Raspbian Package Auto-Building

minimap2 → 2.24+dfsg-3 → armhf → 2022-12-03 07:05:07

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| minimap2 2.24+dfsg-3 (armhf)                 Sat, 03 Dec 2022 06:25:12 +0000 |
+==============================================================================+

Package: minimap2
Version: 2.24+dfsg-3
Source Version: 2.24+dfsg-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-ac44aae7-d123-42e3-bf8f-3215495c27d3' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/minimap2-LJbsGO/resolver-tkg5J6' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.7 MB in 11s (2442 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'minimap2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/minimap2.git
Please use:
git clone https://salsa.debian.org/med-team/minimap2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 209 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main minimap2 2.24+dfsg-3 (dsc) [2316 B]
Get:2 http://172.17.4.1/private bookworm-staging/main minimap2 2.24+dfsg-3 (tar) [195 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main minimap2 2.24+dfsg-3 (diff) [11.2 kB]
Fetched 209 kB in 0s (1752 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/minimap2-LJbsGO/minimap2-2.24+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/minimap2-LJbsGO' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), python3-setuptools, dh-python, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot, libsimde-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), python3-setuptools, dh-python, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot, libsimde-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [458 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [537 B]
Fetched 1952 B in 0s (36.7 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap libperl5.34 perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  adwaita-icon-theme aglfn at-spi2-common autoconf automake autopoint
  autotools-dev bsdextrautils bsdutils cpp-12 cython3 d-shlibs dbus dbus-bin
  dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session
  dconf-gsettings-backend dconf-service debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dmsetup dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-gfs-baskerville fonts-gfs-porson fonts-lmodern
  fonts-urw-base35 g++-12 gcc-12 gcc-12-base gettext gettext-base ghostscript
  gnuplot gnuplot-data gnuplot-qt groff-base gtk-update-icon-cache
  hicolor-icon-theme intltool-debian libabsl20210324 libaom3
  libapache-pom-java libapparmor1 libarchive-zip-perl libargon2-1 libasan8
  libatk-bridge2.0-0 libatk1.0-0 libatomic1 libatspi2.0-0 libavahi-client3
  libavahi-common-data libavahi-common3 libavif15 libblkid1 libbrotli1 libbsd0
  libcairo-gobject2 libcairo2 libcc1-0 libcolord2 libcommons-logging-java
  libcommons-parent-java libcryptsetup12 libcups2 libdatrie1 libdav1d6
  libdbus-1-3 libdconf1 libde265-0 libdebhelper-perl libdeflate0
  libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common
  libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1
  libepoxy0 libevdev2 libexpat1 libexpat1-dev libfdisk1
  libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1
  libfreetype6 libfribidi0 libgav1-1 libgbm1 libgcc-12-dev libgcc-s1 libgd3
  libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri
  libglapi-mesa libgles2 libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1
  libgraphite2-3 libgs-common libgs10 libgs10-common libgtk-3-0
  libgtk-3-common libgudev-1.0-0 libharfbuzz0b libheif1 libice6 libicu72
  libidn12 libijs-0.35 libinput-bin libinput10 libip4tc2 libjbig0 libjbig2dec0
  libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c5
  libkmod2 libkpathsea6 liblcms2-2 liblerc4 libllvm14 liblua5.4-0 libmagic-mgc
  libmagic1 libmd0 libmd4c0 libmount1 libmpdec3 libmtdev1 libnotify4
  libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
  libpcre2-8-0 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16
  libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
  libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5
  libqt5svg5 libqt5widgets5 librav1e0 libsensors-config libsensors5
  libsimde-dev libsm6 libsmartcols1 libstdc++-12-dev libstdc++6
  libsub-override-perl libsvtav1enc1 libsynctex2 libsystemd-shared libsystemd0
  libteckit0 libtexlua53-5 libtexluajit2 libthai-data libthai0 libtiff5
  libtool libubsan1 libuchardet0 libudev1 libuuid1 libwacom-common libwacom9
  libwayland-client0 libwayland-egl1 libwayland-server0 libwebp7
  libwxbase3.2-0 libwxgtk3.2-0 libx11-6 libx11-data libx11-xcb1 libx265-199
  libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4
  libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
  libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
  libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
  libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3
  libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxmu6 libxpm4
  libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyuv0
  libz3-4 libzzip-0-13 m4 man-db media-types mount po-debconf poppler-data
  preview-latex-style python3 python3-all python3-all-dev python3-dev
  python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
  python3-setuptools python3.10 python3.10-dev python3.10-minimal
  shared-mime-info systemd systemd-sysv t1utils tex-common texlive-base
  texlive-binaries texlive-font-utils texlive-fonts-recommended
  texlive-lang-greek texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures texlive-science ucf util-linux
  util-linux-extra x11-common xdg-utils xfonts-encodings xfonts-utils xkb-data
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-12-locales cpp-12-doc
  cython-doc dh-make flit python3-build python3-tomli python3-installer
  fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gcc-12-doc gettext-doc
  libasprintf-dev libgettextpo-dev ghostscript-x gnuplot-doc groff colord
  libavalon-framework-java libcommons-logging-java-doc
  libexcalibur-logkit-java liblog4j1.2-java cups-common libgd-tools
  low-memory-monitor gvfs liblcms2-utils cryptsetup-bin notification-daemon
  qt5-image-formats-plugins qtwayland5 lm-sensors libstdc++-12-doc libtool-doc
  gfortran | fortran95-compiler gcj-jdk libwacom-bin m4-doc apparmor less
  www-browser nfs-common libmail-box-perl poppler-utils fonts-japanese-mincho
  | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic
  fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk
  python3-venv python-setuptools-doc python3.10-venv python3.10-doc
  binfmt-support systemd-container systemd-homed systemd-userdbd systemd-boot
  systemd-resolved libfido2-1 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0
  policykit-1 perl-tk xpdf | pdf-viewer xzdec lcdf-typetools psutils
  texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments
  icc-profiles libfile-which-perl texlive-latex-extra-doc
  texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex
  texlive-pictures-doc vprerex texlive-science-doc dosfstools kbd
  util-linux-locales
Recommended packages:
  librsvg2-common curl | wget | lynx at-spi2-core libarchive-cpio-perl
  libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs fonts-droid-fallback
  libgtk-3-bin javascript-common qttranslations5-l10n qt5-gtk-platformtheme
  libltdl-dev uuid-runtime libmail-sendmail-perl systemd-timesyncd
  | time-daemon libnss-systemd lmodern dvisvgm ps2eps tex-gyre tipa
  default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  adwaita-icon-theme aglfn at-spi2-common autoconf automake autopoint
  autotools-dev bsdextrautils cython3 d-shlibs dbus dbus-bin dbus-daemon
  dbus-session-bus-common dbus-system-bus-common dbus-user-session
  dconf-gsettings-backend dconf-service debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dmsetup dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-gfs-baskerville fonts-gfs-porson fonts-lmodern
  fonts-urw-base35 gettext gettext-base ghostscript gnuplot gnuplot-data
  gnuplot-qt groff-base gtk-update-icon-cache hicolor-icon-theme
  intltool-debian libabsl20210324 libaom3 libapache-pom-java libapparmor1
  libarchive-zip-perl libargon2-1 libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0
  libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libbrotli1
  libbsd0 libcairo-gobject2 libcairo2 libcolord2 libcommons-logging-java
  libcommons-parent-java libcryptsetup12 libcups2 libdatrie1 libdav1d6
  libdbus-1-3 libdconf1 libde265-0 libdebhelper-perl libdeflate0
  libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common
  libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1
  libepoxy0 libevdev2 libexpat1 libexpat1-dev libfdisk1
  libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1
  libfreetype6 libfribidi0 libgav1-1 libgbm1 libgd3 libgdk-pixbuf-2.0-0
  libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglapi-mesa libgles2
  libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgs-common
  libgs10 libgs10-common libgtk-3-0 libgtk-3-common libgudev-1.0-0
  libharfbuzz0b libheif1 libice6 libicu72 libidn12 libijs-0.35 libinput-bin
  libinput10 libip4tc2 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery
  libjs-sphinxdoc libjs-underscore libjson-c5 libkmod2 libkpathsea6 liblcms2-2
  liblerc4 libllvm14 liblua5.4-0 libmagic-mgc libmagic1 libmd0 libmd4c0
  libmpdec3 libmtdev1 libnotify4 libopenjp2-7 libpam-systemd libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
  libpcre2-32-0 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16
  libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib
  libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5
  libqt5svg5 libqt5widgets5 librav1e0 libsensors-config libsensors5
  libsimde-dev libsm6 libsub-override-perl libsvtav1enc1 libsynctex2
  libsystemd-shared libteckit0 libtexlua53-5 libtexluajit2 libthai-data
  libthai0 libtiff5 libtool libuchardet0 libwacom-common libwacom9
  libwayland-client0 libwayland-egl1 libwayland-server0 libwebp7
  libwxbase3.2-0 libwxgtk3.2-0 libx11-6 libx11-data libx11-xcb1 libx265-199
  libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4
  libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
  libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
  libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
  libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3
  libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxmu6 libxpm4
  libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyuv0
  libz3-4 libzzip-0-13 m4 man-db media-types po-debconf poppler-data
  preview-latex-style python3 python3-all python3-all-dev python3-dev
  python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
  python3-setuptools python3.10 python3.10-dev python3.10-minimal
  sbuild-build-depends-main-dummy shared-mime-info systemd systemd-sysv
  t1utils tex-common texlive-base texlive-binaries texlive-font-utils
  texlive-fonts-recommended texlive-lang-greek texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures
  texlive-science ucf x11-common xdg-utils xfonts-encodings xfonts-utils
  xkb-data zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
  libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 libmount1 libpcre2-8-0
  libsmartcols1 libstdc++-12-dev libstdc++6 libsystemd0 libubsan1 libudev1
  libuuid1 mount util-linux util-linux-extra
24 upgraded, 283 newly installed, 0 to remove and 54 not upgraded.
Need to get 336 MB of archives.
After this operation, 975 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libargon2-1 armhf 0~20171227-0.3 [19.6 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libudev1 armhf 251.6-1+rpi1 [91.5 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf dmsetup armhf 2:1.02.185-2 [81.8 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.185-2 [123 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libjson-c5 armhf 0.16-2 [40.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libcryptsetup12 armhf 2:2.5.0-6 [181 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libfdisk1 armhf 2.38.1-4 [179 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libkmod2 armhf 30+20220905-1 [50.1 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libapparmor1 armhf 3.0.7-1 [98.9 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libip4tc2 armhf 1.8.8-1 [32.9 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libsystemd-shared armhf 251.6-1+rpi1 [1441 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libsystemd0 armhf 251.6-1+rpi1 [294 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf systemd armhf 251.6-1+rpi1 [2707 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf systemd-sysv armhf 251.6-1+rpi1 [39.7 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libdbus-1-3 armhf 1.14.4-1 [211 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf dbus-bin armhf 1.14.4-1 [137 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf dbus-session-bus-common all 1.14.4-1 [112 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dbus-daemon armhf 1.14.4-1 [204 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dbus-system-bus-common all 1.14.4-1 [113 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf dbus armhf 1.14.4-1 [129 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-2 [222 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf shared-mime-info armhf 2.2-1 [726 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libdouble-conversion3 armhf 3.2.1-1 [38.8 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-2 [208 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libqt5core5a armhf 5.15.6+dfsg-2+rpi1+b1 [1494 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfontenc1 armhf 1:1.1.4-1 [22.3 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf xfonts-encodings all 1:1.0.4-2.1 [573 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fonts-urw-base35 all 20200910-6 [6374 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libdrm-common all 2.4.114-1+rpi1 [7276 B]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libdrm2 armhf 2.4.114-1+rpi1 [32.8 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libglvnd0 armhf 1.5.0-1 [51.5 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libwayland-server0 armhf 1.21.0-1 [29.3 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libgbm1 armhf 22.2.0-1+rpi1 [74.8 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libglapi-mesa armhf 22.2.0-1+rpi1 [84.6 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libwayland-client0 armhf 1.21.0-1 [23.3 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libx11-xcb1 armhf 2:1.8.1-2 [203 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libxcb-present0 armhf 1.15-1 [105 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxcb-sync1 armhf 1.15-1 [108 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xfixes0 armhf 1.15-1 [109 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libegl-mesa0 armhf 22.2.0-1+rpi1 [129 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libegl1 armhf 1.5.0-1 [29.6 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libgles2 armhf 1.5.0-1 [18.6 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libevdev2 armhf 1.13.0+dfsg-1+rpi1 [27.9 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libmtdev1 armhf 1.1.6-1 [22.0 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgudev-1.0-0 armhf 237-2 [13.2 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libwacom-common all 2.5.0-1 [57.4 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libwacom9 armhf 2.5.0-1 [18.6 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libinput-bin armhf 1.22.0-1 [21.2 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libinput10 armhf 1.22.0-1 [105 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libmd4c0 armhf 0.4.8-1 [39.4 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libqt5dbus5 armhf 5.15.6+dfsg-2+rpi1+b1 [182 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libqt5network5 armhf 5.15.6+dfsg-2+rpi1+b1 [570 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libxcb-util1 armhf 0.4.0-1 [22.1 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libxcb-image0 armhf 0.4.0-2 [21.9 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libxcb-randr0 armhf 1.15-1 [116 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shape0 armhf 1.15-1 [106 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xinerama0 armhf 1.15-1 [105 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xinput0 armhf 1.15-1 [127 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xkb1 armhf 1.15-1 [126 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf xkb-data all 2.35.1-1 [764 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libxkbcommon0 armhf 1.4.1-1 [96.2 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libxkbcommon-x11-0 armhf 1.4.1-1 [15.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libqt5gui5 armhf 5.15.6+dfsg-2+rpi1+b1 [2548 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libqt5widgets5 armhf 5.15.6+dfsg-2+rpi1+b1 [2038 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libqt5svg5 armhf 5.15.6-2 [113 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf poppler-data all 0.4.11-1 [1608 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.8-3 [769 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.8-3 [1478 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.8-3 [1597 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.8-3 [506 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libpam-systemd armhf 251.6-1+rpi1 [196 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.10+dfsg-1 [123 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf gtk-update-icon-cache armhf 3.24.35-1 [41.3 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf adwaita-icon-theme all 43-1 [5124 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf at-spi2-common all 2.46.0-4 [161 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.32-2 [1218 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf dbus-user-session armhf 1.14.4-1 [112 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libdconf1 armhf 0.40.0-3 [42.5 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf dconf-service armhf 0.40.0-3 [35.4 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf dconf-gsettings-backend armhf 0.40.0-3 [29.4 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf fonts-gfs-baskerville all 1.1-6 [43.7 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf fonts-gfs-porson all 1.1-7 [33.8 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf fonts-lmodern all 2.005-1 [4540 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libgs-common all 10.0.0~dfsg-7 [148 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libgs10-common all 10.0.0~dfsg-7 [586 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common-data armhf 0.8-6+b1 [124 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common3 armhf 0.8-6+b1 [55.8 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libavahi-client3 armhf 0.8-6+b1 [58.5 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libcups2 armhf 2.4.2-1+b1 [311 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libidn12 armhf 1.41-1 [80.8 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libijs-0.35 armhf 0.35-15 [14.7 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libjbig2dec0 armhf 0.19-3+b2 [58.6 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libgs10 armhf 10.0.0~dfsg-7 [2035 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf ghostscript armhf 10.0.0~dfsg-7 [56.3 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf gnuplot-data all 5.4.4+dfsg1-2 [72.1 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20221030-2 [76.2 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libaom3 armhf 3.5.0-1 [1302 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf libdav1d6 armhf 1.0.0-2+rpi1 [205 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf libabsl20210324 armhf 0~20210324.2-4+rpi1 [331 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf libgav1-1 armhf 0.18.0-1+rpi1 [272 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf librav1e0 armhf 0.5.1-5 [525 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf libsvtav1enc1 armhf 1.3.0+dfsg-1 [882 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf libyuv0 armhf 0.0~git20221118.ea26d7a-2 [80.0 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf libavif15 armhf 0.11.1-1 [84.1 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf libde265-0 armhf 1.0.9-1+rpi1 [186 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf libx265-199 armhf 3.5-2 [548 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf libheif1 armhf 1.13.0-1 [169 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf libgd3 armhf 2.3.3-7 [102 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf liblua5.4-0 armhf 5.4.4-3 [110 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf libqt5printsupport5 armhf 5.15.6+dfsg-2+rpi1+b1 [181 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-2 [199 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf libwxbase3.2-0 armhf 3.2.1+dfsg-1 [819 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf libxcb-glx0 armhf 1.15-1 [121 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf libxfixes3 armhf 1:6.0.0-2 [21.2 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf libdrm-amdgpu1 armhf 2.4.114-1+rpi1 [19.3 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf libdrm-nouveau2 armhf 2.4.114-1+rpi1 [17.0 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf libdrm-radeon1 armhf 2.4.114-1+rpi1 [20.7 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-3 [5798 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf libllvm14 armhf 1:14.0.6-8+rpi1 [19.5 MB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf libsensors-config all 1:3.6.0-7.1 [14.3 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf libsensors5 armhf 1:3.6.0-7.1 [31.6 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf libgl1-mesa-dri armhf 22.2.0-1+rpi1 [5593 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf libglx-mesa0 armhf 22.2.0-1+rpi1 [171 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf libglx0 armhf 1.5.0-1 [32.4 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf libgl1 armhf 1.5.0-1 [91.8 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf libatk1.0-0 armhf 2.46.0-4 [41.4 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf libatspi2.0-0 armhf 2.46.0-4 [63.8 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf libatk-bridge2.0-0 armhf 2.46.0-4 [55.4 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf libcairo-gobject2 armhf 1.16.0-6 [125 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf libcolord2 armhf 1.4.6-1 [122 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf libepoxy0 armhf 1.5.10-1 [172 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf libwayland-egl1 armhf 1.21.0-1 [8448 B]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf libxcomposite1 armhf 1:0.4.5-1 [16.2 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf libxcursor1 armhf 1:1.2.1-1 [38.0 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf libxdamage1 armhf 1:1.1.5-2 [15.2 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf libxinerama1 armhf 2:1.1.4-3 [17.4 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf libxrandr2 armhf 2:1.5.2-2 [35.5 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf libgtk-3-common all 3.24.35-1 [3724 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf libgtk-3-0 armhf 3.24.35-1 [2357 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf libnotify4 armhf 0.8.1-1 [27.5 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf libxtst6 armhf 2:1.2.3-1.1 [26.3 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf libwxgtk3.2-0 armhf 3.2.1+dfsg-1 [3764 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf gnuplot-qt armhf 5.4.4+dfsg1-2 [896 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf gnuplot all 5.4.4+dfsg1-2 [5844 B]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf libapache-pom-java all 25-2 [5260 B]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf libcommons-parent-java all 43-1 [10.8 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf libcommons-logging-java all 1.2-3 [62.4 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf libfontbox-java all 1:1.8.16-2 [211 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [116 kB]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf libkpathsea6 armhf 2022.20220321.62855-4+b1 [142 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf libptexenc1 armhf 2022.20220321.62855-4+b1 [40.2 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.8-3 [1458 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.8-3 [2935 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.6-1 [22.0 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.6-1 [1068 B]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf libsimde-dev all 0.7.2-6 [259 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf libsynctex2 armhf 2022.20220321.62855-4+b1 [46.4 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf libteckit0 armhf 2.5.11+ds1-1 [256 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf libtexlua53-5 armhf 2022.20220321.62855-4+b1 [80.6 kB]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf libtexluajit2 armhf 2022.20220321.62855-4+b1 [187 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf libxmu6 armhf 2:1.1.3-3 [52.0 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf libxaw7 armhf 2:1.0.14-1 [165 kB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB]
Get:288 http://172.17.4.1/private bookworm-staging/main armhf tex-common all 6.18 [32.5 kB]
Get:289 http://172.17.4.1/private bookworm-staging/main armhf preview-latex-style all 12.2-1 [201 kB]
Get:290 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.6-1 [1060 B]
Get:291 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.8-3 [509 kB]
Get:292 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.6-1 [25.4 kB]
Get:293 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.6-1 [1068 B]
Get:294 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.5.0-1 [278 kB]
Get:295 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.5.0-1 [519 kB]
Get:296 http://172.17.4.1/private bookworm-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:297 http://172.17.4.1/private bookworm-staging/main armhf texlive-binaries armhf 2022.20220321.62855-4+b1 [7470 kB]
Get:298 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:299 http://172.17.4.1/private bookworm-staging/main armhf texlive-base all 2022.20220923-2 [21.9 MB]
Get:300 http://172.17.4.1/private bookworm-staging/main armhf texlive-font-utils all 2022.20220923-3 [4121 kB]
Get:301 http://172.17.4.1/private bookworm-staging/main armhf texlive-fonts-recommended all 2022.20220923-2 [4988 kB]
Get:302 http://172.17.4.1/private bookworm-staging/main armhf texlive-lang-greek all 2022.20220923-1 [78.0 MB]
Get:303 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-base all 2022.20220923-2 [1171 kB]
Get:304 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-recommended all 2022.20220923-2 [8818 kB]
Get:305 http://172.17.4.1/private bookworm-staging/main armhf texlive-pictures all 2022.20220923-2 [15.3 MB]
Get:306 http://172.17.4.1/private bookworm-staging/main armhf texlive-latex-extra all 2022.20220923-3 [14.8 MB]
Get:307 http://172.17.4.1/private bookworm-staging/main armhf texlive-science all 2022.20220923-3 [3701 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up bsdutils (1:2.38.1-4) ...
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Selecting previously unselected package libargon2-1:armhf.
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Setting up libudev1:armhf (251.6-1+rpi1) ...
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Unpacking dmsetup (2:1.02.185-2) ...
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Unpacking libjson-c5:armhf (0.16-2) ...
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Unpacking libuuid1:armhf (2.38.1-4) over (2.38.1-1.1) ...
Setting up libuuid1:armhf (2.38.1-4) ...
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Unpacking libcryptsetup12:armhf (2:2.5.0-6) ...
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Setting up libmount1:armhf (2.38.1-4) ...
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Unpacking libsystemd0:armhf (251.6-1+rpi1) over (251.5-1+rpi1) ...
Setting up libsystemd0:armhf (251.6-1+rpi1) ...
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Unpacking systemd (251.6-1+rpi1) ...
Setting up libargon2-1:armhf (0~20171227-0.3) ...
Setting up libjson-c5:armhf (0.16-2) ...
Setting up libfdisk1:armhf (2.38.1-4) ...
Setting up libkmod2:armhf (30+20220905-1) ...
Setting up libapparmor1:armhf (3.0.7-1) ...
Setting up libip4tc2:armhf (1.8.8-1) ...
Setting up libsystemd-shared:armhf (251.6-1+rpi1) ...
Setting up mount (2.38.1-4) ...
Setting up libdevmapper1.02.1:armhf (2:1.02.185-2) ...
Setting up libcryptsetup12:armhf (2:2.5.0-6) ...
Setting up systemd (251.6-1+rpi1) ...
Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service.
Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service.
Initializing machine ID from random generator.
Setting up dmsetup (2:1.02.185-2) ...
Selecting previously unselected package systemd-sysv.
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Selecting previously unselected package libdbus-1-3:armhf.
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Unpacking libcc1-0:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
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Preparing to unpack .../0-libgomp1_12.2.0-9+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
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Unpacking gcc-12 (12.2.0-9+rpi1) over (12.2.0-3+rpi1) ...
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Setting up libstdc++6:armhf (12.2.0-9+rpi1) ...
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Selecting previously unselected package libicu72:armhf.
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Unpacking libxml2:armhf (2.9.14+dfsg-1.1) ...
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Selecting previously unselected package libqt5core5a:armhf.
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Unpacking libqt5core5a:armhf (5.15.6+dfsg-2+rpi1+b1) ...
Selecting previously unselected package libbrotli1:armhf.
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Setting up texlive-base (2022.20220923-2) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libgtk-3-0:armhf (3.24.35-1) ...
Setting up libqt5svg5:armhf (5.15.6-2) ...
Setting up texlive-lang-greek (2022.20220923-1) ...
Setting up texlive-font-utils (2022.20220923-3) ...
Setting up texlive-latex-base (2022.20220923-2) ...
Setting up texlive-latex-recommended (2022.20220923-2) ...
Setting up texlive-pictures (2022.20220923-2) ...
Setting up texlive-fonts-recommended (2022.20220923-2) ...
Setting up libwxgtk3.2-0:armhf (3.2.1+dfsg-1) ...
Setting up texlive-science (2022.20220923-3) ...
Setting up texlive-latex-extra (2022.20220923-3) ...
Setting up gnuplot-qt (5.4.4+dfsg1-2) ...
update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up gnuplot (5.4.4+dfsg1-2) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 adwaita-icon-theme_43-1 aglfn_1.7+git20191031.4036a9c-2 apt_2.5.3 at-spi2-common_2.46.0-4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 cython3_0.29.32-2 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-9 dbus_1.14.4-1 dbus-bin_1.14.4-1 dbus-daemon_1.14.4-1 dbus-session-bus-common_1.14.4-1 dbus-system-bus-common_1.14.4-1 dbus-user-session_1.14.4-1 dconf-gsettings-backend_0.40.0-3 dconf-service_0.40.0-3 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 dmsetup_2:1.02.185-2 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-gfs-baskerville_1.1-6 fonts-gfs-porson_1.1-7 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-6 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 ghostscript_10.0.0~dfsg-7 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gnuplot_5.4.4+dfsg1-2 gnuplot-data_5.4.4+dfsg1-2 gnuplot-qt_5.4.4+dfsg1-2 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gtk-update-icon-cache_3.24.35-1 gzip_1.12-1 hicolor-icon-theme_0.17-2 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: minimap2
Binary: minimap2, libminimap2-dev, python3-mappy
Architecture: any
Version: 2.24+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/lh3/minimap2
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/minimap2
Vcs-Git: https://salsa.debian.org/med-team/minimap2.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-all
Build-Depends: debhelper-compat (= 13), python3-setuptools, dh-python, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot, libsimde-dev
Package-List:
 libminimap2-dev deb libdevel optional arch=any
 minimap2 deb science optional arch=any
 python3-mappy deb python optional arch=any
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Files:
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.aaIPwXC9/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 30 19:57:09 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./minimap2_2.24+dfsg-3.dsc
dpkg-source: info: extracting minimap2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking minimap2_2.24+dfsg.orig.tar.xz
dpkg-source: info: unpacking minimap2_2.24+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying do_not_use_natbib.bst.patch
dpkg-source: info: applying ar.patch
dpkg-source: info: applying link_mappy_to_libminimap.patch
dpkg-source: info: applying python-sse4-arch.patch
dpkg-source: info: applying simde
dpkg-source: info: applying reenable-simde.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=f89ee6850c51463faed427366eb0b008
JOURNAL_STREAM=8:31299
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-ac44aae7-d123-42e3-bf8f-3215495c27d3
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c32196
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package minimap2
dpkg-buildpackage: info: source version 2.24+dfsg-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
	make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -fr gmon.out *.o a.out minimap2 sdust minimap2-lite *~ *.a *.dSYM build dist mappy*.so mappy.c python/mappy.c mappy.egg*
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
cd tex && make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/tex'
rm -fr *.toc *.aux *.bbl *.blg *.idx *.log *.out *~ minimap2.pdf
make[2]: Leaving directory '/<<PKGBUILDDIR>>/tex'
rm -f MT-human.mmi
rm -f tex/minimap2.aux tex/minimap2.bbl tex/minimap2.blg tex/minimap2.log tex/minimap2.out tex/minimap2.pdf
rm -f libminimap2.a
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch --with python3
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- -f Makefile.simde
	make -j4 "INSTALL=install --strip-program=true" -f Makefile.simde
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  main.c -o main.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  kthread.c -o kthread.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  kalloc.c -o kalloc.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  misc.c -o misc.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  bseq.c -o bseq.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  sketch.c -o sketch.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  sdust.c -o sdust.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  options.c -o options.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  index.c -o index.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  lchain.c -o lchain.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  align.c -o align.o
index.c: In function ‘mm_idx_load’:
index.c:519:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  519 |                 fread(&l, 1, 1, fp);
      |                 ^~~~~~~~~~~~~~~~~~~
index.c:522:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  522 |                         fread(s->name, 1, l, fp);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:525:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  525 |                 fread(&s->len, 4, 1, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:535:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  535 |                 fread(&b->n, 4, 1, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~
index.c:537:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |                 fread(b->p, 8, b->n, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:538:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  538 |                 fread(&size, 4, 1, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~
index.c:545:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  545 |                         fread(x, 8, 2, fp);
      |                         ^~~~~~~~~~~~~~~~~~
index.c:553:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  553 |                 fread(mi->S, 4, (sum_len + 7) / 8, fp);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  hit.c -o hit.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  seed.c -o seed.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  map.c -o map.o
map.c: In function ‘mm_map_frag’:
map.c:370:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  370 |                         fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
      |                                                          ~~^                                            ~~~~~~~~~~~~~
      |                                                            |                                                |
      |                                                            long int                                         size_t {aka unsigned int}
      |                                                          %d
map.c:370:70: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  370 |                         fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
      |                                                                    ~~^                                                 ~~~~~~~~~~~~
      |                                                                      |                                                     |
      |                                                                      long int                                              size_t {aka unsigned int}
      |                                                                    %d
map.c:370:82: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  370 |                         fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
      |                                                                                ~~^                                                   ~~~~~~~~~~~~
      |                                                                                  |                                                       |
      |                                                                                  long int                                                size_t {aka unsigned int}
      |                                                                                %d
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  format.c -o format.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  pe.c -o pe.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  esterr.c -o esterr.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  splitidx.c -o splitidx.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2  ksw2_ll_sse.c -o ksw2_ll_sse.o
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 -DKSW_SSE2_ONLY -D__SSE2__  ksw2_extz2_sse.c -o ksw2_extz2.o
ksw2_extz2_sse.c:5: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
    5 | #define SIMDE_ENABLE_NATIVE_ALIASES
      | 
<command-line>: note: this is the location of the previous definition
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 -DKSW_SSE2_ONLY -D__SSE2__  ksw2_extd2_sse.c -o ksw2_extd2.o
ksw2_extd2_sse.c:6: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
    6 | #define SIMDE_ENABLE_NATIVE_ALIASES
      | 
<command-line>: note: this is the location of the previous definition
cc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wdate-time -D_FORTIFY_SOURCE=2 -DKSW_SSE2_ONLY -D__SSE2__  ksw2_exts2_sse.c -o ksw2_exts2.o
ksw2_exts2_sse.c:6: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
    6 | #define SIMDE_ENABLE_NATIVE_ALIASES
      | 
<command-line>: note: this is the location of the previous definition
rm -f libminimap2.a
ar csrD libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o lchain.o align.o hit.o seed.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o ksw2_extz2.o ksw2_extd2.o ksw2_exts2.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -DHAVE_KALLOC -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
cd tex && make
make[2]: Entering directory '/<<PKGBUILDDIR>>/tex'
gnuplot roc.gp
epstopdf --outfile roc-color.pdf roc-color.eps
pdflatex minimap2; bibtex minimap2; pdflatex minimap2; pdflatex minimap2;
This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./minimap2.tex
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\OT1/phv/b/n/8 Results: \OT1/phv/m/n/8 Minimap2 is a general-purpose alignment 
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\OT1/ptm/m/n/9 mRNAs as well. Minimap2 becomes a first RNA-seq aligner
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\OT1/ptm/m/n/9 Direct RNA-seq dataset ([]http://bit.ly/na12878ont[]). Minimap2

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\OT1/ptm/m/n/9 v3.5 ([]Depristo et al.[], []2011[]). This run was sequenced fro
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[]\OT1/ptm/m/n/7 Li, H. et al. (2009).  The Sequence Alignment/Map format and S
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make[2]: Leaving directory '/<<PKGBUILDDIR>>/tex'
dh_auto_build --buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build 
running build
running build_ext
cythoning python/mappy.pyx to python/mappy.c
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/python/mappy.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
building 'mappy' extension
creating build
creating build/temp.linux-armhf-cpython-310
creating build/temp.linux-armhf-cpython-310/python
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c align.c -o build/temp.linux-armhf-cpython-310/align.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
align.c: In function ‘mm_get_hplen_back’:
align.c:349:43: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  349 |                 if (mm_seq4_get(mi->S, i) != c) break;
      |                                           ^~
align.c: In function ‘mm_seed_ext_score’:
align.c:536:56: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
  536 |         re = re + ext_len < (int32_t)mi->seq[rid].len? re + ext_len : mi->seq[rid].len;
      |                                                        ^~~~~~~~~~~~
align.c: In function ‘mm_align1’:
align.c:630:59: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
  630 |                 re0 = re + l < (int32_t)mi->seq[rid].len? re + l : mi->seq[rid].len;
      |                                                           ^~~~~~
align.c:682:65: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
  682 |                         l = l < (int32_t)mi->seq[rid].len - re? l : mi->seq[rid].len - re;
      |                                                                 ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c bseq.c -o build/temp.linux-armhf-cpython-310/bseq.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c esterr.c -o build/temp.linux-armhf-cpython-310/esterr.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c format.c -o build/temp.linux-armhf-cpython-310/format.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c hit.c -o build/temp.linux-armhf-cpython-310/hit.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
hit.c: In function ‘mm_hit_sort’:
hit.c:190:55: warning: variable ‘no_cigar’ set but not used [-Wunused-but-set-variable]
  190 |         int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
      |                                                       ^~~~~~~~
hit.c:190:40: warning: variable ‘has_cigar’ set but not used [-Wunused-but-set-variable]
  190 |         int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
      |                                        ^~~~~~~~~
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c index.c -o build/temp.linux-armhf-cpython-310/index.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
index.c: In function ‘mm_idx_name2id’:
index.c:149:32: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare]
  149 |         return k == kh_end(h)? -1 : kh_val(h, k);
      |                                ^~
index.c: In function ‘mm_idx_gen’:
index.c:381:70: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
  381 |         pl.mini_batch_size = (uint64_t)mini_batch_size < batch_size? mini_batch_size : batch_size;
      |                                                                      ^~~~~~~~~~~~~~~
index.c: In function ‘mm_idx_dump’:
index.c:482:23: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  482 |         for (i = 0; i < 1<<mi->b; ++i) {
      |                       ^
index.c: In function ‘mm_idx_load’:
index.c:530:23: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  530 |         for (i = 0; i < 1<<mi->b; ++i) {
      |                       ^
index.c: In function ‘mm_idx_bed_read’:
index.c:747:23: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
  747 |         for (i = 0; i < mi->n_seq; ++i) // TODO: eliminate redundant intervals
      |                       ^
index.c: In function ‘mm_idx_bed_junc’:
index.c:757:42: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
  757 |         if (mi->I == 0 || ctg < 0 || ctg >= mi->n_seq) return -1;
      |                                          ^~
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c kalloc.c -o build/temp.linux-armhf-cpython-310/kalloc.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c ksw2_extd2_sse.c -o build/temp.linux-armhf-cpython-310/ksw2_extd2_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_extd2_sse.c:6: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
    6 | #define SIMDE_ENABLE_NATIVE_ALIASES
      | 
<command-line>: note: this is the location of the previous definition
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c ksw2_exts2_sse.c -o build/temp.linux-armhf-cpython-310/ksw2_exts2_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_exts2_sse.c:6: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
    6 | #define SIMDE_ENABLE_NATIVE_ALIASES
      | 
<command-line>: note: this is the location of the previous definition
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c ksw2_extz2_sse.c -o build/temp.linux-armhf-cpython-310/ksw2_extz2_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
ksw2_extz2_sse.c:5: warning: "SIMDE_ENABLE_NATIVE_ALIASES" redefined
    5 | #define SIMDE_ENABLE_NATIVE_ALIASES
      | 
<command-line>: note: this is the location of the previous definition
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c ksw2_ll_sse.c -o build/temp.linux-armhf-cpython-310/ksw2_ll_sse.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c kthread.c -o build/temp.linux-armhf-cpython-310/kthread.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c lchain.c -o build/temp.linux-armhf-cpython-310/lchain.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
lchain.c: In function ‘mg_chain_bk_end’:
lchain.c:18:37: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   18 |                 s = i < 0? z[k].x : (int32_t)z[k].x - f[i];
      |                                     ^~~~~~~~~~~~~~~~~~~~~~
lchain.c: In function ‘mg_chain_backtrack’:
lchain.c:51:46: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   51 |                         sc = i < 0? z[k].x : (int32_t)z[k].x - f[i];
      |                                              ^~~~~~~~~~~~~~~~~~~~~~
lchain.c:66:46: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   66 |                         sc = i < 0? z[k].x : (int32_t)z[k].x - f[i];
      |                                              ^~~~~~~~~~~~~~~~~~~~~~
lchain.c: In function ‘mg_lchain_dp’:
lchain.c:190:56: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare]
  190 |                 if (max_ii < 0 || a[i].x - a[max_ii].x > (int64_t)max_dist_x) {
      |                                                        ^
lchain.c:204:57: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘long long int’ [-Wsign-compare]
  204 |                 if (max_ii < 0 || (a[i].x - a[max_ii].x <= (int64_t)max_dist_x && f[max_ii] < f[i]))
      |                                                         ^~
lchain.c: In function ‘mg_lchain_rmq’:
lchain.c:295:117: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  295 |                 while (st < i && (a[i].x>>32 != a[st].x>>32 || a[i].x > a[st].x + max_dist || krmq_size(head, root) > cap_rmq_size)) {
      |                                                                                                                     ^
lchain.c:304:155: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  304 |                         while (st_inner < i && (a[i].x>>32 != a[st_inner].x>>32 || a[i].x > a[st_inner].x + max_dist_inner || krmq_size(head, root_inner) > cap_rmq_size)) {
      |                                                                                                                                                           ^
lchain.c:357:34: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
  357 |                 if (max_rmq_size < krmq_size(head, root)) max_rmq_size = krmq_size(head, root);
      |                                  ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c map.c -o build/temp.linux-armhf-cpython-310/map.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
map.c: In function ‘mm_dust_minier’:
map.c:53:70: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
   53 |                                 int ss = s > (int32_t)(dreg[v]>>32)? s : dreg[v]>>32;
      |                                                                      ^
map.c:54:64: warning: operand of ‘?:’ changes signedness from ‘int32_t’ {aka ‘int’} to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
   54 |                                 int ee = e < (int32_t)dreg[v]? e : (uint32_t)dreg[v];
      |                                                                ^
map.c: In function ‘mm_map_frag’:
map.c:370:60: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  370 |                         fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
      |                                                          ~~^                                            ~~~~~~~~~~~~~
      |                                                            |                                                |
      |                                                            long int                                         size_t {aka unsigned int}
      |                                                          %d
map.c:370:70: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  370 |                         fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
      |                                                                    ~~^                                                 ~~~~~~~~~~~~
      |                                                                      |                                                     |
      |                                                                      long int                                              size_t {aka unsigned int}
      |                                                                    %d
map.c:370:82: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  370 |                         fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
      |                                                                                ~~^                                                   ~~~~~~~~~~~~
      |                                                                                  |                                                       |
      |                                                                                  long int                                                size_t {aka unsigned int}
      |                                                                                %d
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c misc.c -o build/temp.linux-armhf-cpython-310/misc.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c options.c -o build/temp.linux-armhf-cpython-310/options.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c pe.c -o build/temp.linux-armhf-cpython-310/pe.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c python/mappy.c -o build/temp.linux-armhf-cpython-310/python/mappy.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c sdust.c -o build/temp.linux-armhf-cpython-310/sdust.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c seed.c -o build/temp.linux-armhf-cpython-310/seed.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
seed.c: In function ‘mm_seed_mz_flt’:
seed.c:9:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare]
    9 |         if (mv->n <= q_occ_max || q_occ_frac <= 0.0f || q_occ_max <= 0) return;
      |                   ^~
seed.c: In function ‘mm_seed_select’:
seed.c:65:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   65 |                 if (a[i].n > max_occ) ++m;
      |                            ^
seed.c:68:38: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   68 |                 if (i == n || a[i].n <= max_occ) {
      |                                      ^~
seed.c:71:54: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
   71 |                                 int32_t pe = i == n? len : (uint32_t)a[i].q_pos>>1;
      |                                                      ^~~
seed.c:81:60: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   81 |                                                 if (a[j].n < (int32_t)(b[0]>>32)) { // then update the heap
      |                                                            ^
seed.c:90:52: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   90 |                                         if (a[j].n > max_max_occ)
      |                                                    ^
seed.c: In function ‘mm_collect_matches’:
seed.c:109:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  109 |                 for (i = 0; i < n_m0; ++i)
      |                               ^
seed.c:110:36: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  110 |                         if (m[i].n > max_occ)
      |                                    ^
seed.c:113:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  113 |         for (i = 0, n_m = 0, *rep_len = 0, *n_a = 0; i < n_m0; ++i) {
      |                                                        ^
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c sketch.c -o build/temp.linux-armhf-cpython-310/sketch.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.10 -c splitidx.c -o build/temp.linux-armhf-cpython-310/splitidx.o -DHAVE_KALLOC -DKSW_SSE2_ONLY -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-310/align.o build/temp.linux-armhf-cpython-310/bseq.o build/temp.linux-armhf-cpython-310/esterr.o build/temp.linux-armhf-cpython-310/format.o build/temp.linux-armhf-cpython-310/hit.o build/temp.linux-armhf-cpython-310/index.o build/temp.linux-armhf-cpython-310/kalloc.o build/temp.linux-armhf-cpython-310/ksw2_extd2_sse.o build/temp.linux-armhf-cpython-310/ksw2_exts2_sse.o build/temp.linux-armhf-cpython-310/ksw2_extz2_sse.o build/temp.linux-armhf-cpython-310/ksw2_ll_sse.o build/temp.linux-armhf-cpython-310/kthread.o build/temp.linux-armhf-cpython-310/lchain.o build/temp.linux-armhf-cpython-310/map.o build/temp.linux-armhf-cpython-310/misc.o build/temp.linux-armhf-cpython-310/options.o build/temp.linux-armhf-cpython-310/pe.o build/temp.linux-armhf-cpython-310/python/mappy.o build/temp.linux-armhf-cpython-310/sdust.o build/temp.linux-armhf-cpython-310/seed.o build/temp.linux-armhf-cpython-310/sketch.o build/temp.linux-armhf-cpython-310/splitidx.o -L/usr/lib/arm-linux-gnueabihf -lz -lm -lpthread -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/mappy.cpython-310-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.10
copying and adjusting python/minimap2.py -> build/scripts-3.10
changing mode of build/scripts-3.10/minimap2.py from 644 to 755
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
debian/test_script
[M::mm_idx_gen::0.004*1.47] collected minimizers
[M::mm_idx_gen::0.006*1.83] sorted minimizers
[M::main::0.006*1.82] loaded/built the index for 1 target sequence(s)
[M::mm_mapopt_update::0.007*1.74] mid_occ = 10
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.007*1.69] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569
[M::worker_pipeline::0.405*1.01] mapped 1 sequences
[M::main] Version: 2.24-r1122
[M::main] CMD: minimap2 -a test/MT-human.fa test/MT-orang.fa
[M::main] Real time: 0.408 sec; CPU: 0.413 sec; Peak RSS: 0.003 GB
[M::mm_idx_gen::0.006*1.50] collected minimizers
[M::mm_idx_gen::0.009*1.89] sorted minimizers
[M::main::0.015*1.52] loaded/built the index for 1 target sequence(s)
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.015*1.50] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569
[M::main] Version: 2.24-r1122
[M::main] CMD: minimap2 -d MT-human.mmi test/MT-human.fa
[M::main] Real time: 0.018 sec; CPU: 0.025 sec; Peak RSS: 0.003 GB
[M::main::0.012*1.14] loaded/built the index for 1 target sequence(s)
[M::mm_mapopt_update::0.013*1.13] mid_occ = 10
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.014*1.13] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326; total length: 16569
[M::worker_pipeline::0.451*1.01] mapped 1 sequences
[M::main] Version: 2.24-r1122
[M::main] CMD: minimap2 -a MT-human.mmi test/MT-orang.fa
[M::main] Real time: 0.455 sec; CPU: 0.458 sec; Peak RSS: 0.004 GB
rm test.sam
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_installdirs -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
dh_auto_install --buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_ext
skipping 'python/mappy.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/mappy.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages
running install_egg_info
running egg_info
creating mappy.egg-info
writing mappy.egg-info/PKG-INFO
writing dependency_links to mappy.egg-info/dependency_links.txt
writing top-level names to mappy.egg-info/top_level.txt
writing manifest file 'mappy.egg-info/SOURCES.txt'
reading manifest file 'mappy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'sse2neon/emmintrin.h'
adding license file 'LICENSE.txt'
writing manifest file 'mappy.egg-info/SOURCES.txt'
Copying mappy.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/mappy-2.24.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/tmp/usr/bin
copying build/scripts-3.10/minimap2.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/tmp/usr/bin/minimap2.py to 755
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installman --language=C
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_python3 -a
   dh_lintian -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   debian/rules override_dh_strip
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_strip
ranlib /<<PKGBUILDDIR>>/debian/libminimap2-dev/usr/lib/libminimap2.a
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minimap2/usr/bin/minimap2 was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libminimap2-dev: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'minimap2' in '../minimap2_2.24+dfsg-3_armhf.deb'.
dpkg-deb: building package 'libminimap2-dev' in '../libminimap2-dev_2.24+dfsg-3_armhf.deb'.
dpkg-deb: building package 'python3-mappy-dbgsym' in '../python3-mappy-dbgsym_2.24+dfsg-3_armhf.deb'.
dpkg-deb: building package 'python3-mappy' in '../python3-mappy_2.24+dfsg-3_armhf.deb'.
dpkg-deb: building package 'minimap2-dbgsym' in '../minimap2-dbgsym_2.24+dfsg-3_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../minimap2_2.24+dfsg-3_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../minimap2_2.24+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-03T07:04:56Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


minimap2_2.24+dfsg-3_armhf.changes:
-----------------------------------

Format: 1.8
Date: Wed, 30 Nov 2022 20:52:21 +0100
Source: minimap2
Binary: libminimap2-dev minimap2 minimap2-dbgsym python3-mappy python3-mappy-dbgsym
Architecture: armhf
Version: 2.24+dfsg-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libminimap2-dev - development headers for libminimap
 minimap2   - versatile pairwise aligner for genomic and spliced nucleotide seq
 python3-mappy - Python3 interface minimap2
Changes:
 minimap2 (2.24+dfsg-3) unstable; urgency=medium
 .
   * Fix watch file
   * Standards-Version: 4.6.1 (routine-update)
   * Update lintian override info format in d/python3-mappy.lintian-overrides on
     line 2.
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 c804cc649381c3e810f5b59b641155e88fedd3db 14586 minimap2_2.24+dfsg-3_armhf.buildinfo
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Files:
 09a6e238c621e234a48bf711134538c7 122880 libdevel optional libminimap2-dev_2.24+dfsg-3_armhf.deb
 c41abc926f76d8a9c6b69195724f800d 269844 debug optional minimap2-dbgsym_2.24+dfsg-3_armhf.deb
 d21cc515127363f12062300d7be02b42 14586 science optional minimap2_2.24+dfsg-3_armhf.buildinfo
 ea1a19db4e1423315e56da28fc52a252 392140 science optional minimap2_2.24+dfsg-3_armhf.deb
 eb5d54d5cb48ffca7f34123d449c50d7 479848 debug optional python3-mappy-dbgsym_2.24+dfsg-3_armhf.deb
 b10204c90bfbf8d24ad9c158cf04fc2c 143664 python optional python3-mappy_2.24+dfsg-3_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: minimap2
Binary: libminimap2-dev minimap2 minimap2-dbgsym python3-mappy python3-mappy-dbgsym
Architecture: armhf
Version: 2.24+dfsg-3
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 03 Dec 2022 07:04:54 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 adduser (= 3.129),
 adwaita-icon-theme (= 43-1),
 aglfn (= 1.7+git20191031.4036a9c-2),
 apt (= 2.5.3),
 at-spi2-common (= 2.46.0-4),
 autoconf (= 2.71-2),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-10),
 autotools-dev (= 20220109.1),
 base-files (= 12.3+rpi1),
 base-passwd (= 3.6.1),
 bash (= 5.2~rc2-2),
 binutils (= 2.39-6+rpi1),
 binutils-arm-linux-gnueabihf (= 2.39-6+rpi1),
 binutils-common (= 2.39-6+rpi1),
 bsdextrautils (= 2.38.1-4),
 bsdutils (= 1:2.38.1-4),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-5+b2),
 coreutils (= 9.1-1),
 cpp (= 4:12.2.0-1+rpi1),
 cpp-12 (= 12.2.0-9+rpi1),
 cython3 (= 0.29.32-2),
 d-shlibs (= 0.104),
 dash (= 0.5.11+git20210903+057cd650a4ed-9),
 dbus (= 1.14.4-1),
 dbus-bin (= 1.14.4-1),
 dbus-daemon (= 1.14.4-1),
 dbus-session-bus-common (= 1.14.4-1),
 dbus-system-bus-common (= 1.14.4-1),
 dbus-user-session (= 1.14.4-1),
 dconf-gsettings-backend (= 0.40.0-3),
 dconf-service (= 0.40.0-3),
 debconf (= 1.5.79),
 debhelper (= 13.11.1),
 debianutils (= 5.7-0.3),
 dh-autoreconf (= 20),
 dh-python (= 5.20220819+rpi1),
 dh-strip-nondeterminism (= 1.13.0-2),
 diffutils (= 1:3.8-1),
 dirmngr (= 2.2.39-1),
 dmsetup (= 2:1.02.185-2),
 dpkg (= 1.21.9+rpi1),
 dpkg-dev (= 1.21.9+rpi1),
 dwz (= 0.14+20220924-2),
 file (= 1:5.41-4),
 findutils (= 4.9.0-3),
 fontconfig (= 2.13.1-4.5),
 fontconfig-config (= 2.13.1-4.5),
 fonts-dejavu-core (= 2.37-2),
 fonts-gfs-baskerville (= 1.1-6),
 fonts-gfs-porson (= 1.1-7),
 fonts-lmodern (= 2.005-1),
 fonts-urw-base35 (= 20200910-6),
 g++ (= 4:12.2.0-1+rpi1),
 g++-12 (= 12.2.0-9+rpi1),
 gcc (= 4:12.2.0-1+rpi1),
 gcc-12 (= 12.2.0-9+rpi1),
 gcc-12-base (= 12.2.0-9+rpi1),
 gettext (= 0.21-10),
 gettext-base (= 0.21-10),
 ghostscript (= 10.0.0~dfsg-7),
 gnupg (= 2.2.39-1),
 gnupg-l10n (= 2.2.39-1),
 gnupg-utils (= 2.2.39-1),
 gnuplot (= 5.4.4+dfsg1-2),
 gnuplot-data (= 5.4.4+dfsg1-2),
 gnuplot-qt (= 5.4.4+dfsg1-2),
 gpg (= 2.2.39-1),
 gpg-agent (= 2.2.39-1),
 gpg-wks-client (= 2.2.39-1),
 gpg-wks-server (= 2.2.39-1),
 gpgconf (= 2.2.39-1),
 gpgsm (= 2.2.39-1),
 gpgv (= 2.2.39-1),
 grep (= 3.7-1),
 groff-base (= 1.22.4-9),
 gtk-update-icon-cache (= 3.24.35-1),
 gzip (= 1.12-1),
 hicolor-icon-theme (= 0.17-2),
 hostname (= 3.23),
 init-system-helpers (= 1.64),
 intltool-debian (= 0.35.0+20060710.6),
 libabsl20210324 (= 0~20210324.2-4+rpi1),
 libacl1 (= 2.3.1-1),
 libaom3 (= 3.5.0-1),
 libapache-pom-java (= 25-2),
 libapparmor1 (= 3.0.7-1),
 libapt-pkg6.0 (= 2.5.3),
 libarchive-zip-perl (= 1.68-1),
 libargon2-1 (= 0~20171227-0.3),
 libasan8 (= 12.2.0-9+rpi1),
 libassuan0 (= 2.5.5-4),
 libatk-bridge2.0-0 (= 2.46.0-4),
 libatk1.0-0 (= 2.46.0-4),
 libatomic1 (= 12.2.0-9+rpi1),
 libatspi2.0-0 (= 2.46.0-4),
 libattr1 (= 1:2.5.1-1),
 libaudit-common (= 1:3.0.7-1.1),
 libaudit1 (= 1:3.0.7-1.1),
 libavahi-client3 (= 0.8-6+b1),
 libavahi-common-data (= 0.8-6+b1),
 libavahi-common3 (= 0.8-6+b1),
 libavif15 (= 0.11.1-1),
 libbinutils (= 2.39-6+rpi1),
 libblkid1 (= 2.38.1-4),
 libbrotli1 (= 1.0.9-2+b2),
 libbsd0 (= 0.11.7-1),
 libbz2-1.0 (= 1.0.8-5+b2),
 libc-bin (= 2.35-2+rpi1),
 libc-dev-bin (= 2.35-2+rpi1),
 libc6 (= 2.35-2+rpi1),
 libc6-dev (= 2.35-2+rpi1),
 libcairo-gobject2 (= 1.16.0-6),
 libcairo2 (= 1.16.0-6),
 libcap-ng0 (= 0.8.3-1),
 libcap2 (= 1:2.44-1),
 libcc1-0 (= 12.2.0-9+rpi1),
 libcolord2 (= 1.4.6-1),
 libcom-err2 (= 1.46.6~rc1-1),
 libcommons-logging-java (= 1.2-3),
 libcommons-parent-java (= 43-1),
 libcrypt-dev (= 1:4.4.28-2),
 libcrypt1 (= 1:4.4.28-2),
 libcryptsetup12 (= 2:2.5.0-6),
 libctf-nobfd0 (= 2.39-6+rpi1),
 libctf0 (= 2.39-6+rpi1),
 libcups2 (= 2.4.2-1+b1),
 libdatrie1 (= 0.2.13-2+b2),
 libdav1d6 (= 1.0.0-2+rpi1),
 libdb5.3 (= 5.3.28+dfsg1-0.10),
 libdbus-1-3 (= 1.14.4-1),
 libdconf1 (= 0.40.0-3),
 libde265-0 (= 1.0.9-1+rpi1),
 libdebconfclient0 (= 0.264),
 libdebhelper-perl (= 13.11.1),
 libdeflate0 (= 1.14-1),
 libdevmapper1.02.1 (= 2:1.02.185-2),
 libdouble-conversion3 (= 3.2.1-1),
 libdpkg-perl (= 1.21.9+rpi1),
 libdrm-amdgpu1 (= 2.4.114-1+rpi1),
 libdrm-common (= 2.4.114-1+rpi1),
 libdrm-nouveau2 (= 2.4.114-1+rpi1),
 libdrm-radeon1 (= 2.4.114-1+rpi1),
 libdrm2 (= 2.4.114-1+rpi1),
 libedit2 (= 3.1-20221030-2),
 libegl-mesa0 (= 22.2.0-1+rpi1),
 libegl1 (= 1.5.0-1),
 libelf1 (= 0.187-2+rpi2),
 libepoxy0 (= 1.5.10-1),
 libevdev2 (= 1.13.0+dfsg-1+rpi1),
 libexpat1 (= 2.5.0-1),
 libexpat1-dev (= 2.5.0-1),
 libfdisk1 (= 2.38.1-4),
 libffi8 (= 3.4.2-4),
 libfile-stripnondeterminism-perl (= 1.13.0-2),
 libfontbox-java (= 1:1.8.16-2),
 libfontconfig1 (= 2.13.1-4.5),
 libfontenc1 (= 1:1.1.4-1),
 libfreetype6 (= 2.12.1+dfsg-3),
 libfribidi0 (= 1.0.8-2.1),
 libgav1-1 (= 0.18.0-1+rpi1),
 libgbm1 (= 22.2.0-1+rpi1),
 libgcc-12-dev (= 12.2.0-9+rpi1),
 libgcc-s1 (= 12.2.0-9+rpi1),
 libgcrypt20 (= 1.10.1-2+b2),
 libgd3 (= 2.3.3-7),
 libgdbm-compat4 (= 1.23-3),
 libgdbm6 (= 1.23-3),
 libgdk-pixbuf-2.0-0 (= 2.42.10+dfsg-1),
 libgdk-pixbuf2.0-common (= 2.42.10+dfsg-1),
 libgl1 (= 1.5.0-1),
 libgl1-mesa-dri (= 22.2.0-1+rpi1),
 libglapi-mesa (= 22.2.0-1+rpi1),
 libgles2 (= 1.5.0-1),
 libglib2.0-0 (= 2.74.1-2),
 libglvnd0 (= 1.5.0-1),
 libglx-mesa0 (= 22.2.0-1+rpi1),
 libglx0 (= 1.5.0-1),
 libgmp10 (= 2:6.2.1+dfsg1-1.1),
 libgnutls30 (= 3.7.8-2),
 libgomp1 (= 12.2.0-9+rpi1),
 libgpg-error0 (= 1.45-2),
 libgraphite2-3 (= 1.3.14-1),
 libgs-common (= 10.0.0~dfsg-7),
 libgs10 (= 10.0.0~dfsg-7),
 libgs10-common (= 10.0.0~dfsg-7),
 libgssapi-krb5-2 (= 1.20-1),
 libgtk-3-0 (= 3.24.35-1),
 libgtk-3-common (= 3.24.35-1),
 libgudev-1.0-0 (= 237-2),
 libharfbuzz0b (= 5.2.0-2+b1),
 libheif1 (= 1.13.0-1),
 libhogweed6 (= 3.8.1-2),
 libice6 (= 2:1.0.10-1),
 libicu72 (= 72.1-3),
 libidn12 (= 1.41-1),
 libidn2-0 (= 2.3.3-1),
 libijs-0.35 (= 0.35-15),
 libinput-bin (= 1.22.0-1),
 libinput10 (= 1.22.0-1),
 libip4tc2 (= 1.8.8-1),
 libisl23 (= 0.25-1),
 libjbig0 (= 2.1-3.1+b2),
 libjbig2dec0 (= 0.19-3+b2),
 libjpeg62-turbo (= 1:2.1.2-1),
 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
 libjs-sphinxdoc (= 4.5.0-4),
 libjs-underscore (= 1.13.4~dfsg+~1.11.4-2),
 libjson-c5 (= 0.16-2),
 libk5crypto3 (= 1.20-1),
 libkeyutils1 (= 1.6.3-1),
 libkmod2 (= 30+20220905-1),
 libkpathsea6 (= 2022.20220321.62855-4+b1),
 libkrb5-3 (= 1.20-1),
 libkrb5support0 (= 1.20-1),
 libksba8 (= 1.6.0-3),
 liblcms2-2 (= 2.13.1-1),
 libldap-2.5-0 (= 2.5.13+dfsg-2+rpi1),
 liblerc4 (= 4.0.0+ds-2),
 libllvm14 (= 1:14.0.6-8+rpi1),
 liblua5.4-0 (= 5.4.4-3),
 liblz4-1 (= 1.9.4-1+rpi1),
 liblzma5 (= 5.2.5-2.1),
 libmagic-mgc (= 1:5.41-4),
 libmagic1 (= 1:5.41-4),
 libmd0 (= 1.0.4-2),
 libmd4c0 (= 0.4.8-1),
 libmount1 (= 2.38.1-4),
 libmpc3 (= 1.2.1-2),
 libmpdec3 (= 2.5.1-2+rpi1),
 libmpfr6 (= 4.1.0-3),
 libmtdev1 (= 1.1.6-1),
 libncursesw6 (= 6.3+20220423-2),
 libnettle8 (= 3.8.1-2),
 libnotify4 (= 0.8.1-1),
 libnpth0 (= 1.6-3),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libopenjp2-7 (= 2.5.0-1),
 libp11-kit0 (= 0.24.1-1),
 libpam-modules (= 1.5.2-5),
 libpam-modules-bin (= 1.5.2-5),
 libpam-runtime (= 1.5.2-5),
 libpam-systemd (= 251.6-1+rpi1),
 libpam0g (= 1.5.2-5),
 libpango-1.0-0 (= 1.50.10+ds-1),
 libpangocairo-1.0-0 (= 1.50.10+ds-1),
 libpangoft2-1.0-0 (= 1.50.10+ds-1),
 libpaper-utils (= 1.1.28),
 libpaper1 (= 1.1.28),
 libpcre2-16-0 (= 10.40-2),
 libpcre2-32-0 (= 10.40-2),
 libpcre2-8-0 (= 10.40-2),
 libpcre3 (= 2:8.39-14),
 libpdfbox-java (= 1:1.8.16-2),
 libperl5.36 (= 5.36.0-4),
 libpipeline1 (= 1.5.7-1),
 libpixman-1-0 (= 0.42.2-1),
 libpng16-16 (= 1.6.38-2),
 libptexenc1 (= 2022.20220321.62855-4+b1),
 libpython3-all-dev (= 3.10.6-1),
 libpython3-dev (= 3.10.6-1),
 libpython3-stdlib (= 3.10.6-1),
 libpython3.10 (= 3.10.8-3),
 libpython3.10-dev (= 3.10.8-3),
 libpython3.10-minimal (= 3.10.8-3),
 libpython3.10-stdlib (= 3.10.8-3),
 libqt5core5a (= 5.15.6+dfsg-2+rpi1+b1),
 libqt5dbus5 (= 5.15.6+dfsg-2+rpi1+b1),
 libqt5gui5 (= 5.15.6+dfsg-2+rpi1+b1),
 libqt5network5 (= 5.15.6+dfsg-2+rpi1+b1),
 libqt5printsupport5 (= 5.15.6+dfsg-2+rpi1+b1),
 libqt5svg5 (= 5.15.6-2),
 libqt5widgets5 (= 5.15.6+dfsg-2+rpi1+b1),
 librav1e0 (= 0.5.1-5),
 libreadline8 (= 8.2-1),
 libsasl2-2 (= 2.1.28+dfsg-8),
 libsasl2-modules-db (= 2.1.28+dfsg-8),
 libseccomp2 (= 2.5.4-1+rpi1),
 libselinux1 (= 3.4-1),
 libsemanage-common (= 3.4-1),
 libsemanage2 (= 3.4-1),
 libsensors-config (= 1:3.6.0-7.1),
 libsensors5 (= 1:3.6.0-7.1),
 libsepol2 (= 3.4-2),
 libsimde-dev (= 0.7.2-6),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.38.1-4),
 libsqlite3-0 (= 3.39.4-1),
 libssl3 (= 3.0.5-4),
 libstdc++-12-dev (= 12.2.0-9+rpi1),
 libstdc++6 (= 12.2.0-9+rpi1),
 libsub-override-perl (= 0.09-4),
 libsvtav1enc1 (= 1.3.0+dfsg-1),
 libsynctex2 (= 2022.20220321.62855-4+b1),
 libsystemd-shared (= 251.6-1+rpi1),
 libsystemd0 (= 251.6-1+rpi1),
 libtasn1-6 (= 4.19.0-2),
 libteckit0 (= 2.5.11+ds1-1),
 libtexlua53-5 (= 2022.20220321.62855-4+b1),
 libtexluajit2 (= 2022.20220321.62855-4+b1),
 libthai-data (= 0.1.29-1),
 libthai0 (= 0.1.29-1),
 libtiff5 (= 4.4.0-6),
 libtinfo6 (= 6.3+20220423-2),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtool (= 2.4.7-5),
 libubsan1 (= 12.2.0-9+rpi1),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 251.6-1+rpi1),
 libunistring2 (= 1.0-2),
 libuuid1 (= 2.38.1-4),
 libwacom-common (= 2.5.0-1),
 libwacom9 (= 2.5.0-1),
 libwayland-client0 (= 1.21.0-1),
 libwayland-egl1 (= 1.21.0-1),
 libwayland-server0 (= 1.21.0-1),
 libwebp7 (= 1.2.2-2+b1),
 libwxbase3.2-0 (= 3.2.1+dfsg-1),
 libwxgtk3.2-0 (= 3.2.1+dfsg-1),
 libx11-6 (= 2:1.8.1-2),
 libx11-data (= 2:1.8.1-2),
 libx11-xcb1 (= 2:1.8.1-2),
 libx265-199 (= 3.5-2),
 libxau6 (= 1:1.0.9-1),
 libxaw7 (= 2:1.0.14-1),
 libxcb-dri2-0 (= 1.15-1),
 libxcb-dri3-0 (= 1.15-1),
 libxcb-glx0 (= 1.15-1),
 libxcb-icccm4 (= 0.4.1-1.1),
 libxcb-image0 (= 0.4.0-2),
 libxcb-keysyms1 (= 0.4.0-1+b2),
 libxcb-present0 (= 1.15-1),
 libxcb-randr0 (= 1.15-1),
 libxcb-render-util0 (= 0.3.9-1+b1),
 libxcb-render0 (= 1.15-1),
 libxcb-shape0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb-sync1 (= 1.15-1),
 libxcb-util1 (= 0.4.0-1),
 libxcb-xfixes0 (= 1.15-1),
 libxcb-xinerama0 (= 1.15-1),
 libxcb-xinput0 (= 1.15-1),
 libxcb-xkb1 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxcomposite1 (= 1:0.4.5-1),
 libxcursor1 (= 1:1.2.1-1),
 libxdamage1 (= 1:1.1.5-2),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxfixes3 (= 1:6.0.0-2),
 libxi6 (= 2:1.8-1),
 libxinerama1 (= 2:1.1.4-3),
 libxkbcommon-x11-0 (= 1.4.1-1),
 libxkbcommon0 (= 1.4.1-1),
 libxml2 (= 2.9.14+dfsg-1.1),
 libxmu6 (= 2:1.1.3-3),
 libxpm4 (= 1:3.5.12-1),
 libxrandr2 (= 2:1.5.2-2),
 libxrender1 (= 1:0.9.10-1.1),
 libxshmfence1 (= 1.3-1),
 libxt6 (= 1:1.2.1-1),
 libxtst6 (= 2:1.2.3-1.1),
 libxxf86vm1 (= 1:1.1.4-1+b2),
 libxxhash0 (= 0.8.1-1),
 libyuv0 (= 0.0~git20221118.ea26d7a-2),
 libz3-4 (= 4.8.12-3),
 libzstd1 (= 1.5.2+dfsg-1),
 libzzip-0-13 (= 0.13.72+dfsg.1-1.1),
 linux-libc-dev (= 5.19.6-1+rpi1),
 login (= 1:4.12.3+dfsg1-1),
 lsb-base (= 11.4+rpi1),
 m4 (= 1.4.19-1),
 make (= 4.3-4.1),
 man-db (= 2.11.1-1),
 mawk (= 1.3.4.20200120-3.1),
 media-types (= 8.0.0),
 mount (= 2.38.1-4),
 ncurses-base (= 6.3+20220423-2),
 ncurses-bin (= 6.3+20220423-2),
 passwd (= 1:4.12.3+dfsg1-1),
 patch (= 2.7.6-7),
 perl (= 5.36.0-4),
 perl-base (= 5.36.0-4),
 perl-modules-5.36 (= 5.36.0-4),
 pinentry-curses (= 1.2.0-2),
 po-debconf (= 1.0.21+nmu1),
 poppler-data (= 0.4.11-1),
 preview-latex-style (= 12.2-1),
 python3 (= 3.10.6-1),
 python3-all (= 3.10.6-1),
 python3-all-dev (= 3.10.6-1),
 python3-dev (= 3.10.6-1),
 python3-distutils (= 3.10.8-1),
 python3-lib2to3 (= 3.10.8-1),
 python3-minimal (= 3.10.6-1),
 python3-pkg-resources (= 65.5.0-1),
 python3-setuptools (= 65.5.0-1),
 python3.10 (= 3.10.8-3),
 python3.10-dev (= 3.10.8-3),
 python3.10-minimal (= 3.10.8-3),
 raspbian-archive-keyring (= 20120528.2),
 readline-common (= 8.2-1),
 rpcsvc-proto (= 1.4.2-4),
 sed (= 4.8-1),
 sensible-utils (= 0.0.17),
 sgml-base (= 1.31),
 shared-mime-info (= 2.2-1),
 systemd (= 251.6-1+rpi1),
 systemd-sysv (= 251.6-1+rpi1),
 sysvinit-utils (= 3.05-6),
 t1utils (= 1.41-4),
 tar (= 1.34+dfsg-1),
 tex-common (= 6.18),
 texlive-base (= 2022.20220923-2),
 texlive-binaries (= 2022.20220321.62855-4+b1),
 texlive-font-utils (= 2022.20220923-3),
 texlive-fonts-recommended (= 2022.20220923-2),
 texlive-lang-greek (= 2022.20220923-1),
 texlive-latex-base (= 2022.20220923-2),
 texlive-latex-extra (= 2022.20220923-3),
 texlive-latex-recommended (= 2022.20220923-2),
 texlive-pictures (= 2022.20220923-2),
 texlive-science (= 2022.20220923-3),
 ucf (= 3.0043),
 util-linux (= 2.38.1-4),
 util-linux-extra (= 2.38.1-4),
 x11-common (= 1:7.7+23),
 xdg-utils (= 1.1.3-4.1),
 xfonts-encodings (= 1:1.0.4-2.1),
 xfonts-utils (= 1:7.7+6),
 xkb-data (= 2.35.1-1),
 xz-utils (= 5.2.5-2.1),
 zlib1g (= 1:1.2.11.dfsg-4.1),
 zlib1g-dev (= 1:1.2.11.dfsg-4.1)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1669837941"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libminimap2-dev_2.24+dfsg-3_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 122880 bytes: control archive=1340 bytes.
    1034 bytes,    23 lines      control              
     970 bytes,    17 lines      md5sums              
 Package: libminimap2-dev
 Source: minimap2
 Version: 2.24+dfsg-3
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 353
 Depends: zlib1g-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/lh3/minimap2
 Description: development headers for libminimap
  Minimap2 is a versatile sequence alignment program that aligns DNA or
  mRNA sequences against a large reference database. Typical use cases
  include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
  human genome; (2) finding overlaps between long reads with error rate up
  to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
  or Direct RNA reads against a reference genome; (4) aligning Illumina
  single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
  genome alignment between two closely related species with divergence
  below ~15%.
  .
  This package contains the C library headers for using minimap in custom tools,
  along with a static library.

drwxr-xr-x root/root         0 2022-11-30 19:52 ./
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/include/
-rw-r--r-- root/root      1811 2021-12-26 20:14 ./usr/include/bseq.h
-rw-r--r-- root/root      2124 2021-12-26 20:14 ./usr/include/kalloc.h
-rw-r--r-- root/root      4400 2021-12-26 20:14 ./usr/include/kdq.h
-rw-r--r-- root/root      3969 2021-12-26 20:14 ./usr/include/ketopt.h
-rw-r--r-- root/root     21381 2021-12-26 20:14 ./usr/include/khash.h
-rw-r--r-- root/root     16446 2021-12-26 20:14 ./usr/include/krmq.h
-rw-r--r-- root/root      8780 2021-12-26 20:14 ./usr/include/kseq.h
-rw-r--r-- root/root      5145 2021-12-26 20:14 ./usr/include/ksort.h
-rw-r--r-- root/root      8586 2021-12-26 20:14 ./usr/include/ksw2.h
-rw-r--r-- root/root       291 2021-12-26 20:14 ./usr/include/kthread.h
-rw-r--r-- root/root      3029 2021-12-26 20:14 ./usr/include/kvec.h
-rw-r--r-- root/root     13793 2021-12-26 20:14 ./usr/include/minimap.h
-rw-r--r-- root/root      6507 2021-12-26 20:14 ./usr/include/mmpriv.h
-rw-r--r-- root/root       574 2021-12-26 20:14 ./usr/include/sdust.h
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/
-rw-r--r-- root/root    242514 2022-11-30 19:52 ./usr/lib/libminimap2.a
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/libminimap2-dev/
-rw-r--r-- root/root      1566 2022-11-30 19:52 ./usr/share/doc/libminimap2-dev/changelog.Debian.gz
-rw-r--r-- root/root      3132 2022-11-30 19:52 ./usr/share/doc/libminimap2-dev/copyright


minimap2-dbgsym_2.24+dfsg-3_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 269844 bytes: control archive=540 bytes.
     382 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: minimap2-dbgsym
 Source: minimap2
 Version: 2.24+dfsg-3
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 287
 Depends: minimap2 (= 2.24+dfsg-3)
 Section: debug
 Priority: optional
 Description: debug symbols for minimap2
 Build-Ids: eb3ddd3d4b0222e0707035adeb9e67cb344ec0c1

drwxr-xr-x root/root         0 2022-11-30 19:52 ./
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root    282908 2022-11-30 19:52 ./usr/lib/debug/.build-id/eb/3ddd3d4b0222e0707035adeb9e67cb344ec0c1.debug
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-11-30 19:52 ./usr/share/doc/minimap2-dbgsym -> minimap2


minimap2_2.24+dfsg-3_armhf.deb
------------------------------

 new Debian package, version 2.0.
 size 392140 bytes: control archive=1492 bytes.
    1431 bytes,    27 lines      control              
     981 bytes,    14 lines      md5sums              
 Package: minimap2
 Version: 2.24+dfsg-3
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 572
 Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4)
 Section: science
 Priority: optional
 Homepage: https://github.com/lh3/minimap2
 Description: versatile pairwise aligner for genomic and spliced nucleotide sequences
  Minimap2 is a versatile sequence alignment program that aligns DNA or
  mRNA sequences against a large reference database. Typical use cases
  include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
  human genome; (2) finding overlaps between long reads with error rate up
  to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
  or Direct RNA reads against a reference genome; (4) aligning Illumina
  single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
  genome alignment between two closely related species with divergence
  below ~15%.
  .
  For ~10kb noisy reads sequences, minimap2 is tens of times faster than
  mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
  is more accurate on simulated long reads and produces biologically
  meaningful alignment ready for downstream analyses. For >100bp Illumina
  short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
  as accurate on simulated data. Detailed evaluations are available from
  the minimap2 paper or the preprint.

drwxr-xr-x root/root         0 2022-11-30 19:52 ./
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/bin/
-rwxr-xr-x root/root    264908 2022-11-30 19:52 ./usr/bin/minimap2
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc-base/
-rw-r--r-- root/root       553 2022-11-30 19:52 ./usr/share/doc-base/minimap2.minimap2
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/minimap2/
-rw-r--r-- root/root      1562 2022-11-30 19:52 ./usr/share/doc/minimap2/changelog.Debian.gz
-rw-r--r-- root/root      3132 2022-11-30 19:52 ./usr/share/doc/minimap2/copyright
-rw-r--r-- root/root    269223 2022-11-30 19:52 ./usr/share/doc/minimap2/minimap2.pdf
-rw-r--r-- root/root       347 2022-11-30 19:52 ./usr/share/doc/minimap2/run-unit-test
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/minimap2/test/
-rw-r--r-- root/root      5354 2021-12-26 20:14 ./usr/share/doc/minimap2/test/MT-human.fa.gz
-rw-r--r-- root/root      5367 2021-12-26 20:14 ./usr/share/doc/minimap2/test/MT-orang.fa.gz
-rw-r--r-- root/root      3540 2021-12-26 20:14 ./usr/share/doc/minimap2/test/q-inv.fa.gz
-rw-r--r-- root/root        44 2021-12-26 20:14 ./usr/share/doc/minimap2/test/q2.fa
-rw-r--r-- root/root      2525 2021-12-26 20:14 ./usr/share/doc/minimap2/test/t-inv.fa.gz
-rw-r--r-- root/root        79 2021-12-26 20:14 ./usr/share/doc/minimap2/test/t2.fa
-rw-r--r-- root/root      1095 2022-11-30 19:52 ./usr/share/doc/minimap2/test_script
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/man/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/man/man1/
-rw-r--r-- root/root      7695 2022-11-30 19:52 ./usr/share/man/man1/minimap2.1.gz


python3-mappy-dbgsym_2.24+dfsg-3_armhf.deb
------------------------------------------

 new Debian package, version 2.0.
 size 479848 bytes: control archive=548 bytes.
     397 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python3-mappy-dbgsym
 Source: minimap2
 Version: 2.24+dfsg-3
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 508
 Depends: python3-mappy (= 2.24+dfsg-3)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-mappy
 Build-Ids: 6e575754c3835e583e86ab682fd319e03db3ed3b

drwxr-xr-x root/root         0 2022-11-30 19:52 ./
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/debug/.build-id/6e/
-rw-r--r-- root/root    509092 2022-11-30 19:52 ./usr/lib/debug/.build-id/6e/575754c3835e583e86ab682fd319e03db3ed3b.debug
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-11-30 19:52 ./usr/share/doc/python3-mappy-dbgsym -> python3-mappy


python3-mappy_2.24+dfsg-3_armhf.deb
-----------------------------------

 new Debian package, version 2.0.
 size 143664 bytes: control archive=1536 bytes.
    1057 bytes,    22 lines      control              
     755 bytes,     9 lines      md5sums              
     273 bytes,    12 lines   *  postinst             #!/bin/sh
     386 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-mappy
 Source: minimap2
 Version: 2.24+dfsg-3
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 363
 Depends: libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), python3 (<< 3.11), python3 (>= 3.10~), python3:any
 Section: python
 Priority: optional
 Homepage: https://github.com/lh3/minimap2
 Description: Python3 interface minimap2
  Minimap2 is a versatile sequence alignment program that aligns DNA or
  mRNA sequences against a large reference database. Typical use cases
  include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
  human genome; (2) finding overlaps between long reads with error rate up
  to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
  or Direct RNA reads against a reference genome; (4) aligning Illumina
  single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
  genome alignment between two closely related species with divergence
  below ~15%.
  .
  This package contains the Python3 interface for using minimap2.

drwxr-xr-x root/root         0 2022-11-30 19:52 ./
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/bin/
-rwxr-xr-x root/root      1341 2022-11-30 19:52 ./usr/bin/minimap2.py
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/python3/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/lib/python3/dist-packages/mappy-2.24.egg-info/
-rw-r--r-- root/root      7111 2022-11-30 19:52 ./usr/lib/python3/dist-packages/mappy-2.24.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2022-11-30 19:52 ./usr/lib/python3/dist-packages/mappy-2.24.egg-info/dependency_links.txt
-rw-r--r-- root/root         6 2022-11-30 19:52 ./usr/lib/python3/dist-packages/mappy-2.24.egg-info/top_level.txt
-rw-r--r-- root/root    334716 2022-11-30 19:52 ./usr/lib/python3/dist-packages/mappy.cpython-310-arm-linux-gnueabihf.so
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/doc/python3-mappy/
-rw-r--r-- root/root      1563 2022-11-30 19:52 ./usr/share/doc/python3-mappy/changelog.Debian.gz
-rw-r--r-- root/root      3132 2022-11-30 19:52 ./usr/share/doc/python3-mappy/copyright
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/lintian/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       124 2022-11-30 19:52 ./usr/share/lintian/overrides/python3-mappy
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/man/
drwxr-xr-x root/root         0 2022-11-30 19:52 ./usr/share/man/man1/
-rw-r--r-- root/root       460 2022-11-30 19:52 ./usr/share/man/man1/minimap2.py.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 13860
Build-Time: 132
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2222
Job: minimap2_2.24+dfsg-3
Machine Architecture: armhf
Package: minimap2
Package-Time: 2384
Source-Version: 2.24+dfsg-3
Space: 13860
Status: successful
Version: 2.24+dfsg-3
--------------------------------------------------------------------------------
Finished at 2022-12-03T07:04:56Z
Build needed 00:39:44, 13860k disk space

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