but not used [-Wunused-but-set-variable]
sequin6.c:14124:15: warning: variable 'last_hit' set but not used [-Wunused-but-set-variable]
sequin6.c: In function 'FeatureEditorActionGroup':
sequin6.c:15192:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin6.c: In function 'DoPartialFeatureProc':
sequin6.c:15455:16: warning: variable 'dash_at_end' set but not used [-Wunused-but-set-variable]
sequin6.c: In function 'FeatureEditorDoOneAction':
sequin6.c:16047:19: warning: unused variable 'act' [-Wunused-variable]
sequin6.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin6.c:85:8: warning: 'publication_field_alist' defined but not used [-Wunused-variable]
sequin6.c:123:8: warning: 'cds_short_field_alist' defined but not used [-Wunused-variable]
sequin6.c:154:8: warning: 'rnax_short_field_alist' defined but not used [-Wunused-variable]
sequin6.c:225:13: warning: 'PopulateParseQualPopup' defined but not used [-Wunused-function]
sequin6.c:650:16: warning: 'TrimOffEndQuotes' defined but not used [-Wunused-function]
sequin6.c:7713:13: warning: 'SetContactNameFromString' defined but not used [-Wunused-function]
sequin6.c:15251:13: warning: 'DoPseudoFeatureProc' defined but not used [-Wunused-function]
sequin6.c: In function 'CreateFieldSubfieldDlg.constprop.86':
sequin6.c:575:16: warning: 'g2' may be used uninitialized in this function [-Wuninitialized]
sequin7.c: In function 'GeneExtendFunc':
sequin7.c:959:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'FinishConvertingToCDS':
sequin7.c:2767:17: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'SetBestFrame':
sequin7.c:5529:26: warning: variable 'seq_str2' set but not used [-Wunused-but-set-variable]
sequin7.c:5529:16: warning: variable 'seq_str1' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'FixFeatureIntervalSeqLoc':
sequin7.c:7054:17: warning: variable 'tmpsip' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'RNABlastOptionNew':
sequin7.c:7592:17: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'GetSubListForRNAStrandCorrection':
sequin7.c:7872:27: warning: variable 'found_id' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'ShowClickableItemListEx':
sequin7.c:10117:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'ChooseFeaturesForConversion':
sequin7.c:10258:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'GetTableOptions':
sequin7.c:14437:30: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'RemoveCDSandmRNAForGene':
sequin7.c:14720:27: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable]
sequin7.c: In function 'CombineToCreatePseudoGene':
sequin7.c:14803:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sequin7.c: In function 'TrimTaxFix':
sequin7.c:16288:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
sequin7.c: In function 'FindBestNTrimSites':
sequin7.c:17131:21: warning: unused variable 'trim_list' [-Wunused-variable]
sequin7.c: In function 'BarcodeBlastOptionNew':
sequin7.c:17374:17: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
sequin7.c: At top level:
sequin7.c:47:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable]
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin7.c:5092:13: warning: 'RemoveMultipleTitles' defined but not used [-Wunused-function]
sequin7.c:7176:16: warning: 'DoesBioseqMatchStringConstraint' defined but not used [-Wunused-function]
sequin7.c:12852:13: warning: 'RemoveBarcodeKeywordsFromLowTrace' defined but not used [-Wunused-function]
sequin7.c:14966:13: warning: 'FindBadLatLonSourceFeat' defined but not used [-Wunused-function]
sequin7.c:16481:25: warning: 'NTrimIntervalFree' defined but not used [-Wunused-function]
sequin7.c: In function 'CombineToCreatePseudoGene':
sequin7.c:14917:40: warning: 'int_strand' may be used uninitialized in this function [-Wuninitialized]
sequin7.c:14803:48: warning: 'best_right' may be used uninitialized in this function [-Wuninitialized]
sequin7.c:14803:18: warning: 'best_left' may be used uninitialized in this function [-Wuninitialized]
sequin8.c: In function 'PopulateAAPopup':
sequin8.c:1531:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
sequin8.c: In function 'UserObjectPtrToUnverifiedDialog':
sequin8.c:4313:28: warning: unused variable 'status' [-Wunused-variable]
sequin8.c: In function 'SelectBestRepeatsFromList':
sequin8.c:8316:18: warning: variable 'best_len' set but not used [-Wunused-but-set-variable]
sequin8.c:8311:18: warning: variable 'strand2' set but not used [-Wunused-but-set-variable]
sequin8.c:8311:9: warning: variable 'strand1' set but not used [-Wunused-but-set-variable]
sequin8.c: In function 'ExamineAln':
sequin8.c:8832:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
sequin8.c: In function 'GetWindowForReportType':
sequin8.c:15341:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
sequin8.c: In function 'SetWindowForReportType':
sequin8.c:15372:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
sequin8.c: In function 'GetReportConfigName':
sequin8.c:15390:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
sequin8.c: In function 'ScrollToDiscrepancyItem':
sequin8.c:16161:17: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable]
sequin8.c: In function 'GetReportEditButtonProc':
sequin8.c:16944:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
sequin8.c: In function 'GetReportName':
sequin8.c:16968:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
sequin8.c: In function 'SortVnpBymRNAPos':
sequin8.c:19000:22: warning: variable 'mrna2' set but not used [-Wunused-but-set-variable]
sequin8.c:19000:15: warning: variable 'mrna1' set but not used [-Wunused-but-set-variable]
sequin8.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin8.c:452:13: warning: 'ExtendOnePartialFeatureToEndOrGap' defined but not used [-Wunused-function]
sequin8.c:664:13: warning: 'FixReadingFrame' defined but not used [-Wunused-function]
sequin8.c:1890:18: warning: 'SqnGetBioseqGivenSeqLoc' defined but not used [-Wunused-function]
sequin8.c:6725:16: warning: 'CKA_ValidateSeqAlign' defined but not used [-Wunused-function]
sequin8.c:6931:13: warning: 'CKA_ShowAln' defined but not used [-Wunused-function]
sequin8.c:7259:16: warning: 'DoesRowContainPoint' defined but not used [-Wunused-function]
sequin8.c:7711:16: warning: 'DoesFirstRepeatContainAllOtherRepeats' defined but not used [-Wunused-function]
sequin8.c:8745:20: warning: 'GetNewBlastTPAHistAlignPiece' defined but not used [-Wunused-function]
sequin8.c:8768:20: warning: 'GetOldBlastTPAHistAlignPiece' defined but not used [-Wunused-function]
sequin8.c:8830:13: warning: 'ExamineAln' defined but not used [-Wunused-function]
sequin8.c:13113:13: warning: 'ShowAssemblyAlignment' defined but not used [-Wunused-function]
sequin8.c:15651:13: warning: 'VisitFeaturesInViewedBioseqs' defined but not used [-Wunused-function]
sequin8.c:19897:13: warning: 'TrimCDSFortRNAOverlap' defined but not used [-Wunused-function]
sequin8.c:20204:19: warning: 'DivideClickableItemListByEntityID' defined but not used [-Wunused-function]
sequin9.c: In function 'DoVecScreens':
sequin9.c:633:19: warning: variable 'hits' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'AcceptArgumentFormProc':
sequin9.c:1468:18: warning: variable 'choice' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'ExtendBothEnds':
sequin9.c:4777:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'Extend5Prime':
sequin9.c:4845:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'Extend3Prime':
sequin9.c:4905:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'FixProteinString':
sequin9.c:5116:16: warning: variable 'start' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'ShiftStopForLengthChange':
sequin9.c:5193:13: warning: variable 'start' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'ExtendProtein5':
sequin9.c:5386:23: warning: variable 'new_stop' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'PrepareUpdateAlignmentForProtein':
sequin9.c:5914:17: warning: variable 'changed_frame' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'DrawAlignDiffs':
sequin9.c:7508:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable]
sequin9.c:7508:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'MakeAlignDetails':
sequin9.c:7643:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'MakeAlignSequence':
sequin9.c:7692:56: warning: variable 'to' set but not used [-Wunused-but-set-variable]
sequin9.c:7692:50: warning: variable 'from' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'DrawUpdateAlignmentDiffs':
sequin9.c:13384:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable]
sequin9.c:13384:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'MakeAlignmentDetailsPicture':
sequin9.c:13469:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'MakeUpdateAlignmentSequenceString':
sequin9.c:13551:44: warning: variable 'to' set but not used [-Wunused-but-set-variable]
sequin9.c:13551:38: warning: variable 'from' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'SetPreviewSequenceSelectionByPosition':
sequin9.c:15725:46: warning: variable 'curr_scroll' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'DoTestUpdateOneSequence':
sequin9.c:16781:30: warning: variable 'update_bsp' set but not used [-Wunused-but-set-variable]
sequin9.c:16780:30: warning: variable 'update_entityID' set but not used [-Wunused-but-set-variable]
sequin9.c: In function 'UpdateAllSequences':
sequin9.c:17071:30: warning: unused variable 'update_entityID' [-Wunused-variable]
sequin9.c:17070:30: warning: unused variable 'update_bsp' [-Wunused-variable]
sequin9.c: In function 'CleanupUpdateMultiSequence':
sequin9.c:17390:30: warning: unused variable 'entityIDList' [-Wunused-variable]
sequin9.c: In function 'UpdateSequenceViaDownload':
sequin9.c:18717:15: warning: variable 'is_na' set but not used [-Wunused-but-set-variable]
sequin9.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin9.c:215:13: warning: 'TruncateCDS' declared 'static' but never defined [-Wunused-function]
sequin9.c:1405:16: warning: 'StrSaveNoNullEncodeSpaces' defined but not used [-Wunused-function]
sequin9.c:17033:29: warning: 'FeatureUpdateNew' defined but not used [-Wunused-function]
sequin9.c: In function 'TruncateSeqGraphValues':
sequin9.c:3131:48: warning: 'fmax' may be used uninitialized in this function [-Wuninitialized]
sequin9.c:3134:48: warning: 'fmin' may be used uninitialized in this function [-Wuninitialized]
sequin9.c: In function 'UnmatchedSequenceDialog':
sequin9.c:15996:16: warning: 'b' may be used uninitialized in this function [-Wuninitialized]
sequin9.c: In function 'PrepareUpdateAlignmentForProtein':
sequin9.c:6026:37: warning: 'gene_sfp' may be used uninitialized in this function [-Wuninitialized]
sequin10.c: In function 'ApplyTableQuals':
sequin10.c:4530:26: warning: variable 'fqtd' set but not used [-Wunused-but-set-variable]
sequin10.c: In function 'EraseAllFieldsWhenBlank':
sequin10.c:5591:19: warning: unused variable 'columns' [-Wunused-variable]
sequin10.c: In function 'ExternalSourceQualifierTableReader':
sequin10.c:6515:22: warning: variable 'any_valid' set but not used [-Wunused-but-set-variable]
sequin10.c: In function 'LoadFeatureFieldTable':
sequin10.c:8816:24: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin10.c: In function 'OrgModListsMatch':
sequin10.c:10557:14: warning: variable 'found' set but not used [-Wunused-but-set-variable]
sequin10.c: In function 'SubtypeListsMatch':
sequin10.c:10750:14: warning: variable 'found' set but not used [-Wunused-but-set-variable]
sequin10.c: In function 'RetranscribemRNA':
sequin10.c:12121:21: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
sequin10.c: In function 'TrimSequencesByAlignment':
sequin10.c:12516:25: warning: variable 'b' set but not used [-Wunused-but-set-variable]
sequin10.c: In function 'AddOneFeatureBetween':
sequin10.c:12907:14: warning: variable 'seqfeattype' set but not used [-Wunused-but-set-variable]
sequin10.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
sequin10.c:1452:19: warning: 'OrgModTableColumnListFree' defined but not used [-Wunused-function]
sequin10.c:3013:19: warning: 'FreeTableData' defined but not used [-Wunused-function]
sequin10.c:8884:16: warning: 'GetRevSectionSequence' defined but not used [-Wunused-function]
sequin10.c:8902:16: warning: 'GetRevSectionInterval' defined but not used [-Wunused-function]
sequin10.c: In function 'CreateOneProteinId':
sequin10.c:15361:16: warning: 'sip_local' may be used uninitialized in this function [-Wuninitialized]
sequin10.c: In function 'AutoDefBaseFormCommon':
sequin10.c:763:12: warning: 'k' may be used uninitialized in this function [-Wuninitialized]
sequin10.c:716:24: note: 'k' was declared here
: Psequin
gcc  -o sbtedit -I. -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \
	-lncbidesk -lncbitool -lvibrant -lncbiobj -lncbi 
sbtedit.c: In function 'LookupTaxonomyFunc':
sbtedit.c:604:15: warning: variable 'rsult' set but not used [-Wunused-but-set-variable]
sbtedit.c: At top level:
sbtedit.c:48:14: warning: 'date_of_compilation' defined but not used [-Wunused-variable]
sbtedit.c:49:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable]
: sbtedit
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c
udvmain.c: In function 'Nlm_Main':
udvmain.c:232:8: warning: unused variable 'rcL' [-Wunused-variable]
udvmain.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -o udv -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF udvmain.o -lvibnet -lncbidesk \
	-lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi 
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c
ddvmain.c:147:13: warning: 'DDV_myargs' initialized and declared 'extern' [enabled by default]
ddvmain.c:267:16: warning: 'DDV_UseNetwork' defined but not used [-Wunused-function]
ddvmain.c: In function 'Nlm_Main':
ddvmain.c:441:5: warning: 'UseNetwork' may be used uninitialized in this function [-Wuninitialized]
gcc  -o ddv -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF ddvmain.o -lvibnet -lncbidesk -lddvlib \
	-lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi 
gcc  -g -o blastcl3 -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF -DBLAST_CS_API blastall.c \
		-lblastapi -lblast -lnetblast -lncbitool -lncbiobj -lncbi
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
blastall.c:1800:23: warning: variable 'handle_results' set but not used [-Wunused-but-set-variable]
blastall.c:1795:20: warning: unused variable 'index' [-Wunused-variable]
blastall.c:1794:42: warning: unused variable 'seqalignp' [-Wunused-variable]
blastall.c: In function 'Nlm_Main':
blastall.c:2963:13: warning: unused variable 'use_new_engine' [-Wunused-variable]
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
blastall.c:2931:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function]
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2709:36: warning: 'seqalign' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2628:28: warning: 'sap' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wuninitialized]
blastall.c:2816:25: warning: 'xml_aip' may be used uninitialized in this function [-Wuninitialized]
gcc  -g -o taxblast -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF taxblast_main.c \
		-lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool \
		-lncbiobj -lncbi -lm
gcc  -g -o idfetch -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF idfetch.c -lncbiid1 -lncbiobj -lncbi
idfetch.c: In function 'Nlm_Main':
idfetch.c:354:46: warning: variable 'any_type' set but not used [-Wunused-but-set-variable]
idfetch.c:354:28: warning: variable 'dna_type' set but not used [-Wunused-but-set-variable]
idfetch.c: In function 'IdFetch_func':
idfetch.c:828:3: warning: missing braces around initializer [-Wmissing-braces]
idfetch.c:828:3: warning: (near initialization for 'si.data') [-Wmissing-braces]
idfetch.c:835:10: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
idfetch.c: In function 'BEGetUidsFromQuery':
idfetch.c:1089:14: warning: unused variable 'e2rp' [-Wunused-variable]
idfetch.c: In function 'IdFetch_func':
idfetch.c:937:22: warning: 'gi_state' may be used uninitialized in this function [-Wuninitialized]
idfetch.c: In function 'Nlm_Main':
idfetch.c:497:13: warning: 'type_int' may be used uninitialized in this function [-Wuninitialized]
idfetch.c:519:10: warning: 'sip' may be used uninitialized in this function [-Wuninitialized]
gcc  -o bl2seq -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF bl2seq.c -lblastapi -lblast -lncbitool \
		-lncbiid1 -lncbiobj -lncbi
bl2seq.c: In function 'BioseqFromAccession':
bl2seq.c:331:10: warning: unused variable 'dummy_ptr' [-Wunused-variable]
bl2seq.c:330:10: warning: unused variable 'defline' [-Wunused-variable]
bl2seq.c:329:10: warning: unused variable 'buf' [-Wunused-variable]
bl2seq.c:328:17: warning: unused variable 'buf_length' [-Wunused-variable]
bl2seq.c:328:9: warning: unused variable 'retval' [-Wunused-variable]
bl2seq.c:327:15: warning: unused variable 'spp' [-Wunused-variable]
bl2seq.c:322:24: warning: unused variable 'number' [-Wunused-variable]
bl2seq.c: In function 'Main_new':
bl2seq.c:803:21: warning: unused variable 'seqalign' [-Wunused-variable]
bl2seq.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -g -o asn2gb -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF asn2gb.c -lncbitool -lncbiobj -lncbi
asn2gb.c:967:13: warning: 'FreeUnpubAffil' defined but not used [-Wunused-function]
asn2gb.c:1290:13: warning: 'CheckOrder' defined but not used [-Wunused-function]
asn2gb.c: In function 'Nlm_Main':
asn2gb.c:1824:9: warning: 'entityID' may be used uninitialized in this function [-Wuninitialized]
asn2gb.c:1774:15: note: 'entityID' was declared here
gcc  -o tbl2asn -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF tbl2asn.c -lncbitool -lncbiobj -lncbi
tbl2asn.c: In function 'ProcessOneAnnot':
tbl2asn.c:2529:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
tbl2asn.c: In function 'MakeOneRnaTitle':
tbl2asn.c:5123:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable]
tbl2asn.c: In function 'FindSingleNucleotideOrNucProtSetInBioseqInSet':
tbl2asn.c:6932:30: warning: variable 'single_result' set but not used [-Wunused-but-set-variable]
tbl2asn.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
tbl2asn.c:2617:16: warning: 'ExceptionExplainsMismatch' defined but not used [-Wunused-function]
tbl2asn.c: In function 'DBLinkFieldsConflict':
tbl2asn.c:2130:40: warning: 'i' may be used uninitialized in this function [-Wuninitialized]
tbl2asn.c:2092:18: note: 'i' was declared here
tbl2asn.c: In function 'ProcessOneNuc':
tbl2asn.c:2213:27: warning: 'uop' may be used uninitialized in this function [-Wuninitialized]
tbl2asn.c:2205:17: note: 'uop' was declared here
gcc  -g -o gene2xml -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF gene2xml.c -lncbiobj -lncbi
gcc  -g -o entrez2 -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF entrez2.c -lncbidesk \
		-lncbiobj -lvibrant -lncbi 
entrez2.c: In function 'Nlm_Main':
entrez2.c:866:12: warning: variable 'server' set but not used [-Wunused-but-set-variable]
entrez2.c:864:12: warning: variable 'port' set but not used [-Wunused-but-set-variable]
entrez2.c:863:12: warning: variable 'path' set but not used [-Wunused-but-set-variable]
entrez2.c: At top level:
entrez2.c:724:13: warning: 'AboutProc' defined but not used [-Wunused-function]
: entrez2
gcc  -g -o gbseqget -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF gbseqget.c -lncbiobj -lncbi
gcc  -g -o asn2all -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiobj -lncbi \
		-lpthread
asn2all.c: In function 'DoLockFarComponents':
asn2all.c:67:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable]
asn2all.c:67:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable]
gcc  -o asn2asn -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF asn2asn.c -lncbiobj -lncbi
gcc  -g -o asn2fsa -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF asn2fsa.c ncbithr.o \
		-lncbitool -lncbiobj -lncbi -lpthread
asn2fsa.c: In function 'AddBspToList':
asn2fsa.c:216:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
asn2fsa.c: In function 'DoLockFarComponents':
asn2fsa.c:406:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable]
asn2fsa.c:406:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable]
gcc  -g -o asndisc -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF asndisc.c ncbithr.o -lncbiid1 \
		-lncbitool -lncbiobj -lncbi -lpthread
asndisc.c: In function 'ProcessMultipleRecord':
asndisc.c:728:19: warning: variable 'memory_usage' set but not used [-Wunused-but-set-variable]
asndisc.c:726:19: warning: variable 'detailed_report' set but not used [-Wunused-but-set-variable]
asndisc.c:722:19: warning: variable 'subcit' set but not used [-Wunused-but-set-variable]
gcc  -o asnmacro -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF asnmacro.c -lblastapi -lblast -lncbitool \
		-lncbiobj -lncbi
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
../include/asnmacro.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
../include/asnmacro.h:1325:23: warning: 'avn' defined but not used [-Wunused-variable]
../include/asnmacro.h:1326:19: warning: 'at' defined but not used [-Wunused-variable]
../include/asnmacro.h:1327:21: warning: 'amp' defined but not used [-Wunused-variable]
asnmacro.c:147:20: warning: 'GlobalAlign2Seq' defined but not used [-Wunused-function]
asnmacro.c: In function 'AsnIoFromOutputStream':
asnmacro.c:233:14: warning: 'aip' may be used uninitialized in this function [-Wuninitialized]
gcc  -g -o asnval -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF asnval.c ncbithr.o -lncbiobj -lncbi \
		-lpthread
asnval.c: In function 'DoLockFarComponents':
asnval.c:556:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable]
asnval.c:556:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable]
asnval.c: In function 'ReportBadTaxID':
asnval.c:1049:5: warning: zero-length gnu_printf format string [-Wformat-zero-length]
asnval.c:1058:5: warning: zero-length gnu_printf format string [-Wformat-zero-length]
gcc  -o cleanasn -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF cleanasn.c -lncbitool -lncbiobj -lncbi
cleanasn.c: In function 'JournalIsPresent':
cleanasn.c:8001:14: warning: variable 'is_issn' set but not used [-Wunused-but-set-variable]
cleanasn.c: In function 'RemoveGIProc':
cleanasn.c:8305:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
cleanasn.c: At top level:
cleanasn.c:3854:13: warning: 'NormalizeSegSetTitle' defined but not used [-Wunused-function]
cleanasn.c:3905:13: warning: 'CountParts' defined but not used [-Wunused-function]
cleanasn.c:4063:13: warning: 'PrintPartsTitle' defined but not used [-Wunused-function]
cleanasn.c:4076:13: warning: 'PrintSegSeqTitleBefore' defined but not used [-Wunused-function]
cleanasn.c:4096:13: warning: 'PrintSegSeqTitleAfter' defined but not used [-Wunused-function]
cleanasn.c:4116:13: warning: 'FindOneCds' defined but not used [-Wunused-function]
cleanasn.c:6613:19: warning: 'DuplicateStringList' defined but not used [-Wunused-function]
cleanasn.c:7647:13: warning: 'DoUnpublishedReport' defined but not used [-Wunused-function]
cleanasn.c:9911:16: warning: 'PvtStrToLong' defined but not used [-Wunused-function]
cleanasn.c:9952:13: warning: 'AccessionToGi' defined but not used [-Wunused-function]
cleanasn.c: In function 'RemoveFeatEvInf':
cleanasn.c:585:9: warning: 'nextqual' may be used uninitialized in this function [-Wuninitialized]
gcc  -g -o insdseqget -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF insdseqget.c -lncbiobj -lncbi
gcc  -g -o nps2gps -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF nps2gps.c -lncbitool -lncbiobj -lncbi
nps2gps.c: In function 'LclMakeOneRnaTitle':
nps2gps.c:417:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable]
nps2gps.c: In function 'LoopThroughCDSs':
nps2gps.c:910:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
nps2gps.c: At top level:
nps2gps.c:584:17: warning: 'MakeIdFromLocusTag' defined but not used [-Wunused-function]
gcc  -o spidey -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF spideymain.c -lncbiid1 -lncbitool \
		 -lncbiobj -lncbi
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
gcc  -g -o trna2sap -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF trna2sap.c -lncbiobj -lncbi
trna2sap.c: In function 'ProcessOneRecord':
trna2sap.c:290:28: warning: unused variable 'entityID' [-Wunused-variable]
trna2sap.c: In function 'Nlm_Main':
trna2sap.c:460:12: warning: variable 'tsp' set but not used [-Wunused-but-set-variable]
gcc  -g -o trna2tbl -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF trna2tbl.c
trna2tbl.c: In function 'RunTrnaScan':
trna2tbl.c:142:13: warning: unused variable 'str' [-Wunused-variable]
trna2tbl.c:139:13: warning: unused variable 'speed' [-Wunused-variable]
trna2tbl.c:127:13: warning: unused variable 'cmmd' [-Wunused-variable]
trna2tbl.c: At top level:
trna2tbl.c:232:1: warning: return type defaults to 'int' [-Wreturn-type]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c
cn3dmain.c: In function 'OpenMimeFile':
cn3dmain.c:237:5: warning: "/*" within comment [-Wcomment]
cn3dmain.c: In function 'NetConfigureProc':
cn3dmain.c:267:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable]
cn3dmain.c: In function 'Cn3D_PrintImage':
cn3dmain.c:288:10: warning: variable 'pmldVec' set but not used [-Wunused-but-set-variable]
cn3dmain.c:284:11: warning: unused variable 'pdnmlFirst' [-Wunused-variable]
cn3dmain.c: In function 'Nlm_Main':
cn3dmain.c:334:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable]
cn3dmain.c: At top level:
cn3dmain.c:246:25: warning: 'seqedprocs' defined but not used [-Wunused-variable]
gcc  -c -g -O2 -Wall  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \""  -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF  netentcf.c   -o netentcf
gcc  -o Cn3D -g -O2 -Wall   -I../include  -L../shlib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3dOGL -lncbidesk \
		-lddvlib -lncbimmdb -lncbiNacc -lnetentr \
		-lvibrantOGL -lncbiobj -lncbi  
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_auto_test -a
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory `/«PKGBUILDDIR»'
install -d debian/tmp/usr/lib/arm-linux-gnueabihf
install -m 644 lib/* shlib/*.so.6.1.20120620 debian/tmp/usr/lib/arm-linux-gnueabihf
for x in ncbiacc ncbiCacc netentr; do \
	    rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20120620 && \
	    ln -s libncbiNacc.so.6 \
	        debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \
	    ln -s libncbiNacc.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \
	done
for x in ncbicn3d vibrant; do \
	    rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20120620 && \
	    ln -s lib${x}OGL.so.6 \
	        debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \
	    ln -s lib${x}OGL.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \
	done
rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/libregexp.*
cd debian/tmp/usr/lib/arm-linux-gnueabihf && \
	for f in *.so.6.1.20120620; do \
	    base=`basename $f .so.6.1.20120620` && \
	    ln -s $f $base.so.6 && \
	    ln -s $f $base.so; \
	done
install -d debian/tmp/usr/include/ncbi
cp -LRp include/* debian/tmp/usr/include/ncbi
cd debian/tmp/usr/include/ncbi && \
            rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h
find debian/tmp/usr/include -type f | xargs chmod 644
install -d debian/tmp/usr/bin
install `find build -type f -perm +111 -print` debian/tmp/usr/bin
rm -f debian/tmp/usr/bin/*test*
rm -f debian/tmp/usr/bin/*demo*
rm -f debian/tmp/usr/bin/dosimple
rm -f debian/tmp/usr/bin/ncbisort
rm -f debian/tmp/usr/bin/cdscan
rm -f debian/tmp/usr/bin/entrcmd
rm -f debian/tmp/usr/bin/blast.REAL
mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0
mv debian/tmp/usr/bin/blast debian/tmp/usr/bin/blast2
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_install -a
   debian/rules override_dh_installdocs
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_installdocs
install -m 644 config/README \
	    debian/libncbi6/usr/share/doc/libncbi6/README.config
install -m 644 network/nsclilib/readme \
	    debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg
install -m 644 doc/fa2htgs/README \
	    debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs
install -m 644 sequin/README \
	    debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin
make[1]: Leaving directory `/«PKGBUILDDIR»'
   debian/rules override_dh_installchangelogs
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_installchangelogs -k README
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_installexamples -a
   debian/rules override_dh_installman
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_link # otherwise runs too late to influence debian/installman
debian/installman blast2
syntax error at debian/installman line 22, near "$dir qw(doc/man debian/man)"
syntax error at debian/installman line 54, near "}"
Execution of debian/installman aborted due to compilation errors.
make[1]: *** [override_dh_installman] Error 255
make[1]: Leaving directory `/«PKGBUILDDIR»'
make: *** [binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130912-2145

Finished
────────

E: Build failure (dpkg-buildpackage died)

┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 623792
Build-Time: 5621
Distribution: jessie-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 328
Job: ncbi-tools6_6.1.20120620-5
Machine Architecture: armhf
Package: ncbi-tools6
Package-Time: 6137
Source-Version: 6.1.20120620-5
Space: 623792
Status: attempted
Version: 6.1.20120620-5
────────────────────────────────────────────────────────────────────────────────
Finished at 20130912-2145
Build needed 01:42:17, 623792k disc space
Raspbian Package Auto-Building

Build log for ncbi-tools6 (6.1.20120620-5) on armhf
