Raspbian Package Auto-Building

Build log for mrtrix3 (3.0~rc3+git135-g2b8e7d0c2-3) on armhf

mrtrix33.0~rc3+git135-g2b8e7d0c2-3armhf → 2019-03-05 22:13:11

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd

+==============================================================================+
| mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3 (armhf)  Sat, 02 Mar 2019 11:04:54 +0000 |
+==============================================================================+

Package: mrtrix3
Version: 3.0~rc3+git135-g2b8e7d0c2-3
Source Version: 3.0~rc3+git135-g2b8e7d0c2-3
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-8b7d2175-fe38-47d4-a716-a2b3ef71785b' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.1 MB]
Fetched 24.4 MB in 29s (848 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'mrtrix3' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/mrtrix3.git
Please use:
git clone https://salsa.debian.org/med-team/mrtrix3.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 17.6 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3 (dsc) [2296 B]
Get:2 http://172.17.0.1/private buster-staging/main mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3 (tar) [17.5 MB]
Get:3 http://172.17.0.1/private buster-staging/main mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3 (diff) [42.0 kB]
Fetched 17.6 MB in 5s (3611 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mrtrix3-6j8ItB/mrtrix3-3.0~rc3+git135-g2b8e7d0c2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mrtrix3-6j8ItB' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ARwJtY/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ARwJtY/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ARwJtY/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3087 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
  libgpg-error-l10n libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 42 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (43.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15799 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev | libgsl0-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc
Filtered Build-Depends: debhelper (>= 9~), liboctave-dev, libgsl-dev, libeigen3-dev, libqt4-opengl-dev, python, pkg-config, libgtkmm-2.4-dev, libgtkglext1-dev, imagemagick, matlab-support-dev, bc
dpkg-deb: building package 'sbuild-build-depends-mrtrix3-dummy' in '/<<BUILDDIR>>/resolver-ARwJtY/apt_archive/sbuild-build-depends-mrtrix3-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-mrtrix3-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Sources [580 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ Packages [655 B]
Fetched 2568 B in 1s (3730 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install mrtrix3 build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
  libgpg-error-l10n libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils
  cpp-8 debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core g++-8 gcc-8 gcc-8-base gettext
  gettext-base gfortran gfortran-8 gir1.2-atk-1.0 gir1.2-freedesktop
  gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0
  gir1.2-pango-1.0 groff-base gtk-update-icon-cache hdf5-helpers
  hicolor-icon-theme icu-devtools imagemagick imagemagick-6-common
  imagemagick-6.q16 intltool-debian libaec-dev libaec0 libamd2
  libarchive-zip-perl libarpack2 libasan5 libasound2 libasound2-data
  libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5 libatkmm-1.6-dev
  libatomic1 libaudio2 libavahi-client3 libavahi-common-data libavahi-common3
  libblas-dev libblas3 libblkid-dev libbsd0 libbtf1 libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libcairomm-1.0-1v5
  libcairomm-1.0-dev libcamd2 libcc1-0 libccolamd2 libcholmod3 libcolamd2
  libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie1 libde265-0
  libdouble-conversion1 libdrm-amdgpu1 libdrm-dev libdrm-etnaviv1
  libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1
  libdrm-tegra0 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2
  libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3
  libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3
  libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev
  libfribidi-dev libfribidi0 libgbm1 libgcc-8-dev libgcc1 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev
  libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libgl1 libgl1-mesa-dev
  libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0
  libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin
  libglibmm-2.4-1v5 libglibmm-2.4-dev libglpk40 libglu1-mesa libglu1-mesa-dev
  libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgomp1
  libgraphicsmagick++-q16-12 libgraphicsmagick-q16-3 libgraphite2-3
  libgraphite2-dev libgsl-dev libgsl23 libgslcblas0 libgtk2.0-0
  libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev
  libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0 libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhdf5-103
  libhdf5-cpp-103 libhdf5-dev libheif1 libice-dev libice6 libicu-dev libicu63
  libinput-bin libinput10 libjack-jackd2-0 libjbig0 libjpeg-dev
  libjpeg62-turbo libjpeg62-turbo-dev libjpeg8 libklu1 liblapack-dev
  liblapack3 liblcms2-2 libllvm7 liblqr-1-0 libltdl7 liblzo2-2 libmagic-mgc
  libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5 libmng1
  libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14 liboctave-dev
  liboctave6 libogg0 libopengl0 libopenjp2-7 libopus0 libpango-1.0-0
  libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangomm-1.4-1v5
  libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev libpangoxft-1.0-0
  libpcre16-3 libpcre2-16-0 libpcre3-dev libpcre32-3 libpcrecpp0v5
  libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libportaudio2 libpsl5
  libpthread-stubs0-dev libpython-stdlib libpython2-stdlib
  libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
  libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1
  libqscintilla2-qt5-13 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative
  libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network
  libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script
  libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml
  libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5
  libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5widgets5
  libqtcore4 libqtdbus4 libqtgui4 libreadline-dev librsvg2-2 librsvg2-common
  librtmp1 libsamplerate0 libselinux1-dev libsensors-config libsensors5
  libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev
  libsm6 libsndfile1 libssh2-1 libstdc++-8-dev libstdc++6
  libsuitesparseconfig5 libsz2 libtext-unidecode-perl libthai-data libthai0
  libtiff5 libtool libubsan1 libuchardet0 libumfpack5 libvorbis0a
  libvorbisenc2 libwacom-common libwacom2 libwayland-client0
  libwayland-server0 libwebp6 libwebpmux3 libwmf0.2-7 libx11-6 libx11-data
  libx11-dev libx11-xcb-dev libx11-xcb1 libx265-165 libxau-dev libxau6
  libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0
  libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1
  libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev
  libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0
  libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1
  libxcb-util0 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1
  libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev
  libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6
  libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6
  libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev
  libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db
  matlab-support-dev mesa-common-dev mime-support octave octave-common
  pango1.0-tools pkg-config po-debconf python python-minimal python2
  python2-minimal python2.7 python2.7-minimal python3 python3-distutils
  python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus
  qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n shared-mime-info
  tex-common texinfo ucf uuid-dev x11-common x11proto-composite-dev
  x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev
  x11proto-input-dev x11proto-randr-dev x11proto-xext-dev
  x11proto-xf86vidmode-dev x11proto-xinerama-dev xkb-data xorg-sgml-doctools
  xtrans-dev zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation gcc-8-locales dh-make gcc-8-doc libstdc++6-8-dbg libgcc1-dbg
  libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg
  libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc
  libgfortran5-dbg libcoarrays-dev groff imagemagick-doc autotrace cups-bsd
  | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps
  libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig
  ufraw-batch xdg-utils libasound2-plugins alsa-utils libatkmm-1.6-doc nas
  liblapack-doc libcairo2-doc libcairomm-1.0-doc cups-common libeigen3-doc
  libmpfrc++-dev libfftw3-doc libglib2.0-doc libglibmm-2.4-doc
  libgtkmm-3.0-dev libiodbc2-dev default-libmysqlclient-dev graphicsmagick-dbg
  libgraphite2-utils gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
  gvfs libgtk2.0-doc libgtkmm-2.4-doc libhdf5-doc libice-doc icu-doc jackd2
  liblcms2-utils libmagickcore-6.q16-6-extra ncurses-doc opus-tools
  libpango1.0-doc libqscintilla2-doc libqt4-declarative-folderlistmodel
  libqt4-declarative-gestures libqt4-declarative-particles
  libqt4-declarative-shaders qt4-qmlviewer firebird-dev libpq-dev
  libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev
  qt5-image-formats-plugins qtwayland5 libicu57 qt4-qtconfig readline-doc
  librsvg2-bin lm-sensors libsigc++-2.0-doc libsm-doc libstdc++-8-doc
  libtool-doc gcj-jdk libwmf0.2-7-gtk libx11-doc libxcb-doc libxext-doc
  libxt-doc m4-doc apparmor less www-browser libmail-box-perl python-doc
  python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk
  python3-venv python3.7-venv python3.7-doc texlive-base texlive-latex-base
  texlive-generic-recommended texinfo-doc-nonfree texlive-fonts-recommended
Recommended packages:
  curl | wget | lynx libmagickcore-6.q16-6-extra ghostscript netpbm
  libarchive-cpio-perl freetype2-doc xdg-user-dirs gsfonts libgail-common
  libgtk2.0-bin libpng-tools publicsuffix libqt4-sql-mysql | libqt4-sql-odbc
  | libqt4-sql-psql | libqt4-sql-sqlite | libqt4-sql-sqlite2
  qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite
  | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds
  | libqt5sql5-ibase qt-at-spi libltdl-dev libwacom-bin libwww-perl
  libxml-sax-expat-perl gnuplot-qt | gnuplot-x11 | gnuplot-nox
  libopenblas-base | libatlas3-base pstoedit epstool default-jre-headless
  octave-doc fonts-freefont-otf libmail-sendmail-perl
The following NEW packages will be installed:
  adwaita-icon-theme autoconf automake autopoint autotools-dev bc bsdmainutils
  debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8
  gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0
  gir1.2-gtk-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base
  gtk-update-icon-cache hdf5-helpers hicolor-icon-theme icu-devtools
  imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian
  libaec-dev libaec0 libamd2 libarchive-zip-perl libarpack2 libasound2
  libasound2-data libatk1.0-0 libatk1.0-data libatk1.0-dev libatkmm-1.6-1v5
  libatkmm-1.6-dev libaudio2 libavahi-client3 libavahi-common-data
  libavahi-common3 libblas-dev libblas3 libblkid-dev libbsd0 libbtf1
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcairomm-1.0-1v5 libcairomm-1.0-dev libcamd2 libccolamd2 libcholmod3
  libcolamd2 libcroco3 libcups2 libcurl3-gnutls libcxsparse3 libdatrie1
  libde265-0 libdouble-conversion1 libdrm-amdgpu1 libdrm-dev libdrm-etnaviv1
  libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1
  libdrm-tegra0 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2
  libexpat1-dev libffi-dev libfftw3-bin libfftw3-dev libfftw3-double3
  libfftw3-single3 libfile-stripnondeterminism-perl libflac8 libfltk-gl1.3
  libfltk1.3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev
  libfribidi-dev libfribidi0 libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin
  libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgfortran-8-dev libgfortran5
  libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps1.4
  libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin libglib2.0-data
  libglib2.0-dev libglib2.0-dev-bin libglibmm-2.4-1v5 libglibmm-2.4-dev
  libglpk40 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev
  libglvnd0 libglx-mesa0 libglx0 libgraphicsmagick++-q16-12
  libgraphicsmagick-q16-3 libgraphite2-3 libgraphite2-dev libgsl-dev libgsl23
  libgslcblas0 libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1
  libgtkglext1-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev libgudev-1.0-0
  libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b
  libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheif1 libice-dev libice6
  libicu-dev libicu63 libinput-bin libinput10 libjack-jackd2-0 libjbig0
  libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjpeg8 libklu1
  liblapack-dev liblapack3 liblcms2-2 libllvm7 liblqr-1-0 libltdl7 liblzo2-2
  libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmetis5
  libmng1 libmount-dev libmpdec2 libmtdev1 libncurses-dev libnghttp2-14
  liboctave-dev liboctave6 libogg0 libopengl0 libopenjp2-7 libopus0
  libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0
  libpangomm-1.4-1v5 libpangomm-1.4-dev libpangox-1.0-0 libpangox-1.0-dev
  libpangoxft-1.0-0 libpcre16-3 libpcre2-16-0 libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev
  libportaudio2 libpsl5 libpthread-stubs0-dev libpython-stdlib
  libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
  libpython3.7-minimal libpython3.7-stdlib libqhull7 libqrupdate1
  libqscintilla2-qt5-13 libqscintilla2-qt5-l10n libqt4-dbus libqt4-declarative
  libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network
  libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script
  libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml
  libqt4-xmlpatterns libqt5core5a libqt5dbus5 libqt5gui5 libqt5help5
  libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5widgets5
  libqtcore4 libqtdbus4 libqtgui4 libreadline-dev librsvg2-2 librsvg2-common
  librtmp1 libsamplerate0 libselinux1-dev libsensors-config libsensors5
  libsepol1-dev libsigc++-2.0-0v5 libsigc++-2.0-dev libsigsegv2 libsm-dev
  libsm6 libsndfile1 libssh2-1 libsuitesparseconfig5 libsz2
  libtext-unidecode-perl libthai-data libthai0 libtiff5 libtool libuchardet0
  libumfpack5 libvorbis0a libvorbisenc2 libwacom-common libwacom2
  libwayland-client0 libwayland-server0 libwebp6 libwebpmux3 libwmf0.2-7
  libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libx265-165
  libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0
  libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0
  libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0
  libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev
  libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev
  libxcb-sync1 libxcb-util0 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0
  libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1
  libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6
  libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev
  libxi6 libxinerama-dev libxinerama1 libxkbcommon-x11-0 libxkbcommon0
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6
  libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxshmfence-dev
  libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 m4 man-db
  matlab-support-dev mesa-common-dev mime-support octave octave-common
  pango1.0-tools pkg-config po-debconf python python-minimal python2
  python2-minimal python2.7 python2.7-minimal python3 python3-distutils
  python3-lib2to3 python3-minimal python3.7 python3.7-minimal qdbus
  qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n
  sbuild-build-depends-mrtrix3-dummy shared-mime-info tex-common texinfo ucf
  uuid-dev x11-common x11proto-composite-dev x11proto-core-dev
  x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-input-dev
  x11proto-randr-dev x11proto-xext-dev x11proto-xf86vidmode-dev
  x11proto-xinerama-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
  cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
  libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 413 newly installed, 0 to remove and 29 not upgraded.
Need to get 201 MB/204 MB of archives.
After this operation, 874 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ARwJtY/apt_archive ./ sbuild-build-depends-mrtrix3-dummy 0.invalid.0 [940 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-21+rpi1 [37.9 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-21+rpi1 [190 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-21+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-21+rpi1 [64.0 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-21+rpi1 [8100 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-21+rpi1 [316 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-21+rpi1 [103 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-21+rpi1 [7463 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-21+rpi1 [1545 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-21+rpi1 [595 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-21+rpi1 [7218 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-21+rpi1 [6786 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-21+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-2 [782 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libjpeg8 armhf 8d1-2 [108 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libfftw3-double3 armhf 3.3.8-2 [429 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libde265-0 armhf 1.0.3-1+rpi1+b9 [180 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libx265-165 armhf 2.9-4 [517 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libheif1 armhf 1.3.2-1+b1 [106 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.3-1 [1077 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf liblqr-1-0 armhf 0.4.2-2.1 [23.1 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-9 [387 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7 armhf 2.3.0-1.1 [137 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-4 [236 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-6 [7973 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf imagemagick-6-common all 8:6.9.10.23+dfsg-2 [200 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libmagickcore-6.q16-6 armhf 8:6.9.10.23+dfsg-2 [1598 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libmagickwand-6.q16-6 armhf 8:6.9.10.23+dfsg-2 [423 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libmng1 armhf 1.0.10+dfsg-3.1 [164 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libmtdev1 armhf 1.1.5-1 [20.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.16~rc1-1 [394 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.16~rc1-1 [1090 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-4 [41.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-4 [21.0 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.62 [37.2 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.16~rc1-1 [1844 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.16~rc1-1 [304 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-4 [20.8 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-4 [20.8 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-4 [41.6 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-4 [22.8 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2-2 [582 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2-2 [1455 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.2-1 [36.6 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.2-2 [1662 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.2-2 [323 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.2-1 [20.0 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.7.2-1 [61.5 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf tex-common all 6.10 [53.0 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3.1 [62.1 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-2 [170 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-2 [35.9 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-2 [50.9 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-6 [168 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libpangox-1.0-0 armhf 0.0.2-5 [37.7 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libxcb-util0 armhf 0.3.8-3 [21.5 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf bc armhf 1.07.1-2 [101 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-2 [242 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-2 [109 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.35-2 [65.1 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf shared-mime-info armhf 1.10-1 [762 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-common all 2.38.0+dfsg-7 [315 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.38.0+dfsg-7 [158 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf gtk-update-icon-cache armhf 3.24.5-1 [80.5 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-2 [602 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.13-7 [69.6 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.3.1-1 [1144 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-6 [61.9 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-6 [51.6 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf librsvg2-2 armhf 2.44.10-1+rpi1 [958 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf librsvg2-common armhf 2.44.10-1+rpi1 [22.8 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf adwaita-icon-theme all 3.30.1-1 [11.7 MB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.1-1 [19.7 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.1-1 [13.0 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.176-1 [158 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf debhelper all 12.1 [1015 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-21+rpi1 [206 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-21+rpi1 [248 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-21+rpi1 [7196 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:117 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.3-2 [78.8 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.3-2 [143 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libatk1.0-data all 2.30.0-2 [145 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libatk1.0-0 armhf 2.30.0-2 [42.7 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf gir1.2-atk-1.0 armhf 2.30.0-2 [25.3 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libcairo-gobject2 armhf 1.16.0-2 [123 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf gir1.2-freedesktop armhf 1.58.3-2 [20.3 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf gir1.2-gdkpixbuf-2.0 armhf 2.38.0+dfsg-7 [18.1 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-common all 2.24.32-3 [2698 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libpangoxft-1.0-0 armhf 1.42.4-6 [47.1 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf gir1.2-pango-1.0 armhf 1.42.4-6 [55.3 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.7-4+b1 [122 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.7-4+b1 [51.1 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.7-4+b1 [54.0 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.10-4 [286 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libxcursor1 armhf 1:1.1.15-2 [33.5 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libxinerama1 armhf 2:1.1.4-2 [17.3 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-0 armhf 2.24.32-3 [1501 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf gir1.2-gtk-2.0 armhf 2.24.32-3 [213 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 2.3.1-1 [845 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 2.3.1-1 [853 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.4+repack-10 [35.2 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-6 [163 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf imagemagick-6.q16 armhf 8:6.9.10.23+dfsg-2 [580 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf imagemagick armhf 8:6.9.10.23+dfsg-2 [155 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libsuitesparseconfig5 armhf 1:5.4.0+dfsg-1 [20.5 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libamd2 armhf 1:5.4.0+dfsg-1 [27.1 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.7.0-1 [82.0 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libasound2-data all 1.1.8-1 [59.6 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libasound2 armhf 1.1.8-1 [304 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libffi-dev armhf 3.2.1-9 [159 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.3-1 [1108 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.3-1 [117 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.2-3 [76.7 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.2-3 [142 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.3-1 [154 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.33.1-0.1 [92.4 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf libblkid-dev armhf 2.33.1-0.1 [210 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libmount-dev armhf 2.33.1-0.1 [209 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libsepol1-dev armhf 2.8-1 [309 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libselinux1-dev armhf 2.8-1+b1 [156 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.3-1 [1371 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libatk1.0-dev armhf 2.30.0-2 [88.3 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libsigc++-2.0-0v5 armhf 2.10.1-2 [62.1 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libglibmm-2.4-1v5 armhf 2.58.0-2 [638 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libatkmm-1.6-1v5 armhf 2.28.0-2 [58.6 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libsigc++-2.0-dev armhf 2.10.1-2 [117 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libglibmm-2.4-dev armhf 2.58.0-2 [628 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libatkmm-1.6-dev armhf 2.28.0-2 [40.6 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libaudio2 armhf 1.9.4-6 [72.7 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-2 [113 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libbtf1 armhf 1:5.4.0+dfsg-1 [21.1 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-2 [150 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.36-5 [281 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libfreetype6-dev armhf 2.9.1-3 [479 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libfontconfig1-dev armhf 2.13.1-2 [943 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:189 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf x11proto-input-dev all 2018.4-4 [3132 B]
Get:192 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:194 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.13.1-2 [169 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.7-1 [760 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:198 http://172.17.0.1/private buster-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libpixman-1-dev armhf 0.36.0-1 [477 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libxcb-render0-dev armhf 1.13.1-2 [111 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0-dev armhf 1.13.1-2 [100 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libcairo2-dev armhf 1.16.0-2 [620 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libcairomm-1.0-1v5 armhf 1.12.2-4 [57.8 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libcairomm-1.0-dev armhf 1.12.2-4 [587 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libcamd2 armhf 1:5.4.0+dfsg-1 [27.7 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf libccolamd2 armhf 1:5.4.0+dfsg-1 [28.4 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf libcolamd2 armhf 1:5.4.0+dfsg-1 [25.3 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf libcholmod3 armhf 1:5.4.0+dfsg-1 [215 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.36.0-2 [73.6 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.64.0-1 [291 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libcxsparse3 armhf 1:5.4.0+dfsg-1 [48.8 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf libdouble-conversion1 armhf 3.1.0-2 [38.4 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf libdrm-amdgpu1 armhf 2.4.97-1+rpi1 [26.1 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf libdrm-radeon1 armhf 2.4.97-1+rpi1 [28.6 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf libdrm-nouveau2 armhf 2.4.97-1+rpi1 [24.4 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf libdrm-omap1 armhf 2.4.97-1+rpi1 [16.1 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf libdrm-freedreno1 armhf 2.4.97-1+rpi1 [26.0 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf libdrm-exynos1 armhf 2.4.97-1+rpi1 [19.1 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf libdrm-tegra0 armhf 2.4.97-1+rpi1 [15.5 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf libdrm-etnaviv1 armhf 2.4.97-1+rpi1 [20.0 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf libdrm-dev armhf 2.4.97-1+rpi1 [140 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20181209-1 [78.7 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf libwayland-server0 armhf 1.16.0-1 [26.0 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf libgbm1 armhf 18.3.4-1 [65.1 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf libglapi-mesa armhf 18.3.4-1 [73.8 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf libwayland-client0 armhf 1.16.0-1 [21.2 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf libx11-xcb1 armhf 2:1.6.7-1 [190 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf libxcb-dri2-0 armhf 1.13.1-2 [100 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf libxcb-dri3-0 armhf 1.13.1-2 [100 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf libxcb-present0 armhf 1.13.1-2 [99.1 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf libxcb-sync1 armhf 1.13.1-2 [102 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf libxcb-xfixes0 armhf 1.13.1-2 [103 kB]
Get:239 http://172.17.0.1/private buster-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:240 http://172.17.0.1/private buster-staging/main armhf libegl-mesa0 armhf 18.3.4-1 [122 kB]
Get:241 http://172.17.0.1/private buster-staging/main armhf libglvnd0 armhf 1.1.0-1 [54.5 kB]
Get:242 http://172.17.0.1/private buster-staging/main armhf libegl1 armhf 1.1.0-1 [27.6 kB]
Get:243 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.7-1 [850 kB]
Get:244 http://172.17.0.1/private buster-staging/main armhf libevdev2 armhf 1.6.0+dfsg-1 [24.9 kB]
Get:245 http://172.17.0.1/private buster-staging/main armhf libfftw3-single3 armhf 3.3.8-2 [633 kB]
Get:246 http://172.17.0.1/private buster-staging/main armhf libfftw3-bin armhf 3.3.8-2 [43.6 kB]
Get:247 http://172.17.0.1/private buster-staging/main armhf libfftw3-dev armhf 3.3.8-2 [1060 kB]
Get:248 http://172.17.0.1/private buster-staging/main armhf libflac8 armhf 1.3.2-3 [148 kB]
Get:249 http://172.17.0.1/private buster-staging/main armhf libfltk1.3 armhf 1.3.4-7 [486 kB]
Get:250 http://172.17.0.1/private buster-staging/main armhf libxcb-glx0 armhf 1.13.1-2 [114 kB]
Get:251 http://172.17.0.1/private buster-staging/main armhf libllvm7 armhf 1:7.0.1-6+rpi1 [11.2 MB]
Get:252 http://172.17.0.1/private buster-staging/main armhf libsensors-config all 1:3.5.0-3 [31.6 kB]
Get:253 http://172.17.0.1/private buster-staging/main armhf libsensors5 armhf 1:3.5.0-3 [49.5 kB]
Get:254 http://172.17.0.1/private buster-staging/main armhf libgl1-mesa-dri armhf 18.3.4-1 [4716 kB]
Get:255 http://172.17.0.1/private buster-staging/main armhf libglx-mesa0 armhf 18.3.4-1 [168 kB]
Get:256 http://172.17.0.1/private buster-staging/main armhf libglx0 armhf 1.1.0-1 [24.6 kB]
Get:257 http://172.17.0.1/private buster-staging/main armhf libgl1 armhf 1.1.0-1 [107 kB]
Get:258 http://172.17.0.1/private buster-staging/main armhf libfltk-gl1.3 armhf 1.3.4-7 [65.8 kB]
Get:259 http://172.17.0.1/private buster-staging/main armhf libfribidi-dev armhf 1.0.5-3.1 [99.2 kB]
Get:260 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-bin armhf 2.38.0+dfsg-7 [22.9 kB]
Get:261 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-dev armhf 2.38.0+dfsg-7 [49.2 kB]
Get:262 http://172.17.0.1/private buster-staging/main armhf mesa-common-dev armhf 18.3.4-1 [608 kB]
Get:263 http://172.17.0.1/private buster-staging/main armhf libglvnd-core-dev armhf 1.1.0-1 [13.2 kB]
Get:264 http://172.17.0.1/private buster-staging/main armhf libgles1 armhf 1.1.0-1 [13.8 kB]
Get:265 http://172.17.0.1/private buster-staging/main armhf libgles2 armhf 1.1.0-1 [20.6 kB]
Get:266 http://172.17.0.1/private buster-staging/main armhf libopengl0 armhf 1.1.0-1 [40.3 kB]
Get:267 http://172.17.0.1/private buster-staging/main armhf libglvnd-dev armhf 1.1.0-1 [5132 B]
Get:268 http://172.17.0.1/private buster-staging/main armhf libx11-xcb-dev armhf 2:1.6.7-1 [192 kB]
Get:269 http://172.17.0.1/private buster-staging/main armhf libxcb-dri3-dev armhf 1.13.1-2 [101 kB]
Get:270 http://172.17.0.1/private buster-staging/main armhf libxcb-randr0 armhf 1.13.1-2 [109 kB]
Get:271 http://172.17.0.1/private buster-staging/main armhf libxcb-randr0-dev armhf 1.13.1-2 [113 kB]
Get:272 http://172.17.0.1/private buster-staging/main armhf libxcb-shape0 armhf 1.13.1-2 [99.5 kB]
Get:273 http://172.17.0.1/private buster-staging/main armhf libxcb-shape0-dev armhf 1.13.1-2 [101 kB]
Get:274 http://172.17.0.1/private buster-staging/main armhf libxcb-xfixes0-dev armhf 1.13.1-2 [105 kB]
Get:275 http://172.17.0.1/private buster-staging/main armhf libxcb-sync-dev armhf 1.13.1-2 [104 kB]
Get:276 http://172.17.0.1/private buster-staging/main armhf libxcb-present-dev armhf 1.13.1-2 [101 kB]
Get:277 http://172.17.0.1/private buster-staging/main armhf libxshmfence-dev armhf 1.3-1 [8224 B]
Get:278 http://172.17.0.1/private buster-staging/main armhf libxcb-dri2-0-dev armhf 1.13.1-2 [102 kB]
Get:279 http://172.17.0.1/private buster-staging/main armhf libxcb-glx0-dev armhf 1.13.1-2 [120 kB]
Get:280 http://172.17.0.1/private buster-staging/main armhf x11proto-fixes-dev all 1:2018.4-4 [3140 B]
Get:281 http://172.17.0.1/private buster-staging/main armhf libxfixes-dev armhf 1:5.0.3-1 [22.7 kB]
Get:282 http://172.17.0.1/private buster-staging/main armhf x11proto-damage-dev all 1:2018.4-4 [3140 B]
Get:283 http://172.17.0.1/private buster-staging/main armhf libxdamage-dev armhf 1:1.1.4-3 [13.9 kB]
Get:284 http://172.17.0.1/private buster-staging/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [3140 B]
Get:285 http://172.17.0.1/private buster-staging/main armhf libxxf86vm-dev armhf 1:1.1.4-1+b2 [24.9 kB]
Get:286 http://172.17.0.1/private buster-staging/main armhf libgl1-mesa-dev armhf 18.3.4-1 [47.6 kB]
Get:287 http://172.17.0.1/private buster-staging/main armhf libgl2ps1.4 armhf 1.4.0+dfsg1-2 [34.2 kB]
Get:288 http://172.17.0.1/private buster-staging/main armhf libglpk40 armhf 4.65-2 [339 kB]
Get:289 http://172.17.0.1/private buster-staging/main armhf libglu1-mesa-dev armhf 9.0.0-2.1 [169 kB]
Get:290 http://172.17.0.1/private buster-staging/main armhf libwmf0.2-7 armhf 0.2.8.4-14 [140 kB]
Get:291 http://172.17.0.1/private buster-staging/main armhf libgraphicsmagick-q16-3 armhf 1.4~hg15896-1 [1037 kB]
Get:292 http://172.17.0.1/private buster-staging/main armhf libgraphicsmagick++-q16-12 armhf 1.4~hg15896-1 [106 kB]
Get:293 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.13-7 [23.1 kB]
Get:294 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.5+dfsg-6 [79.0 kB]
Get:295 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.5+dfsg-6 [704 kB]
Get:296 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.5+dfsg-6 [893 kB]
Get:297 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 2.3.1-1 [833 kB]
Get:298 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-6 [8841 kB]
Get:299 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 2.3.1-1 [1244 kB]
Get:300 http://172.17.0.1/private buster-staging/main armhf libxft-dev armhf 2.3.2-2 [60.3 kB]
Get:301 http://172.17.0.1/private buster-staging/main armhf pango1.0-tools armhf 1.42.4-6 [53.1 kB]
Get:302 http://172.17.0.1/private buster-staging/main armhf libpango1.0-dev armhf 1.42.4-6 [139 kB]
Get:303 http://172.17.0.1/private buster-staging/main armhf x11proto-xinerama-dev all 2018.4-4 [3132 B]
Get:304 http://172.17.0.1/private buster-staging/main armhf libxinerama-dev armhf 2:1.1.4-2 [19.7 kB]
Get:305 http://172.17.0.1/private buster-staging/main armhf libxi-dev armhf 2:1.7.9-1 [236 kB]
Get:306 http://172.17.0.1/private buster-staging/main armhf x11proto-randr-dev all 2018.4-4 [3132 B]
Get:307 http://172.17.0.1/private buster-staging/main armhf libxrandr-dev armhf 2:1.5.1-1 [42.5 kB]
Get:308 http://172.17.0.1/private buster-staging/main armhf libxcursor-dev armhf 1:1.1.15-2 [41.1 kB]
Get:309 http://172.17.0.1/private buster-staging/main armhf x11proto-composite-dev all 1:2018.4-4 [3140 B]
Get:310 http://172.17.0.1/private buster-staging/main armhf libxcomposite-dev armhf 1:0.4.4-2 [19.8 kB]
Get:311 http://172.17.0.1/private buster-staging/main armhf libxml2-utils armhf 2.9.4+dfsg1-7+b1 [96.1 kB]
Get:312 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-dev armhf 2.24.32-3 [2331 kB]
Get:313 http://172.17.0.1/private buster-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:314 http://172.17.0.1/private buster-staging/main armhf libgtkglext1 armhf 1.2.0-9 [80.0 kB]
Get:315 http://172.17.0.1/private buster-staging/main armhf libpangox-1.0-dev armhf 0.0.2-5 [39.1 kB]
Get:316 http://172.17.0.1/private buster-staging/main armhf libxt-dev armhf 1:1.1.5-1 [390 kB]
Get:317 http://172.17.0.1/private buster-staging/main armhf libxmu-headers all 2:1.1.2-2 [51.9 kB]
Get:318 http://172.17.0.1/private buster-staging/main armhf libxmu-dev armhf 2:1.1.2-2 [56.2 kB]
Get:319 http://172.17.0.1/private buster-staging/main armhf libgtkglext1-dev armhf 1.2.0-9 [365 kB]
Get:320 http://172.17.0.1/private buster-staging/main armhf libpangomm-1.4-1v5 armhf 2.42.0-2 [51.4 kB]
Get:321 http://172.17.0.1/private buster-staging/main armhf libgtkmm-2.4-1v5 armhf 1:2.24.5-4 [692 kB]
Get:322 http://172.17.0.1/private buster-staging/main armhf libpangomm-1.4-dev armhf 2.42.0-2 [65.3 kB]
Get:323 http://172.17.0.1/private buster-staging/main armhf libgtkmm-2.4-dev armhf 1:2.24.5-4 [611 kB]
Get:324 http://172.17.0.1/private buster-staging/main armhf libgudev-1.0-0 armhf 232-2+rpi1 [11.8 kB]
Get:325 http://172.17.0.1/private buster-staging/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1259 kB]
Get:326 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-10 [121 kB]
Get:327 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.4+repack-10 [2221 kB]
Get:328 http://172.17.0.1/private buster-staging/main armhf libwacom-common all 0.31-1 [38.6 kB]
Get:329 http://172.17.0.1/private buster-staging/main armhf libwacom2 armhf 0.31-1 [16.0 kB]
Get:330 http://172.17.0.1/private buster-staging/main armhf libinput-bin armhf 1.12.6-1 [16.3 kB]
Get:331 http://172.17.0.1/private buster-staging/main armhf libinput10 armhf 1.12.6-1 [90.3 kB]
Get:332 http://172.17.0.1/private buster-staging/main armhf libopus0 armhf 1.3-1 [169 kB]
Get:333 http://172.17.0.1/private buster-staging/main armhf libsamplerate0 armhf 0.1.9-2 [942 kB]
Get:334 http://172.17.0.1/private buster-staging/main armhf libjack-jackd2-0 armhf 1.9.12~dfsg-2 [252 kB]
Get:335 http://172.17.0.1/private buster-staging/main armhf libklu1 armhf 1:5.4.0+dfsg-1 [48.6 kB]
Get:336 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-2 [1551 kB]
Get:337 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-2 [278 kB]
Get:338 http://172.17.0.1/private buster-staging/main armhf libqrupdate1 armhf 1.1.2-3 [27.7 kB]
Get:339 http://172.17.0.1/private buster-staging/main armhf libumfpack5 armhf 1:5.4.0+dfsg-1 [126 kB]
Get:340 http://172.17.0.1/private buster-staging/main armhf liboctave6 armhf 4.4.1-4 [5974 kB]
Get:341 http://172.17.0.1/private buster-staging/main armhf libportaudio2 armhf 19.6.0-1 [56.9 kB]
Get:342 http://172.17.0.1/private buster-staging/main armhf libqscintilla2-qt5-l10n all 2.10.4+dfsg-1+rpi1 [53.4 kB]
Get:343 http://172.17.0.1/private buster-staging/main armhf libpcre2-16-0 armhf 10.32-4 [174 kB]
Get:344 http://172.17.0.1/private buster-staging/main armhf libqt5core5a armhf 5.11.3+dfsg-5+rpi1 [1647 kB]
Get:345 http://172.17.0.1/private buster-staging/main armhf libqt5dbus5 armhf 5.11.3+dfsg-5+rpi1 [197 kB]
Get:346 http://172.17.0.1/private buster-staging/main armhf libqt5network5 armhf 5.11.3+dfsg-5+rpi1 [563 kB]
Get:347 http://172.17.0.1/private buster-staging/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB]
Get:348 http://172.17.0.1/private buster-staging/main armhf libxcb-image0 armhf 0.4.0-1+b2 [23.3 kB]
Get:349 http://172.17.0.1/private buster-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:350 http://172.17.0.1/private buster-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:351 http://172.17.0.1/private buster-staging/main armhf libxcb-xinerama0 armhf 1.13.1-2 [98.8 kB]
Get:352 http://172.17.0.1/private buster-staging/main armhf libxcb-xkb1 armhf 1.13.1-2 [120 kB]
Get:353 http://172.17.0.1/private buster-staging/main armhf xkb-data all 2.26-2 [681 kB]
Get:354 http://172.17.0.1/private buster-staging/main armhf libxkbcommon0 armhf 0.8.2-1 [110 kB]
Get:355 http://172.17.0.1/private buster-staging/main armhf libxkbcommon-x11-0 armhf 0.8.2-1 [38.1 kB]
Get:356 http://172.17.0.1/private buster-staging/main armhf libqt5gui5 armhf 5.11.3+dfsg-5+rpi1 [2184 kB]
Get:357 http://172.17.0.1/private buster-staging/main armhf libqt5widgets5 armhf 5.11.3+dfsg-5+rpi1 [1938 kB]
Get:358 http://172.17.0.1/private buster-staging/main armhf libqt5printsupport5 armhf 5.11.3+dfsg-5+rpi1 [197 kB]
Get:359 http://172.17.0.1/private buster-staging/main armhf libqscintilla2-qt5-13 armhf 2.10.4+dfsg-1+rpi1+b1 [868 kB]
Get:360 http://172.17.0.1/private buster-staging/main armhf libqt5sql5 armhf 5.11.3+dfsg-5+rpi1 [128 kB]
Get:361 http://172.17.0.1/private buster-staging/main armhf libqt5help5 armhf 5.11.3-4 [124 kB]
Get:362 http://172.17.0.1/private buster-staging/main armhf libqt5opengl5 armhf 5.11.3+dfsg-5+rpi1 [139 kB]
Get:363 http://172.17.0.1/private buster-staging/main armhf libvorbis0a armhf 1.3.6-1 [82.2 kB]
Get:364 http://172.17.0.1/private buster-staging/main armhf libvorbisenc2 armhf 1.3.6-1 [73.4 kB]
Get:365 http://172.17.0.1/private buster-staging/main armhf libsndfile1 armhf 1.0.28-5 [237 kB]
Get:366 http://172.17.0.1/private buster-staging/main armhf libtext-unidecode-perl all 1.30-1 [103 kB]
Get:367 http://172.17.0.1/private buster-staging/main armhf libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:368 http://172.17.0.1/private buster-staging/main armhf libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:369 http://172.17.0.1/private buster-staging/main armhf libxml-sax-perl all 1.00+dfsg-1 [58.6 kB]
Get:370 http://172.17.0.1/private buster-staging/main armhf libxml-libxml-perl armhf 2.0134+dfsg-1 [322 kB]
Get:371 http://172.17.0.1/private buster-staging/main armhf texinfo armhf 6.5.0.dfsg.1-4+b1 [1423 kB]
Get:372 http://172.17.0.1/private buster-staging/main armhf octave-common all 4.4.1-4 [4361 kB]
Get:373 http://172.17.0.1/private buster-staging/main armhf octave armhf 4.4.1-4 [1865 kB]
Get:374 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:375 http://172.17.0.1/private buster-staging/main armhf liboctave-dev armhf 4.4.1-4 [756 kB]
Get:376 http://172.17.0.1/private buster-staging/main armhf qtcore4-l10n all 4:4.8.7+dfsg-17+rpi1 [661 kB]
Get:377 http://172.17.0.1/private buster-staging/main armhf libqtcore4 armhf 4:4.8.7+dfsg-17+rpi1 [1358 kB]
Get:378 http://172.17.0.1/private buster-staging/main armhf libqt4-xml armhf 4:4.8.7+dfsg-17+rpi1 [127 kB]
Get:379 http://172.17.0.1/private buster-staging/main armhf libqtdbus4 armhf 4:4.8.7+dfsg-17+rpi1 [193 kB]
Get:380 http://172.17.0.1/private buster-staging/main armhf qtchooser armhf 66-1 [23.0 kB]
Get:381 http://172.17.0.1/private buster-staging/main armhf qdbus armhf 4:4.8.7+dfsg-17+rpi1 [72.9 kB]
Get:382 http://172.17.0.1/private buster-staging/main armhf libqt4-dbus armhf 4:4.8.7+dfsg-17+rpi1 [53.6 kB]
Get:383 http://172.17.0.1/private buster-staging/main armhf libqt4-network armhf 4:4.8.7+dfsg-17+rpi1 [489 kB]
Get:384 http://172.17.0.1/private buster-staging/main armhf libqt4-script armhf 4:4.8.7+dfsg-17+rpi1 [731 kB]
Get:385 http://172.17.0.1/private buster-staging/main armhf libqt4-sql armhf 4:4.8.7+dfsg-17+rpi1 [129 kB]
Get:386 http://172.17.0.1/private buster-staging/main armhf libqt4-xmlpatterns armhf 4:4.8.7+dfsg-17+rpi1 [869 kB]
Get:387 http://172.17.0.1/private buster-staging/main armhf libqtgui4 armhf 4:4.8.7+dfsg-17+rpi1 [3394 kB]
Get:388 http://172.17.0.1/private buster-staging/main armhf libqt4-declarative armhf 4:4.8.7+dfsg-17+rpi1 [903 kB]
Get:389 http://172.17.0.1/private buster-staging/main armhf libqt4-designer armhf 4:4.8.7+dfsg-17+rpi1 [3351 kB]
Get:390 http://172.17.0.1/private buster-staging/main armhf libqt4-qt3support armhf 4:4.8.7+dfsg-17+rpi1 [890 kB]
Get:391 http://172.17.0.1/private buster-staging/main armhf libqt4-dev-bin armhf 4:4.8.7+dfsg-17+rpi1 [1413 kB]
Get:392 http://172.17.0.1/private buster-staging/main armhf libqt4-help armhf 4:4.8.7+dfsg-17+rpi1 [218 kB]
Get:393 http://172.17.0.1/private buster-staging/main armhf libqt4-scripttools armhf 4:4.8.7+dfsg-17+rpi1 [234 kB]
Get:394 http://172.17.0.1/private buster-staging/main armhf libqt4-svg armhf 4:4.8.7+dfsg-17+rpi1 [158 kB]
Get:395 http://172.17.0.1/private buster-staging/main armhf libqt4-test armhf 4:4.8.7+dfsg-17+rpi1 [97.8 kB]
Get:396 http://172.17.0.1/private buster-staging/main armhf qt4-linguist-tools armhf 4:4.8.7+dfsg-17+rpi1 [736 kB]
Get:397 http://172.17.0.1/private buster-staging/main armhf qt4-qmake armhf 4:4.8.7+dfsg-17+rpi1 [1032 kB]
Get:398 http://172.17.0.1/private buster-staging/main armhf libqt4-dev armhf 4:4.8.7+dfsg-17+rpi1 [861 kB]
Get:399 http://172.17.0.1/private buster-staging/main armhf libqt4-opengl armhf 4:4.8.7+dfsg-17+rpi1 [293 kB]
Get:400 http://172.17.0.1/private buster-staging/main armhf libqt4-opengl-dev armhf 4:4.8.7+dfsg-17+rpi1 [70.0 kB]
Get:401 http://172.17.0.1/private buster-staging/main armhf matlab-support-dev all 0.0.21 [7348 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:armhf.
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Unpacking libbsd0:armhf (0.9.1-1) ...
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Unpacking bsdmainutils (11.1.2) ...
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Unpacking gcc-8-base:armhf (8.2.0-21+rpi1) over (8.2.0-20+rpi1) ...
Setting up gcc-8-base:armhf (8.2.0-21+rpi1) ...
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Unpacking libgcc1:armhf (1:8.2.0-21+rpi1) over (1:8.2.0-20+rpi1) ...
Setting up libgcc1:armhf (1:8.2.0-21+rpi1) ...
(Reading database ... 15924 files and directories currently installed.)
Preparing to unpack .../0-libgomp1_8.2.0-21+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (8.2.0-21+rpi1) over (8.2.0-20+rpi1) ...
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Unpacking g++-8 (8.2.0-21+rpi1) over (8.2.0-20+rpi1) ...
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Unpacking libgcc-8-dev:armhf (8.2.0-21+rpi1) over (8.2.0-20+rpi1) ...
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Unpacking gcc-8 (8.2.0-21+rpi1) over (8.2.0-20+rpi1) ...
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Unpacking cpp-8 (8.2.0-21+rpi1) over (8.2.0-20+rpi1) ...
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Unpacking libstdc++6:armhf (8.2.0-21+rpi1) over (8.2.0-20+rpi1) ...
Setting up libstdc++6:armhf (8.2.0-21+rpi1) ...
Selecting previously unselected package libuchardet0:armhf.
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Preparing to unpack .../00-libuchardet0_0.0.6-3_armhf.deb ...
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Unpacking groff-base (1.22.4-2) ...
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Unpacking libjpeg8:armhf (8d1-2) ...
Selecting previously unselected package libfftw3-double3:armhf.
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Unpacking libfftw3-double3:armhf (3.3.8-2) ...
Selecting previously unselected package libfreetype6:armhf.
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Unpacking libfreetype6:armhf (2.9.1-3) ...
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Unpacking libx265-165:armhf (2.9-4) ...
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Selecting previously unselected package libmagickcore-6.q16-6:armhf.
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Running in chroot, ignoring request.
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Setting up x11proto-core-dev (2018.4-4) ...
Setting up libwacom2:armhf (0.31-1) ...
Setting up libmng1:armhf (1.0.10+dfsg-3.1) ...
Setting up libxshmfence-dev:armhf (1.3-1) ...
Setting up libsigc++-2.0-dev:armhf (2.10.1-2) ...
Setting up libgsl23:armhf (2.5+dfsg-6) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libgsl-dev (2.5+dfsg-6) ...
Setting up libllvm7:armhf (1:7.0.1-6+rpi1) ...
Setting up libeigen3-dev (3.3.7-1) ...
Setting up libcurl3-gnutls:armhf (7.64.0-1) ...
Setting up libdrm-dev:armhf (2.4.97-1+rpi1) ...
Setting up groff-base (1.22.4-2) ...
Setting up x11proto-fixes-dev (1:2018.4-4) ...
Setting up qt4-qmake (4:4.8.7+dfsg-17+rpi1) ...
Setting up libgbm1:armhf (18.3.4-1) ...
Setting up libcamd2:armhf (1:5.4.0+dfsg-1) ...
Setting up libblkid-dev:armhf (2.33.1-0.1) ...
Setting up libflac8:armhf (1.3.2-3) ...
Setting up libxml2-utils (2.9.4+dfsg1-7+b1) ...
Setting up libgl1-mesa-dri:armhf (18.3.4-1) ...
Setting up libaec-dev:armhf (1.0.2-1) ...
Setting up python2.7 (2.7.16~rc1-1) ...
Setting up libharfbuzz0b:armhf (2.3.1-1) ...
Setting up libtiff5:armhf (4.0.10-4) ...
Setting up x11proto-xf86vidmode-dev (2018.4-4) ...
Setting up libxau-dev:armhf (1:1.0.8-1+b2) ...
Setting up python3.7 (3.7.2-2) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.28-2) ...
Setting up libqt4-sql:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libicu-dev:armhf (63.1-6) ...
Setting up libhdf5-103:armhf (1.10.4+repack-10) ...
Setting up file (1:5.35-2) ...
Setting up libinput-bin (1.12.6-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libamd2:armhf (1:5.4.0+dfsg-1) ...
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libfribidi-dev:armhf (1.0.5-3.1) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libfftw3-dev:armhf (3.3.8-2) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libqt5sql5:armhf (5.11.3+dfsg-5+rpi1) ...
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up libjack-jackd2-0:armhf (1.9.12~dfsg-2) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up libpython2-stdlib:armhf (2.7.15-4) ...
Setting up libgcc-8-dev:armhf (8.2.0-21+rpi1) ...
Setting up libavahi-common3:armhf (0.7-4+b1) ...
Setting up libglibmm-2.4-1v5:armhf (2.58.0-2) ...
Setting up libxml-libxml-perl (2.0134+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libpng-dev:armhf (1.6.36-5) ...
Setting up libvorbisenc2:armhf (1.3.6-1) ...
Setting up libmount-dev:armhf (2.33.1-0.1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-21+rpi1) ...
Setting up libselinux1-dev:armhf (2.8-1+b1) ...
Setting up libqtdbus4:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libharfbuzz-gobject0:armhf (2.3.1-1) ...
Setting up libatkmm-1.6-1v5:armhf (2.28.0-2) ...
Setting up libxcb-xkb1:armhf (1.13.1-2) ...
Setting up libtool (2.4.6-9) ...
Setting up libxcb-xinerama0:armhf (1.13.1-2) ...
Setting up libpython3-stdlib:armhf (3.7.2-1) ...
Setting up libxcb-present0:armhf (1.13.1-2) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libstdc++-8-dev:armhf (8.2.0-21+rpi1) ...
Setting up libxcb-dri2-0:armhf (1.13.1-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxcb-dri3-0:armhf (1.13.1-2) ...
Setting up libxcb-glx0:armhf (1.13.1-2) ...
Setting up libxcb-randr0:armhf (1.13.1-2) ...
Setting up libxcb-xfixes0:armhf (1.13.1-2) ...
Setting up libxcb-icccm4:armhf (0.4.1-1.1) ...
Setting up libxcb-render0:armhf (1.13.1-2) ...
Setting up libxcb-util0:armhf (0.3.8-3) ...
Setting up libportaudio2:armhf (19.6.0-1) ...
Setting up libharfbuzz-icu0:armhf (2.3.1-1) ...
Setting up libglpk40:armhf (4.65-2) ...
Setting up po-debconf (1.0.21) ...
Setting up python3 (3.7.2-1) ...
Setting up libqt4-script:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libblas-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up libinput10:armhf (1.12.6-1) ...
Setting up libklu1:armhf (1:5.4.0+dfsg-1) ...
Setting up libhdf5-cpp-103:armhf (1.10.4+repack-10) ...
Setting up libhdf5-dev (1.10.4+repack-10) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libxkbcommon-x11-0:armhf (0.8.2-1) ...
Setting up python2 (2.7.15-4) ...
Setting up libcholmod3:armhf (1:5.4.0+dfsg-1) ...
Setting up qdbus (4:4.8.7+dfsg-17+rpi1) ...
Setting up gcc-8 (8.2.0-21+rpi1) ...
Setting up libqrupdate1:armhf (1.1.2-3) ...
Setting up libxcb-sync1:armhf (1.13.1-2) ...
Setting up g++-8 (8.2.0-21+rpi1) ...
Setting up libpython-stdlib:armhf (2.7.15-4) ...
Setting up libsndfile1:armhf (1.0.28-5) ...
Setting up gir1.2-harfbuzz-0.0:armhf (2.3.1-1) ...
Setting up libfreetype6-dev:armhf (2.9.1-3) ...
Setting up libice-dev:armhf (2:1.0.9-2) ...
Setting up libxcomposite1:armhf (1:0.4.4-2) ...
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxcb-shape0:armhf (1.13.1-2) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libxcb1-dev:armhf (1.13.1-2) ...
Setting up libxcb-glx0-dev:armhf (1.13.1-2) ...
Setting up libarpack2:armhf (3.7.0-1) ...
Setting up libavahi-client3:armhf (0.7-4+b1) ...
Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ...
Setting up libegl-mesa0:armhf (18.3.4-1) ...
Setting up texinfo (6.5.0.dfsg.1-4+b1) ...
Setting up libx11-dev:armhf (2:1.6.7-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libqt4-dbus:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up python3-lib2to3 (3.7.2-3) ...
Setting up libwmf0.2-7:armhf (0.2.8.4-14) ...
Setting up libqt4-network:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up python3-distutils (3.7.2-3) ...
Setting up python (2.7.15-4) ...
Setting up libxcb-sync-dev:armhf (1.13.1-2) ...
Setting up libaudio2:armhf (1.9.4-6) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libcups2:armhf (2.2.10-4) ...
Setting up libfontconfig1-dev:armhf (2.13.1-2) ...
Setting up liblapack-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libx11-xcb-dev:armhf (2:1.6.7-1) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ...
Setting up libxcb-image0:armhf (0.4.0-1+b2) ...
Setting up mesa-common-dev:armhf (18.3.4-1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxfixes3:armhf (1:5.0.3-1) ...
Setting up libglib2.0-dev-bin (2.58.3-1) ...
Setting up gfortran-8 (8.2.0-21+rpi1) ...
Setting up libxmu-headers (2:1.1.2-2) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.38.0+dfsg-7) ...
Setting up libxcb-shm0-dev:armhf (1.13.1-2) ...
Setting up libgdk-pixbuf2.0-bin (2.38.0+dfsg-7) ...
Setting up libumfpack5:armhf (1:5.4.0+dfsg-1) ...
Setting up gir1.2-gdkpixbuf-2.0:armhf (2.38.0+dfsg-7) ...
Setting up libxrender-dev:armhf (1:0.9.10-1) ...
Setting up libqt4-xmlpatterns:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libglib2.0-dev:armhf (2.58.3-1) ...
Setting up libgraphicsmagick-q16-3 (1.4~hg15896-1) ...
Setting up libxmu6:armhf (2:1.1.2-2) ...
Setting up libxcb-dri2-0-dev:armhf (1.13.1-2) ...
Setting up libxcb-render0-dev:armhf (1.13.1-2) ...
Setting up libegl1:armhf (1.1.0-1) ...
Setting up libxft-dev:armhf (2.3.2-2) ...
Setting up gtk-update-icon-cache (3.24.5-1) ...
Setting up libgdk-pixbuf2.0-dev:armhf (2.38.0+dfsg-7) ...
Setting up libxcb-dri3-dev:armhf (1.13.1-2) ...
Setting up libxcursor1:armhf (1:1.1.15-2) ...
Setting up libmagickcore-6.q16-6:armhf (8:6.9.10.23+dfsg-2) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libpango-1.0-0:armhf (1.42.4-6) ...
Setting up libxcb-shape0-dev:armhf (1.13.1-2) ...
Setting up libpangox-1.0-0:armhf (0.0.2-5) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libxxf86vm-dev:armhf (1:1.1.4-1+b2) ...
Setting up libxfixes-dev:armhf (1:5.0.3-1) ...
Setting up libharfbuzz-dev:armhf (2.3.1-1) ...
Setting up libxrandr2:armhf (2:1.5.1-1) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libgraphicsmagick++-q16-12 (1.4~hg15896-1) ...
Setting up libcairo2:armhf (1.16.0-2) ...
Setting up libcairomm-1.0-1v5:armhf (1.12.2-4) ...
Setting up libxinerama1:armhf (2:1.1.4-2) ...
Setting up libxcursor-dev:armhf (1:1.1.15-2) ...
Setting up libxcb-randr0-dev:armhf (1.13.1-2) ...
Setting up libxt-dev:armhf (1:1.1.5-1) ...
Setting up libqtgui4:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libxdamage1:armhf (1:1.1.4-3) ...
Setting up libxrandr-dev:armhf (2:1.5.1-1) ...
Setting up libglibmm-2.4-dev:armhf (2.58.0-2) ...
Setting up libxcomposite-dev:armhf (1:0.4.4-2) ...
Setting up libxmu-dev:armhf (2:1.1.2-2) ...
Setting up libqt4-designer:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libcairo-script-interpreter2:armhf (1.16.0-2) ...
Setting up libxcb-xfixes0-dev:armhf (1.13.1-2) ...
Setting up libqt4-help:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libcairo-gobject2:armhf (1.16.0-2) ...
Setting up libxdamage-dev:armhf (1:1.1.4-3) ...
Setting up libatk1.0-dev:armhf (2.30.0-2) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-6) ...
Setting up libmagickwand-6.q16-6:armhf (8:6.9.10.23+dfsg-2) ...
Setting up libqt5gui5:armhf (5.11.3+dfsg-5+rpi1) ...
Setting up libxinerama-dev:armhf (2:1.1.4-2) ...
Setting up libfltk1.3:armhf (1.3.4-7) ...
Setting up libxcb-present-dev:armhf (1.13.1-2) ...
Setting up libxi-dev:armhf (2:1.7.9-1) ...
Setting up libqt4-svg:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libglx-mesa0:armhf (18.3.4-1) ...
Setting up libqt4-scripttools:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libqt4-declarative:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libqt5widgets5:armhf (5.11.3+dfsg-5+rpi1) ...
Setting up libcairo2-dev:armhf (1.16.0-2) ...
Setting up libqt4-qt3support:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up gir1.2-freedesktop:armhf (1.58.3-2) ...
Setting up libatkmm-1.6-dev:armhf (2.28.0-2) ...
Setting up libcairomm-1.0-dev:armhf (1.12.2-4) ...
Setting up libpangoxft-1.0-0:armhf (1.42.4-6) ...
Setting up imagemagick-6.q16 (8:6.9.10.23+dfsg-2) ...
update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode
update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode
update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode
update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode
update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode
update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode
update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode
update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode
update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode
update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode
update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode
update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode
update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode
update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode
update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode
update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode
update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode
update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode
update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode
update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode
update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode
update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode
Setting up libpangocairo-1.0-0:armhf (1.42.4-6) ...
Setting up libqt5printsupport5:armhf (5.11.3+dfsg-5+rpi1) ...
Setting up libpangomm-1.4-1v5:armhf (2.42.0-2) ...
Setting up libqt5help5:armhf (5.11.3-4) ...
Setting up libqt5opengl5:armhf (5.11.3+dfsg-5+rpi1) ...
Setting up gir1.2-pango-1.0:armhf (1.42.4-6) ...
Setting up libqt4-dev-bin (4:4.8.7+dfsg-17+rpi1) ...
Setting up imagemagick (8:6.9.10.23+dfsg-2) ...
Setting up libqt4-dev (4:4.8.7+dfsg-17+rpi1) ...
Setting up libglx0:armhf (1.1.0-1) ...
Setting up librsvg2-2:armhf (2.44.10-1+rpi1) ...
Setting up pango1.0-tools (1.42.4-6) ...
Setting up libqscintilla2-qt5-13 (2.10.4+dfsg-1+rpi1+b1) ...
Setting up librsvg2-common:armhf (2.44.10-1+rpi1) ...
Setting up libgl1:armhf (1.1.0-1) ...
Setting up libglu1-mesa:armhf (9.0.0-2.1) ...
Setting up libpango1.0-dev:armhf (1.42.4-6) ...
Setting up libpangox-1.0-dev (0.0.2-5) ...
Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ...
Setting up adwaita-icon-theme (3.30.1-1) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up libpangomm-1.4-dev:armhf (2.42.0-2) ...
Setting up libqt4-opengl:armhf (4:4.8.7+dfsg-17+rpi1) ...
Setting up libgtk2.0-0:armhf (2.24.32-3) ...
Setting up libfltk-gl1.3:armhf (1.3.4-7) ...
Setting up libgtkglext1:armhf (1.2.0-9) ...
Setting up libglvnd-dev:armhf (1.1.0-1) ...
Setting up libgtkmm-2.4-1v5:armhf (1:2.24.5-4) ...
Setting up libgl1-mesa-dev:armhf (18.3.4-1) ...
Setting up liboctave6:armhf (4.4.1-4) ...
Setting up gir1.2-gtk-2.0:armhf (2.24.32-3) ...
Setting up octave (4.4.1-4) ...
Setting up libglu1-mesa-dev:armhf (9.0.0-2.1) ...
Setting up libgtk2.0-dev:armhf (2.24.32-3) ...
Setting up libgtkglext1-dev:armhf (1.2.0-9) ...
Setting up libgtkmm-2.4-dev:armhf (1:2.24.5-4) ...
Setting up liboctave-dev (4.4.1-4) ...
Setting up libqt4-opengl-dev (4:4.8.7+dfsg-17+rpi1) ...
Setting up dh-strip-nondeterminism (1.1.1-1) ...
Setting up debhelper (12.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-mrtrix3-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-6+rpi1) ...
Processing triggers for libgdk-pixbuf2.0-0:armhf (2.38.0+dfsg-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-21+rpi1 gcc-8_8.2.0-21+rpi1 libc6-dev_2.28-6+rpi1 libstdc++-8-dev_8.2.0-21+rpi1 libstdc++6_8.2.0-21+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 adwaita-icon-theme_3.30.1-1 apt_1.8.0~rc3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.46 bash_5.0-2 bc_1.07.1-2 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20190110 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-21+rpi1 dash_0.5.10.2-5 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.70 debhelper_12.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.6-1 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.155-2 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2+rpi1 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libxcb-xfixes0-dev_1.13.1-2 libxcb-xinerama0_1.13.1-2 libxcb-xkb1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxcomposite-dev_1:0.4.4-2 libxcomposite1_1:0.4.4-2 libxcursor-dev_1:1.1.15-2 libxcursor1_1:1.1.15-2 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxft-dev_2.3.2-2 libxft2_2.3.2-2 libxi-dev_2:1.7.9-1 libxi6_2:1.7.9-1 libxinerama-dev_2:1.1.4-2 libxinerama1_2:1.1.4-2 libxkbcommon-x11-0_0.8.2-1 libxkbcommon0_0.8.2-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml2_2.9.4+dfsg1-7+b1 libxml2-utils_2.9.4+dfsg1-7+b1 libxmu-dev_2:1.1.2-2 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2 libxrandr-dev_2:1.5.1-1 libxrandr2_2:1.5.1-1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libzstd1_1.3.8+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-2 matlab-support-dev_0.0.21 mawk_1.3.3-17 mesa-common-dev_18.3.4-1 mime-support_3.62 mount_2.33.1-0.1 multiarch-support_2.28-6+rpi1 nano_3.2-1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 octave_4.4.1-4 octave-common_4.4.1-4 openssl_1.1.1a-1 pango1.0-tools_1.42.4-6 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-4 pinentry-curses_1.1.0-1 pkg-config_0.29-6 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.15-4 python-minimal_2.7.15-4 python2_2.7.15-4 python2-minimal_2.7.15-4 python2.7_2.7.16~rc1-1 python2.7-minimal_2.7.16~rc1-1 python3_3.7.2-1 python3-distutils_3.7.2-3 python3-lib2to3_3.7.2-3 python3-minimal_3.7.2-1 python3.7_3.7.2-2 python3.7-minimal_3.7.2-2 qdbus_4:4.8.7+dfsg-17+rpi1 qt4-linguist-tools_4:4.8.7+dfsg-17+rpi1 qt4-qmake_4:4.8.7+dfsg-17+rpi1 qtchooser_66-1 qtcore4-l10n_4:4.8.7+dfsg-17+rpi1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mrtrix3-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 systemd_240-5+rpi1 systemd-sysv_240-5+rpi1 sysvinit-utils_2.93-6 tar_1.30+dfsg-5 tex-common_6.10 texinfo_6.5.0.dfsg.1-4+b1 tzdata_2018i-1 ucf_3.0038+nmu1 udev_240-5+rpi1 util-linux_2.33.1-0.1 uuid-dev_2.33.1-0.1 x11-common_1:7.7+19 x11proto-composite-dev_1:2018.4-4 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-input-dev_2018.4-4 x11proto-randr-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 x11proto-xinerama-dev_2018.4-4 xkb-data_2.26-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 23 02:48:32 2019 UTC
gpgv:                using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.dsc
dpkg-source: info: extracting mrtrix3 in /<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2
dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2.orig.tar.gz
dpkg-source: info: unpacking mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying up_blend_python
dpkg-source: info: applying changeset_7fb509cf35d5862f073faaa7e136e987486960d9.diff
dpkg-source: info: applying changeset_1c1d3304791bd029bca744ff6634bfa4824f6938.diff
dpkg-source: info: applying deb_run_tests
dpkg-source: info: applying debian_build_cfg

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-8b7d2175-fe38-47d4-a716-a2b3ef71785b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package mrtrix3
dpkg-buildpackage: info: source version 3.0~rc3+git135-g2b8e7d0c2-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2'
./build clean
find . -name '*.pyc' -delete
rm clean \
	config configure.log build.log \
	core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp
rm: cannot remove 'clean': No such file or directory
rm: cannot remove 'config': No such file or directory
rm: cannot remove 'configure.log': No such file or directory
rm: cannot remove 'core/version.cpp': No such file or directory
rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory
rm: cannot remove 'src/exec_version.cpp': No such file or directory
make[1]: [debian/rules:69: override_dh_clean] Error 1 (ignored)
dh_clean
make[1]: Leaving directory '/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2'
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2'
./configure -openmp # -debug

MRtrix build type requested: release version with openmp

Detecting OS: linux
Looking for compiler [clang++]: not found
Looking for compiler [g++]: g++ (Raspbian 8.2.0-21+rpi1) 8.2.0
Checking for C++11 compliance: ok
Checking shared library generation: ok
Detecting pointer size: 32 bit
Detecting byte order: little-endian
Checking for variable-length array support: ok
Checking for non-POD variable-length array support: ok
Checking for ::max_align_t: 8 bytes
Checking for std::max_align_t: 8 bytes
Checking for Eigen3 library: 3.3.7
Checking for zlib compression library: 1.2.11
Checking for "JSON for Modern C++" requirements: ok
Checking for TIFF library: not found - TIFF support disabled
Checking for FFTW library: fftw-3.3.8
Checking for OpenMP support: ok
Checking for Qt moc: moc (version 4.8.7)
Checking for Qt qmake: qmake (version 4.8.7)
Checking for Qt rcc: rcc (version 4.8.7)
Checking for Qt: 4.8.7

writing configuration to file './config': ok

make[1]: Leaving directory '/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2'
./build -verbose
active config is default

reading configuration from "config"...

getting git version in folder "."... not found

getting git version in folder "."... not found
version file "./core/version.cpp" is out of date - updating

getting git version in folder "."... not found
version file "./src/exec_version.cpp" is out of date - updating

compiling TODO list...
building targets: bin/5tt2gmwmi bin/5tt2vis bin/5ttcheck bin/5ttedit bin/afdconnectivity bin/amp2response bin/amp2sh bin/connectome2tck bin/connectomestats bin/dcmedit bin/dcminfo bin/dirflip bin/dirgen bin/dirmerge bin/dirorder bin/dirsplit bin/dirstat bin/dwi2adc bin/dwi2fod bin/dwi2mask bin/dwi2tensor bin/dwidenoise bin/dwiextract bin/dwinormalise bin/fixel2sh bin/fixel2tsf bin/fixel2voxel bin/fixelcfestats bin/fixelconvert bin/fixelcorrespondence bin/fixelcrop bin/fixelreorient bin/fod2dec bin/fod2fixel bin/label2colour bin/label2mesh bin/labelconvert bin/maskdump bin/maskfilter bin/mesh2voxel bin/meshconvert bin/meshfilter bin/mraverageheader bin/mrcalc bin/mrcat bin/mrcheckerboardmask bin/mrclusterstats bin/mrconvert bin/mrcrop bin/mrdegibbs bin/mrdump bin/mredit bin/mrfilter bin/mrhistmatch bin/mrhistogram bin/mrinfo bin/mrmath bin/mrmetric bin/mrpad bin/mrregister bin/mrresize bin/mrstats bin/mrthreshold bin/mrtransform bin/mrview bin/mtnormalise bin/peaks2amp bin/sh2amp bin/sh2peaks bin/sh2power bin/sh2response bin/shbasis bin/shconv bin/shview bin/tck2connectome bin/tck2fixel bin/tckconvert bin/tckdfc bin/tckedit bin/tckgen bin/tckglobal bin/tckinfo bin/tckmap bin/tckresample bin/tcksample bin/tcksift bin/tcksift2 bin/tckstats bin/tcktransform bin/tensor2metric bin/transformcalc bin/transformcompose bin/transformconvert bin/tsfdivide bin/tsfinfo bin/tsfmult bin/tsfsmooth bin/tsfthreshold bin/tsfvalidate bin/vectorstats bin/voxel2fixel bin/voxel2mesh bin/warp2metric bin/warpconvert bin/warpcorrect bin/warpinit bin/warpinvert
TODO list contains 505 items



  launching 4 threads

  g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o
moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/version.cpp -o tmp/core/version.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/projection.cpp -o tmp/src/gui/projection.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o
(  1/505) [CC] tmp/cmd/labelconvert.o
(  4/505) [MOC] tmp/src/gui/opengl/lighting_moc.cpp
(  3/505) [CC] tmp/src/dwi/directions/file.o
(  2/505) [CC] tmp/src/dwi/tractography/tracking/method.o
(  5/505) [CC] tmp/cmd/mrcalc.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from ./core/math/sphere.h:25,
                 from src/dwi/directions/file.h:19,
                 from src/dwi/directions/file.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(  6/505) [CC] tmp/core/version.o
(  7/505) [CC] tmp/src/gui/projection.o
(  8/505) [CC] tmp/cmd/mrdump.o
(  9/505) [CC] tmp/core/file/dicom/tree.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/labelconvert.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/labelconvert.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o
moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o
include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 10/505) [CC] tmp/src/registration/transform/rigid.o
( 11/505) [MOC] tmp/src/gui/shview/render_window_moc.cpp
( 12/505) [CC] tmp/src/dwi/tractography/resampling/upsampler.o
( 13/505) [CC] tmp/cmd/dirstat.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcalc.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcalc.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 14/505) [CC] tmp/src/gui/shapes/cylinder.o
( 15/505) [CC] tmp/cmd/mrconvert.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./cog++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o
re/command.h:24,
                 from cmd/dirstat.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirstat.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirstat.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'Metrics compute(Eigen::MatrixXd&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 16/505) [CC] tmp/src/dwi/tractography/mapping/mapper.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrdump.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member functg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o
ion 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrdump.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 17/505) [CC] tmp/cmd/dwiextract.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o:

In file included from /usr/include/c++/8/bits/stl_algo.h:61,
                 from /usr/include/c++/8/algorithm:62,
                 from ./core/mrtrix.h:25,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper.h:20,
                 from src/dwi/tractography/mapping/mapper.cpp:16:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper.h:20,
                 from src/dwi/tractography/mapping/mapper.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper.h:20,
                 from src/dwi/tractography/mapping/mapper.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void MR::DWI::Tractography::Mapping::TrackMapperTWI::load_factors(const MR::DWI::Tractography::Streamline<>&) const':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper.h:20,
                 from src/dwi/tractography/mapping/mapper.cpp:16:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper.h:20,
                 from src/dwi/tractography/mapping/mapper.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argumeg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/app.cpp -o tmp/core/app.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o
nt of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper.h:20,
                 from src/dwi/tractography/mapping/mapper.cpp:16:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 18/505) [CC] tmp/src/dwi/directions/set.o
( 19/505) [CC] tmp/core/file/dicom/dict.o
( 20/505) [CC] tmp/core/image_io/default.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwiextract.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwiextract.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 21/505) [CC] tmp/core/app.o
( 22/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o
( 23/505) [CC] tmp/cmd/tsfmult.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o
Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/app.cpp -o tmp/core/app.o:

In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/app.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/app.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In function 'void __static_initialization_and_destruction_0(int, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 24/505) [CC] tmp/cmd/warpinvert.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfmult.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfmult.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iteratorg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o
<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 25/505) [CC] tmp/core/formats/xds.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/xds.cpp -o tmp/core/formats/xds.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/file/ofstream.h:23,
                 from core/formats/xds.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::XDS::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::XDS::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 26/505) [CC] tmp/src/surface/algo/mesh2image.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpinvert.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpinvert.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'vg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o
moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o
oid usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~



g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/surface/algo/mesh2image.h:20,
                 from src/surface/algo/mesh2image.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void MR::Surface::Algo::mesh2image(const MR::Surface::Mesh&, MR::Image<float>&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 27/505) [CC] tmp/src/connectome/lut.o
( 28/505) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp
( 29/505) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o
( 30/505) [CC] tmp/cmd/fod2dec.o
( 31/505) [CC] tmp/src/gui/mrview/mode/volume.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformoc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o
mat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fod2dec.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fod2dec.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 32/505) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp
( 33/505) [CC] tmp/cmd/mrmetric.o
( 34/505) [CC] tmp/src/gui/mrview/tool/odf/item.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -Dg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/gui.cpp -o tmp/src/gui/gui.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o
QT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/shells.h:23,
                 from src/gui/mrview/tool/odf/item.h:21,
                 from src/gui/mrview/tool/odf/item.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 35/505) [CC] tmp/src/gui/gui.o
( 36/505) [CC] tmp/cmd/mrcheckerboardmask.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcheckerboardmask.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcheckerboardmask.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/ig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o
nclude/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 37/505) [CC] tmp/src/gui/mrview/tool/base.o
( 38/505) [CC] tmp/src/surface/freesurfer.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o:

src/surface/freesurfer.cpp: In function 'void MR::Surface::FreeSurfer::read_label(const string&, MR::Surface::VertexList&, MR::Surface::Scalar&)':
src/surface/freesurfer.cpp:144:21: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'Eigen::EigenBase<Eigen::Array<double, -1, 1> >::Index' {aka 'int'} [-Wsign-compare]
           if (index >= scalar.size()) {
               ~~~~~~^~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/raw.h:24,
                 from src/surface/freesurfer.h:22,
                 from src/surface/freesurfer.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/raw.h:24,
                 from src/surface/freesurfer.h:22,
                 from src/surface/freesurfer.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::Surface::FreeSurfer::read_label(const string&, MR::Surface::VertexList&, MR::Surface::Scalar&)':
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~


( 39/505) [CC] tmp/core/phase_encoding.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o:

In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/phase_encoding.h:22,
                 from core/phase_encoding.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: notmoc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o
e: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/phase_encoding.h:22,
                 from core/phase_encoding.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/phase_encoding.h:22,
                 from core/phase_encoding.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 40/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp
( 41/505) [CC] tmp/src/surface/mesh_multi.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/connectome/connectome.h:22,
                 from src/surface/types.h:20,
                 from src/surface/mesh_multi.h:20,
                 from src/surface/mesh_multi.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/ing++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/ram.cpp -o tmp/core/image_io/ram.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o
clude/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void MR::Surface::MeshMulti::load(const string&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 42/505) [CC] tmp/cmd/mrthreshold.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrthreshold.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrthreshold.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 43/505) [CC] tmp/core/image_io/ram.o
( 44/505) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o
( 45/505) [CC] tmp/cmd/tckmap.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrconvert.cmoc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/SH.cpp -o tmp/core/math/SH.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o
pp -o tmp/cmd/mrconvert.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/axes.h:22,
                 from cmd/mrconvert.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/axes.h:22,
                 from cmd/mrconvert.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 46/505) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp
( 47/505) [CC] tmp/src/registration/transform/initialiser.o
( 48/505) [CC] tmp/core/math/SH.o
( 49/505) [CC] tmp/cmd/tckdfc.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckdfc.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckdfc.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.hg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/color_button.cpp -o tmp/src/gui/color_button.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o
:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 50/505) [CC] tmp/src/gui/mrview/tool/connectome/node.o
( 51/505) [CC] tmp/src/gui/color_button.o
( 52/505) [CC] tmp/cmd/5ttedit.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/5ttedit.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/5ttedit.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 53/505) [CC] tmp/src/dwi/tractography/roi.o

g++ -c -std=c++11g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o
 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/roi.h:19,
                 from src/dwi/tractography/properties.h:21,
                 from src/dwi/tractography/roi.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/roi.h:19,
                 from src/dwi/tractography/properties.h:21,
                 from src/dwi/tractography/roi.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 54/505) [CC] tmp/cmd/dirgen.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirgen.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirgen.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/sg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o
tl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 55/505) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o
( 56/505) [CC] tmp/cmd/dirmerge.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirmerge.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirmerge.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o
file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirmerge.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OutDir}; _Tp = OutDir; _Alloc = std::allocator<OutDir>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<OutDir, std::allocator<OutDir> >::iterator' {aka '__gnu_cxx::__normal_iterator<OutDir*, std::vector<OutDir, std::allocator<OutDir> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In function 'void run()':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutDir*, std::vector<OutDir, std::allocator<OutDir> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutDir*, std::vector<OutDir, std::allocator<OutDir> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 57/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from src/gui/mrview/tool/tractography/tractography.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MRg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o
::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from src/gui/mrview/tool/tractography/tractography.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void MR::GUI::MRView::Tool::Tractography::add_commandline_options(MR::App::OptionList&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 58/505) [CC] tmp/cmd/mrclusterstats.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrclusterstats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrclusterstats.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __xmoc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o
);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrclusterstats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 59/505) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp
( 60/505) [CC] tmp/src/dwi/fmls.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from ./core/math/legendre.h:19,
                 from ./core/math/SH.h:19,
                 from src/dwi/fmls.h:22,
                 from src/dwi/fmls.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from ./core/math/legendre.h:19,
                 from ./core/math/SH.h:19,
                 from src/dwi/fmls.h:22,
                 from src/dwi/fmls.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from ./core/math/legendre.h:19,
                 from ./core/math/SH.h:19,
                 from src/dwi/fmls.h:22,
                 from src/dwi/fmls.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = MR::DWI::FMLS::FOD_lobe; _Alloc = std::allocator<MR::DWI::FMLS::FOD_lobe>]':
/usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type 'std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWI::FMLS::FOD_lobe> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::FMLS::FOD_lobe*, std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWI::FMLS::FOD_lobe> > >'} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::DWI::FMLS::FOD_lobe}; _Tp = MR::DWI::FMLS::FOD_lobe; _Alloc = std::allocator<MR::DWI::FMLS::FOD_lobe>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWI::FMLS::FOD_lobe> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::FMLS::FOD_lobe*, std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWI::FMLS::FOD_lobe> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::FMLS::FOD_lobe}; _Tp = MR::DWI::FMLS::FOD_lobe; _Alloc = std::allocator<MR::DWI::FMLS::FOD_lobe>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::FMLS::FOD_lobe*, std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWIg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o
::FMLS::FOD_lobe> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from ./core/math/legendre.h:19,
                 from ./core/math/SH.h:19,
                 from src/dwi/fmls.h:22,
                 from src/dwi/fmls.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool MR::DWI::FMLS::Segmenter::operator()(const MR::DWI::FMLS::SH_coefs&, MR::DWI::FMLS::FOD_lobes&) const':
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
    _M_range_insert(__pos, __first, __last,
    ^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
    _M_range_insert(__pos, __first, __last,
    ^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::FMLS::FOD_lobe*, std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWI::FMLS::FOD_lobe> > >' changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::FMLS::FOD_lobe*, std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWI::FMLS::FOD_lobe> > >' changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^
/usr/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::FMLS::FOD_lobe*, std::vector<MR::DWI::FMLS::FOD_lobe, std::allocator<MR::DWI::FMLS::FOD_lobe> > >' changed in GCC 7.1
       { return _M_erase(begin() + (__position - cbegin())); }
                                                          ^


( 61/505) [CC] tmp/src/surface/filter/vertex_transform.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/filter/vertex_transform.h:19,
                 from src/surface/filter/vertex_transform.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/filter/vertex_transform.h:19,
                 from src/surface/filter/vertex_transform.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void MR::Surface::Filter::VertexTransform::operator()(const MR::Surface::Mesh&, MR::Surface::Mesh&) const':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/filter/vertex_transform.h:19,
                 from src/surface/filter/vertex_transform.cpp:16:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/filter/vertex_transform.h:19,
                 from src/surface/filter/vertex_transform.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argumg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o
ent of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/filter/vertex_transform.h:19,
                 from src/surface/filter/vertex_transform.cpp:16:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/filter/vertex_transform.h:19,
                 from src/surface/filter/vertex_transform.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/filter/vertex_transform.h:19,
                 from src/surface/filter/vertex_transform.cpp:16:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 62/505) [CC] tmp/core/formats/nifti2_gz.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/file/utils.h:25,
                 from core/formats/nifti2_gz.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<Mg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o
R::File::Entry> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI2_GZ::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI2_GZ::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 63/505) [CC] tmp/src/stats/tfce.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/exception.h:23,
                 from ./core/thread_queue.h:22,
                 from src/stats/tfce.h:19,
                 from src/stats/tfce.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/exception.h:23,
                 from ./core/thread_queue.h:22,
                 from src/stats/tfce.h:19,
                 from src/stats/tfce.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'const MR::App::OptionGroup MR::Stats::TFCE::Options(MR::default_type, MR::default_type, MR::default_type)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 64/505) [CC] tmp/cmd/mrhistogram.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o:

In file included from /usr/include/c++/8/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o
vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrhistogram.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrhistogram.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrhistogram.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void run_volume(Functor&, MR::Image<float>&, MR::Image<bool>&) [with Functor = MR::Algo::Histogram::Calibrator]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 65/505) [CC] tmp/cmd/mrview.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/ig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o
nclude/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/mrview.cpp -o tmp/cmd/mrview.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/gui/gui.h:19,
                 from cmd/mrview.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/gui/gui.h:19,
                 from cmd/mrview.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 66/505) [CC] tmp/cmd/sh2amp.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2amp.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2amp.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter pasg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/dicom.cpp -o tmp/core/formats/dicom.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o
sing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2amp.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


( 67/505) [CC] tmp/core/file/nifti1_utils.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o:

core/file/nifti1_utils.cpp: In function 'void MR::File::NIfTI1::write(nifti_1_header&, const MR::Header&, bool)':
core/file/nifti1_utils.cpp:301:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 18 equals destination size [-Wstringop-truncation]
         strncpy ( (char*) &NH.db_name, comments.size() ? comments[0].c_str() : "untitled\0\0\0\0\0\0\0\0\0\0\0", 18);
         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


( 68/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o
( 69/505) [CC] tmp/core/formats/dicom.o
( 70/505) [CC] tmp/src/gui/dialog/image_properties_moc.o
( 71/505) [CC] tmp/cmd/maskdump.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/maskdump.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
              g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o
   from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/maskdump.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 72/505) [CC] tmp/cmd/meshfilter.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/meshfilter.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/meshfilter.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 73/505) [CC] tmp/src/gui/dialog/report_exception.o
( 74/505) [CC] tmp/src/dwi/tractography/editg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o
ing/editing.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/editing/editing.h:19,
                 from src/dwi/tractography/editing/editing.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/editing/editing.h:19,
                 from src/dwi/tractography/editing/editing.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 75/505) [CC] tmp/cmd/5ttcheck.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from cmd/5ttcheck.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from cmd/5ttcheck.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iteratrcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o
or<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 76/505) [RCC] tmp/src/gui/shview/icons.cpp
( 77/505) [CC] tmp/src/dwi/tractography/GT/particlegrid.o
( 78/505) [CC] tmp/src/gui/dialog/dialog.o
( 79/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o
( 80/505) [CC] tmp/cmd/mrdegibbs.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o:

In file included from /usr/include/c++/8/vector:69,
                 from /usr/include/eigen3/unsupported/Eigen/FFT:14,
                 from cmd/mrdegibbs.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from /usr/include/eigen3/unsupported/Eigen/FFT:14,
                 from cmd/mrdegibbs.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
                 from /usr/include/eigen3/unsupported/Eigen/FFT:15,
                 from cmd/mrdegibbs.cpp:16:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long int&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, Eigen::internal::fftw_plan<double> >; _KeyOfValue = std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
                 from /usr/include/eigen3/unsupported/Eigen/FFT:15,
                 from cmd/mrdegibbs.cpp:16:
/usr/include/c++/8/bits/stl_map.h: In member function 'void Eigen::internal::fftw_impl<_Scalar>::fwd(Eigen::internal::fftw_impl<_Scalar>::Complex*, const Complex*, int) [with _Scalar = double]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h: In member function 'void Eigen::FFT<T_Scalar, T_Impl>::inv(Eigen::FFT<T_Scalar, T_Impl>::Complex*, const Complex*, Eigen::FFT<T_Scalar, T_Impl>::Index) [with T_Scalar = double; T_Impl = Eigen::default_fft_impl<double>]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h: In member function 'void Eigen::FFT<T_Scalar, T_Impl>::fwd(Eigen::MatrixBase<OtherDerived>&, const Eigen::MatrixBase<OtherDerived>&, Eigen::FFT<T_Scalar, T_Impl>::Index) [with InputDerived = Eigen::Matrix<std::complex<double>, -1, 1>; ComplexDerived = Eigen::Matrix<std::complex<double>, -1, 1>; T_Scalar = double; T_Impl = Eigen::default_fft_impl<double>]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/includg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o
e/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h: In member function 'void ComputeSlice::operator()(const MR::Iterator&)':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,


( 81/505) [CC] tmp/src/surface/filter/smooth.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/filter/smooth.h:19,
                 from src/surface/filter/smooth.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vecg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o
tor.tcc: In member function 'virtual void MR::Surface::Filter::Smooth::operator()(const MR::Surface::Mesh&, MR::Surface::Mesh&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/filter/smooth.h:19,
                 from src/surface/filter/smooth.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/filter/smooth.h:19,
                 from src/surface/filter/smooth.cpp:16:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/filter/smooth.h:19,
                 from src/surface/filter/smooth.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 82/505) [CC] tmp/src/dwi/tractography/rng.o
( 83/505) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckmap.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o
8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckmap.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 84/505) [CC] tmp/src/gui/mrview/displayable.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/bitset.h:22,
                 from src/dwi/tractography/SIFT2/tckfactor.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::DWI::Tractography::SIFT2::Fixel&}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator<MR::DWI::Tractography::SIFT2::Fixel>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator<MR::DWI::Tractography::SIFT2::Fixel>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void MR::DWI::Tracg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o
moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o
tography::SIFT::Model<Fixel>::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/bitset.h:22,
                 from src/dwi/tractography/SIFT2/tckfactor.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 85/505) [CC] tmp/src/gui/shview/render_window_moc.o
( 86/505) [CC] tmp/src/dwi/tractography/GT/externalenergy.o
( 87/505) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp
( 88/505) [CC] tmp/src/dwi/tractography/connectome/extract.o
( 89/505) [CC] tmp/src/gui/mrview/colourmap_button.o
( 90/505) [CC] tmp/src/gui/mrview/tool/odf/odf.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/GT/externalenergy.h:19,
                 from src/dwi/tractography/GT/externalenergy.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/GT/externalenergy.h:19,
                 from src/dwi/tractography/GT/externalenergy.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'double MR::DWI::Tractography::GT::ExternalEnergyComputer::eval()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 91/505) [CC] tmp/src/dwi/directions/predefined.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/build/mrtrixg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o
3-6j8ItB/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from src/gui/mrview/tool/odf/odf.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from src/gui/mrview/tool/odf/odf.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void MR::GUI::MRView::Tool::ODF::add_commandline_options(MR::App::OptionList&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 92/505) [CC] tmp/cmd/mrstats.o
( 93/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o
( 94/505) [CC] tmp/src/dwi/tractography/editing/receiver.o
( 95/505) [CC] tmp/core/image_io/mosaic.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrstats.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permstack.cpp -o tmp/src/stats/permstack.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o
ector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrstats.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


( 96/505) [CC] tmp/src/dwi/tractography/seeding/basic.o
( 97/505) [CC] tmp/src/gui/opengl/lighting_moc.o
( 98/505) [CC] tmp/cmd/tckinfo.o
( 99/505) [CC] tmp/src/stats/permstack.o
(100/505) [CC] tmp/cmd/dirsplit.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckinfo.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckinfo.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(101/505) [CC] tmp/src/gui/mrview/tool/odf/model.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirsplit.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vectg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o
moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o
or.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirsplit.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(102/505) [CC] tmp/core/file/dicom/series.o
(103/505) [CC] tmp/cmd/tckglobal.o
(104/505) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp
(105/505) [CC] tmp/core/formats/nifti1.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/file/ofstream.h:23,
                 from core/formats/nifti1.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI1::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI1::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o
7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(106/505) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o
(107/505) [CC] tmp/src/gui/shapes/sphere.o
(108/505) [CC] tmp/core/formats/mri.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckglobal.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckglobal.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckglobal.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::DWI::Tractography::GT::ParticleEnd&}; _Tp = MR::DWI::Tractography::GT::ParticleEnd; _Alloc = std::allocator<MR::DWI::Tractography::GT::ParticleEnd>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::GT::ParticleEnd, std::allocator<MR::DWI::Tractography::GT::ParticleEnd> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::GT::ParticleEnd*, std::vector<MR::DWI::Tractography::GT::ParticleEnd, std::allocator<MR::DWI::Tractography::GT::ParticleEnd> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckglobal.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vectg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o
or<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void run()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::GT::ParticleEnd*, std::vector<MR::DWI::Tractography::GT::ParticleEnd, std::allocator<MR::DWI::Tractography::GT::ParticleEnd> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(109/505) [CC] tmp/cmd/dwi2adc.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mri.cpp -o tmp/core/formats/mri.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/file/key_value.h:20,
                 from ./core/file/config.h:20,
                 from core/formats/mri.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRI::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRI::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(110/505) [CC] tmp/core/math/average_space.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2adc.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocatg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/gradient.cpp -o tmp/src/dwi/gradient.o
or<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2adc.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(111/505) [CC] tmp/src/dwi/gradient.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/gradient.cpp -o tmp/src/dwi/gradient.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/gradient.h:26,
                 from src/dwi/gradient.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/gradient.h:26,
                 from src/dwi/gradient.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'MR::App::OptionGroup MR::DWI::GradImportOptions(bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passingg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o
 for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'MR::App::OptionGroup MR::DWI::GradExportOptions()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/gradient.h:26,
                 from src/dwi/gradient.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(112/505) [CC] tmp/cmd/mrfilter.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrfilter.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrfilter.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrfilter.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
                 from ./core/header.h:19,
                 from ./core/image.h:24,
                 from cmd/mrfilter.cpp:19:
/usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long int&>, std::tuple<>}; _Key = long long int; _Val = std::pair<const long long int, Eigen::internal::fftw_plan<double> >; _KeyOfValue = std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >; _Compare = std::less<long long int>; _Alloc = std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
                 from ./core/header.h:19,
                 from ./core/image.h:24,
                 from cmd/mrfilter.cpp:19:
/usr/include/c++/8/bits/stl_map.h: In member fung++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o
ction 'void Eigen::FFT<T_Scalar, T_Impl>::inv(Eigen::MatrixBase<OtherDerived>&, const Eigen::MatrixBase<OtherDerived>&, Eigen::FFT<T_Scalar, T_Impl>::Index) [with OutputDerived = Eigen::Matrix<std::complex<double>, -1, 1>; ComplexDerived = Eigen::Matrix<std::complex<double>, -1, 1>; T_Scalar = double; T_Impl = Eigen::default_fft_impl<double>]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h: In member function 'void MR::Filter::FFT::FFTKernel<ComplexImageType>::operator()(const MR::Iterator&) [with ComplexImageType = MR::Image<std::complex<double> >]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long int, std::pair<const long long int, Eigen::internal::fftw_plan<double> >, std::_Select1st<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >, std::less<long long int>, std::allocator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long int, Eigen::internal::fftw_plan<double> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrfilter.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void run()':
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~


(113/505) [CC] tmp/src/dwi/tractography/ACT/act.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o:

In file included from /usr/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o
include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/ACT/act.h:19,
                 from src/dwi/tractography/ACT/act.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/ACT/act.h:19,
                 from src/dwi/tractography/ACT/act.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void __static_initialization_and_destruction_0(int, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(114/505) [CC] tmp/core/file/dicom/element.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/file/path.h:28,
                 from core/file/dicom/element.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'MR::vector<double> MR::File::Dicom::Element::get_float() const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(115/505) [CC] tmp/src/dwi/tractography/editing/worker.o
(116/505) [CC] tmp/cmd/tsfthreshold.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o:

In file inclug++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o
ded from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfthreshold.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfthreshold.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(117/505) [CC] tmp/src/gui/mrview/combo_box_error.o
(118/505) [CC] tmp/cmd/meshconvert.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/meshconvert.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/meshconvert.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o
'__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(119/505) [CC] tmp/src/registration/nonlinear.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrmetric.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrmetric.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iteratog++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o
r<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrmetric.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(120/505) [CC] tmp/cmd/amp2response.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/nonlinear.h:19,
                 from src/registration/nonlinear.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/nonlinear.h:19,
                 from src/registration/nonling++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/name_parser.cpp -o tmp/core/file/name_parser.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o
ear.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(121/505) [CC] tmp/core/file/name_parser.o
(122/505) [CC] tmp/cmd/tck2connectome.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o:

In file included from cmd/tck2connectome.cpp:28:
src/dwi/tractography/connectome/metric.h: In member function 'void MR::DWI::Tractography::Connectome::Metric::set_scale_invnodevol(MR::Image<unsigned int>&, bool)':
src/dwi/tractography/connectome/metric.h:109:19: warning: comparison of integer expressions of different signedness: 'const node_t' {aka 'const unsigned int'} and 'Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index' {aka 'int'} [-Wsign-compare]
         if (index >= node_volumes.size())
             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tck2connectome.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tck2connectome.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(123/505) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o
(124/5g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o
05) [CC] tmp/src/dwi/tractography/seeding/list.o
(125/505) [CC] tmp/cmd/maskfilter.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/maskfilter.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/maskfilter.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(126/505) [CC] tmp/core/stats.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/amp2response.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o
{const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/amp2response.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(127/505) [CC] tmp/src/gui/mrview/gui_image.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o:

In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/stats.h:20,
                 from core/stats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 frg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrresize.cpp -o tmp/cmd/mrresize.o
om core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/stats.h:20,
                 from core/stats.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(128/505) [CC] tmp/src/dwi/tractography/mapping/mapping.o
(129/505) [CC] tmp/src/gui/mrview/window.o
(130/505) [CC] tmp/cmd/mrresize.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/gui/mrview/window.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/gui/mrview/window.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/gui/mrview/window.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void MR::GUI::MRView::Window::paintGL()':
/usr/include/c++/8/bits/vector.tcc:109:4: ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o
ote: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(131/505) [CC] tmp/src/gui/mrview/volume.o
(132/505) [CC] tmp/core/formats/mrtrix_gz.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/file/utils.h:25,
                 from core/formats/mrtrix_gz.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRtrix_GZ::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRtrix_GZ::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(133/505) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrresize.cpp -o tmp/cmd/mrresize.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrresize.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/cursor.cpp -o tmp/src/gui/cursor.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o
::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrresize.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void run()':
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~


(134/505) [CC] tmp/src/gui/cursor.o
(135/505) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o
(136/505) [CC] tmp/src/dwi/tractography/tracking/tractography.o
(137/505) [CC] tmp/src/dwi/tractography/SIFT/sifter.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o
tractography.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/tracking/tractography.h:19,
                 from src/dwi/tractography/tracking/tractography.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/tracking/tractography.h:19,
                 from src/dwi/tractography/tracking/tractography.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(138/505) [CC] tmp/src/gui/mrview/mode/slice.o
(139/505) [CC] tmp/core/file/dicom/patient.o
(140/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o
(141/505) [CC] tmp/core/formats/mrtrix.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from core/formats/mrtrix.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRtrix::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_reag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o
lloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRtrix::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(142/505) [CC] tmp/src/gui/mrview/adjust_button.o
(143/505) [CC] tmp/cmd/5tt2gmwmi.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/5tt2gmwmi.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/5tt2gmwmi.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(144/505) [CC] tmp/cmd/warpinit.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o:

src/gui/mrview/tool/connectome/connectome.cpp: In member function 'void MR::GUI::MRView::Tool::Connectome::add_matrices(const MR::vector<std::__cxx11::basic_string<char> >&)':
src/gui/mrview/tool/connectome/connectome.cpp:2332:33: warning: comparison of integer expressions of different signedness: 'Eigen::Index' {aka 'int'} and 'MR::Connectome::node_t' {aka 'unsigned int'} [-Wsign-compare]
               if (matrix.rows() != num_nodes())
                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
src/gui/mrview/tool/connectome/connectome.cpp: In member function 'bool MR::GUI::MRView::Tool::Connectome::import_vector_file(MR::GUI::MRView::Tool::FileDataVector&, const string&)':
src/gui/mrview/tool/connectome/connectome.cpp:2703:29: warning: comparison of integer expressions of different signedness: 'Eigen::EigenBase<Eigen::Matrix<float, -1, 1> >::Index' {aka 'int'} and 'MR::Connectome::node_t' {aka 'unsigned int'} [-Wsign-compare]
             if (data.size() != num_nodes()) {
                 ~~~~~~~~~~~~^~~~~~~~~~~~~~
src/gui/mrview/tool/connectome/connectome.cpp: In member function 'bool MR::GUI::MRView::Tool::Connectome::import_matrix_file(MR::GUI::MRView::Tool::FileDataVector&, const string&)':
src/gui/mrview/tool/connectome/connectome.cpp:2726:29: warning: comparison of integer expressions of different signedness: 'Eigen::Index' {aka 'int'} and 'MR::Connectome::node_t' {aka 'unsigned int'} [-Wsign-compare]
             if (temp.rows() != num_nodes())
                 ~~~~~~~~~~~~^~~~~~~~~~~~~~
In file included from src/gui/mrview/tool/connectome/types.h:19,
                 from src/gui/mrview/tool/connectome/connectome.h:23,
                 from src/gui/mrview/tool/connectome/connectome.cpp:16:
src/connectome/connectome.h: In instantiation of 'void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array<double, -1, -1>]':
src/gui/mrview/tool/connectome/connectome.cpp:2331:47:   required from here
src/connectome/connectome.h:107:32: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
       for (node_t row = 0; row != in.rows(); ++row) {
src/connectome/connectome.h:108:38: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
         for (node_t col = row+1; col != in.cols(); ++col) {
src/connectome/connectome.h: In instantiation of 'bool MR::Connectome::is_directed(MatrixType&) [with MatrixType = Eigen::Array<double, -1, -1>]':
src/connectome/connectome.h:104:23:   required from 'void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array<double, -1, -1>]'
src/gui/mrview/tool/connectome/connectome.cpp:2331:47:   required from here
src/connectome/connectome.h:63:32: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
       for (node_t row = 0; row != in.rows(); ++row) {
src/connectome/connectome.h:64:38: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
         for (node_t col = row+1; col != in.cols(); ++col) {
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/bitset.h:22,
                 from src/gui/mrview/tool/connectome/connectome.h:21,
                 from src/gui/mrview/tool/connectome/connectome.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&};g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/progressbar.cpp -o tmp/core/progressbar.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o
 _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/bitset.h:22,
                 from src/gui/mrview/tool/connectome/connectome.h:21,
                 from src/gui/mrview/tool/connectome/connectome.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void MR::GUI::MRView::Tool::Connectome::add_commandline_options(MR::App::OptionList&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/bitset.h:22,
                 from src/gui/mrview/tool/connectome/connectome.h:21,
                 from src/gui/mrview/tool/connectome/connectome.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(145/505) [CC] tmp/core/progressbar.o
(146/505) [CC] tmp/src/gui/dialog/image_properties.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpinit.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argumoc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o
moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o
ment, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpinit.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(147/505) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp
(148/505) [CC] tmp/cmd/tckresample.o
(149/505) [CC] tmp/src/dwi/tractography/connectome/matrix.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckresample.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckresample.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(150/505) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp
(151/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o
p/src/dwi/tractography/connectome/matrix.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from src/dwi/tractography/connectome/matrix.h:21,
                 from src/dwi/tractography/connectome/matrix.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from src/dwi/tractography/connectome/matrix.h:21,
                 from src/dwi/tractography/connectome/matrix.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function '(static initializers for src/dwi/tractography/connectome/matrix.cpp)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(152/505) [CC] tmp/core/file/dicom/select_cmdline.o
(153/505) [CC] tmp/cmd/tcksift.o
(154/505) [CC] tmp/src/gui/shview/render_window.o
(155/505) [CC] tmp/cmd/mesh2voxel.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mesh2voxel.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mesh2voxel.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passingg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o
 for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(156/505) [CC] tmp/src/connectome/enhance.o
(157/505) [CC] tmp/src/surface/scalar.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/scalar.h:20,
                 from src/surface/scalar.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(158/505) [CC] tmp/src/gui/dialog/progress.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksift.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::DWI::Tractography::SIFT::Fixel&}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator<MR::DWI::Tractography::SIFT::Fixel>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::SIFT::Fixel, std::allocator<MR::DWI::Tractography::SIFT::Fixel> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Fixel*, std::vector<MR::DWI::Tractography::SIFT::Fixel, std::allocator<MR::DWI::Tractography::SIFT::Fixel> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksift.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksift.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator<MR::DWI::Tractography::SIFT::Fixel>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::SIFT::Fixel, std::allocator<MR::DWI::Tractography::SIFT::Fixel> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Fixel*, std::vector<MR::DWI::Tractography::SIFT::Fixel, std::allocator<MR::DWI::Tractography::SIFT::Fixel> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator<MR::DWI::Tractography::SIFT::Fixel>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Fixel*, std::vector<MR::DWI::Tractography::SIFT::Fixel, std::allocator<MR::DWI::Tractography::SIFT::Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'bool MR::DWI::Fixel_map<Fixel>::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Fixel*, std::vector<MR::DWI::Tractography::SIFT::Fixel, std::allocator<MR::DWI::Tractography::SIFT::Fixel> > >' changed in GCC 7.1
    _M_realloc_ing++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o
sert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksift.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void MR::DWI::Tractography::SIFT::Model<Fixel>::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Fixel*, std::vector<MR::DWI::Tractography::SIFT::Fixel, std::allocator<MR::DWI::Tractography::SIFT::Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(159/505) [CC] tmp/core/file/dicom/study.o
(160/505) [CC] tmp/core/file/nifti2_utils.o
(161/505) [CC] tmp/core/signal_handler.o
(162/505) [CC] tmp/cmd/mrhistmatch.o
(163/505) [CC] tmp/cmd/sh2response.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrhistmatch.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrhistmatch.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normalg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o
_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrhistmatch.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void MR::Algo::Histogram::calibrate(MR::Algo::Histogram::Calibrator&, ImageType&) [with ImageType = MR::Image<float>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void MR::Algo::Histogram::calibrate(MR::Algo::Histogram::Calibrator&, ImageType&, MaskType&) [with ImageType = MR::Image<float>; MaskType = MR::Image<bool>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(164/505) [CC] tmp/cmd/5tt2vis.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/5tt2vis.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o
h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/5tt2vis.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(165/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2response.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2response.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcrop.cpp -o tmp/cmd/mrcrop.o
loc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(166/505) [CC] tmp/cmd/fixelconvert.o
(167/505) [CC] tmp/cmd/mrcrop.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelconvert.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelconvert.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(),g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/bitset.cpp -o tmp/core/bitset.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o
 __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelconvert.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In function 'void convert_new2old()':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(168/505) [CC] tmp/core/bitset.o
(169/505) [CC] tmp/cmd/connectomestats.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcrop.cpp -o tmp/cmd/mrcrop.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcrop.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcrop.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(170/505) [Cg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o
C] tmp/cmd/tsfdivide.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o:

In file included from src/connectome/mat2vec.h:24,
                 from src/connectome/enhance.h:25,
                 from cmd/connectomestats.cpp:25:
src/connectome/connectome.h: In instantiation of 'void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array<double, -1, -1>]':
cmd/connectomestats.cpp:223:47:   required from here
src/connectome/connectome.h:107:32: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
       for (node_t row = 0; row != in.rows(); ++row) {
src/connectome/connectome.h:108:38: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
         for (node_t col = row+1; col != in.cols(); ++col) {
src/connectome/connectome.h: In instantiation of 'bool MR::Connectome::is_directed(MatrixType&) [with MatrixType = Eigen::Array<double, -1, -1>]':
src/connectome/connectome.h:104:23:   required from 'void MR::Connectome::to_upper(MatrixType&) [with MatrixType = Eigen::Array<double, -1, -1>]'
cmd/connectomestats.cpp:223:47:   required from here
src/connectome/connectome.h:63:32: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
       for (node_t row = 0; row != in.rows(); ++row) {
src/connectome/connectome.h:64:38: warning: comparison of integer expressions of different signedness: 'MR::Connectome::node_t' {aka 'unsigned int'} and 'Eigen::Index' {aka 'int'} [-Wsign-compare]
         for (node_t col = row+1; col != in.cols(); ++col) {
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/connectomestats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/connectomestats.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o
,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/connectomestats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(171/505) [CC] tmp/src/gui/mrview/tool/overlay.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfdivide.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfdivide.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(172/505) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o
(173/505) [CC] tmp/src/dwi/directions/mask.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=formag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o
t-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from ./core/math/versor.h:22,
                 from src/gui/mrview/mode/base.h:19,
                 from src/gui/mrview/tool/overlay.h:19,
                 from src/gui/mrview/tool/overlay.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from ./core/math/versor.h:22,
                 from src/gui/mrview/mode/base.h:19,
                 from src/gui/mrview/tool/overlay.h:19,
                 from src/gui/mrview/tool/overlay.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(174/505) [CC] tmp/src/gui/shview/icons.o
(175/505) [CC] tmp/src/stats/permtest.o
(176/505) [CC] tmp/cmd/dirflip.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/stats/permtest.h:22,
                 from src/stats/permtest.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/stats/permtest.h:22,
                 from src/stats/permtest.cpp:16:
/ug++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o
sr/include/c++/8/bits/stl_vector.h: In function 'const MR::App::OptionGroup MR::Stats::PermTest::Options(bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(177/505) [CC] tmp/cmd/fixel2tsf.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirflip.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirflip.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(178/505) [CC] tmp/cmd/tsfsmooth.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/sg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o
hare/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfsmooth.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfsmooth.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(179/505) [CC] tmp/src/dwi/tractography/GT/gt.o
(180/505) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixel2tsf.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o
h:27,
                 from ./core/command.h:24,
                 from cmd/fixel2tsf.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(181/505) [CC] tmp/src/registration/transform/initialiser_helpers.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from src/dwi/tractography/SIFT2/line_search.h:20,
                 from src/dwi/tractography/SIFT2/line_search.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel; _Alloc = std::allocator<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In constructor 'MR::DWI::Tractography::SIFT2::LineSearchFunctor::LineSearchFunctor(MR::DWI::Tractography::SIFT::track_t, const MR::DWI::Tractography::SIFT2::TckFactor&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::LineSearchFunctor::Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(182/505) [CC] tmp/cmd/tcksift2.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o:

In file included from /usr/include/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o
c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksift2.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksift2.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksift2.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator<MR::DWI::Tractography::SIFT2::Fixel>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'bool MR::DWI::Fixel_map<Fixel>::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In constructor 'MR::DWI::Fixel_map<Fixel>::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT2::Fixel*, std::vector<MR::DWI::Tractography::SIFT2::Fixel, std::allocator<MR::DWI::Tractography::SIFT2::Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(183/505) [CC] tmp/cmd/tcktransform.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-comg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o
pile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcktransform.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcktransform.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(184/505) [CC] tmp/src/gui/mrview/tool/screen_capture.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from src/gui/mrview/tool/screen_capture.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file ig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o
ncluded from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from src/gui/mrview/tool/screen_capture.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void MR::GUI::MRView::Tool::Capture::add_commandline_options(MR::App::OptionList&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(185/505) [CC] tmp/src/dwi/tractography/tracking/early_exit.o
(186/505) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o:

In file included from /usr/include/c++/8/bits/stl_algo.h:61,
                 from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/exception.h:23,
                 from ./core/thread_queue.h:22,
                 from src/dwi/tractography/SIFT/types.h:20,
                 from src/dwi/tractography/SIFT/gradient_sort.h:22,
                 from src/dwi/tractography/SIFT/gradient_sort.cpp:16:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >; _Distance = int; _Tp = MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/exception.h:23,
                 from ./core/thread_queue.h:22,
                 from src/dwi/tractography/SIFT/types.h:20,
                 from src/dwi/tractography/SIFT/gradient_sort.h:22,
                 from src/dwi/tractography/SIFT/gradient_sort.cpp:16:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o
moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o
ort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'bool MR::DWI::Tractography::SIFT::MT_gradient_vector_sorter::Sorter::operator()(const TrackIndexRange&, MR::DWI::Tractography::SIFT::MT_gradient_vector_sorter::VecItType&) const':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort*, std::vector<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort, std::allocator<MR::DWI::Tractography::SIFT::Cost_fn_gradient_sort> > >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~


(187/505) [CC] tmp/src/dwi/tractography/mapping/writer.o
(188/505) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp
(189/505) [CC] tmp/cmd/mtnormalise.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mtnormalise.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mtnormalise.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mtnormalise.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Image<float>&, MR::Header&}; _Tp = MR::Adapter::Replicate<MR::Image<float> >; _Alloc = Eigen::aligned_allocator<MR::Adapter::Replicate<MR::Image<float> > >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Adapter::Replicate<MR::Image<float> >, Eigen::aligned_allocator<MR::Adapter::Replicate<MR::Image<float> > > >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Adapter::Replicate<MR::Image<float> >*, std::vector<MR::Adapter::Replicate<MR::Image<float> >, Eigen::aligned_allocator<MR::Adapter::Replicate<MR::Image<float> > > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o
cc: In function 'void run_primitive() [with int poly_order = 0]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Adapter::Replicate<MR::Image<float> >*, std::vector<MR::Adapter::Replicate<MR::Image<float> >, Eigen::aligned_allocator<MR::Adapter::Replicate<MR::Image<float> > > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void run_primitive() [with int poly_order = 1]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Adapter::Replicate<MR::Image<float> >*, std::vector<MR::Adapter::Replicate<MR::Image<float> >, Eigen::aligned_allocator<MR::Adapter::Replicate<MR::Image<float> > > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void run_primitive() [with int poly_order = 2]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Adapter::Replicate<MR::Image<float> >*, std::vector<MR::Adapter::Replicate<MR::Image<float> >, Eigen::aligned_allocator<MR::Adapter::Replicate<MR::Image<float> > > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void run_primitive() [with int poly_order = 3]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Adapter::Replicate<MR::Image<float> >*, std::vector<MR::Adapter::Replicate<MR::Image<float> >, Eigen::aligned_allocator<MR::Adapter::Replicate<MR::Image<float> > > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(190/505) [CC] tmp/core/file/config.o
(191/505) [CC] tmp/src/dwi/tractography/GT/particle.o
(192/505) [CC] tmp/src/dwi/tractography/weights.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from src/dwi/tractography/weights.h:19,
                 from src/dwi/tractography/weights.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o
loc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from src/dwi/tractography/weights.h:19,
                 from src/dwi/tractography/weights.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(193/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/file/key_value.h:20,
                 from ./core/file/config.h:20,
                 from src/gui/mrview/tool/base.h:19,
                 from src/gui/mrview/tool/fixel/fixel.h:19,
                 from src/gui/mrview/tool/fixel/fixel.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/file/key_value.h:20,
                 from ./core/file/config.h:20,
                 from src/gui/mrview/tool/base.h:19,
                 from src/gui/mrview/tool/fixel/fixel.h:19,
                 from src/gui/mrview/tool/fixel/fixel.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void MR::GUI::MRView::Tool::Fixel::add_commandline_options(MR::App::OptionList&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(194/505) [CC] tmp/core/formag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/list.cpp -o tmp/core/formats/list.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o
ts/list.o
(195/505) [CC] tmp/src/dwi/tractography/file_base.o
(196/505) [CC] tmp/cmd/sh2power.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2power.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2power.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(197/505) [CC] tmp/cmd/fixel2voxel.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/apply.h:22,
                 from cmd/fixel2voxel.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/apply.h:22,
                 from cmd/fixel2voxel.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocatg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/exception.cpp -o tmp/core/exception.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o
or<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(198/505) [CC] tmp/core/exception.o
(199/505) [CC] tmp/core/formats/mgz.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/file/utils.h:25,
                 from core/formats/mgz.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MGZ::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MGZ::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(200/505) [CC] tmp/src/registration/transform/convergence_check.o
(201/505) [CC] tmp/cmd/tckstats.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o:

In file included frg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o
om /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckstats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckstats.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckstats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In function 'void run()':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(202/505) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o
(203/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void MR::DWI::Tractography::Mapping::TWDFCDynamicImagePlugin::load_factors(const MR::DWI::Tractography::Streamline<>&, MR::vector<double>&) const':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual void MR::DWI::Tractography::Mapping::TWIScalarImagePlugin::load_factors(const MR::DWI::Tractography::Streamline<>&, MR::vector<double>&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual void MR::DWI::Tractography::Mapping::TWIFODImagePlugin::load_factors(const MR::DWI::Tractography::Streamline<>&, MR::vector<double>&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/dwi/tractography/mapping/mapper_plugins.h:20,
                 from src/dwi/tractography/mapping/mapper_plugins.cpp:16:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(204/505) [CC] tmp/src/dwi/tractography/trg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o
moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o
acking/shared.o
(205/505) [CC] tmp/core/image_io/pipe.o
(206/505) [CC] tmp/core/image_io/tiff.o
(207/505) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o
(208/505) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp
(209/505) [CC] tmp/core/math/stats/glm.o
(210/505) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o
(211/505) [CC] tmp/src/dwi/tractography/SIFT/sift.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/SIFT/sift.h:19,
                 from src/dwi/tractography/SIFT/sift.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/SIFT/sift.h:19,
                 from src/dwi/tractography/SIFT/sift.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(212/505) [CC] tmp/cmd/shconv.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/shconv.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
  g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o
moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o
               from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/shconv.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(213/505) [CC] tmp/src/gui/dwi/renderer.o
(214/505) [CC] tmp/src/gui/opengl/shader.o
(215/505) [CC] tmp/src/gui/opengl/lighting.o
(216/505) [CC] tmp/core/adapter/reslice.o
(217/505) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp
(218/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o
(219/505) [CC] tmp/core/formats/mrtrix_sparse_legacy.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from core/formats/mrtrix_sparse_legacy.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRtrix_sparse::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MRtrix_sparse::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o
220/505) [CC] tmp/core/file/json_utils.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o:

In file included from /usr/include/c++/8/map:60,
                 from ./core/file/json.h:50,
                 from ./core/file/json_utils.h:19,
                 from core/file/json_utils.cpp:18:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
                 from ./core/file/json.h:50,
                 from ./core/file/json_utils.h:19,
                 from core/file/json_utils.cpp:18:
/usr/include/c++/8/bits/stl_map.h: In member function 'nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/8/bits/stl_map.h: In function 'void MR::File::JSON::save(const MR::Header&, const string&)':
/usr/incg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o
lude/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:69,
                 from ./core/file/json.h:57,
                 from ./core/file/json_utils.h:19,
                 from core/file/json_utils.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator' {aka '__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(221/505) [CC] tmp/core/file/mmap.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mmap.cpp -o tmp/core/file/mmap.o:

core/file/mmap.cpp: In constructor 'MR::File::MMap::MMap(const MR::File::Entry&, bool, bool, int64_t)':
core/file/mmap.cpp:114:26: warning: comparison of integer expressions of different signedness: '__fsword_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
         if (fsbuf.f_type == 0xff534d42 /* CIFS */|| fsbuf.f_type == 0x6969 /* NFS */ ||
             ~~~~~~~~~~~~~^~~~~~~~~~~~~


(222/505) [CC] tmp/cmd/tckconvert.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o:

In file included from /usr/include/c++/8/vector:69,
            g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o
     from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckconvert.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckconvert.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(223/505) [CC] tmp/src/registration/linear.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/linear.cpp -o tmp/src/registration/linear.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/registration/linear.h:21,
                 from src/registration/linear.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/registration/linear.h:21,
                 from src/registration/linear.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std:g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o
:vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(224/505) [CC] tmp/cmd/transformcalc.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformcalc.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformcalc.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformcalc.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tccg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o
:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(225/505) [CC] tmp/cmd/fixelcrop.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelcrop.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelcrop.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelcrop.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void run()':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::fg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o
moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o
rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o
orward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(226/505) [CC] tmp/cmd/warpconvert.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpconvert.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpconvert.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(227/505) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp
(228/505) [CC] tmp/src/gui/mrview/tool/overlay_moc.o
(229/505) [CC] tmp/src/gui/opengl/gl.o
(230/505) [RCC] tmp/src/gui/mrview/icons.cpp
(231/505) [CC] tmp/core/mrtrix.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o:

In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/mrtrix.cpp:16:
/usr/include/c++/8/bits/vecg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o
tor.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/mrtrix.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'MR::vector<double> MR::parse_floats(const string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(232/505) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o
(233/505) [CC] tmp/cmd/dcminfo.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dcminfo.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dcminfo.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o
' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(234/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/transform.h:19,
                 from src/gui/mrview/tool/roi_editor/roi.h:20,
                 from src/gui/mrview/tool/roi_editor/roi.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/transform.h:19,
                 from src/gui/mrview/tool/roi_editor/roi.h:20,
                 from src/gui/mrview/tool/roi_editor/roi.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void MR::GUI::MRView::Tool::ROI::add_commandline_options(MR::App::OptionList&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(235/505) [CC] tmp/cmd/mrmath.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/transform.h:19,
                 from ./core/math/average_space.h:22,
                 from core/math/average_space.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Transform<double, 3, 32, 0>&}; _Tp = Eigen::Transform<double, 3, 32>; _Alloc = Eigen::aligned_allg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o
ocator<Eigen::Transform<double, 3, 32> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 32>*, std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/transform.h:19,
                 from ./core/math/average_space.h:22,
                 from core/math/average_space.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::compute_average_voxel2scanner(Eigen::Transform<double, 3, 32>&, Eigen::Vector3d&, Eigen::Vector3d&, const MR::vector<MR::Header>&, const Eigen::Matrix<double, 4, 1>&, const MR::vector<Eigen::Transform<double, 3, 32> >&, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 32>*, std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(236/505) [CC] tmp/src/gui/shapes/cube.o
(237/505) [CC] tmp/src/surface/mesh.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o:

src/surface/mesh.cpp: In member function 'void MR::Surface::Mesh::save_stl(const string&, bool) const':
src/surface/mesh.cpp:660:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 80 equals destination size [-Wstringop-truncation]
         strncpy (header, string.c_str(), 80);
         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/mesh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/mesh.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void MR::Surface::Mesh::load_quad_vertices(MR::Surface::VertexList&, size_t) const':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h: In member function 'void MR::Surface::Mesh::load_triangle_vertices(MR::Surface::VertexList&, size_t) const':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h: In member function 'void MR::Surface::Mesh::load_vtk(const string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/mesh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Matrix<double, 3, 1, 0, 3, 1>}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o
moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o
moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/shells.cpp -o tmp/src/dwi/shells.o
, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/mesh.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void MR::Surface::Mesh::load_stl(const string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/surface/mesh.h:23,
                 from src/surface/mesh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void MR::Surface::Mesh::load_fs(const string&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(238/505) [CC] tmp/src/gui/dialog/dicom.o
(239/505) [CC] tmp/core/file/ofstream.o
(240/505) [CC] tmp/src/exec_version.o
(241/505) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp
(242/505) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o
(243/505) [CC] tmp/src/gui/dialog/list.o
(244/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o
(245/505) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp
(246/505) [CC] tmp/src/gui/dwi/render_frame_moc.o
(247/505) [CC] tmp/cmd/warpcorrect.o
(248/505) [CC] tmp/core/image_io/scratch.o
(249/505) [CC] tmp/src/dwi/shells.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpcorrect.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warpcorrect.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:108g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o
5:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(250/505) [CC] tmp/cmd/dcmedit.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/shells.cpp -o tmp/src/dwi/shells.o:

In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
     __unguarded_linear_insert(_RandomAccessIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
                 from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >; _Distance = int; _Tp = MR::DWI::Shell; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::DWI::Shell&}; _Tp = MR::DWI::Shell; _Alloc = std::allocator<MR::DWI::Shell>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::DWI::Shells& MR::DWI::Shells::select_shells(bool, bool, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::DWI::Shell}; _Tp = MR::DWI::Shell; _Alloc = std::allocator<MR::DWI::Shell>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In constructor 'MR::DWI::Shells::Shells(const MatrixXd&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of tg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o
ype '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Shell*, std::vector<MR::DWI::Shell, std::allocator<MR::DWI::Shell> > >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/math/math.h:22,
                 from src/dwi/shells.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function '(static initializers for src/dwi/shells.cpp)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(251/505) [CC] tmp/core/file/dicom/mapper.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dcmedit.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dcmedit.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Ag++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o
rgument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(252/505) [CC] tmp/core/formats/mgh.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from core/file/dicom/mapper.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'std::unique_ptr<MR::ImageIO::Base> MR::File::Dicom::dicom_to_mapper(MR::Header&, MR::vector<std::shared_ptr<MR::File::Dicom::Series> >&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(253/505) [CC] tmp/src/gui/mrview/mode/ortho_moc.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mgh.cpp -o tmp/core/formats/mgh.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from core/formats/mgh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tpg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o
moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o
, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MGH::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::MGH::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(254/505) [CC] tmp/cmd/fixelreorient.o
(255/505) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp
(256/505) [CC] tmp/cmd/tckgen.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrmath.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrmath.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o
~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(257/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelreorient.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelreorient.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelreorient.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/ing++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/axes.cpp -o tmp/core/axes.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/tiff.cpp -o tmp/core/file/tiff.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/datatype.cpp -o tmp/core/datatype.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/header.cpp -o tmp/core/header.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o
clude/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(258/505) [CC] tmp/core/axes.o
(259/505) [CC] tmp/core/file/tiff.o
(260/505) [CC] tmp/core/datatype.o
(261/505) [CC] tmp/core/header.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/datatype.cpp -o tmp/core/datatype.o:

In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/datatype.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/datatype.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static MR::App::OptionGroup MR::DataType::options()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(262/505) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from src/dwi/tractography/algorithms/iFOD2.h:21,
                 from src/dwi/tractography/algorithms/iFOD2.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from src/dwi/tractography/algorithms/iFOD2.h:21,
                 from src/dwi/tractography/algorithms/iFOD2.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o
moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp
::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(263/505) [CC] tmp/src/gui/shapes/halfsphere.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/header.cpp -o tmp/core/header.o:

In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/axes.h:22,
                 from core/header.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::File::Entry&}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from core/types.h:22,
                 from core/axes.h:22,
                 from core/header.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static MR::Header MR::Header::create(const string&, const MR::Header&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static MR::Header MR::Header::open(const string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(264/505) [CC] tmp/cmd/label2colour.o
(265/505) [MOC] tmp/src/gui/mrview/displayable_moc.cpp

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/label2colour.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file ig++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/permutation.cpp -o tmp/core/math/stats/permutation.o
ncluded from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/label2colour.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(266/505) [CC] tmp/cmd/mrtransform.o
(267/505) [CC] tmp/src/gui/mrview/displayable_moc.o
(268/505) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o
(269/505) [CC] tmp/src/gui/mrview/combo_box_error_moc.o
(270/505) [CC] tmp/src/gui/mrview/colourmap_button_moc.o
(271/505) [CC] tmp/core/math/stats/permutation.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/stats/permutation.cpp -o tmp/core/math/stats/permutation.o:

In file included from /usr/include/c++/8/bits/stl_algo.h:61,
                 from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/math/stats/permutation.h:19,
                 from core/math/stats/permutation.cpp:16:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/math/stats/permutation.h:19,
                 from core/math/stats/permutation.cpp:16:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/math/stats/permutation.h:19,
                 from core/math/stats/permutation.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/math/stats/permutation.h:19,
                 from core/math/stats/permutation.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::Math::Stats::Permutation::statistic2pvalue(const vector_type&, const vector_type&, MR::Math::Stats::Permutation::vector_type&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from ./core/types.h:75,
                 from ./core/math/stats/permutation.h:19,
                 from core/math/stats/permutation.cpp:16:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o
nu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~


(272/505) [CC] tmp/cmd/mrregister.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckgen.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckgen.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(273/505) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from src/dwi/tractography/SIFT/proc_mask.h:19,
                 from src/dwi/tractography/SIFT/proc_mask.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o
moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/analyse.cpp -o tmp/core/formats/analyse.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o
x::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from src/dwi/tractography/SIFT/proc_mask.h:19,
                 from src/dwi/tractography/SIFT/proc_mask.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(274/505) [CC] tmp/core/image_io/fetch_store.o
(275/505) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o
(276/505) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o
(277/505) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o
(278/505) [CC] tmp/src/dwi/tractography/properties.o
(279/505) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o
(280/505) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp
(281/505) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o
(282/505) [CC] tmp/src/gui/dwi/render_frame.o
(283/505) [CC] tmp/core/formats/analyse.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/analyse.cpp -o tmp/core/formats/analyse.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/file/ofstream.h:23,
                 from core/formats/analyse.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::Analyse::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::Analyse::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(284/505) [CC] tmp/core/algo/histogram.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o:

In file included from /usr/include/c++/8/bits/stl_algo.h:61,
                 from /usr/include/c++/8/algorithm:62,
                 from ./core/mrtrix.h:25,
                 from ./core/cmdline_option.h:27,
                 from ./core/datatype.h:19,
                 from ./core/image_helpers.h:19,
                 from ./core/algo/histogram.h:21,
                 from core/algo/histogram.cpp:16:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from ./core/mrtrix.h:25,
                 from ./core/cmdline_option.h:27,
                 from ./core/datatype.h:19,
                 from ./core/image_helpers.h:19,
                 from ./core/algo/histogram.h:21,
                 from core/algo/histogram.cpp:16:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1977:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
     __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
     ^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1977:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1977:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1977:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In member function 'MR::default_type MR::Algo::Histogram::Calibrator::get_iqr()':
/usr/include/c++/8/bits/stl_algo.h:4763:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::__introselect(__first, __nth, __last,
       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __gnu_cxx::__ops::__iter_less_iter());
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:4763:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
       std::__introselect(__first, __nth, __last,
       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __gnu_cxx::__ops::__iter_less_iter());
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 fg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o
rom ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/datatype.h:19,
                 from ./core/image_helpers.h:19,
                 from ./core/algo/histogram.h:21,
                 from core/algo/histogram.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/datatype.h:19,
                 from ./core/image_helpers.h:19,
                 from ./core/algo/histogram.h:21,
                 from core/algo/histogram.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/datatype.h:19,
                 from ./core/image_helpers.h:19,
                 from ./core/algo/histogram.h:21,
                 from core/algo/histogram.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(285/505) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o
(286/505) [CC] tmp/cmd/voxel2fixel.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/voxel2fixel.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Arg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o
gs = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/voxel2fixel.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(287/505) [CC] tmp/cmd/fixelcorrespondence.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelcorrespondence.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelcorrespondence.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/tiff.cpp -o tmp/core/formats/tiff.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o
~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(288/505) [CC] tmp/cmd/tsfvalidate.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfvalidate.cpp:15:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfvalidate.cpp:15:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(289/505) [CC] tmp/core/formats/tiff.o
(290/505) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o
(291/505) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o
(292/505) [CC] tmp/src/gui/mrview/icons.o
(293/505) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o
(294/505) [CC] tmp/cmd/tckedit.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGENg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/key_value.cpp -o tmp/core/file/key_value.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o
_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckedit.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tckedit.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(295/505) [CC] tmp/core/image_io/sparse.o
(296/505) [CC] tmp/core/file/key_value.o
(297/505) [CC] tmp/src/dwi/tractography/seeding/seeding.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/roi.h:19,
                 from src/dwi/tractography/properties.h:21,
                 from src/dwi/tractography/seeding/seeding.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/roi.h:19,
                 from src/dwi/tractography/properties.h:21,
                 from src/dwi/tractography/seeding/seeding.cpp:16:
/usr/include/c++/8/bits/stl_vectg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o
or.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(298/505) [CC] tmp/cmd/transformcompose.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformcompose.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformcompose.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformcompose.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with Valg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o
ueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(299/505) [CC] tmp/cmd/tck2fixel.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tck2fixel.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tck2fixel.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(300/505) [CC] tmp/src/dwi/tractography/seeding/dynamic.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o:

In file included from /usr/include/c++/8/vector:69,
                 from /usr/ing++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o
moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stride.cpp -o tmp/core/stride.o
clude/c++/8/queue:61,
                 from src/dwi/tractography/seeding/dynamic.h:20,
                 from src/dwi/tractography/seeding/dynamic.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::DWI::Tractography::Seeding::Fixel_TD_seed}; _Tp = MR::DWI::Tractography::Seeding::Fixel_TD_seed; _Alloc = std::allocator<MR::DWI::Tractography::Seeding::Fixel_TD_seed>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::DWI::Tractography::Seeding::Fixel_TD_seed, std::allocator<MR::DWI::Tractography::Seeding::Fixel_TD_seed> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::Seeding::Fixel_TD_seed*, std::vector<MR::DWI::Tractography::Seeding::Fixel_TD_seed, std::allocator<MR::DWI::Tractography::Seeding::Fixel_TD_seed> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'bool MR::DWI::Fixel_map<Fixel>::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::Seeding::Fixel_TD_seed*, std::vector<MR::DWI::Tractography::Seeding::Fixel_TD_seed, std::allocator<MR::DWI::Tractography::Seeding::Fixel_TD_seed> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In constructor 'MR::DWI::Fixel_map<Fixel>::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::DWI::Tractography::Seeding::Fixel_TD_seed*, std::vector<MR::DWI::Tractography::Seeding::Fixel_TD_seed, std::allocator<MR::DWI::Tractography::Seeding::Fixel_TD_seed> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(301/505) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o
(302/505) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp
(303/505) [CC] tmp/core/stride.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/stride.cpp -o tmp/core/stride.o:

In file included from /usr/include/c++/8/vector:69,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/stride.h:19,
                 from core/stride.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from core/types.h:22,
                 from core/mrtrix.h:36,
                 from core/cmdline_option.h:27,
                 from core/app.h:27,
                 from core/stride.h:19,
                 from core/stride.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function '(static initializers for core/stride.cpp)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/colourmap.cpp -o tmp/src/gui/mrview/colourmap.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/mgh.cpp -o tmp/core/file/mgh.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o
ote: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(304/505) [CC] tmp/core/formats/nifti1_gz.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/file/utils.h:25,
                 from core/formats/nifti1_gz.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI1_GZ::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI1_GZ::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(305/505) [CC] tmp/src/gui/mrview/colourmap.o
(306/505) [CC] tmp/core/file/mgh.o
(307/505) [CC] tmp/src/gui/lighting_dock.o
(308/505) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o
(309/505) [CC] tmp/cmd/dwi2fod.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2fod.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o
tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2fod.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2fod.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(310/505) [CC] tmp/cmd/tsfinfo.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfinfo.cpp:16:
/usr/include/c++/8/bits/g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o
vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tsfinfo.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(311/505) [CC] tmp/src/dwi/tractography/resampling/arc.o
(312/505) [CC] tmp/src/gui/mrview/tool/connectome/selection.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o:

In file included from /usr/include/c++/8/bits/stl_algo.h:61,
                 from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from src/registration/transform/initialiser_helpers.cpp:16:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >; _Distance = int; _Tp = std::pair<double, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::pair<double, int> > >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from src/registration/transform/initialiser_helpers.cpp:16:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::pair<double, int> > >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/transform/initialiser_helpers.h:21,
                 from src/registration/transform/initialiser_helpers.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, int&}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from src/registration/transform/initialiser_helpers.cpp:16:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::greater<std::pair<double, int> > >]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/transform/initialiser_helpers.h:21,
                 from src/registration/transform/initialiser_helpers.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Transform<double, 3, 18, 0>&}; _Tp = Eigen::Transform<double, 3, 18>; _Alloc = Eigen::aligned_allocator<Eigen::Transform<double, 3, 18> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Transform<double, 3, 18>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 18> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 18>*, std::vector<Eigen::Transform<double, 3, 18>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 18> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Transform<double, 3, 32, 0>&}; _Tp = Eigen::Transform<double, 3, 32>; _Alloc = Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 32>*, std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/transform/initialiser_helpers.h:21,
                 from src/registration/transform/initialiser_helpers.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Eigen::Transform<double, 3, 32>; _Alloc = Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> >]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 32>*, std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/transform/initialiser_helpers.h:21,
                 from src/registration/transform/initialiser_helpers.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In function 'bool MR::Registration::Transform::Init::get_sorted_eigen_vecs_vals(const Eigen::Matrix<double, 3, 3>&, Eigen::Matrix<double, -1, -1>&, Eigen::Matrix<double, -1, 1>&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /usr/include/eigen3/Eigen/Core:288,
                 from /usr/include/eigen3/Eigen/Geometry:11,
                 from src/registration/transform/initialiser_helpers.cpp:16:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > > >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/transform/initialiser_helpers.h:21,
                 from src/registration/transform/initialiser_helpers.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::Registration::RotationSearch::ExhaustiveRotationSearch<MetricType>::run(bool) [with MetricType = MR::Registration::Metric::MeanSquaredNoGradient]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 18>*, std::vector<Eigen::Transform<double, 3, 18>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 18> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 32>*, std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 32>*, std::vector<Eigen::Transform<double, 3, 32>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 32> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/transform/initialiser_helpers.h:21,
                 from src/registration/transform/initialiser_helpers.cpp:19:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forwarg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/thread.cpp -o tmp/core/thread.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/nifti_utils.cpp -o tmp/core/file/nifti_utils.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o
d<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from ./core/image.h:24,
                 from src/registration/transform/initialiser_helpers.h:21,
                 from src/registration/transform/initialiser_helpers.cpp:19:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Transform<double, 3, 18>*, std::vector<Eigen::Transform<double, 3, 18>, Eigen::aligned_allocator<Eigen::Transform<double, 3, 18> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(313/505) [CC] tmp/cmd/tcksample.o
(314/505) [CC] tmp/core/formats/ram.o
(315/505) [CC] tmp/core/thread.o
(316/505) [CC] tmp/core/file/nifti_utils.o
(317/505) [CC] tmp/src/gui/dialog/file.o
(318/505) [CC] tmp/cmd/mrcat.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksample.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tcksample.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(319/505) [CC] tmp/cmd/voxel2mesh.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/builg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o
d/mrtrix3-6j8ItB/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcat.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrcat.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(320/505) [CC] tmp/src/gui/mrview/tool/fixel/directory.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/voxel2mesh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changmoc src/gui/gui.h -o tmp/src/gui/gui_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/gui_moc.cpp -o tmp/src/gui/gui_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o
ed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/voxel2mesh.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/voxel2mesh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/voxel2mesh.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::Surface::Algo::image2mesh_mc(const ImageType&, MR::Surface::Mesh&, MR::default_type) [with ImageType = MR::Image<float>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::Surface::Algo::image2mesh_blocky(const ImageType&, MR::Surface::Mesh&) [with ImageType = MR::Image<bool>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(321/505) [MOC] tmp/src/gui/gui_moc.cpp
(322/505) [CC] tmp/src/gui/gui_moc.o
(323/505) [CC] tmp/cmd/warp2metric.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmdg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/pipe.cpp -o tmp/core/formats/pipe.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o
 -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/header.h:22,
                 from src/gui/mrview/tool/fixel/base_fixel.h:21,
                 from src/gui/mrview/tool/fixel/directory.h:19,
                 from src/gui/mrview/tool/fixel/directory.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual void MR::GUI::MRView::Tool::Directory::load_image_buffer()':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(324/505) [CC] tmp/core/formats/pipe.o
(325/505) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o
(326/505) [CC] tmp/src/surface/filter/base.o
(327/505) [CC] tmp/cmd/mredit.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warp2metric.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/warp2metric.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o
Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(328/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mredit.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mredit.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x)g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o
;
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(329/505) [CC] tmp/cmd/afdconnectivity.o
(330/505) [CC] tmp/core/formats/mrtrix_utils.o
(331/505) [CC] tmp/cmd/transformconvert.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformconvert.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformconvert.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/transformconvert.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrpad.cpp -o tmp/cmd/mrpad.o
cc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(332/505) [CC] tmp/cmd/mrpad.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/afdconnectivity.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/afdconnectivity.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/afdconnectivity.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator<Fixel>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Fixel, std::allocator<Fixel> >::iterator' {aka '__gnu_cxx::__normal_iterator<Fixel*, std::vector<Fixel, std::allocator<Fixel> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'bool MR::DWIg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o
::Fixel_map<Fixel>::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Fixel*, std::vector<Fixel, std::allocator<Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In constructor 'MR::DWI::Fixel_map<Fixel>::Fixel_map(const MR::Header&) [with Fixel = Fixel]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Fixel*, std::vector<Fixel, std::allocator<Fixel> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(333/505) [CC] tmp/cmd/shview.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include cmd/shview.cpp -o tmp/cmd/shview.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/gui/gui.h:19,
                 from cmd/shview.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/gui/gui.h:19,
                 from cmd/shview.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(334/505) [CC] tmp/src/stats/cfe.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrpad.cpp -o tmp/cmd/mrpad.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrpad.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::Apg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o
p::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrpad.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(335/505) [CC] tmp/cmd/mrinfo.o
(336/505) [CC] tmp/src/gui/mrview/mode/ortho.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrinfo.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrinfo.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
                 from cmd/mrinfo.cpp:16:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >'} changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
                 from cmd/mrinfo.cpp:16:
/usr/include/c++/8/bits/stl_map.h: In member function 'nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](const typename nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::object_t::key_type&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrinfo.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator' {aka '__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
In file included from cmd/mrinfo.cpp:23:
./core/file/json.h: In function 'nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayTg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o
ype, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]':
./core/file/json.h:2448:5: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1
     basic_json(std::initializer_list<basic_json> init,
     ^~~~~~~~~~
cmd/mrinfo.cpp: In function 'void keyval2json(const MR::Header&, JSON&) [with JSON = nlohmann::basic_json<>]':
cmd/mrinfo.cpp:208:26: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1
           json[kv.first] = { data };
           ~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrinfo.cpp:19:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
cmd/mrinfo.cpp:220:26: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1
           json[kv.first] = { json[kv.first], kv.second };
           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cmd/mrinfo.cpp: In function 'void header2json(const MR::Header&, nlohmann::json&)':
cmd/mrinfo.cpp:249:60: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1
                         {    0.0,    0.0,    0.0,    1.0 } };
                                                            ^
cmd/mrinfo.cpp:249:60: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1
cmd/mrinfo.cpp:249:60: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1
cmd/mrinfo.cpp:249:60: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1
cmd/mrinfo.cpp:249:60: note: parameter passing for argument of type 'std::initializer_list<nlohmann::basic_json<> >' changed in GCC 7.1


(337/505) [CC] tmp/cmd/tensor2metric.o
(338/505) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o
(339/505) [CC] tmp/cmd/label2mesh.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tensor2metric.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o
passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/tensor2metric.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(340/505) [CC] tmp/src/dwi/tractography/GT/internalenergy.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/label2mesh.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/label2mesh.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/label2mesh.cpp:18:
/usr/includemoc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o
moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o
/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/label2mesh.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::Surface::Algo::image2mesh_blocky(const ImageType&, MR::Surface::Mesh&) [with ImageType = MR::Image<bool>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void MR::Surface::Algo::image2mesh_mc(const ImageType&, MR::Surface::Mesh&, MR::default_type) [with ImageType = MR::Image<bool>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1>, std::allocator<Eigen::Matrix<double, 3, 1> > > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(341/505) [MOC] tmp/src/gui/color_button_moc.cpp
(342/505) [CC] tmp/cmd/mraverageheader.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o:

src/dwi/tractography/GT/internalenergy.cpp: In member function 'MR::DWI::Tractography::GT::ParticleEnd MR::DWI::Tractography::GT::InternalEnergyComputer::pickNeighbour()':
src/dwi/tractography/GT/internalenergy.cpp:103:18: warning: 'pe' may be used uninitialized in this function [-Wmaybe-uninitialized]
           return pe;
                  ^~


(343/505) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp
(344/505) [CC] tmp/src/dwi/tractography/connectome/connectome.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o:

In file included from src/dwi/tractography/connectome/connectome.cpp:17:
src/dwi/tractography/connectome/metric.h: In member function 'void MR::DWI::Tractography::Connectome::Metric::set_scale_invnodevol(MR::Image<unsigned int>&, bool)':
src/dwi/tractography/connectome/metric.h:109:19: warning: comparison of integer expressions of different signedness: 'const node_t' {aka 'const unsigned int'} and 'Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index' {aka 'int'} [-Wsign-compare]
         if (index >= node_volumes.size())
             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from /ug++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o
sr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/connectome/connectome.h:20,
                 from src/dwi/tractography/connectome/connectome.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/connectome/connectome.h:20,
                 from src/dwi/tractography/connectome/connectome.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/connectome/connectome.h:20,
                 from src/dwi/tractography/connectome/connectome.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(345/505) [CC] tmp/cmd/fixel2sh.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mraverageheader.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Armoc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o
gs = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::Header}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mraverageheader.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mraverageheader.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In function 'void run()':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(346/505) [MOC] tmp/src/gui/lighting_dock_moc.cpp
(347/505) [CC] tmp/src/gui/lighting_dock_moc.o
(348/505) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o
(349/505) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
       g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o
          from ./core/command.h:24,
                 from cmd/fixel2sh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixel2sh.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(350/505) [CC] tmp/core/formats/nifti2.o
(351/505) [CC] tmp/src/gui/opengl/font.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/file/ofstream.h:23,
                 from core/formats/nifti2.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {MR::File::Entry}; _Tp = MR::File::Entry; _Alloc = std::allocator<MR::File::Entry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::File::Entry, std::allocator<MR::File::Entry> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI2::read(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'virtual std::unique_ptr<MR::ImageIO::Base> MR::Formats::NIfTI2::create(MR::Header&) const':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::File::Entry*, std::vector<MR::File::Entry, std::allocator<MR::File::Entry> > >' changed in GCC 7.1
    _M_realloc_inserg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwinormalise.cpp -o tmp/cmd/dwinormalise.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o
t(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(352/505) [CC] tmp/cmd/dwinormalise.o
(353/505) [CC] tmp/src/surface/polygon.o
(354/505) [CC] tmp/cmd/shbasis.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwinormalise.cpp -o tmp/cmd/dwinormalise.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwinormalise.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwinormalise.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(355/505) [CC] tmp/cmd/dwi2mask.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from cmd/shbasis.cpp:16:
/usr/include/c++/8/bits/vector.tg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/math/bessel.cpp -o tmp/core/math/bessel.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o
cc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from cmd/shbasis.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(356/505) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o
(357/505) [CC] tmp/core/math/bessel.o
(358/505) [CC] tmp/src/gui/mrview/tool/connectome/edge.o
(359/505) [CC] tmp/src/gui/mrview/tool/odf/preview.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2mask.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2mask.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argumeng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o
t of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(360/505) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o
(361/505) [CC] tmp/src/dwi/sdeconv/csd.o
(362/505) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o
(363/505) [CC] tmp/src/connectome/connectome.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/sdeconv/csd.h:19,
                 from src/dwi/sdeconv/csd.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/sdeconv/csd.h:19,
                 from src/dwi/sdeconv/csd.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(364/505) [CC] tmp/src/gui/dialog/opengl.o
(365/505) [CC] tmp/src/dwi/tractography/GT/mhsampler.o
(366/505) [CC] tmp/src/dwi/tractography/mapping/voxel.o
(367/505) [CC] tmp/cmd/dwi2tensor.o
(368/505) [CC] tmp/cmd/fixelcfestats.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2tensor.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MRg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o
::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwi2tensor.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(369/505) [CC] tmp/core/file/dicom/image.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o:

cmd/fixelcfestats.cpp: In function 'void run()':
cmd/fixelcfestats.cpp:182:43: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'MR::Stats::CFE::index_type' {aka 'unsigned int'} [-Wsign-compare]
     for (mask.index(0) = 0; mask.index(0) != num_fixels; ++mask.index(0))
                             ~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelcfestats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o

                 from cmd/fixelcfestats.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fixelcfestats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(370/505) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o:

In file included from core/file/dicom/image.cpp:22:
./core/file/dicom/csa_entry.h: In instantiation of 'void MR::File::Dicom::CSAEntry::get_float(Container&) const [with Container = Eigen::Matrix<double, 3, 1>]':
core/file/dicom/image.cpp:352:31:   required from here
./core/file/dicom/csa_entry.h:119:28: warning: comparison of integer expressions of different signedness: 'const uint32_t' {aka 'const unsigned int'} and 'Eigen::EigenBase<Eigen::Matrix<double, 3, 1> >::Index' {aka 'int'} [-Wsign-compare]
                 if (nitems < v.size())
In file included from core/file/dicom/image.cpp:22:
./core/file/dicom/csa_entry.h:126:45: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'Eigen::EigenBase<Eigen::Matrix<double, 3, 1> >::Index' {aka 'int'} [-Wsign-compare]
                 for (uint32_t m = nitems; m < v.size(); ++m)
In file included from core/file/dicom/image.cpp:22:
./core/file/dicom/csa_entry.h: In instantiation of 'void MR::File::Dicom::CSAEntry::get_float(Container&) const [with Container = Eigen::Matrix<double, 6, 1>]':
core/file/dicom/image.cpp:375:31:   required from here
./core/file/dicom/csa_entry.h:119:28: warning: comparison of integer expressions of different signedness: 'const uint32_t' {aka 'const unsigned int'} and 'Eigen::EigenBase<Eigen::Matrix<double, 6, 1> >::Index' {akg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o
a 'int'} [-Wsign-compare]
                 if (nitems < v.size())
In file included from core/file/dicom/image.cpp:22:
./core/file/dicom/csa_entry.h:126:45: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'Eigen::EigenBase<Eigen::Matrix<double, 6, 1> >::Index' {aka 'int'} [-Wsign-compare]
                 for (uint32_t m = nitems; m < v.size(); ++m)


(371/505) [CC] tmp/src/gui/mrview/mode/lightbox.o
(372/505) [CC] tmp/src/registration/transform/affine.o
(373/505) [CC] tmp/cmd/dwidenoise.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwidenoise.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dwidenoise.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(374/505) [CC] tmp/src/gui/mrview/tool/view.o
(375/505) [CC] tmp/cmd/dirorder.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopeg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o
nmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirorder.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/dirorder.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(376/505) [CC] tmp/src/gui/mrview/mode/base.o
(377/505) [CC] tmp/src/dwi/tractography/resampling/resampling.o
(378/505) [CC] tmp/core/image_io/base.o
(379/505) [CC] tmp/cmd/fod2fixel.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/resampling/resampling.h:20,
                 from src/dwi/tractography/resampling/resampling.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from src/dwi/tractography/resampling/resampling.h:20,
                 from src/dwi/tractography/resampling/resampling.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o
std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(380/505) [CC] tmp/cmd/amp2sh.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fod2fixel.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/fod2fixel.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(381/505) [CC] tmp/cmd/sh2peaks.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2peaks.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o
ert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/sh2peaks.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(382/505) [CC] tmp/src/stats/cluster.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/amp2sh.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/amp2sh.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, stg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o
moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o
moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o
d::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(383/505) [CC] tmp/src/gui/mrview/tool/view_moc.o
(384/505) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp
(385/505) [CC] tmp/src/gui/mrview/adjust_button_moc.o
(386/505) [CC] tmp/cmd/vectorstats.o
(387/505) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp
(388/505) [CC] tmp/src/gui/mrview/spin_box_moc.o
(389/505) [CC] tmp/cmd/connectome2tck.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/vectorstats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/vectorstats.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<Mg++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/image_io/gz.cpp -o tmp/core/image_io/gz.o
moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o
R::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/vectorstats.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~


(390/505) [CC] tmp/cmd/peaks2amp.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/peaks2amp.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/peaks2amp.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(391/505) [CC] tmp/core/image_io/gz.o
(392/505) [MOC] tmp/src/gui/mrview/window_moc.cpp
(393/505) [CC] tmp/src/gui/mrview/window_moc.o
(394/505) [CC] tmp/core/file/dicom/quick_scan.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o
g++ tmp/core/exception.o tmp/core/math/stats/glm.o tmp/core/file/dicom/select_cmdline.o tmp/core/file/json_utils.o tmp/core/stride.o tmp/core/file/mmap.o tmp/core/formats/pipe.o tmp/core/formats/mrtrix_gz.o tmp/core/image_io/scratch.o tmp/core/math/stats/permutation.o tmp/core/formats/mri.o tmp/core/image_io/fetch_store.o tmp/core/file/dicom/mapper.o tmp/core/formats/nifti1_gz.o tmp/core/formats/mgh.o tmp/core/formats/mgz.o tmp/core/math/average_space.o tmp/core/version.o tmp/core/file/dicom/patient.o tmp/core/file/mgh.o tmp/core/file/dicom/element.o tmp/core/formats/mrtrix_utils.o tmp/core/formats/nifti1.o tmp/core/formats/xds.o tmp/core/algo/histogram.o tmp/core/file/dicom/tree.o tmp/core/file/nifti2_utils.o tmp/core/formats/mrtrix.o tmp/core/axes.o tmp/core/signal_handler.o tmp/core/formats/ram.o tmp/core/math/bessel.o tmp/core/file/tiff.o tmp/core/datatype.o tmp/core/header.o tmp/core/file/dicom/dict.o tmp/core/image_io/mosaic.o tmp/core/adapter/reslice.o tmp/core/file/nifti1_utils.o tmp/core/image_io/sparse.o tmp/core/phase_encoding.o tmp/core/mrtrix.o tmp/core/image_io/base.o tmp/core/file/name_parser.o tmp/core/formats/nifti2_gz.o tmp/core/file/dicom/study.o tmp/core/file/key_value.o tmp/core/formats/nifti2.o tmp/core/app.o tmp/core/file/config.o tmp/core/thread.o tmp/core/image_io/pipe.o tmp/core/formats/dicom.o tmp/core/file/nifti_utils.o tmp/core/progressbar.o tmp/core/image_io/tiff.o tmp/core/image_io/gz.o tmp/core/bitset.o tmp/core/stats.o tmp/core/math/SH.o tmp/core/file/dicom/quick_scan.o tmp/core/formats/analyse.o tmp/core/image_io/default.o tmp/core/file/ofstream.o tmp/core/formats/tiff.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/file/dicom/series.o tmp/core/formats/list.o tmp/core/file/dicom/image.o tmp/core/image_io/ram.o -shared -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -o lib/libmrtrix.so
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o
g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 -pipe -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /usr/share/qt4/mkspecs/linux-g++ -isystem /usr/include/qt4/QtCore -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtSvg -isystem /usr/include/qt4 -isystem /usr/X11R6/include tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o
g++ tmp/src/dwi/directions/file.o tmp/cmd/dirorder.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder
g++ tmp/src/exec_version.o tmp/cmd/transformcompose.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose
g++ tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen
g++ tmp/cmd/peaks2amp.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp
g++ tmp/src/connectome/lut.o tmp/cmd/meshconvert.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert
g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity
g++ tmp/cmd/mrstats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats
g++ tmp/cmd/warpconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert
g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power
g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch
g++ tmp/cmd/mrthreshold.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold
g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec
g++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrpad
g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis
g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric
g++ tmp/src/exec_version.o tmp/cmd/fixel2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold
g++ tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/cmd/labelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckinfo.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo
g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwi2adc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc
g++ tmp/cmd/mrcat.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat
d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/connectome2tck.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/connectome2tck.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


(395/505) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o
(396/505) [LD] lib/libmrtrix.so
(397/505) [CC] tmp/src/gui/opengl/gl_core_3_3.o
(398/505) [CC] tmp/src/gui/color_button_moc.o
(400/505) [LB] bin/dirorder
(399/505) [LB] bin/transformcompose
(401/505) [LB] bin/dirgen
(402/505) [LB] bin/peaks2amp
(403/505) [LB] bin/meshconvert
(404/505) [LB] bin/mrdump
(405/505) [LB] bin/tck2fixel
(406/505) [LB] bin/afdconnectivity
(407/505) [LB] bin/mrstats
(408/505) [LB] bin/warpconvert
(409/505) [LB] bin/sh2power
(410/505) [LB] bin/mrhistmatch
(411/505) [LB] bin/mrthreshold
(412/505) [LB] bin/fod2dec
(413/505) [LB] bin/mrpad
(414/505) [LB] bin/shbasis
(415/505) [LB] bin/warp2metric
(416/505) [LB] bin/fixel2sh
(417/505) [LB] bin/tsfthreshold
(418/505) [LB] bin/labelconvert
(419/505) [LB] bin/tckinfo
(420/505) [LB] bin/dwi2adc
(421/505) [LB] bin/mrcat
(422/505) [LB] bin/tckconvg++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tckconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel
g++ tmp/cmd/transformcalc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc
g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter
g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert
g++ tmp/cmd/mrcalc.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc
g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/smooth.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/cmd/meshfilter.o tmp/src/surface/mesh_multi.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck
g++ tmp/src/dwi/tractography/roi.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis
g++ tmp/cmd/mrfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/endpoints.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample
g++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf
g++ tmp/src/dwi/directions/file.o tmp/cmd/dirmerge.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfdivide.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide
g++ tmp/src/stats/permtest.o tmp/cmd/vectorstats.o tmp/src/stats/permstack.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats
g++ tmp/cmd/dirstat.o tmp/src/dwi/directions/file.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat
g++ tmp/src/exec_version.o tmp/cmd/voxel2fixel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel
g++ tmp/cmd/mredit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tsfsmooth.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc
g++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2fixel.o tmp/src/exec_version.o tmp/src/dwi/directions/mask.o tmp/src/dwi/directions/set.o tmp/src/dwi/fmls.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel
g++ tmp/src/dwi/gradient.o tmp/cmd/mrconvert.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert
g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirflip.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats
g++ tmp/src/gui/opengl/shader.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dwi/renderer.o tmp/src/gui/dialog/list.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/shview/render_window.o tmp/src/gui/shview/icons.o tmp/src/dwi/directions/set.o tmp/src/gui/opengl/lighting.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dialog/dicom.o tmp/src/gui/color_button.o tmp/src/gui/dialog/dialog.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/opengl/gl.o tmp/src/gui/gui_moc.o tmp/src/dwi/directions/predefined.o tmp/src/gui/dialog/progress.o tmp/src/gui/projection.o tmp/cmd/shview.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/opengl/font.o tmp/src/gui/gui.o tmp/src/gui/lighting_dock.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/dialog/file.o tmp/src/gui/color_button_moc.o tmp/src/gui/shview/render_window_moc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 -L/usr/lib/arm-linux-gnueabihf -L/usr/X11R6/lib -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/shview
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/stats/cfe.o tmp/src/stats/permtest.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/cmd/fixelcfestats.o tmp/src/stats/permstack.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats
g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit
g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/cmd/label2mesh.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh
g++ tmp/src/exec_version.o tmp/cmd/dcmedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit
g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect
g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/cmd/mrinfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo
g++ tmp/src/exec_version.o tmp/cmd/mrdegibbs.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/cmd/tsfvalidate.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate
g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/amp2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response
g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/cmd/mesh2voxel.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/vertex_transform.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/src/surface/filter/base.o tmp/src/connectome/connectome.o tmp/src/surface/mesh_multi.o tmp/src/surface/algo/mesh2image.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel
g++ tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/surface/polygon.o tmp/cmd/voxel2mesh.o tmp/src/connectome/connectome.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh
g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath
g++ tmp/cmd/fixelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert
g++ tmp/cmd/label2colour.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour
g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise
g++ tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwiextract.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/mapping/mapper.o tmp/cmd/tcksift.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift
g++ tmp/src/dwi/directions/file.o tmp/cmd/dirsplit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit
g++ tmp/src/dwi/gradient.o tmp/cmd/sh2response.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckglobal.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/exec_version.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/rng.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal
g++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop
g++ tmp/cmd/transformconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert
g++ tmp/cmd/mrhistogram.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult
g++ tmp/cmd/dwinormalise.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwinormalise
g++ tmp/cmd/mrresize.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrresize
g++ tmp/cmd/mrcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcrop
g++ tmp/src/registration/transform/initialiser_helpers.o tmp/src/exec_version.o tmp/src/registration/transform/initialiser.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader
g++ tmp/cmd/dwi2tensor.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor
g++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/cmd/tcksift2.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/SIFT/track_index_range.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2
g++ tmp/src/dwi/directions/predefined.o tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/dwi2fod.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/resampling/resampling.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap
g++ tmp/cmd/amp2sh.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo
g++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask
g++ tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/cmd/connectomestats.o tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/src/stats/permstack.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats
g++ tmp/cmd/tensor2metric.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck
g++ tmp/src/dwi/tractography/roi.o tmp/src/gui/dialog/progress.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/view.o tmp/src/dwi/tractography/properties.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/gui/projection.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/dwi/gradient.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/colourmap.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/lighting_dock.o tmp/src/surface/polygon.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/dwi/renderer.o tmp/src/gui/opengl/shader.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/combo_box_error.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/shapes/halfsphere.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/window.o tmp/src/connectome/lut.o tmp/src/dwi/shells.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/dialog/opengl.o tmp/src/gui/mrview/volume.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/dialog/dialog.o tmp/src/gui/gui_moc.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/cursor.o tmp/src/gui/mrview/mode/base.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/gui.o tmp/src/dwi/tractography/rng.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/gui/mrview/mode/slice.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/base.o tmp/src/gui/opengl/gl.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/surface/freesurfer.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/adjust_button.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/mrview/mode/ortho.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/shapes/cube.o tmp/src/surface/mesh.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/exec_version.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/color_button.o tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/overlay.o tmp/src/surface/scalar.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -Wl,-O1 -L/usr/lib/arm-linux-gnueabihf -L/usr/X11R6/lib -lQtSvg -lQtOpenGL -lQtGui -lQtCore -lGL -lpthread -o bin/mrview
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/seeding/list.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/connectome/matrix.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi
g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv
g++ tmp/cmd/sh2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks
g++ tmp/cmd/sh2amp.o tmp/src/dwi/gradient.o tmp/src/dwi/shells.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp
g++ tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/cmd/dwi2mask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask
g++ tmp/cmd/dcminfo.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tcktransform.o tmp/src/dwi/tractography/properties.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform
g++ tmp/src/exec_version.o tmp/cmd/warpinit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/cmd/tcksample.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample
g++ tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/cmd/tckedit.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/editing/receiver.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit
g++ tmp/src/registration/transform/rigid.o tmp/src/registration/transform/convergence_check.o tmp/src/exec_version.o tmp/cmd/mrmetric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric
g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen
g++ tmp/src/stats/tfce.o tmp/src/stats/permtest.o tmp/src/stats/permstack.o tmp/src/stats/cluster.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o tmp/cmd/mrclusterstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats
g++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient

ERROR: (501/505) [LB] bin/tckgen

g++ tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/shells.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/gradient.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/tracking/tractography.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/rng.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -lz -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen

failed with output

/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `MR::DWI::Tractography::Seeding::Dynamic::get_seed(Eigen::Matrix<float, 3, 1, 0, 3, 1>&, Eigen::Matrix<float, 3, 1, 0, 3, 1>&)':
/usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: /usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `MR::DWI::Tractography::Seeding::Dynamic::get_seed(Eigen::Matrix<float, 3, 1, 0, 3, 1>&, Eigen::Matrix<float, 3, 1, 0, 3, 1>&)':
/usr/include/c++/8/bits/atomic_base.h:514: undefined reference to `__atomic_fetch_add_8'
/usr/bin/ld: /usr/include/c++/8/bits/atomic_base.h:514: undefined reference to `__atomic_fetch_add_8'
/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > MR::str<std::atomic<unsigned long long> >(std::atomic<unsigned long long> const&, int)':
/usr/include/c++/8/bits/atomic_base.h:396: undefined reference to `__atomic_load_8'
/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `void std::vector<MR::DWI::Tractography::Seeding::Fixel_TD_seed, std::allocator<MR::DWI::Tractography::Seeding::Fixel_TD_seed> >::_M_realloc_insert<MR::DWI::Tractography::Seeding::Fixel_TD_seed>(__gnu_cxx::__normal_iterator<MR::DWI::Tractography::Seeding::Fixel_TD_seed*, std::vector<MR::DWI::Tractography::Seeding::Fixel_TD_seed, std::allocator<MR::DWI::Tractography::Seeding::Fixel_TD_seed> > >, MR::DWI::Tractography::Seeding::Fixel_TD_seed&&)':
/usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: /usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: /usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `MR::DWI::Tractography::SIFT::ModelBase<MR::DWI::Tractography::Seeding::Fixel_TD_seed>::operator()(MR::DWI::Tractography::Mapping::SetDixel const&)':
/usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: /usr/include/c++/8/atomic:288: undefined reference to `__atomic_compare_exchange_8'
/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `MR::DWI::Tractography::Mapping::Fixel_TD_map<MR::DWI::Tractography::Seeding::Fixel_TD_seed>::operator()(MR::DWI::Tractography::Mapping::SetDixel const&)':
/usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: /usr/include/c++/8/atomic:288: undefined reference to `__atomic_compare_exchange_8'
/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `MR::DWI::Fixel_map<MR::DWI::Tractography::Seeding::Fixel_TD_seed>::operator()(MR::DWI::FMLS::FOD_lobes const&)':
/usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
/usr/bin/ld: tmp/src/dwi/tractography/seeding/dynamic.o: in function `MR::DWI::Fixel_map<MR::DWI::Tractography::Seeding::Fixel_TD_seed>::Fixel_map(MR::Header const&)':
/usr/include/c++/8/atomic:250: undefined reference to `__atomic_load_8'
collect2: error: ld returned 1 exit status
ert
(423/505) [LB] bin/fixel2voxel
(424/505) [LB] bin/transformcalc
(425/505) [LB] bin/maskfilter
(426/505) [LB] bin/warpinvert
(427/505) [LB] bin/mrcalc
(428/505) [LB] bin/meshfilter
(429/505) [LB] bin/5ttcheck
(430/505) [LB] bin/5tt2vis
(431/505) [LB] bin/mrfilter
(432/505) [LB] bin/tckresample
(433/505) [LB] bin/maskdump
(434/505) [LB] bin/fixel2tsf
(435/505) [LB] bin/dirmerge
(436/505) [LB] bin/tsfdivide
(437/505) [LB] bin/vectorstats
(438/505) [LB] bin/dirstat
(439/505) [LB] bin/voxel2fixel
(440/505) [LB] bin/mredit
(441/505) [LB] bin/tsfsmooth
(442/505) [LB] bin/tckdfc
(443/505) [LB] bin/fod2fixel
(444/505) [LB] bin/mrconvert
(445/505) [LB] bin/dirflip
(446/505) [LB] bin/tckstats
(447/505) [LB] bin/shview
(448/505) [LB] bin/fixelcfestats
(449/505) [LB] bin/fixelcorrespondence
(450/505) [LB] bin/5ttedit
(451/505) [LB] bin/label2mesh
(452/505) [LB] bin/dcmedit
(453/505) [LB] bin/warpcorrect
(454/505) [LB] bin/mrinfo
(455/505) [LB] bin/mrdegibbs
(456/505) [LB] bin/tsfvalidate
(457/505) [LB] bin/amp2response
(458/505) [LB] bin/mesh2voxel
(459/505) [LB] bin/voxel2mesh
(460/505) [LB] bin/mrmath
(461/505) [LB] bin/fixelconvert
(462/505) [LB] bin/label2colour
(463/505) [LB] bin/mtnormalise
(464/505) [LB] bin/dwiextract
(465/505) [LB] bin/tcksift
(466/505) [LB] bin/dirsplit
(467/505) [LB] bin/sh2response
(468/505) [LB] bin/tckglobal
(469/505) [LB] bin/fixelcrop
(470/505) [LB] bin/transformconvert
(471/505) [LB] bin/mrhistogram
(472/505) [LB] bin/tsfmult
(473/505) [LB] bin/dwinormalise
(474/505) [LB] bin/mrresize
(475/505) [LB] bin/mrcrop
(476/505) [LB] bin/mraverageheader
(477/505) [LB] bin/dwi2tensor
(478/505) [LB] bin/dwidenoise
(479/505) [LB] bin/tcksift2
(480/505) [LB] bin/dwi2fod
(481/505) [LB] bin/tckmap
(482/505) [LB] bin/amp2sh
(483/505) [LB] bin/tsfinfo
(484/505) [LB] bin/mrcheckerboardmask
(485/505) [LB] bin/connectomestats
(486/505) [LB] bin/tensor2metric
(487/505) [LB] bin/connectome2tck
(488/505) [LB] bin/mrview
(489/505) [LB] bin/tck2connectome
(490/505) [LB] bin/5tt2gmwmi
(491/505) [LB] bin/shconv
(492/505) [LB] bin/sh2peaks
(493/505) [LB] bin/sh2amp
(494/505) [LB] bin/dwi2mask
(495/505) [LB] bin/dcminfo
(496/505) [LB] bin/tcktransform
(497/505) [LB] bin/warpinit
(498/505) [LB] bin/tcksample
(499/505) [LB] bin/tckedit
(500/505) [LB] bin/mrmetric
(501/505) [LB] bin/tckgen
(502/505) [LB] bin/mrclusterstats
(503/505) [LB] bin/fixelreorient

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o:

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrtransform.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrtransform.cpp:16:
/usr/include/c++/8/bits/stl_v
ERROR: (272/505) [CC] tmp/cmd/mrregister.o

g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /usr/include/eigen3 cmd/mrregister.cpp -o tmp/cmd/mrregister.o

failed with output

In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrregister.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::App::Argument&}; _Tp = MR::App::Argument; _Alloc = std::allocator<MR::App::Argument>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::App::Argument, std::allocator<MR::App::Argument> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrregister.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
virtual memory exhausted: Cannot allocate memory
ector.h: In member function 'MR::App::OptionList& MR::App::OptionList::operator+(const MR::App::Argument&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void usage()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::App::Argument*, std::vector<MR::App::Argument, std::allocator<MR::App::Argument> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrtransform.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'MR::vector<MR::vector<T> > MR::load_matrix_2D_vector(const string&) [with ValueType = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MR::Header&}; _Tp = MR::Header; _Alloc = Eigen::aligned_allocator<MR::Header>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> >::iterator' {aka '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from ./core/types.h:22,
                 from ./core/mrtrix.h:36,
                 from ./core/cmdline_option.h:27,
                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrtransform.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void run()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


make[1]: *** [debian/rules:39: override_dh_auto_build] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2'
make: *** [debian/rules:33: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2019-03-04T06:30:23Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 151935
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 4323
Job: mrtrix3_3.0~rc3+git135-g2b8e7d0c2-3
Machine Architecture: armhf
Package: mrtrix3
Package-Time: 156329
Source-Version: 3.0~rc3+git135-g2b8e7d0c2-3
Space: 0
Status: failed
Version: 3.0~rc3+git135-g2b8e7d0c2-3
--------------------------------------------------------------------------------
Finished at 2019-03-04T06:30:23Z
Build needed 00:00:00, 0k disc space