nanopolish →
0.5.0-1+b2 →
armhf → 2017-07-29 08:14:24
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| nanopolish 0.5.0-1+b2 (armhf) Sat, 29 Jul 2017 08:08:25 +0000 |
+==============================================================================+
Package: nanopolish
Version: 0.5.0-1+b2
Source Version: 0.5.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-a7fa76ef-2df8-4a9a-aa68-a60af6c5387c' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [11.9 MB]
Fetched 22.0 MB in 8s (2660 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'nanopolish' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/nanopolish.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/nanopolish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1742 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main nanopolish 0.5.0-1 (dsc) [2011 B]
Get:2 http://172.17.0.1/private buster-staging/main nanopolish 0.5.0-1 (tar) [1734 kB]
Get:3 http://172.17.0.1/private buster-staging/main nanopolish 0.5.0-1 (diff) [6332 B]
Fetched 1742 kB in 0s (3669 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/nanopolish-qA6eeu/nanopolish-0.5.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/nanopolish-qA6eeu' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-AH4oS4/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-AH4oS4/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-AH4oS4/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (5960 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 772 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14837 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), zlib1g-dev, libfast5-dev, libhts-dev, libeigen3-dev
Filtered Build-Depends: debhelper (>= 9), zlib1g-dev, libfast5-dev, libhts-dev, libeigen3-dev
dpkg-deb: building package 'sbuild-build-depends-nanopolish-dummy' in '/<<BUILDDIR>>/resolver-AH4oS4/apt_archive/sbuild-build-depends-nanopolish-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-nanopolish-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Sources [515 B]
Get:5 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ Packages [597 B]
Fetched 2445 B in 0s (6382 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install nanopolish build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libbsd0
libcroco3 libcurl3-gnutls libeigen3-dev libfast5-dev
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgssapi-krb5-2
libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhts-dev libhts2 libicu57
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libsz2 libtimedate-perl libtool
libxml2 m4 man-db pkg-config po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libeigen3-doc libmrpt-dev krb5-doc krb5-user libhdf5-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libbsd0
libcroco3 libcurl3-gnutls libeigen3-dev libfast5-dev
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgssapi-krb5-2
libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhts-dev libhts2 libicu57
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libsz2 libtimedate-perl libtool
libxml2 m4 man-db pkg-config po-debconf
sbuild-build-depends-nanopolish-dummy zlib1g-dev
0 upgraded, 61 newly installed, 0 to remove and 1 not upgraded.
Need to get 25.8 MB of archives.
After this operation, 90.7 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-AH4oS4/apt_archive ./ sbuild-build-depends-nanopolish-dummy 0.invalid.0 [800 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.30-1 [222 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.30-1 [105 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.30-1 [63.4 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-2+b1 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3 [66.9 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3 [98.1 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libldap-common all 2.4.44+dfsg-8 [85.3 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-8 [195 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2 [736 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.52.3-1 [2576 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-2+b1 [1220 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.2.5 [961 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-3 [35.9 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libaec0 armhf 0.3.2-1 [19.4 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.24.0-1 [70.4 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.17.0-5 [42.0 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.52.1-5 [259 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.4-2 [842 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libgfortran3 armhf 6.4.0-1+rpi1 [166 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libsz2 armhf 0.3.2-1 [5836 B]
Get:51 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-3 [1203 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.1-2 [109 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.1-2 [181 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.1-2 [56.1 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 0.3.2-1 [17.6 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-3 [118 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-3 [2093 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libfast5-dev all 0.5.8-1 [23.3 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libhts2 armhf 1.4.1-5 [247 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libhts-dev armhf 1.4.1-5 [338 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libaec0:armhf (0.3.2-1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.1-2) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.24.0-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up libldap-common (2.4.44+dfsg-8) ...
Setting up libpsl5:armhf (0.17.0-5) ...
Setting up libgfortran3:armhf (6.4.0-1+rpi1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.52.3-1) ...
No schema files found: doing nothing.
Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up gettext-base (0.19.8.1-2+b1) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-3) ...
Setting up libmagic-mgc (1:5.30-1) ...
Setting up libmagic1:armhf (1:5.30-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Setting up pkg-config (0.29-4) ...
Setting up libssh2-1:armhf (1.8.0-1) ...
Processing triggers for libc-bin (2.24-12) ...
Setting up autotools-dev (20161112.1) ...
Setting up libldap-2.4-2:armhf (2.4.44+dfsg-8) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.1-2) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up hdf5-helpers (1.10.0-patch1+docs-3) ...
Setting up autopoint (0.19.8.1-2) ...
Setting up libsz2:armhf (0.3.2-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up libhdf5-100:armhf (1.10.0-patch1+docs-3) ...
Setting up gettext (0.19.8.1-2+b1) ...
Setting up libeigen3-dev (3.3.4-2) ...
Setting up libaec-dev:armhf (0.3.2-1) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.30-1) ...
Setting up libkrb5support0:armhf (1.15.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libjpeg-dev (1:1.5.1-2) ...
Setting up automake (1:1.15.1-2) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up libk5crypto3:armhf (1.15.1-2) ...
Setting up libhdf5-cpp-100:armhf (1.10.0-patch1+docs-3) ...
Setting up po-debconf (1.0.20) ...
Setting up libhdf5-dev (1.10.0-patch1+docs-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libkrb5-3:armhf (1.15.1-2) ...
Setting up libfast5-dev (0.5.8-1) ...
Setting up libgssapi-krb5-2:armhf (1.15.1-2) ...
Setting up libcurl3-gnutls:armhf (7.52.1-5) ...
Setting up libhts2:armhf (1.4.1-5) ...
Setting up libhts-dev:armhf (1.4.1-5) ...
Setting up dh-autoreconf (14) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.2.5) ...
Setting up sbuild-build-depends-nanopolish-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-12) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1+rpi1 gcc-6_6.4.0-1+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.5~beta1+b3 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1+rpi1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.2.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20170606-3 g++_4:6.3.0-4d1 g++-6_6.4.0-1+rpi1 gcc_4:6.3.0-4d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6_6.4.0-1+rpi1 gcc-6-base_6.4.0-1+rpi1 gcc-7-base_7.1.0-9+rpi1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hdf5-helpers_1.10.0-patch1+docs-3 hostname_3.18 init-system-helpers_1.48 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libaec-dev_0.3.2-1 libaec0_0.3.2-1 libapparmor1_2.11.0-6 libapt-pkg5.0_1.5~beta1+b3 libarchive-zip-perl_1.59-1 libasan3_6.4.0-1+rpi1 libassuan0_2.4.3-2 libatomic1_7.1.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1 libblkid1_2.29.2-2+rpi1 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-9+rpi1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libcurl3-gnutls_7.52.1-5 libdb5.3_5.3.28-12 libdbus-1-3_1.10.20-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm2_2.4.81-2+rpi1 libeigen3-dev_3.3.4-2 libfakeroot_1.21-3.1 libfast5-dev_0.5.8-1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-6-dev_6.4.0-1+rpi1 libgcc1_1:7.1.0-9+rpi1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libgfortran3_6.4.0-1+rpi1 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-9+rpi1 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15.1-2 libhdf5-100_1.10.0-patch1+docs-3 libhdf5-cpp-100_1.10.0-patch1+docs-3 libhdf5-dev_1.10.0-patch1+docs-3 libhogweed4_3.3-1 libhts-dev_1.4.1-5 libhts2_1.4.1-5 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2 libisl15_0.18-1 libjpeg-dev_1:1.5.1-2 libjpeg62-turbo_1:1.5.1-2 libjpeg62-turbo-dev_1:1.5.1-2 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-8 libldap-common_2.4.44+dfsg-8 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnghttp2-14_1.24.0-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-7 libperl5.26_5.26.0-4 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.30-2 libprocps6_2:3.3.12-3 libpsl5_0.17.0-5 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.4-2 libssh2-1_1.8.0-1 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 libsystemd0_233-10 libsz2_0.3.2-1 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-9+rpi1 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libxml2_2.9.4+dfsg1-3 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-3 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-4 perl-base_5.26.0-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-4 pinentry-curses_1.0.0-2 pkg-config_0.29-4 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-nanopolish-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 systemd_233-10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_233-10 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Aug 12 07:07:36 2016 UTC
gpgv: using RSA key 59B2306F3AF9DDC1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./nanopolish_0.5.0-1.dsc
dpkg-source: info: extracting nanopolish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking nanopolish_0.5.0.orig.tar.gz
dpkg-source: info: unpacking nanopolish_0.5.0-1.debian.tar.xz
dpkg-source: info: applying adjust-include-path.patch
dpkg-source: info: applying compiler-flags.patch
dpkg-source: info: applying external-libs.patch
dpkg-source: info: applying add-shebang-to-script.patch
dpkg-source: info: applying fix-ftbfs-with-gcc6.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying fast5-0.5.6.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.5.0-1+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-a7fa76ef-2df8-4a9a-aa68-a60af6c5387c
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package nanopolish
dpkg-buildpackage: info: source version 0.5.0-1+b2
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build nanopolish-0.5.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Makefile:94: .depend: No such file or directory
rm -f ./.depend
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -MM src/alignment/nanopolish_alignment_db.cpp src/alignment/nanopolish_anchor.cpp src/alignment/nanopolish_eventalign.cpp src/common/logsum.cpp src/common/nanopolish_alphabet.cpp src/common/nanopolish_common.cpp src/common/nanopolish_fast5_map.cpp src/common/nanopolish_iupac.cpp src/common/nanopolish_klcs.cpp src/common/nanopolish_model_names.cpp src/common/nanopolish_variant.cpp src/hmm/nanopolish_duration_model.cpp src/hmm/nanopolish_pore_model_set.cpp src/hmm/nanopolish_profile_hmm.cpp src/hmm/nanopolish_transition_parameters.cpp src/nanopolish_call_variants.cpp src/nanopolish_consensus.cpp src/nanopolish_getmodel.cpp src/nanopolish_haplotype.cpp src/nanopolish_methyltest.cpp src/nanopolish_methyltrain.cpp src/nanopolish_poremodel.cpp src/nanopolish_scorereads.cpp src/nanopolish_squiggle_read.cpp src/nanopolish_train_poremodel_from_basecalls.cpp src/training_core.cpp src/thirdparty/stdaln.c > ./.depend;
rm -f nanopolish nanopolish_test src/alignment/nanopolish_alignment_db.o src/alignment/nanopolish_anchor.o src/alignment/nanopolish_eventalign.o src/common/logsum.o src/common/nanopolish_alphabet.o src/common/nanopolish_common.o src/common/nanopolish_fast5_map.o src/common/nanopolish_iupac.o src/common/nanopolish_klcs.o src/common/nanopolish_model_names.o src/common/nanopolish_variant.o src/hmm/nanopolish_duration_model.o src/hmm/nanopolish_pore_model_set.o src/hmm/nanopolish_profile_hmm.o src/hmm/nanopolish_transition_parameters.o src/nanopolish_call_variants.o src/nanopolish_consensus.o src/nanopolish_getmodel.o src/nanopolish_haplotype.o src/nanopolish_methyltest.o src/nanopolish_methyltrain.o src/nanopolish_poremodel.o src/nanopolish_scorereads.o src/nanopolish_squiggle_read.o src/nanopolish_train_poremodel_from_basecalls.o src/training_core.o src/thirdparty/stdaln.o src/main/nanopolish.o src/test/nanopolish_test.o
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f .depend
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_auto_configure -a -O--parallel
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Makefile:94: .depend: No such file or directory
rm -f ./.depend
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -MM src/alignment/nanopolish_alignment_db.cpp src/alignment/nanopolish_anchor.cpp src/alignment/nanopolish_eventalign.cpp src/common/logsum.cpp src/common/nanopolish_alphabet.cpp src/common/nanopolish_common.cpp src/common/nanopolish_fast5_map.cpp src/common/nanopolish_iupac.cpp src/common/nanopolish_klcs.cpp src/common/nanopolish_model_names.cpp src/common/nanopolish_variant.cpp src/hmm/nanopolish_duration_model.cpp src/hmm/nanopolish_pore_model_set.cpp src/hmm/nanopolish_profile_hmm.cpp src/hmm/nanopolish_transition_parameters.cpp src/nanopolish_call_variants.cpp src/nanopolish_consensus.cpp src/nanopolish_getmodel.cpp src/nanopolish_haplotype.cpp src/nanopolish_methyltest.cpp src/nanopolish_methyltrain.cpp src/nanopolish_poremodel.cpp src/nanopolish_scorereads.cpp src/nanopolish_squiggle_read.cpp src/nanopolish_train_poremodel_from_basecalls.cpp src/training_core.cpp src/thirdparty/stdaln.c > ./.depend;
g++ -o src/main/nanopolish.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/main/nanopolish.cpp
g++ -o src/alignment/nanopolish_alignment_db.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/alignment/nanopolish_alignment_db.cpp
g++ -o src/alignment/nanopolish_anchor.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/alignment/nanopolish_anchor.cpp
g++ -o src/alignment/nanopolish_eventalign.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/alignment/nanopolish_eventalign.cpp
src/alignment/nanopolish_eventalign.cpp: In function 'void emit_sam_header(samFile*, const bam_hdr_t*)':
src/alignment/nanopolish_eventalign.cpp:225:27: warning: ignoring return value of 'int sam_hdr_write(samFile*, const bam_hdr_t*)', declared with attribute warn_unused_result [-Wunused-result]
sam_hdr_write(fp, hdr);
^
src/alignment/nanopolish_eventalign.cpp: In function 'void emit_event_alignment_sam(htsFile*, const SquiggleRead&, const bam_hdr_t*, const bam1_t*, const std::vector<EventAlignment>&)':
src/alignment/nanopolish_eventalign.cpp:364:43: warning: ignoring return value of 'int sam_write1(samFile*, const bam_hdr_t*, const bam1_t*)', declared with attribute warn_unused_result [-Wunused-result]
sam_write1(fp, base_hdr, event_record);
^
g++ -o src/common/logsum.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/logsum.cpp
g++ -o src/common/nanopolish_alphabet.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/nanopolish_alphabet.cpp
In file included from src/common/nanopolish_alphabet.cpp:10:0:
src/common/nanopolish_alphabet.h:237:29: warning: inline function 'virtual bool Alphabet::contains_all(const char*) const' used but never defined
virtual inline bool contains_all(const char *bases) const = 0;
^~~~~~~~~~~~
g++ -o src/common/nanopolish_common.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/nanopolish_common.cpp
g++ -o src/common/nanopolish_fast5_map.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/nanopolish_fast5_map.cpp
In file included from /usr/include/c++/6/algorithm:62:0,
from src/alignment/nanopolish_alignment_db.cpp:10:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
g++ -o src/common/nanopolish_iupac.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/nanopolish_iupac.cpp
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from src/alignment/nanopolish_alignment_db.cpp:10:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Distance = int; _Tp = Variant; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
g++ -o src/common/nanopolish_klcs.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/nanopolish_klcs.cpp
In file included from /usr/include/c++/6/algorithm:62:0,
from src/alignment/nanopolish_alignment_db.cpp:10:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
g++ -o src/common/nanopolish_model_names.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/nanopolish_model_names.cpp
g++ -o src/common/nanopolish_variant.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/common/nanopolish_variant.cpp
g++ -o src/hmm/nanopolish_duration_model.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/hmm/nanopolish_duration_model.cpp
g++ -o src/hmm/nanopolish_pore_model_set.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/hmm/nanopolish_pore_model_set.cpp
/usr/include/c++/6/bits/stl_algo.h: In member function 'std::vector<Variant> AlignmentDB::get_variants_in_region(const string&, int, int, double, int) const':
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
g++ -o src/hmm/nanopolish_profile_hmm.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/hmm/nanopolish_profile_hmm.cpp
g++ -o src/hmm/nanopolish_transition_parameters.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/hmm/nanopolish_transition_parameters.cpp
In file included from /usr/include/c++/6/map:60:0,
from src/hmm/nanopolish_pore_model_set.h:13,
from src/hmm/nanopolish_pore_model_set.cpp:10:
/usr/include/c++/6/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, PoreModel>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, PoreModel> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, PoreModel> >]':
/usr/include/c++/6/bits/stl_tree.h:1928:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, PoreModel>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, PoreModel> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, PoreModel> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, PoreModel> >}' will change in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -o src/nanopolish_call_variants.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_call_variants.cpp
g++ -o src/nanopolish_consensus.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_consensus.cpp
g++ -o src/nanopolish_getmodel.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_getmodel.cpp
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_call_variants.cpp:17:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
g++ -o src/nanopolish_haplotype.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_haplotype.cpp
g++ -o src/nanopolish_methyltest.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_methyltest.cpp
In file included from /usr/include/c++/6/vector:69:0,
from src/nanopolish_call_variants.cpp:12:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Tp = Variant; _Alloc = std::allocator<Variant>]':
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type 'std::vector<Variant>::iterator {aka __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type 'std::vector<Variant>::iterator {aka __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = std::_Rb_tree_const_iterator<Variant>; _Tp = Variant; _Alloc = std::allocator<Variant>]':
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type 'std::vector<Variant>::iterator {aka __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >}' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<Variant>' will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<Variant>' will change in GCC 7.1
g++ -o src/nanopolish_methyltrain.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_methyltrain.cpp
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_call_variants.cpp:17:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_algo.h:1818:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from src/nanopolish_call_variants.cpp:17:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Distance = int; _Tp = Variant; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_call_variants.cpp:17:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Variant&, const Variant&)>]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_consensus.cpp:17:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const IndexedPathScore&, const IndexedPathScore&)>]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PathCons&, const PathCons&)>]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >; _Pointer = PathCons*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PathCons&, const PathCons&)>]':
/usr/include/c++/6/bits/stl_algo.h:2702:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__merge_sort_with_buffer(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2702:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2702:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2692:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + __chunk_size, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2695:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
In file included from /usr/include/c++/6/vector:64:0,
from src/nanopolish_call_variants.cpp:12:
/usr/include/c++/6/bits/stl_vector.h: In function 'Haplotype call_variants_for_region(const string&, int, int)':
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type 'std::vector<Variant>::iterator {aka __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >}' will change in GCC 7.1
_M_range_insert(__pos, __first, __last, _IterCategory());
^~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type 'std::vector<Variant>::iterator {aka __gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >}' will change in GCC 7.1
_M_range_insert(__pos, __first, __last, _IterCategory());
^~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<Variant>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<Variant>' will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator<Variant>' will change in GCC 7.1
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_call_variants.cpp:17:
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Variant*, std::vector<Variant> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >]':
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__rotate(_RandomAccessIterator __first,
^~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const IndexedPathScore&, const IndexedPathScore&)>]':
/usr/include/c++/6/bits/stl_algo.h:2473:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__merge_without_buffer(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2473:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2473:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__iterator_category(__first));
^
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2515:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __first_cut, __new_middle,
^~~
/usr/include/c++/6/bits/stl_algo.h:2515:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2515:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2517:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__new_middle, __second_cut, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2517:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2517:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const IndexedPathScore&, const IndexedPathScore&)>]':
/usr/include/c++/6/bits/stl_algo.h:2758:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__inplace_stable_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2758:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >; _Distance = int; _Pointer = IndexedPathScore*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const IndexedPathScore&, const IndexedPathScore&)>]':
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__merge_adaptive(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__iterator_category(__first));
^
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2460:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
^~~
/usr/include/c++/6/bits/stl_algo.h:2460:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2460:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2462:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_adaptive(__new_middle, __second_cut, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2462:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2462:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function '_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = IndexedPathScore*; _OutputIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const IndexedPathScore&, const IndexedPathScore&)>]':
/usr/include/c++/6/bits/stl_algo.h:2636:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__move_merge(_InputIterator __first1, _InputIterator __last1,
^~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >; _Pointer = IndexedPathScore*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const IndexedPathScore&, const IndexedPathScore&)>]':
/usr/include/c++/6/bits/stl_algo.h:2702:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__merge_sort_with_buffer(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2702:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2692:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + __chunk_size, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2695:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2671:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__result = std::__move_merge(__first, __first + __step_size,
^~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2679:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__move_merge(__first, __first + __step_size,
^~~
/usr/include/c++/6/bits/stl_algo.h:2679:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >; _Pointer = IndexedPathScore*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const IndexedPathScore&, const IndexedPathScore&)>]':
/usr/include/c++/6/bits/stl_algo.h:2729:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
__stable_sort_adaptive(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2729:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2729:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2738:4: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
^~~
/usr/include/c++/6/bits/stl_algo.h:2740:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
^~~
/usr/include/c++/6/bits/stl_algo.h:2745:4: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2746:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2748:7: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2748:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2748:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function '_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >]':
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__rotate(_RandomAccessIterator __first,
^~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1325:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__merge_without_buffer(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PathCons&, const PathCons&)>]':
/usr/include/c++/6/bits/stl_algo.h:2473:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__merge_without_buffer(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2473:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2473:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__iterator_category(__first));
^
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2515:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __first_cut, __new_middle,
^~~
/usr/include/c++/6/bits/stl_algo.h:2515:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2515:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2517:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_without_buffer(__new_middle, __second_cut, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2517:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2517:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PathCons&, const PathCons&)>]':
/usr/include/c++/6/bits/stl_algo.h:2758:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__inplace_stable_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2758:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function '_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >; _BidirectionalIterator2 = PathCons*; _Distance = int]':
/usr/include/c++/6/bits/stl_algo.h:2370:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__rotate_adaptive(_BidirectionalIterator1 __first,
^~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2370:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2370:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__iterator_category(__first));
^
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1441:40: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >; _Distance = int; _Pointer = PathCons*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PathCons&, const PathCons&)>]':
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__merge_adaptive(_BidirectionalIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2412:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2459:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__buffer_size);
^
/usr/include/c++/6/bits/stl_algo.h:2459:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2459:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2460:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_adaptive(__first, __first_cut, __new_middle, __len11,
^~~
/usr/include/c++/6/bits/stl_algo.h:2460:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2460:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2462:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_adaptive(__new_middle, __second_cut, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2462:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2462:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
g++ -o src/nanopolish_poremodel.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_poremodel.cpp
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >; _Pointer = PathCons*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PathCons&, const PathCons&)>]':
/usr/include/c++/6/bits/stl_algo.h:2729:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
__stable_sort_adaptive(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:2729:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2738:4: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__stable_sort_adaptive(__first, __middle, __buffer,
^~~
/usr/include/c++/6/bits/stl_algo.h:2740:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__stable_sort_adaptive(__middle, __last, __buffer,
^~~
/usr/include/c++/6/bits/stl_algo.h:2745:4: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_sort_with_buffer(__first, __middle, __buffer, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2746:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_sort_with_buffer(__middle, __last, __buffer, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2748:7: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__merge_adaptive(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2748:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2748:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h: In function 'void score_paths(PathConsVector&, const std::vector<HMMInputData>&)':
/usr/include/c++/6/bits/stl_algo.h:4879:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__stable_sort_adaptive(__first, __last, __buf.begin(),
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2763:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2767:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __middle, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2768:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__inplace_stable_sort(__middle, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
std::__merge_without_buffer(__first, __middle, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:2769:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<IndexedPathScore*, std::vector<IndexedPathScore> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:4877:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__inplace_stable_sort(__first, __last, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:4879:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<PathCons*, std::vector<PathCons> >' will change in GCC 7.1
std::__stable_sort_adaptive(__first, __last, __buf.begin(),
^~~
g++ -o src/nanopolish_scorereads.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_scorereads.cpp
g++ -o src/nanopolish_squiggle_read.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_squiggle_read.cpp
g++ -o src/nanopolish_train_poremodel_from_basecalls.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/nanopolish_train_poremodel_from_basecalls.cpp
g++ -o src/training_core.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/training_core.cpp
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from src/nanopolish_train_poremodel_from_basecalls.cpp:18:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_train_poremodel_from_basecalls.cpp:18:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In function 'PoreModel initialize_pore_model(const std::vector<std::vector<std::vector<MinimalStateTrainingData> > >&, size_t)':
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
gcc -o src/thirdparty/stdaln.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fPIC src/thirdparty/stdaln.c
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_squiggle_read.cpp:9:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1837:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
g++ -o src/test/nanopolish_test.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/test/nanopolish_test.cpp
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from src/nanopolish_squiggle_read.cpp:9:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from src/nanopolish_squiggle_read.cpp:9:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In member function 'void SquiggleRead::load_from_fast5(const string&, uint32_t)':
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
/usr/include/c++/6/bits/stl_algo.h:1882:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h:1887:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' will change in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
^~~
g++ -o nanopolish -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/main/nanopolish.o src/alignment/nanopolish_alignment_db.o src/alignment/nanopolish_anchor.o src/alignment/nanopolish_eventalign.o src/common/logsum.o src/common/nanopolish_alphabet.o src/common/nanopolish_common.o src/common/nanopolish_fast5_map.o src/common/nanopolish_iupac.o src/common/nanopolish_klcs.o src/common/nanopolish_model_names.o src/common/nanopolish_variant.o src/hmm/nanopolish_duration_model.o src/hmm/nanopolish_pore_model_set.o src/hmm/nanopolish_profile_hmm.o src/hmm/nanopolish_transition_parameters.o src/nanopolish_call_variants.o src/nanopolish_consensus.o src/nanopolish_getmodel.o src/nanopolish_haplotype.o src/nanopolish_methyltest.o src/nanopolish_methyltrain.o src/nanopolish_poremodel.o src/nanopolish_scorereads.o src/nanopolish_squiggle_read.o src/nanopolish_train_poremodel_from_basecalls.o src/training_core.o src/thirdparty/stdaln.o -lz -lrt -lhdf5 -lhts -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial
g++ -o nanopolish_test -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O3 -std=c++11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -fPIC src/test/nanopolish_test.o src/alignment/nanopolish_alignment_db.o src/alignment/nanopolish_anchor.o src/alignment/nanopolish_eventalign.o src/common/logsum.o src/common/nanopolish_alphabet.o src/common/nanopolish_common.o src/common/nanopolish_fast5_map.o src/common/nanopolish_iupac.o src/common/nanopolish_klcs.o src/common/nanopolish_model_names.o src/common/nanopolish_variant.o src/hmm/nanopolish_duration_model.o src/hmm/nanopolish_pore_model_set.o src/hmm/nanopolish_profile_hmm.o src/hmm/nanopolish_transition_parameters.o src/nanopolish_call_variants.o src/nanopolish_consensus.o src/nanopolish_getmodel.o src/nanopolish_haplotype.o src/nanopolish_methyltest.o src/nanopolish_methyltrain.o src/nanopolish_poremodel.o src/nanopolish_scorereads.o src/nanopolish_squiggle_read.o src/nanopolish_train_poremodel_from_basecalls.o src/training_core.o src/thirdparty/stdaln.o -lz -lrt -lhdf5 -lhts -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--parallel
make -j4 test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
./nanopolish_test
===============================================================================
All tests passed (421 assertions in 4 test cases)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --parallel
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
dh_auto_install -a -O--parallel
dh_install -a -O--parallel
dh_installdocs -a -O--parallel
dh_installchangelogs -a -O--parallel
dh_installexamples -a -O--parallel
dh_installman -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/nanopolish/usr/bin/nanopolish contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/nanopolish/usr/lib/nanopolish/nanopolish_test contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nanopolish/usr/bin/nanopolish debian/nanopolish/usr/lib/nanopolish/nanopolish_test were not linked against librt.so.1 (they use none of the library's symbols)
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: package nanopolish: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package nanopolish: unused substitution variable ${perl:Depends}
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'nanopolish-dbgsym' in '../nanopolish-dbgsym_0.5.0-1+b2_armhf.deb'.
dpkg-deb: building package 'nanopolish' in '../nanopolish_0.5.0-1+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../nanopolish_0.5.0-1+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build nanopolish-0.5.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-07-29T08:14:22Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
nanopolish_0.5.0-1+b2_armhf.changes:
------------------------------------
Format: 1.8
Date: Fri, 12 Aug 2016 00:05:16 -0700
Source: nanopolish (0.5.0-1)
Binary: nanopolish
Binary-Only: yes
Architecture: armhf
Version: 0.5.0-1+b2
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
nanopolish - consensus caller for nanopore sequencing data
Changes:
nanopolish (0.5.0-1+b2) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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50970d940c8ea22db4c409825371a7a5 1842664 science optional nanopolish_0.5.0-1+b2_armhf.deb
29845dd368a4b7f3600ffa41ceaa49b9 5894 science optional nanopolish_0.5.0-1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
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nanopolish-dbgsym_0.5.0-1+b2_armhf.deb
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new debian package, version 2.0.
size 9541840 bytes: control archive=552 bytes.
481 bytes, 13 lines control
212 bytes, 2 lines md5sums
Package: nanopolish-dbgsym
Source: nanopolish (0.5.0-1)
Version: 0.5.0-1+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 9726
Depends: nanopolish (= 0.5.0-1+b2)
Section: debug
Priority: extra
Homepage: https://github.com/jts/nanopolish
Description: Debug symbols for nanopolish
Build-Ids: 1b05414bfd8aab5a85c748dc5a05ae2d2e617397 c4a26d015b7b87f884a4411bb062588a4193ac48
drwxr-xr-x root/root 0 2016-08-12 07:05 ./
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/1b/
-rw-r--r-- root/root 4362204 2016-08-12 07:05 ./usr/lib/debug/.build-id/1b/05414bfd8aab5a85c748dc5a05ae2d2e617397.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/c4/
-rw-r--r-- root/root 5585540 2016-08-12 07:05 ./usr/lib/debug/.build-id/c4/a26d015b7b87f884a4411bb062588a4193ac48.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-08-12 07:05 ./usr/share/doc/nanopolish-dbgsym -> nanopolish
nanopolish_0.5.0-1+b2_armhf.deb
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new debian package, version 2.0.
size 1842664 bytes: control archive=1040 bytes.
602 bytes, 14 lines control
1062 bytes, 14 lines md5sums
Package: nanopolish
Source: nanopolish (0.5.0-1)
Version: 0.5.0-1+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3189
Depends: libc6 (>= 2.23), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libhdf5-100, libhts2, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Suggests: python, perl, make
Section: science
Priority: optional
Homepage: https://github.com/jts/nanopolish
Description: consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus
calling of nanopore genome sequencing data.
drwxr-xr-x root/root 0 2016-08-12 07:05 ./
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/bin/
-rwxr-xr-x root/root 742188 2016-08-12 07:05 ./usr/bin/nanopolish
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/nanopolish/
-rwxr-xr-x root/root 603 2016-08-11 16:14 ./usr/lib/nanopolish/consensus-preprocess.pl
-rwxr-xr-x root/root 1044 2016-08-12 07:05 ./usr/lib/nanopolish/consensus.make
-rw-r--r-- root/root 2022 2016-08-11 16:14 ./usr/lib/nanopolish/dropmodel.py
-rw-r--r-- root/root 476 2016-08-11 16:14 ./usr/lib/nanopolish/nanopolish_makerange.py
-rw-r--r-- root/root 2827 2016-08-11 16:14 ./usr/lib/nanopolish/nanopolish_merge.py
-rwxr-xr-x root/root 1074020 2016-08-12 07:05 ./usr/lib/nanopolish/nanopolish_test
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/nanopolish/
-rw-r--r-- root/root 190 2016-01-19 07:41 ./usr/share/doc/nanopolish/README.Debian
-rw-r--r-- root/root 3574 2016-08-11 16:14 ./usr/share/doc/nanopolish/README.md
-rw-r--r-- root/root 221 2016-08-12 07:05 ./usr/share/doc/nanopolish/changelog.Debian.armhf.gz
-rw-r--r-- root/root 499 2016-08-12 07:05 ./usr/share/doc/nanopolish/changelog.Debian.gz
-rw-r--r-- root/root 4067 2016-08-12 03:33 ./usr/share/doc/nanopolish/copyright
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/nanopolish/examples/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/nanopolish/examples/data/
-rw-r--r-- root/root 1413462 2016-08-11 16:14 ./usr/share/doc/nanopolish/examples/data/LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch8_file30_strand.fast5.gz
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/man/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/man/man1/
-rw-r--r-- root/root 329 2016-08-12 07:05 ./usr/share/man/man1/nanopolish.1.gz
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 93680
Build-Time: 208
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 131
Job: nanopolish_0.5.0-1
Machine Architecture: armhf
Package: nanopolish
Package-Time: 357
Source-Version: 0.5.0-1
Space: 93680
Status: successful
Version: 0.5.0-1+b2
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Finished at 2017-07-29T08:14:22Z
Build needed 00:05:57, 93680k disk space