minimap2 →
2.17+dfsg-12 →
armhf → 2020-09-17 05:57:38
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| minimap2 2.17+dfsg-12 (armhf) Thu, 17 Sep 2020 05:16:37 +0000 |
+==============================================================================+
Package: minimap2
Version: 2.17+dfsg-12
Source Version: 2.17+dfsg-12
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-4c22ca36-f77c-4886-9241-ae22bce4b8a1' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.4 MB in 27s (909 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'minimap2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/minimap2.git
Please use:
git clone https://salsa.debian.org/med-team/minimap2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 183 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main minimap2 2.17+dfsg-12 (dsc) [2268 B]
Get:2 http://172.17.0.1/private bullseye-staging/main minimap2 2.17+dfsg-12 (tar) [170 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main minimap2 2.17+dfsg-12 (diff) [10.7 kB]
Fetched 183 kB in 0s (802 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/minimap2-lqyJdB/minimap2-2.17+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/minimap2-lqyJdB' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-FnLIEi/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-FnLIEi/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-FnLIEi/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2665 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 21 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12520 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot, libsimde-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, d-shlibs, zlib1g-dev, texlive-latex-extra, texlive-science, texlive-font-utils, ghostscript, gnuplot, libsimde-dev
dpkg-deb: building package 'sbuild-build-depends-minimap2-dummy' in '/<<BUILDDIR>>/resolver-FnLIEi/apt_archive/sbuild-build-depends-minimap2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-minimap2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Sources [579 B]
Get:5 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ Packages [662 B]
Fetched 2574 B in 1s (3215 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install minimap2 build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
adwaita-icon-theme aglfn autoconf automake autopoint autotools-dev cython3
d-shlibs dbus dbus-user-session dconf-gsettings-backend dconf-service
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dmsetup dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-gfs-baskerville
fonts-gfs-porson fonts-lmodern fonts-urw-base35 gettext gettext-base
ghostscript glib-networking glib-networking-common glib-networking-services
gnuplot gnuplot-data gnuplot-qt groff-base gsettings-desktop-schemas
gtk-update-icon-cache hicolor-icon-theme intltool-debian libapache-pom-java
libapparmor1 libarchive-zip-perl libargon2-1 libatk-bridge2.0-0 libatk1.0-0
libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data
libavahi-common3 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcolord2
libcommons-logging-java libcommons-parent-java libcroco3 libcryptsetup12
libcups2 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl
libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common
libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1
libepoxy0 libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgd3
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri
libglapi-mesa libgles2 libglib2.0-0 libglvnd0 libglx-mesa0 libglx0
libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgtk-3-0
libgtk-3-common libgudev-1.0-0 libharfbuzz0b libice6 libicu67 libidn11
libijs-0.35 libinput-bin libinput10 libip4tc2 libjbig0 libjbig2dec0
libjpeg62-turbo libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common
libk5crypto3 libkeyutils1 libkmod2 libkpathsea6 libkrb5-3 libkrb5support0
liblcms2-2 libllvm10 liblua5.3-0 libmagic-mgc libmagic1 libmd4c0 libmtdev1
libnotify4 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpdfbox-java
libpipeline1 libpixman-1-0 libpng16-16 libproxy1v5 libpsl5 libptexenc1
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libqt5core5a
libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5
libqt5widgets5 librest-0.7-0 libsensors-config libsensors5 libsigsegv2
libsimde-dev libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libssl1.1
libsub-override-perl libsynctex2 libsystemd0 libteckit0 libtexlua53
libtexluajit2 libthai-data libthai0 libtiff5 libtool libuchardet0
libwacom-common libwacom2 libwayland-client0 libwayland-cursor0
libwayland-egl1 libwayland-server0 libwebp6 libwxbase3.0-0v5
libwxgtk3.0-gtk3-0v5 libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7
libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util0
libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1
libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6
libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxmu6 libxpm4
libxrandr2 libxrender1 libxshmfence1 libxt6 libxxf86vm1 libz3-4 libzzip-0-13
m4 man-db mime-support po-debconf poppler-data preview-latex-style python3
python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3.8 python3.8-dev python3.8-minimal shared-mime-info
systemd systemd-sysv systemd-timesyncd t1utils tex-common texlive-base
texlive-binaries texlive-font-utils texlive-fonts-recommended
texlive-lang-greek texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures texlive-science ucf x11-common
xdg-utils xkb-data zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make
fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc
libasprintf-dev libgettextpo-dev ghostscript-x gnuplot-doc groff colord
libavalon-framework-java libcommons-logging-java-doc
libexcalibur-logkit-java liblog4j1.2-java cups-common libgd-tools krb5-doc
krb5-user gvfs librsvg2-common liblcms2-utils qt5-image-formats-plugins
qtwayland5 lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl poppler-utils
fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic
| fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
python3-doc python3-tk python3-venv python3.8-venv python3.8-doc
binfmt-support systemd-container policykit-1 perl-tk xpdf | pdf-viewer xzdec
lcdf-typetools psutils texlive-fonts-recommended-doc texlive-latex-base-doc
python3-pygments icc-profiles libfile-which-perl
libspreadsheet-parseexcel-perl texlive-latex-extra-doc
texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex
ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex texlive-science-doc
Recommended packages:
librsvg2-common curl | wget | lynx at-spi2-core libarchive-cpio-perl
libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs fonts-droid-fallback
libgtk-3-bin krb5-locales notification-daemon publicsuffix
qttranslations5-l10n qt5-gtk-platformtheme libltdl-dev libwacom-bin
libmail-sendmail-perl libnss-systemd lmodern dvisvgm ps2eps tex-gyre tipa
texlive-plain-generic ruby | ruby-interpreter tk libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
adwaita-icon-theme aglfn autoconf automake autopoint autotools-dev cython3
d-shlibs dbus dbus-user-session dconf-gsettings-backend dconf-service
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dmsetup dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-gfs-baskerville
fonts-gfs-porson fonts-lmodern fonts-urw-base35 gettext gettext-base
ghostscript glib-networking glib-networking-common glib-networking-services
gnuplot gnuplot-data gnuplot-qt groff-base gsettings-desktop-schemas
gtk-update-icon-cache hicolor-icon-theme intltool-debian libapache-pom-java
libapparmor1 libarchive-zip-perl libargon2-1 libatk-bridge2.0-0 libatk1.0-0
libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data
libavahi-common3 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcolord2
libcommons-logging-java libcommons-parent-java libcroco3 libcryptsetup12
libcups2 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl
libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common
libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1
libepoxy0 libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgd3
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri
libglapi-mesa libgles2 libglib2.0-0 libglvnd0 libglx-mesa0 libglx0
libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgtk-3-0
libgtk-3-common libgudev-1.0-0 libharfbuzz0b libice6 libicu67 libidn11
libijs-0.35 libinput-bin libinput10 libip4tc2 libjbig0 libjbig2dec0
libjpeg62-turbo libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common
libk5crypto3 libkeyutils1 libkmod2 libkpathsea6 libkrb5-3 libkrb5support0
liblcms2-2 libllvm10 liblua5.3-0 libmagic-mgc libmagic1 libmd4c0 libmtdev1
libnotify4 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpdfbox-java
libpipeline1 libpixman-1-0 libpng16-16 libproxy1v5 libpsl5 libptexenc1
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libqt5core5a
libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5
libqt5widgets5 librest-0.7-0 libsensors-config libsensors5 libsigsegv2
libsimde-dev libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libssl1.1
libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2
libthai-data libthai0 libtiff5 libtool libuchardet0 libwacom-common
libwacom2 libwayland-client0 libwayland-cursor0 libwayland-egl1
libwayland-server0 libwebp6 libwxbase3.0-0v5 libwxgtk3.0-gtk3-0v5 libx11-6
libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0
libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0
libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0
libxcb-sync1 libxcb-util0 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0
libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6
libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0
libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6
libxxf86vm1 libz3-4 libzzip-0-13 m4 man-db mime-support po-debconf
poppler-data preview-latex-style python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8
python3.8-dev python3.8-minimal sbuild-build-depends-minimap2-dummy
shared-mime-info systemd systemd-sysv systemd-timesyncd t1utils tex-common
texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended
texlive-lang-greek texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures texlive-science ucf x11-common
xdg-utils xkb-data zlib1g-dev
The following packages will be upgraded:
libsystemd0
1 upgraded, 271 newly installed, 0 to remove and 20 not upgraded.
Need to get 282 MB/283 MB of archives.
After this operation, 876 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-FnLIEi/apt_archive ./ sbuild-build-depends-minimap2-dummy 0.invalid.0 [944 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libsystemd0 armhf 246.4-1+rpi1 [340 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libapparmor1 armhf 2.13.4-3+b1 [92.8 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf dmsetup armhf 2:1.02.171-3 [90.7 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.171-3 [133 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libjson-c5 armhf 0.15-1 [38.5 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libcryptsetup12 armhf 2:2.3.4-1 [216 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libip4tc2 armhf 1.8.5-3 [32.6 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libkmod2 armhf 27+20200310-2 [48.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf systemd-timesyncd armhf 246.4-1+rpi1 [127 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf systemd armhf 246.4-1+rpi1 [4077 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf systemd-sysv armhf 246.4-1+rpi1 [109 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.20-1+b3 [192 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf dbus armhf 1.12.20-1+b3 [215 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.0-1 [1173 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6 [578 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf shared-mime-info armhf 1.15-1 [785 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libdouble-conversion3 armhf 3.1.5-5 [38.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libqt5core5a armhf 5.14.2+dfsg-6+rpi1 [1485 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf fonts-urw-base35 all 20170801.1-3 [6333 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libdrm-common all 2.4.102-1+rpi1 [14.6 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libdrm2 armhf 2.4.102-1+rpi1 [37.7 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libglvnd0 armhf 1.3.2-1 [55.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libwayland-server0 armhf 1.18.0-2~exp1.1 [28.0 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libgbm1 armhf 20.1.7-1+rpi1 [72.1 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglapi-mesa armhf 20.1.7-1+rpi1 [80.3 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libwayland-client0 armhf 1.18.0-2~exp1.1 [22.1 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libx11-xcb1 armhf 2:1.6.10-3 [203 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri2-0 armhf 1.14-2 [103 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri3-0 armhf 1.14-2 [102 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libxcb-present0 armhf 1.14-2 [101 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libxcb-sync1 armhf 1.14-2 [104 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xfixes0 armhf 1.14-2 [105 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libegl-mesa0 armhf 20.1.7-1+rpi1 [125 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libegl1 armhf 1.3.2-1 [28.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libgles2 armhf 1.3.2-1 [20.2 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.7-1 [1366 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libevdev2 armhf 1.9.1+dfsg-1+rpi1 [27.7 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libmtdev1 armhf 1.1.6-1 [22.0 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libgudev-1.0-0 armhf 233-1 [11.9 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libwacom-common all 1.5-1 [47.8 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libwacom2 armhf 1.5-1 [18.6 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libinput-bin armhf 1.16.1-1 [21.6 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libinput10 armhf 1.16.1-1 [99.9 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libmd4c0 armhf 0.4.5-1 [38.3 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libqt5dbus5 armhf 5.14.2+dfsg-6+rpi1 [208 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libqt5network5 armhf 5.14.2+dfsg-6+rpi1 [587 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.10-3 [311 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.10-3 [704 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libxcb-util0 armhf 0.3.8-3+b2 [21.9 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libxcb-image0 armhf 0.4.0-1+b2 [23.3 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libxcb-randr0 armhf 1.14-2 [112 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shape0 armhf 1.14-2 [102 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xinerama0 armhf 1.14-2 [101 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xinput0 armhf 1.14-2 [123 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xkb1 armhf 1.14-2 [122 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf xkb-data all 2.29-2 [655 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libxkbcommon0 armhf 0.10.0-1 [111 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libxkbcommon-x11-0 armhf 0.10.0-1 [38.2 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libqt5gui5 armhf 5.14.2+dfsg-6+rpi1 [2453 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libqt5widgets5 armhf 5.14.2+dfsg-6+rpi1 [2051 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libqt5svg5 armhf 5.14.2-2 [114 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf poppler-data all 0.4.9-2 [1473 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.5-2 [752 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.5-2 [1628 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.5-2 [1677 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.5-2 [420 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf tex-common all 6.15 [53.5 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libpam-systemd armhf 246.4-1+rpi1 [255 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-common all 2.40.0+dfsg-5 [317 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.40.0+dfsg-5 [158 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf gtk-update-icon-cache armhf 3.24.23-1 [85.0 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf adwaita-icon-theme all 3.36.1-2 [10.9 MB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-1 [1318 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.94 [17.7 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf dbus-user-session armhf 1.12.20-1+b3 [96.2 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libdconf1 armhf 0.36.0-1 [38.7 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf dconf-service armhf 0.36.0-1 [34.4 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf dconf-gsettings-backend armhf 0.36.0-1 [26.0 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.5-1 [78.4 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.5-1 [145 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf fonts-gfs-baskerville all 1.1-6 [43.7 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf fonts-gfs-porson all 1.1-7 [33.8 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf fonts-lmodern all 2.004.5-6 [4539 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libgs9-common all 9.52.1~dfsg-1 [732 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.8-3+b2 [127 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.8-3+b2 [55.3 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.8-3+b2 [58.0 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.3-3+rpi1 [310 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libidn11 armhf 1.33-2.4 [113 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libijs-0.35 armhf 0.35-15 [14.7 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libjbig2dec0 armhf 0.19-1 [58.1 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libopenjp2-7 armhf 2.3.1-1 [140 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libgs9 armhf 9.52.1~dfsg-1 [1870 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf ghostscript armhf 9.52.1~dfsg-1 [96.1 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libproxy1v5 armhf 0.4.15-13 [51.4 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf glib-networking-common all 2.64.3-2 [65.9 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf glib-networking-services armhf 2.64.3-2 [16.7 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf gsettings-desktop-schemas all 3.36.1-1 [580 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf glib-networking armhf 2.64.3-2 [60.0 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf gnuplot-data all 5.2.8+dfsg1-2 [183 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf libgd3 armhf 2.3.0-2 [116 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf liblua5.3-0 armhf 5.3.3-1.1+b1 [95.0 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b3 [36.4 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.46.1-1 [171 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.46.1-1 [54.8 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.46.1-1 [45.9 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf libqt5printsupport5 armhf 5.14.2+dfsg-6+rpi1 [206 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf libwxbase3.0-0v5 armhf 3.0.5.1+dfsg-2 [918 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf libxcb-glx0 armhf 1.14-2 [117 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf libxdamage1 armhf 1:1.1.5-2 [15.2 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf libxfixes3 armhf 1:5.0.3-2 [20.7 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf libdrm-amdgpu1 armhf 2.4.102-1+rpi1 [27.2 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf libdrm-nouveau2 armhf 2.4.102-1+rpi1 [24.9 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf libdrm-radeon1 armhf 2.4.102-1+rpi1 [29.2 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf libz3-4 armhf 4.8.8-1 [5913 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf libllvm10 armhf 1:10.0.1-5+rpi1 [14.6 MB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf libsensors-config all 1:3.6.0-2 [32.0 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf libsensors5 armhf 1:3.6.0-2 [50.2 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dri armhf 20.1.7-1+rpi1 [5764 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf libglx-mesa0 armhf 20.1.7-1+rpi1 [171 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf libglx0 armhf 1.3.2-1 [25.8 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf libgl1 armhf 1.3.2-1 [106 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf libatk1.0-data all 2.36.0-2 [149 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf libatk1.0-0 armhf 2.36.0-2 [44.2 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf libatspi2.0-0 armhf 2.38.0-2 [62.1 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf libatk-bridge2.0-0 armhf 2.38.0-1 [55.8 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf libcairo-gobject2 armhf 1.16.0-4 [123 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf libcolord2 armhf 1.4.4-2 [121 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf libepoxy0 armhf 1.5.4-1 [172 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf libjson-glib-1.0-common all 1.6.0-1 [55.5 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf libjson-glib-1.0-0 armhf 1.6.0-1 [56.5 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf libsoup2.4-1 armhf 2.70.0-1 [236 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf libsoup-gnome2.4-1 armhf 2.70.0-1 [21.2 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf librest-0.7-0 armhf 0.8.1-1 [27.8 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf libwayland-cursor0 armhf 1.18.0-2~exp1.1 [13.5 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf libwayland-egl1 armhf 1.18.0-2~exp1.1 [8232 B]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf libxcomposite1 armhf 1:0.4.5-1 [16.2 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf libxcursor1 armhf 1:1.2.0-2 [34.2 kB]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.10-1 [77.9 kB]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf libxinerama1 armhf 2:1.1.4-2 [17.3 kB]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf libxrandr2 armhf 2:1.5.1-1 [34.5 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf libgtk-3-common all 3.24.23-1 [3731 kB]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf libgtk-3-0 armhf 3.24.23-1 [2272 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf libnotify4 armhf 0.7.9-1 [21.4 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf libwxgtk3.0-gtk3-0v5 armhf 3.0.5.1+dfsg-2 [3650 kB]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf gnuplot-qt armhf 5.2.8+dfsg1-2 [992 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf gnuplot all 5.2.8+dfsg1-2 [130 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf libapache-pom-java all 18-1 [4676 B]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf libcommons-parent-java all 43-1 [10.8 kB]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf libcommons-logging-java all 1.2-2 [62.2 kB]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf libfontbox-java all 1:1.8.16-2 [211 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf libkpathsea6 armhf 2020.20200327.54578-4+b1 [163 kB]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf libptexenc1 armhf 2020.20200327.54578-4+b1 [60.9 kB]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.5-2 [1363 kB]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.5-2 [3053 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:243 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-3 [1068 B]
Get:244 http://172.17.0.1/private bullseye-staging/main armhf libsimde-dev all 0.6.0-3 [213 kB]
Get:245 http://172.17.0.1/private bullseye-staging/main armhf libsynctex2 armhf 2020.20200327.54578-4+b1 [69.8 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf libteckit0 armhf 2.5.10+ds1-3 [252 kB]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf libtexlua53 armhf 2020.20200327.54578-4+b1 [101 kB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf libtexluajit2 armhf 2020.20200327.54578-4+b1 [207 kB]
Get:249 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:250 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:251 http://172.17.0.1/private bullseye-staging/main armhf libxaw7 armhf 2:1.0.13-1+b2 [163 kB]
Get:252 http://172.17.0.1/private bullseye-staging/main armhf libzzip-0-13 armhf 0.13.62-3.2 [51.6 kB]
Get:253 http://172.17.0.1/private bullseye-staging/main armhf preview-latex-style all 12.2-1 [201 kB]
Get:254 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:255 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:256 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.5-2 [515 kB]
Get:257 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:258 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-3 [1064 B]
Get:259 http://172.17.0.1/private bullseye-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:260 http://172.17.0.1/private bullseye-staging/main armhf texlive-binaries armhf 2020.20200327.54578-4+b1 [6860 kB]
Get:261 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:262 http://172.17.0.1/private bullseye-staging/main armhf texlive-base all 2020.20200804-2 [21.5 MB]
Get:263 http://172.17.0.1/private bullseye-staging/main armhf texlive-font-utils all 2020.20200804-3 [1771 kB]
Get:264 http://172.17.0.1/private bullseye-staging/main armhf texlive-fonts-recommended all 2020.20200804-2 [5003 kB]
Get:265 http://172.17.0.1/private bullseye-staging/main armhf texlive-lang-greek all 2020.20200804-1 [77.0 MB]
Get:266 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-base all 2020.20200804-2 [1066 kB]
Get:267 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-recommended all 2020.20200804-2 [14.5 MB]
Get:268 http://172.17.0.1/private bullseye-staging/main armhf texlive-pictures all 2020.20200804-2 [4687 kB]
Get:269 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-extra all 2020.20200804-3 [13.2 MB]
Get:270 http://172.17.0.1/private bullseye-staging/main armhf texlive-science all 2020.20200804-3 [3343 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libargon2-1:armhf (0~20171227-0.2) ...
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Setting up libdevmapper1.02.1:armhf (2:1.02.171-3) ...
Setting up libcryptsetup12:armhf (2:2.3.4-1) ...
Setting up systemd-timesyncd (246.4-1+rpi1) ...
Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service -> /lib/systemd/system/systemd-timesyncd.service.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service -> /lib/systemd/system/systemd-timesyncd.service.
Setting up systemd (246.4-1+rpi1) ...
Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service.
Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service.
Initializing machine ID from random generator.
Setting up dmsetup (2:1.02.171-3) ...
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Setting up libatk1.0-data (2.36.0-2) ...
Setting up fonts-gfs-baskerville (1.1-6) ...
Setting up libxshmfence1:armhf (1.3-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up liblua5.3-0:armhf (5.3.3-1.1+b1) ...
Setting up libpam-systemd:armhf (246.4-1+rpi1) ...
Setting up libmd4c0:armhf (0.4.5-1) ...
Setting up fonts-lmodern (2.004.5-6) ...
Setting up libopenjp2-7:armhf (2.3.1-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-3) ...
Setting up libwxbase3.0-0v5:armhf (3.0.5.1+dfsg-2) ...
Setting up libjson-glib-1.0-common (1.6.0-1) ...
Setting up libatk1.0-0:armhf (2.36.0-2) ...
Setting up libkrb5-3:armhf (1.17-10+b3) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up libwayland-egl1:armhf (1.18.0-2~exp1.1) ...
Setting up glib-networking-common (2.64.3-2) ...
Setting up libpython3.8-stdlib:armhf (3.8.5-2) ...
Setting up python3.8 (3.8.5-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libdrm-common (2.4.102-1+rpi1) ...
Setting up libelf1:armhf (0.180-1) ...
Setting up libevdev2:armhf (1.9.1+dfsg-1+rpi1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6) ...
Setting up xdg-utils (1.1.3-2) ...
Setting up libgudev-1.0-0:armhf (233-1) ...
Setting up libsynctex2:armhf (2020.20200327.54578-4+b1) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libwacom-common (1.5-1) ...
Setting up libxkbcommon0:armhf (0.10.0-1) ...
Setting up libwayland-client0:armhf (1.18.0-2~exp1.1) ...
Setting up libgs9-common (9.52.1~dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up glib-networking-services (2.64.3-2) ...
Setting up gnuplot-data (5.2.8+dfsg1-2) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-2) ...
Setting up libxcb-xfixes0:armhf (1.14-2) ...
Setting up libpdfbox-java (1:1.8.16-2) ...
Setting up libxcb-xinput0:armhf (1.14-2) ...
Setting up libtool (2.4.6-14) ...
Setting up libxcb-render0:armhf (1.14-2) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libxcb-glx0:armhf (1.14-2) ...
Setting up libedit2:armhf (3.1-20191231-1) ...
Setting up libcommons-parent-java (43-1) ...
Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ...
Setting up libxcb-shape0:armhf (1.14-2) ...
Setting up libavahi-common3:armhf (0.8-3+b2) ...
Setting up libcommons-logging-java (1.2-2) ...
Setting up m4 (1.4.18-4) ...
Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ...
Setting up python3 (3.8.2-3) ...
Setting up libxcb-shm0:armhf (1.14-2) ...
Setting up libxcb-icccm4:armhf (0.4.1-1.1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libxcb-util0:armhf (0.3.8-3+b2) ...
Setting up libjson-glib-1.0-0:armhf (1.6.0-1) ...
Setting up libxcb-xkb1:armhf (1.14-2) ...
Setting up libxcb-image0:armhf (0.4.0-1+b2) ...
Setting up libllvm10:armhf (1:10.0.1-5+rpi1) ...
Setting up libxcb-present0:armhf (1.14-2) ...
Setting up tex-common (6.15) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libthai0:armhf (0.1.28-3) ...
Setting up dbus-user-session (1.12.20-1+b3) ...
Setting up libxcb-xinerama0:armhf (1.14-2) ...
Setting up libptexenc1:armhf (2020.20200327.54578-4+b1) ...
Setting up libfreetype6:armhf (2.10.2+dfsg-3) ...
Setting up libxcb-sync1:armhf (1.14-2) ...
Setting up libpython3.8:armhf (3.8.5-2) ...
Setting up shared-mime-info (1.15-1) ...
Setting up libxkbcommon-x11-0:armhf (0.10.0-1) ...
Setting up libgssapi-krb5-2:armhf (1.17-10+b3) ...
Setting up cython3 (0.29.21-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libqt5core5a:armhf (5.14.2+dfsg-6+rpi1) ...
Setting up autoconf (2.69-11.1) ...
Setting up libxcb-dri2-0:armhf (1.14-2) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up libdrm2:armhf (2.4.102-1+rpi1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libqt5dbus5:armhf (5.14.2+dfsg-6+rpi1) ...
Setting up libwayland-cursor0:armhf (1.18.0-2~exp1.1) ...
Setting up libxcb-randr0:armhf (1.14-2) ...
Setting up libx11-6:armhf (2:1.6.10-3) ...
Setting up libharfbuzz0b:armhf (2.6.7-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up python3-lib2to3 (3.8.5-1) ...
Setting up libwacom2:armhf (1.5-1) ...
Setting up libxcomposite1:armhf (1:0.4.5-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libavahi-client3:armhf (0.8-3+b2) ...
Setting up libdrm-amdgpu1:armhf (2.4.102-1+rpi1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.5-1) ...
Setting up dh-python (4.20200315) ...
Setting up libxcb-dri3-0:armhf (1.14-2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libdrm-nouveau2:armhf (2.4.102-1+rpi1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libxdamage1:armhf (1:1.1.5-2) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libgbm1:armhf (20.1.7-1+rpi1) ...
Setting up libdrm-radeon1:armhf (2.4.102-1+rpi1) ...
Setting up preview-latex-style (12.2-1) ...
Setting up libpango-1.0-0:armhf (1.46.1-1) ...
Setting up libgl1-mesa-dri:armhf (20.1.7-1+rpi1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up python3-all (3.8.2-3) ...
Setting up dconf-service (0.36.0-1) ...
Setting up libatspi2.0-0:armhf (2.38.0-2) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libqt5network5:armhf (5.14.2+dfsg-6+rpi1) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libinput-bin (1.16.1-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libatk-bridge2.0-0:armhf (2.38.0-1) ...
Setting up libegl-mesa0:armhf (20.1.7-1+rpi1) ...
Setting up libpython3.8-dev:armhf (3.8.5-2) ...
Setting up libxfixes3:armhf (1:5.0.3-2) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.40.0+dfsg-5) ...
Setting up libxinerama1:armhf (2:1.1.4-2) ...
Setting up libgd3:armhf (2.3.0-2) ...
Setting up libxrandr2:armhf (2:1.5.1-1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up python3.8-dev (3.8.5-2) ...
Setting up libcups2:armhf (2.3.3-3+rpi1) ...
Setting up libegl1:armhf (1.3.2-1) ...
Setting up libcairo-gobject2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.46.1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.46.1-1) ...
Setting up libinput10:armhf (1.16.1-1) ...
Setting up gtk-update-icon-cache (3.24.23-1) ...
Setting up libxmu6:armhf (2:1.1.2-2+b3) ...
Setting up libglx-mesa0:armhf (20.1.7-1+rpi1) ...
Setting up libpython3-dev:armhf (3.8.2-3) ...
Setting up libgs9:armhf (9.52.1~dfsg-1) ...
Setting up libxi6:armhf (2:1.7.10-1) ...
Setting up libglx0:armhf (1.3.2-1) ...
Setting up dconf-gsettings-backend:armhf (0.36.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libxcursor1:armhf (1:1.2.0-2) ...
Setting up libqt5gui5:armhf (5.14.2+dfsg-6+rpi1) ...
Setting up libqt5widgets5:armhf (5.14.2+dfsg-6+rpi1) ...
Setting up libxaw7:armhf (2:1.0.13-1+b2) ...
Setting up ghostscript (9.52.1~dfsg-1) ...
Setting up libqt5printsupport5:armhf (5.14.2+dfsg-6+rpi1) ...
Setting up libgl1:armhf (1.3.2-1) ...
Setting up adwaita-icon-theme (3.36.1-2) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up libpython3-all-dev:armhf (3.8.2-3) ...
Setting up libnotify4:armhf (0.7.9-1) ...
Setting up python3-dev (3.8.2-3) ...
Setting up texlive-binaries (2020.20200327.54578-4+b1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up texlive-base (2020.20200804-2) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
Setting up libgtk-3-common (3.24.23-1) ...
Setting up python3-all-dev (3.8.2-3) ...
Setting up gsettings-desktop-schemas (3.36.1-1) ...
Setting up libqt5svg5:armhf (5.14.2-2) ...
Setting up texlive-lang-greek (2020.20200804-1) ...
Setting up texlive-font-utils (2020.20200804-3) ...
Setting up texlive-latex-base (2020.20200804-2) ...
Setting up texlive-latex-recommended (2020.20200804-2) ...
Setting up texlive-pictures (2020.20200804-2) ...
Setting up texlive-fonts-recommended (2020.20200804-2) ...
Setting up glib-networking:armhf (2.64.3-2) ...
Setting up libsoup2.4-1:armhf (2.70.0-1) ...
Setting up texlive-science (2020.20200804-3) ...
Setting up texlive-latex-extra (2020.20200804-3) ...
Setting up libsoup-gnome2.4-1:armhf (2.70.0-1) ...
Setting up librest-0.7-0:armhf (0.8.1-1) ...
Setting up libgtk-3-0:armhf (3.24.23-1) ...
Setting up libwxgtk3.0-gtk3-0v5:armhf (3.0.5.1+dfsg-2) ...
Setting up gnuplot-qt (5.2.8+dfsg1-2) ...
update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode
Setting up gnuplot (5.2.8+dfsg1-2) ...
Setting up debhelper (13.2.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-minimap2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
Processing triggers for systemd (246.4-1+rpi1) ...
Processing triggers for tex-common (6.15) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-5+rpi1 gcc-10_10.2.0-5+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 adwaita-icon-theme_3.36.1-2 aglfn_1.7+git20191031.4036a9c-2 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-2+rpi1 binutils-arm-linux-gnueabihf_2.35-2+rpi1 binutils-common_2.35-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.2.0-5+rpi1 cython3_0.29.21-1 d-shlibs_0.94 dash_0.5.10.2-7 dbus_1.12.20-1+b3 dbus-user-session_1.12.20-1+b3 dconf-gsettings-backend_0.36.0-1 dconf-service_0.36.0-1 debconf_1.5.74 debhelper_13.2.1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dmsetup_2:1.02.171-3 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 fonts-gfs-baskerville_1.1-6 fonts-gfs-porson_1.1-7 fonts-lmodern_2.004.5-6 fonts-urw-base35_20170801.1-3 g++_4:10.1.0-1+rpi1 g++-10_10.2.0-5+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.2.0-5+rpi1 gcc-10-base_10.2.0-5+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 ghostscript_9.52.1~dfsg-1 glib-networking_2.64.3-2 glib-networking-common_2.64.3-2 glib-networking-services_2.64.3-2 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gnuplot_5.2.8+dfsg1-2 gnuplot-data_5.2.8+dfsg1-2 gnuplot-qt_5.2.8+dfsg1-2 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gsettings-desktop-schemas_3.36.1-1 gtk-update-icon-cache_3.24.23-1 gzip_1.10-2 hicolor-icon-theme_0.17-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libapache-pom-java_18-1 libapparmor1_2.13.4-3+b1 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan6_10.2.0-5+rpi1 libassuan0_2.5.3-7.1 libatk-bridge2.0-0_2.38.0-1 libatk1.0-0_2.36.0-2 libatk1.0-data_2.36.0-2 libatomic1_10.2.0-5+rpi1 libatspi2.0-0_2.38.0-2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libavahi-client3_0.8-3+b2 libavahi-common-data_0.8-3+b2 libavahi-common3_0.8-3+b2 libbinutils_2.35-2+rpi1 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-6+b1 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcairo-gobject2_1.16.0-4 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcap2-bin_1:2.43-1 libcc1-0_10.2.0-5+rpi1 libcolord2_1.4.4-2 libcom-err2_1.45.6-1 libcommons-logging-java_1.2-2 libcommons-parent-java_43-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libcryptsetup12_2:2.3.4-1 libctf-nobfd0_2.35-2+rpi1 libctf0_2.35-2+rpi1 libcups2_2.3.3-3+rpi1 libcwidget4_0.5.18-5 libdatrie1_0.2.12-3+b3 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.20-1+b3 libdconf1_0.36.0-1 libdebconfclient0_0.253 libdebhelper-perl_13.2.1 libdevmapper1.02.1_2:1.02.171-3 libdouble-conversion3_3.1.5-5 libdpkg-perl_1.20.5+rpi1 libdrm-amdgpu1_2.4.102-1+rpi1 libdrm-common_2.4.102-1+rpi1 libdrm-nouveau2_2.4.102-1+rpi1 libdrm-radeon1_2.4.102-1+rpi1 libdrm2_2.4.102-1+rpi1 libedit2_3.1-20191231-1 libegl-mesa0_20.1.7-1+rpi1 libegl1_1.3.2-1 libelf1_0.180-1 libepoxy0_1.5.4-1 libevdev2_1.9.1+dfsg-1+rpi1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libfontbox-java_1:1.8.16-2 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-3 libfribidi0_1.0.8-2 libgbm1_20.1.7-1+rpi1 libgcc-10-dev_10.2.0-5+rpi1 libgcc-s1_10.2.0-5+rpi1 libgcrypt20_1.8.6-2 libgd3_2.3.0-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgdk-pixbuf2.0-0_2.40.0+dfsg-5 libgdk-pixbuf2.0-common_2.40.0+dfsg-5 libgl1_1.3.2-1 libgl1-mesa-dri_20.1.7-1+rpi1 libglapi-mesa_20.1.7-1+rpi1 libgles2_1.3.2-1 libglib2.0-0_2.66.0-1 libglvnd0_1.3.2-1 libglx-mesa0_20.1.7-1+rpi1 libglx0_1.3.2-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-5+rpi1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgs9_9.52.1~dfsg-1 libgs9-common_9.52.1~dfsg-1 libgssapi-krb5-2_1.17-10+b3 libgtk-3-0_3.24.23-1 libgtk-3-common_3.24.23-1 libgudev-1.0-0_233-1 libharfbuzz0b_2.6.7-1 libhogweed6_3.6-2 libice6_2:1.0.9-2 libicu67_67.1-4 libidn11_1.33-2.4 libidn2-0_2.3.0-1 libijs-0.35_0.35-15 libinput-bin_1.16.1-1 libinput10_1.16.1-1 libip4tc2_1.8.5-3 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjbig2dec0_0.19-1 libjpeg62-turbo_1:2.0.5-1.1 libjson-c5_0.15-1 libjson-glib-1.0-0_1.6.0-1 libjson-glib-1.0-common_1.6.0-1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkmod2_27+20200310-2 libkpathsea6_2020.20200327.54578-4+b1 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblcms2-2_2.9-4 libldap-2.4-2_2.4.51+dfsg-1 libldap-common_2.4.51+dfsg-1 libllvm10_1:10.0.1-5+rpi1 liblua5.3-0_5.3.3-1.1+b1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmd4c0_0.4.5-1 libmount1_2.36-3 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libmtdev1_1.1.6-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnotify4_0.7.9-1 libnpth0_1.6-2 libopenjp2-7_2.3.1-1 libp11-kit0_0.23.21-2 libpam-cap_1:2.43-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam-systemd_246.4-1+rpi1 libpam0g_1.3.1-5 libpango-1.0-0_1.46.1-1 libpangocairo-1.0-0_1.46.1-1 libpangoft2-1.0-0_1.46.1-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-16-0_10.34-7 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libpdfbox-java_1:1.8.16-2 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpixman-1-0_0.36.0-1 libpng16-16_1.6.37-2 libproxy1v5_0.4.15-13 libpsl5_0.21.0-1.1 libptexenc1_2020.20200327.54578-4+b1 libpython3-all-dev_3.8.2-3 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.8_3.8.5-2 libpython3.8-dev_3.8.5-2 libpython3.8-minimal_3.8.5-2 libpython3.8-stdlib_3.8.5-2 libqt5core5a_5.14.2+dfsg-6+rpi1 libqt5dbus5_5.14.2+dfsg-6+rpi1 libqt5gui5_5.14.2+dfsg-6+rpi1 libqt5network5_5.14.2+dfsg-6+rpi1 libqt5printsupport5_5.14.2+dfsg-6+rpi1 libqt5svg5_5.14.2-2 libqt5widgets5_5.14.2+dfsg-6+rpi1 libreadline8_8.0-4 librest-0.7-0_0.8.1-1 librust-rand-core-dev_0.5.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsensors-config_1:3.6.0-2 libsensors5_1:3.6.0-2 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsimde-dev_0.6.0-3 libsm6_2:1.2.3-1 libsmartcols1_2.36-3 libsoup-gnome2.4-1_2.70.0-1 libsoup2.4-1_2.70.0-1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 libsub-override-perl_0.09-2 libsynctex2_2020.20200327.54578-4+b1 libsystemd0_246.4-1+rpi1 libtasn1-6_4.16.0-2 libteckit0_2.5.10+ds1-3 libtexlua53_2020.20200327.54578-4+b1 libtexluajit2_2020.20200327.54578-4+b1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_246.2-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libwacom-common_1.5-1 libwacom2_1.5-1 libwayland-client0_1.18.0-2~exp1.1 libwayland-cursor0_1.18.0-2~exp1.1 libwayland-egl1_1.18.0-2~exp1.1 libwayland-server0_1.18.0-2~exp1.1 libwebp6_0.6.1-2 libwxbase3.0-0v5_3.0.5.1+dfsg-2 libwxgtk3.0-gtk3-0v5_3.0.5.1+dfsg-2 libx11-6_2:1.6.10-3 libx11-data_2:1.6.10-3 libx11-xcb1_2:1.6.10-3 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-dri2-0_1.14-2 libxcb-dri3-0_1.14-2 libxcb-glx0_1.14-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1+b2 libxcb-keysyms1_0.4.0-1+b2 libxcb-present0_1.14-2 libxcb-randr0_1.14-2 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.14-2 libxcb-shape0_1.14-2 libxcb-shm0_1.14-2 libxcb-sync1_1.14-2 libxcb-util0_0.3.8-3+b2 libxcb-xfixes0_1.14-2 libxcb-xinerama0_1.14-2 libxcb-xinput0_1.14-2 libxcb-xkb1_1.14-2 libxcb1_1.14-2 libxcomposite1_1:0.4.5-1 libxcursor1_1:1.2.0-2 libxdamage1_1:1.1.5-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-2 libxi6_2:1.7.10-1 libxinerama1_2:1.1.4-2 libxkbcommon-x11-0_0.10.0-1 libxkbcommon0_0.10.0-1 libxml2_2.9.10+dfsg-6 libxmu6_2:1.1.2-2+b3 libxpm4_1:3.5.12-1 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxt6_1:1.2.0-1 libxxf86vm1_1:1.1.4-1+b2 libz3-4_4.8.8-1 libzstd1_1.4.5+dfsg-4+rpi1 libzzip-0-13_0.13.62-3.2 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 poppler-data_0.4.9-2 preview-latex-style_12.2-1 python3_3.8.2-3 python3-all_3.8.2-3 python3-all-dev_3.8.2-3 python3-dev_3.8.2-3 python3-distutils_3.8.5-1 python3-lib2to3_3.8.5-1 python3-minimal_3.8.2-3 python3.8_3.8.5-2 python3.8-dev_3.8.5-2 python3.8-minimal_3.8.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-minimap2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 shared-mime-info_1.15-1 systemd_246.4-1+rpi1 systemd-sysv_246.4-1+rpi1 systemd-timesyncd_246.4-1+rpi1 sysvinit-utils_2.96-4 t1utils_1.41-4 tar_1.30+dfsg-7 tex-common_6.15 texlive-base_2020.20200804-2 texlive-binaries_2020.20200327.54578-4+b1 texlive-font-utils_2020.20200804-3 texlive-fonts-recommended_2020.20200804-2 texlive-lang-greek_2020.20200804-1 texlive-latex-base_2020.20200804-2 texlive-latex-extra_2020.20200804-3 texlive-latex-recommended_2020.20200804-2 texlive-pictures_2020.20200804-2 texlive-science_2020.20200804-3 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-3 x11-common_1:7.7+20 xdg-utils_1.1.3-2 xkb-data_2.29-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.UPdX2TCN/trustedkeys.kbx': General error
gpgv: Signature made Tue Sep 15 08:57:53 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./minimap2_2.17+dfsg-12.dsc
dpkg-source: info: extracting minimap2 in /<<BUILDDIR>>/minimap2-2.17+dfsg
dpkg-source: info: unpacking minimap2_2.17+dfsg.orig.tar.xz
dpkg-source: info: unpacking minimap2_2.17+dfsg-12.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying do_not_use_natbib.bst.patch
dpkg-source: info: applying simde
dpkg-source: info: applying ar.patch
dpkg-source: info: applying link_mappy_to_libminimap.patch
dpkg-source: info: applying python-sse4-arch.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-4c22ca36-f77c-4886-9241-ae22bce4b8a1
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package minimap2
dpkg-buildpackage: info: source version 2.17+dfsg-12
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh clean --with python3
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
rm -fr gmon.out *.o a.out minimap2 sdust minimap2-lite *~ *.a *.dSYM build dist mappy*.so mappy.c python/mappy.c mappy.egg*
make[2]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
rm -f MT-human.mmi
rm -f tex/minimap2.aux tex/minimap2.bbl tex/minimap2.blg tex/minimap2.log tex/minimap2.out tex/minimap2.pdf
rm -f libminimap2.a
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
dh_clean
debian/rules binary-arch
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh binary-arch --with python3
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh_auto_build --
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC main.c -o main.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC kthread.c -o kthread.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC kalloc.c -o kalloc.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC misc.c -o misc.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC bseq.c -o bseq.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC sketch.c -o sketch.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC sdust.c -o sdust.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC options.c -o options.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC index.c -o index.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC chain.c -o chain.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC align.c -o align.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC hit.c -o hit.o
index.c: In function 'mm_idx_load':
index.c:495:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
495 | fread(&l, 1, 1, fp);
| ^~~~~~~~~~~~~~~~~~~
index.c:498:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
498 | fread(s->name, 1, l, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:501:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
501 | fread(&s->len, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:510:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
510 | fread(&b->n, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:512:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
512 | fread(b->p, 8, b->n, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
index.c:513:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
513 | fread(&size, 4, 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~
index.c:520:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
520 | fread(x, 8, 2, fp);
| ^~~~~~~~~~~~~~~~~~
index.c:528:3: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
528 | fread(mi->S, 4, (sum_len + 7) / 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hit.c: In function 'mm_gen_regs':
hit.c:74:18: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
74 | r = (mm_reg1_t*)calloc(n_u, sizeof(mm_reg1_t));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from hit.c:2:
/usr/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here
542 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC map.c -o map.o
map.c: In function 'mm_map_frag':
map.c:380:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
| ~~^ ~~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
map.c:380:49: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
| ~~^ ~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
map.c:380:61: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
| ~~^ ~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC format.c -o format.o
format.c: In function 'mm_write_sam3':
format.c:391:36: warning: variable 'this_rev' set but not used [-Wunused-but-set-variable]
391 | int this_rid = -1, this_pos = -1, this_rev = 0;
| ^~~~~~~~
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC pe.c -o pe.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC esterr.c -o esterr.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC splitidx.c -o splitidx.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_ll_sse.c -o ksw2_ll_sse.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_extz2_sse.c -o ksw2_extz2_sse.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_extd2_sse.c -o ksw2_extd2_sse.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC ksw2_exts2_sse.c -o ksw2_exts2_sse.o
rm -f libminimap2.a
ar csrD libminimap2.a kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o chain.o align.o hit.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o ksw2_extz2_sse.o ksw2_extd2_sse.o ksw2_exts2_sse.o
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -g -Wall -O2 -Wc++-compat main.o -o minimap2 -L. -lminimap2 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
cd tex && make
make[2]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg/tex'
gnuplot roc.gp
epstopdf --outfile roc-color.pdf roc-color.eps
pdflatex minimap2; bibtex minimap2; pdflatex minimap2; pdflatex minimap2;
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\OT1/ptm/m/n/9 releasing their masterpiece and insightful notes before formal
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\OT1/ptm/m/n/9 searches six times over other SIMD implementations.
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\OT1/ptm/m/n/9 of a human genome with ultra-long reads. \OT1/ptm/m/it/9 bioRxi
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Output written on minimap2.pdf (6 pages, 253325 bytes).
Transcript written on minimap2.log.
make[2]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg/tex'
dh_auto_build --buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_ext
cythoning python/mappy.pyx to python/mappy.c
building 'mappy' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/python
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c python/mappy.c -o build/temp.linux-armhf-3.8/python/mappy.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c align.c -o build/temp.linux-armhf-3.8/align.o -DHAVE_KALLOC
align.c: In function 'mm_get_hplen_back':
align.c:346:29: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
346 | if (mm_seq4_get(mi->S, i) != c) break;
| ^~
align.c: In function 'mm_seed_ext_score':
align.c:533:49: warning: operand of '?:' changes signedness from 'int' to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare]
533 | re = re + ext_len < (int32_t)mi->seq[rid].len? re + ext_len : mi->seq[rid].len;
| ^~~~~~~~~~~~
align.c: In function 'mm_align1':
align.c:620:45: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare]
620 | re0 = re + l < (int32_t)mi->seq[rid].len? re + l : mi->seq[rid].len;
| ^~~~~~
align.c:672:44: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare]
672 | l = l < (int32_t)mi->seq[rid].len - re? l : mi->seq[rid].len - re;
| ^
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c bseq.c -o build/temp.linux-armhf-3.8/bseq.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c chain.c -o build/temp.linux-armhf-3.8/chain.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c format.c -o build/temp.linux-armhf-3.8/format.o -DHAVE_KALLOC
format.c: In function 'mm_event_identity':
format.c:268:16: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
268 | for (i = 0; i < r->p->n_cigar; ++i) {
| ^
format.c: In function 'mm_write_sam3':
format.c:391:36: warning: variable 'this_rev' set but not used [-Wunused-but-set-variable]
391 | int this_rid = -1, this_pos = -1, this_rev = 0;
| ^~~~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c hit.c -o build/temp.linux-armhf-3.8/hit.o -DHAVE_KALLOC
hit.c: In function 'mm_hit_sort':
hit.c:171:48: warning: variable 'no_cigar' set but not used [-Wunused-but-set-variable]
171 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
| ^~~~~~~~
hit.c:171:33: warning: variable 'has_cigar' set but not used [-Wunused-but-set-variable]
171 | int32_t i, n_aux, n = *n_regs, has_cigar = 0, no_cigar = 0;
| ^~~~~~~~~
hit.c: In function 'mm_join_long':
hit.c:324:40: warning: operand of '?:' changes signedness from 'int' to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare]
324 | max_gap = a0e->x + max_gap > a1s->x? max_gap : a1s->x - a0e->x;
| ^~~~~~~
hit.c:325:40: warning: operand of '?:' changes signedness from 'int' to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare]
325 | min_gap = a0e->x + min_gap < a1s->x? min_gap : a1s->x - a0e->x;
| ^~~~~~~
hit.c: In function 'mm_gen_regs':
hit.c:74:18: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
74 | r = (mm_reg1_t*)calloc(n_u, sizeof(mm_reg1_t));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from hit.c:2:
/usr/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here
542 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c index.c -o build/temp.linux-armhf-3.8/index.o -DHAVE_KALLOC
index.c: In function 'mm_idx_name2id':
index.c:149:25: warning: operand of '?:' changes signedness from 'int' to 'uint32_t' {aka 'unsigned int'} due to unsignedness of other operand [-Wsign-compare]
149 | return k == kh_end(h)? -1 : kh_val(h, k);
| ^~
index.c: In function 'mm_idx_gen':
index.c:358:63: warning: operand of '?:' changes signedness from 'int' to 'uint64_t' {aka 'long long unsigned int'} due to unsignedness of other operand [-Wsign-compare]
358 | pl.mini_batch_size = (uint64_t)mini_batch_size < batch_size? mini_batch_size : batch_size;
| ^~~~~~~~~~~~~~~
index.c: In function 'mm_idx_dump':
index.c:458:16: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
458 | for (i = 0; i < 1<<mi->b; ++i) {
| ^
index.c: In function 'mm_idx_load':
index.c:505:16: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
505 | for (i = 0; i < 1<<mi->b; ++i) {
| ^
index.c: In function 'mm_idx_bed_read':
index.c:698:16: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
698 | for (i = 0; i < mi->n_seq; ++i) // TODO: eliminate redundant intervals
| ^
index.c: In function 'mm_idx_bed_junc':
index.c:708:35: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint32_t' {aka 'const unsigned int'} [-Wsign-compare]
708 | if (mi->I == 0 || ctg < 0 || ctg >= mi->n_seq) return -1;
| ^~
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c pe.c -o build/temp.linux-armhf-3.8/pe.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c options.c -o build/temp.linux-armhf-3.8/options.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c ksw2_extd2_sse.c -o build/temp.linux-armhf-3.8/ksw2_extd2_sse.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c ksw2_exts2_sse.c -o build/temp.linux-armhf-3.8/ksw2_exts2_sse.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c ksw2_extz2_sse.c -o build/temp.linux-armhf-3.8/ksw2_extz2_sse.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c ksw2_ll_sse.c -o build/temp.linux-armhf-3.8/ksw2_ll_sse.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c kalloc.c -o build/temp.linux-armhf-3.8/kalloc.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c kthread.c -o build/temp.linux-armhf-3.8/kthread.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c map.c -o build/temp.linux-armhf-3.8/map.o -DHAVE_KALLOC
map.c: In function 'mm_dust_minier':
map.c:52:42: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'uint64_t' {aka 'const long long unsigned int'} due to unsignedness of other operand [-Wsign-compare]
52 | int ss = s > (int32_t)(dreg[v]>>32)? s : dreg[v]>>32;
| ^
map.c:53:36: warning: operand of '?:' changes signedness from 'int32_t' {aka 'int'} to 'unsigned int' due to unsignedness of other operand [-Wsign-compare]
53 | int ee = e < (int32_t)dreg[v]? e : (uint32_t)dreg[v];
| ^
map.c: In function 'mm_map_frag':
map.c:380:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
| ~~^ ~~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
map.c:380:49: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
| ~~^ ~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
map.c:380:61: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
380 | fprintf(stderr, "QM\t%s\t%d\tcap=%ld,nCore=%ld,largest=%ld\n", qname, qlen_sum, kmst.capacity, kmst.n_cores, kmst.largest);
| ~~^ ~~~~~~~~~~~~
| | |
| long int size_t {aka unsigned int}
| %d
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c misc.c -o build/temp.linux-armhf-3.8/misc.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c sdust.c -o build/temp.linux-armhf-3.8/sdust.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c sketch.c -o build/temp.linux-armhf-3.8/sketch.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c esterr.c -o build/temp.linux-armhf-3.8/esterr.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I. -I/usr/include/python3.8 -c splitidx.c -o build/temp.linux-armhf-3.8/splitidx.o -DHAVE_KALLOC
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.17+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/python/mappy.o build/temp.linux-armhf-3.8/align.o build/temp.linux-armhf-3.8/bseq.o build/temp.linux-armhf-3.8/chain.o build/temp.linux-armhf-3.8/format.o build/temp.linux-armhf-3.8/hit.o build/temp.linux-armhf-3.8/index.o build/temp.linux-armhf-3.8/pe.o build/temp.linux-armhf-3.8/options.o build/temp.linux-armhf-3.8/ksw2_extd2_sse.o build/temp.linux-armhf-3.8/ksw2_exts2_sse.o build/temp.linux-armhf-3.8/ksw2_extz2_sse.o build/temp.linux-armhf-3.8/ksw2_ll_sse.o build/temp.linux-armhf-3.8/kalloc.o build/temp.linux-armhf-3.8/kthread.o build/temp.linux-armhf-3.8/map.o build/temp.linux-armhf-3.8/misc.o build/temp.linux-armhf-3.8/sdust.o build/temp.linux-armhf-3.8/sketch.o build/temp.linux-armhf-3.8/esterr.o build/temp.linux-armhf-3.8/splitidx.o -lz -lm -lpthread -o /<<BUILDDIR>>/minimap2-2.17+dfsg/.pybuild/cpython3_3.8/build/mappy.cpython-38-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.8
copying and adjusting python/minimap2.py -> build/scripts-3.8
changing mode of build/scripts-3.8/minimap2.py from 644 to 755
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<BUILDDIR>>/minimap2-2.17+dfsg/python/mappy.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
debian/test_script
[M::mm_idx_gen::0.009*1.10] collected minimizers
[M::mm_idx_gen::0.013*1.90] sorted minimizers
[M::main::0.013*1.88] loaded/built the index for 1 target sequence(s)
[M::mm_mapopt_update::0.016*1.58] mid_occ = 2
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.018*1.68] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326
[M::worker_pipeline::0.944*1.01] mapped 1 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -a test/MT-human.fa test/MT-orang.fa
[M::main] Real time: 0.951 sec; CPU: 0.960 sec; Peak RSS: 0.003 GB
[M::mm_idx_gen::0.009*1.60] collected minimizers
[M::mm_idx_gen::0.013*1.85] sorted minimizers
[M::main::0.025*1.40] loaded/built the index for 1 target sequence(s)
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.027*1.29] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -d MT-human.mmi test/MT-human.fa
[M::main] Real time: 0.033 sec; CPU: 0.045 sec; Peak RSS: 0.003 GB
[M::main::0.020*0.98] loaded/built the index for 1 target sequence(s)
[M::mm_mapopt_update::0.024*1.04] mid_occ = 2
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.027*0.93] distinct minimizers: 3111 (100.00% are singletons); average occurrences: 1.000; average spacing: 5.326
[M::worker_pipeline::0.965*1.00] mapped 1 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -a MT-human.mmi test/MT-orang.fa
[M::main] Real time: 0.975 sec; CPU: 0.970 sec; Peak RSS: 0.004 GB
rm test.sam
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh_auto_install
dh_auto_install --buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp
running install
running build
running build_ext
skipping 'python/mappy.c' Cython extension (up-to-date)
running build_scripts
running install_lib
creating /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr
creating /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/lib
creating /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.8
creating /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.8/dist-packages
copying /<<BUILDDIR>>/minimap2-2.17+dfsg/.pybuild/cpython3_3.8/build/mappy.cpython-38-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.8/dist-packages
running install_scripts
creating /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/bin
copying build/scripts-3.8/minimap2.py -> /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/bin
changing mode of /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/bin/minimap2.py to 755
running install_egg_info
Writing /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/mappy-2.17.egg-info
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh_installman --language=C
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
dh_python3 -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
debian/rules override_dh_strip
make[1]: Entering directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
debian/rules:51: warning: overriding recipe for target 'override_dh_auto_clean'
debian/rules:15: warning: ignoring old recipe for target 'override_dh_auto_clean'
dh_strip
ranlib /<<BUILDDIR>>/minimap2-2.17+dfsg/debian/libminimap2-dev/usr/lib/libminimap2.a
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.17+dfsg'
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/minimap2/usr/bin/minimap2 was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libminimap2-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-mappy: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'minimap2' in '../minimap2_2.17+dfsg-12_armhf.deb'.
dpkg-deb: building package 'libminimap2-dev' in '../libminimap2-dev_2.17+dfsg-12_armhf.deb'.
dpkg-deb: building package 'python3-mappy-dbgsym' in '../python3-mappy-dbgsym_2.17+dfsg-12_armhf.deb'.
dpkg-deb: building package 'python3-mappy' in '../python3-mappy_2.17+dfsg-12_armhf.deb'.
dpkg-deb: building package 'minimap2-dbgsym' in '../minimap2-dbgsym_2.17+dfsg-12_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../minimap2_2.17+dfsg-12_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-09-17T05:57:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
minimap2_2.17+dfsg-12_armhf.changes:
------------------------------------
Format: 1.8
Date: Tue, 15 Sep 2020 10:54:02 +0200
Source: minimap2
Binary: libminimap2-dev minimap2 minimap2-dbgsym python3-mappy python3-mappy-dbgsym
Architecture: armhf
Version: 2.17+dfsg-12
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libminimap2-dev - development headers for libminimap
minimap2 - versatile pairwise aligner for genomic and spliced nucleotide seq
python3-mappy - Python3 interface minimap2
Closes: 969596
Changes:
minimap2 (2.17+dfsg-12) unstable; urgency=medium
.
[ Michael Hudson-Doyle ]
* d/patches/python-sse4-arch.patch: Only pass -msse4.1 to the compiler on
amd64.
Closes: #969596
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Files:
5a3a9dd2c13463ff30bbb5c32f7ef3d8 110224 libdevel optional libminimap2-dev_2.17+dfsg-12_armhf.deb
3b86bc806708cb12b6a0c4bcc24ee5ed 245068 debug optional minimap2-dbgsym_2.17+dfsg-12_armhf.deb
a6095e44060b3cfdf7ba472c22f75088 13752 science optional minimap2_2.17+dfsg-12_armhf.buildinfo
bc4b9a150714e018b198f69ab441efc7 371392 science optional minimap2_2.17+dfsg-12_armhf.deb
3095c7218b68d74a2958e543e5ede25d 445628 debug optional python3-mappy-dbgsym_2.17+dfsg-12_armhf.deb
3c764a6e0b746a8aefbd197fea2a965d 133376 python optional python3-mappy_2.17+dfsg-12_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libminimap2-dev_2.17+dfsg-12_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 110224 bytes: control archive=1320 bytes.
1035 bytes, 23 lines control
917 bytes, 16 lines md5sums
Package: libminimap2-dev
Source: minimap2
Version: 2.17+dfsg-12
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 314
Depends: zlib1g-dev
Section: libdevel
Priority: optional
Homepage: https://github.com/lh3/minimap2
Description: development headers for libminimap
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
This package contains the C library headers for using minimap in custom tools,
along with a static library.
drwxr-xr-x root/root 0 2020-09-15 08:54 ./
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/include/
-rw-r--r-- root/root 1791 2019-05-05 03:49 ./usr/include/bseq.h
-rw-r--r-- root/root 509 2019-05-05 03:49 ./usr/include/kalloc.h
-rw-r--r-- root/root 4400 2019-05-05 03:49 ./usr/include/kdq.h
-rw-r--r-- root/root 3969 2019-05-05 03:49 ./usr/include/ketopt.h
-rw-r--r-- root/root 21381 2019-05-05 03:49 ./usr/include/khash.h
-rw-r--r-- root/root 8782 2019-05-05 03:49 ./usr/include/kseq.h
-rw-r--r-- root/root 5145 2019-05-05 03:49 ./usr/include/ksort.h
-rw-r--r-- root/root 8318 2019-05-05 03:49 ./usr/include/ksw2.h
-rw-r--r-- root/root 291 2019-05-05 03:49 ./usr/include/kthread.h
-rw-r--r-- root/root 3029 2019-05-05 03:49 ./usr/include/kvec.h
-rw-r--r-- root/root 13005 2019-05-05 03:49 ./usr/include/minimap.h
-rw-r--r-- root/root 4967 2019-05-05 03:49 ./usr/include/mmpriv.h
-rw-r--r-- root/root 574 2019-05-05 03:49 ./usr/include/sdust.h
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/
-rw-r--r-- root/root 224476 2020-09-15 08:54 ./usr/lib/libminimap2.a
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/libminimap2-dev/
-rw-r--r-- root/root 1163 2020-09-15 08:54 ./usr/share/doc/libminimap2-dev/changelog.Debian.gz
-rw-r--r-- root/root 3120 2020-09-15 08:54 ./usr/share/doc/libminimap2-dev/copyright
minimap2-dbgsym_2.17+dfsg-12_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 245068 bytes: control archive=536 bytes.
384 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: minimap2-dbgsym
Source: minimap2
Version: 2.17+dfsg-12
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 262
Depends: minimap2 (= 2.17+dfsg-12)
Section: debug
Priority: optional
Description: debug symbols for minimap2
Build-Ids: 016a49ad9333f62e9d9b94e0c31276ea09431712
drwxr-xr-x root/root 0 2020-09-15 08:54 ./
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/debug/.build-id/01/
-rw-r--r-- root/root 257036 2020-09-15 08:54 ./usr/lib/debug/.build-id/01/6a49ad9333f62e9d9b94e0c31276ea09431712.debug
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-09-15 08:54 ./usr/share/doc/minimap2-dbgsym -> minimap2
minimap2_2.17+dfsg-12_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 371392 bytes: control archive=1488 bytes.
1432 bytes, 27 lines control
972 bytes, 14 lines md5sums
Package: minimap2
Version: 2.17+dfsg-12
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 489
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/lh3/minimap2
Description: versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.
drwxr-xr-x root/root 0 2020-09-15 08:54 ./
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/bin/
-rwxr-xr-x root/root 195144 2020-09-15 08:54 ./usr/bin/minimap2
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc-base/
-rw-r--r-- root/root 553 2020-09-15 08:54 ./usr/share/doc-base/minimap2
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/minimap2/
-rw-r--r-- root/root 1163 2020-09-15 08:54 ./usr/share/doc/minimap2/changelog.Debian.gz
-rw-r--r-- root/root 3120 2020-09-15 08:54 ./usr/share/doc/minimap2/copyright
-rw-r--r-- root/root 253325 2020-09-15 08:54 ./usr/share/doc/minimap2/minimap2.pdf
-rw-r--r-- root/root 347 2020-09-15 08:54 ./usr/share/doc/minimap2/run-unit-test
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/minimap2/test/
-rw-r--r-- root/root 5354 2019-05-05 03:49 ./usr/share/doc/minimap2/test/MT-human.fa.gz
-rw-r--r-- root/root 5367 2019-05-05 03:49 ./usr/share/doc/minimap2/test/MT-orang.fa.gz
-rw-r--r-- root/root 3540 2019-05-05 03:49 ./usr/share/doc/minimap2/test/q-inv.fa.gz
-rw-r--r-- root/root 44 2019-05-05 03:49 ./usr/share/doc/minimap2/test/q2.fa
-rw-r--r-- root/root 2525 2019-05-05 03:49 ./usr/share/doc/minimap2/test/t-inv.fa.gz
-rw-r--r-- root/root 79 2019-05-05 03:49 ./usr/share/doc/minimap2/test/t2.fa
-rw-r--r-- root/root 1095 2020-09-15 08:54 ./usr/share/doc/minimap2/test_script
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/man/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/man/man1/
-rw-r--r-- root/root 7314 2020-09-15 08:54 ./usr/share/man/man1/minimap2.1.gz
python3-mappy-dbgsym_2.17+dfsg-12_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 445628 bytes: control archive=548 bytes.
399 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-mappy-dbgsym
Source: minimap2
Version: 2.17+dfsg-12
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 474
Depends: python3-mappy (= 2.17+dfsg-12)
Section: debug
Priority: optional
Description: debug symbols for python3-mappy
Build-Ids: 2802c184b770c504481792a099ffe51d1629e562
drwxr-xr-x root/root 0 2020-09-15 08:54 ./
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/debug/.build-id/28/
-rw-r--r-- root/root 474272 2020-09-15 08:54 ./usr/lib/debug/.build-id/28/02c184b770c504481792a099ffe51d1629e562.debug
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-09-15 08:54 ./usr/share/doc/python3-mappy-dbgsym -> python3-mappy
python3-mappy_2.17+dfsg-12_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 133376 bytes: control archive=1476 bytes.
1056 bytes, 22 lines control
542 bytes, 7 lines md5sums
251 bytes, 12 lines * postinst #!/bin/sh
400 bytes, 12 lines * prerm #!/bin/sh
Package: python3-mappy
Source: minimap2
Version: 2.17+dfsg-12
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 342
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.2.3.3), python3 (<< 3.9), python3 (>= 3.8~), python3:any
Section: python
Priority: optional
Homepage: https://github.com/lh3/minimap2
Description: Python3 interface minimap2
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
.
This package contains the Python3 interface for using minimap2.
drwxr-xr-x root/root 0 2020-09-15 08:54 ./
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/bin/
-rwxr-xr-x root/root 1341 2020-09-15 08:54 ./usr/bin/minimap2.py
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root 8684 2020-09-15 08:54 ./usr/lib/python3/dist-packages/mappy-2.17.egg-info
-rw-r--r-- root/root 314248 2020-09-15 08:54 ./usr/lib/python3/dist-packages/mappy.cpython-38-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/doc/python3-mappy/
-rw-r--r-- root/root 1163 2020-09-15 08:54 ./usr/share/doc/python3-mappy/changelog.Debian.gz
-rw-r--r-- root/root 3120 2020-09-15 08:54 ./usr/share/doc/python3-mappy/copyright
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/lintian/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 122 2020-09-15 08:54 ./usr/share/lintian/overrides/python3-mappy
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/man/
drwxr-xr-x root/root 0 2020-09-15 08:54 ./usr/share/man/man1/
-rw-r--r-- root/root 460 2020-09-15 08:54 ./usr/share/man/man1/minimap2.py.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 14168
Build-Time: 293
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 2095
Job: minimap2_2.17+dfsg-12
Machine Architecture: armhf
Package: minimap2
Package-Time: 2437
Source-Version: 2.17+dfsg-12
Space: 14168
Status: successful
Version: 2.17+dfsg-12
--------------------------------------------------------------------------------
Finished at 2020-09-17T05:57:14Z
Build needed 00:40:37, 14168k disc space