minia →
1.6067+dfsg-2 →
armhf → 2014-01-21 07:49:11
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ minia 1.6067+dfsg-2 (armhf) 21 Jan 2014 07:44 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: minia
Version: 1.6067+dfsg-2
Source Version: 1.6067+dfsg-2
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/minia-FuxMK5/minia-1.6067+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/minia-FuxMK5' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-6c177411-6e7c-4556-aded-e65cba80b340' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7198 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8322 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.5 MB in 34s (448 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'minia' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/minia/trunk/
Need to get 216 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main minia 1.6067+dfsg-2 (dsc) [1977 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main minia 1.6067+dfsg-2 (tar) [203 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main minia 1.6067+dfsg-2 (diff) [10.9 kB]
Fetched 216 kB in 0s (305 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-oPJNo1/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/760 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12149 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), bc, zlib1g-dev
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), bc, zlib1g-dev
dpkg-deb: building package `sbuild-build-depends-minia-dummy' in `/«BUILDDIR»/resolver-LZwHnA/apt_archive/sbuild-build-depends-minia-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install minia build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bc bsdmainutils debhelper file gettext gettext-base groff-base install-info
intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1
libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bc bsdmainutils debhelper file gettext gettext-base groff-base install-info
intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1
libpipeline1 libunistring0 libxml2 man-db po-debconf
sbuild-build-depends-minia-dummy zlib1g-dev
0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded.
Need to get 9135 kB/9136 kB of archives.
After this operation, 22.9 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main install-info armhf 5.2.0.dfsg.1-2 [194 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.6-1 [24.4 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-4 [958 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-3 [943 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-2 [29.5 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main bc armhf 1.06.95-8 [106 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-2 [135 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-2 [1829 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20131227 [687 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 9135 kB in 18s (491 kB/s)
Selecting previously unselected package install-info.
(Reading database ... 12149 files and directories currently installed.)
Preparing to unpack .../install-info_5.2.0.dfsg.1-2_armhf.deb ...
Unpacking install-info (5.2.0.dfsg.1-2) ...
Setting up install-info (5.2.0.dfsg.1-2) ...
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 12163 files and directories currently installed.)
Preparing to unpack .../libpipeline1_1.2.6-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.2.6-1) ...
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Preparing to unpack .../groff-base_1.22.2-4_armhf.deb ...
Unpacking groff-base (1.22.2-4) ...
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Preparing to unpack .../bsdmainutils_9.0.5_armhf.deb ...
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Preparing to unpack .../libxml2_2.9.1+dfsg1-3_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-3) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.0.13-4_armhf.deb ...
Unpacking libffi6:armhf (3.0.13-4) ...
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Preparing to unpack .../libglib2.0-0_2.36.4-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.36.4-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5) ...
Selecting previously unselected package bc.
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Unpacking gettext (0.18.3.1-2) ...
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Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.1) ...
Selecting previously unselected package po-debconf.
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Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Selecting previously unselected package sbuild-build-depends-minia-dummy.
Preparing to unpack .../sbuild-build-depends-minia-dummy.deb ...
Unpacking sbuild-build-depends-minia-dummy (0.invalid.0) ...
Processing triggers for install-info (5.2.0.dfsg.1-2) ...
Setting up libpipeline1:armhf (1.2.6-1) ...
Setting up groff-base (1.22.2-4) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.5-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.3.1-2) ...
Setting up libmagic1:armhf (1:5.14-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libglib2.0-0:armhf (2.36.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up bc (1.06.95-8) ...
Setting up file (1:5.14-2) ...
Setting up gettext-base (0.18.3.1-2) ...
Setting up gettext (0.18.3.1-2) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20131227) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Setting up sbuild-build-depends-minia-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.17-97) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5+rpi1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc-4.6_4.6.4-5+rpi1 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 linux-libc-dev_3.12.6-2+rpi1
Package versions: apt_0.9.14.2 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 bc_1.06.95-8 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-1 cpp-4.6_4.6.4-5+rpi1 cpp-4.8_4.8.2-14 dash_0.5.7-3+nmu1 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.5+rpi1 dpkg-dev_1.17.5+rpi1 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-7 g++_4:4.8.2-1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc_4:4.8.2-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-5+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-9+rpi1 gcc-4.8_4.8.2-14 gcc-4.8-base_4.8.2-14 gettext_0.18.3.1-2 gettext-base_0.18.3.1-2 gnupg_1.4.16-1 gpgv_1.4.16-1 grep_2.15-2 groff-base_1.22.2-4 gzip_1.6-3 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-45 insserv_1.14.0-5 install-info_5.2.0.dfsg.1-2 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.2 libarchive-extract-perl_0.70-1 libasan0_4.8.2-14 libasprintf0c2_0.18.3.1-2 libatomic1_4.8.2-14 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-3 libaudit1_1:2.3.2-3 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.1-3 libcomerr2_1.42.9-2 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.7.10-2 libdpkg-perl_1.17.5+rpi1 libffi6_3.0.13-4 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-14 libgcc1_1:4.8.2-14 libgdbm3_1.8.3-12 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgomp1_4.8.2-14 libisl10_0.12.1-2 libklibc_2.0.2-1+rpi1 libkmod2_16-2 liblog-message-simple-perl_0.10-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_5.1-1 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.6-1 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libreadline6_6.2+dfsg-0.1 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libslang2_2.2.4-16 libss2_1.42.9-2 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 libswitch-perl_2.16-2 libterm-ui-perl_0.42-1 libtimedate-perl_2.3000-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libudev1_204-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-3 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.5-3 mawk_1.3.3-17 mount_2.20.1-5.5 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.2-2 perl-base_5.18.2-2 perl-modules_5.18.2-2 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-minia-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 sysv-rc_2.88dsf-45 sysvinit_2.88dsf-45 sysvinit-core_2.88dsf-45 sysvinit-utils_2.88dsf-45 tar_1.26+dfsg-8 tzdata_2013i-1 udev_204-6 util-linux_2.20.1-5.5 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Jan 15 08:53:19 2014 UTC using RSA key ID 326D8438
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./minia_1.6067+dfsg-2.dsc
dpkg-source: info: extracting minia in minia-1.6067+dfsg
dpkg-source: info: unpacking minia_1.6067+dfsg.orig.tar.xz
dpkg-source: info: unpacking minia_1.6067+dfsg-2.debian.tar.gz
dpkg-source: info: applying add_hardening
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-6c177411-6e7c-4556-aded-e65cba80b340
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package minia
dpkg-buildpackage: source version 1.6067+dfsg-2
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build minia-1.6067+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make[1]: Entering directory `/«BUILDDIR»/minia-1.6067+dfsg'
rm -rf *.o
make[1]: Leaving directory `/«BUILDDIR»/minia-1.6067+dfsg'
debian/rules override_dh_clean
make[1]: Entering directory `/«BUILDDIR»/minia-1.6067+dfsg'
dh_clean
rm -f minia
make[1]: Leaving directory `/«BUILDDIR»/minia-1.6067+dfsg'
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
make[1]: Entering directory `/«BUILDDIR»/minia-1.6067+dfsg'
rm -rf *.o
g++ -o Pool.o -c Pool.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
g++ -o Bank.o -c Bank.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
Bank.cpp: In member function 'void Bank::init(char**, int)':
Bank.cpp:254:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
^
Bank.cpp: In member function 'void BinaryBank::open(bool)':
Bank.cpp:675:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
^
Bank.cpp: In member function 'void BinaryReads::open(bool)':
Bank.cpp:760:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
^
Bank.cpp: In member function 'int KmersBuffer::readkmers()':
Bank.cpp:922:65: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer
^
g++ -o Bloom.o -c Bloom.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
Bloom.cpp: In member function 'void Bloom::load(char*)':
Bloom.cpp:257:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(blooma, sizeof(unsigned char), nchar, file_data);
^
g++ -o Hash16.o -c Hash16.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
g++ -o LargeInt.o -c LargeInt.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
g++ -o Kmer.o -c Kmer.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
g++ -o Terminator.o -c Terminator.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
g++ -o Traversal.o -c Traversal.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
Traversal.cpp: In member function 'bool MonumentTraversal::find_starting_kmer(kmer_type, kmer_type&)':
Traversal.cpp:344:66: warning: format '%d' expects a matching 'int' argument [-Wformat=]
if (debug) printf("strand %d shouldnt continue\n");
^
Traversal.cpp:358:72: warning: format '%d' expects a matching 'int' argument [-Wformat=]
if (debug) printf("strand %d nothing more to explore\n");
^
g++ -o LinearCounter.o -c LinearCounter.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
g++ -o Set.o -c Set.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
Set.cpp: In member function 'void AssocSet::print_total_size()':
Set.cpp:132:48: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
printf("Assoc set size: %li\n",liste.size());
^
Set.cpp:133:103: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
printf("Assoc set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
^
Set.cpp:133:103: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<short unsigned int>::size_type {aka unsigned int}' [-Wformat=]
Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
);
^
Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<short unsigned int>::size_type {aka unsigned int}' [-Wformat=]
Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
Set.cpp: In member function 'void AssocPairedSet::print_total_size()':
Set.cpp:296:55: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
printf("Assoc paired set size: %li\n",liste.size());
^
Set.cpp:297:110: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
printf("Assoc paired set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity());
^
Set.cpp:297:110: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<pair_nt_kmer>::size_type {aka unsigned int}' [-Wformat=]
Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
);
^
Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<pair_nt_kmer>::size_type {aka unsigned int}' [-Wformat=]
Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
Set.cpp: In member function 'void AssocPairedSet::load(char*)':
Set.cpp:288:82: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data);
^
g++ -o Utils.o -c Utils.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
Utils.cpp: In function 'uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)':
Utils.cpp:434:96: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("Inaccurate estimation, restarting with %d MB RAM\n",(2*nbytes_memory)/1024/1024);
^
Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)':
Utils.cpp:182:42: warning: ignoring return value of 'int ftruncate(int, __off64_t)', declared with attribute warn_unused_result [-Wunused-result]
ftruncate(fileno(F_kmercpt_write), 0); //erase previous file
^
Utils.cpp:194:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cptk, sizeof(cptk), 1, F_kmercpt_read);
^
Utils.cpp:220:45: warning: ignoring return value of 'int ftruncate(int, __off64_t)', declared with attribute warn_unused_result [-Wunused-result]
ftruncate(fileno(F_kmercpt_read), 0); //erase previous file
^
g++ -o SortingCount.o -c SortingCount.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)':
SortingCount.cpp:52:50: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
getcwd(current_path,sizeof(current_path));
^
SortingCount.cpp:247:52: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system("echo 3 > /proc/sys/vm/drop_caches");
^
SortingCount.cpp:467:56: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
system("echo 3 > /proc/sys/vm/drop_caches");
^
g++ -o Debloom.o -c Debloom.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
Debloom.cpp: In function 'Set* load_false_positives_cascading4()':
Debloom.cpp:370:89: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'int' [-Wformat=]
printf("\nInserted %lld (estimated, %llu) kmers in B3.\n", addKmers, estimated_T2_size);
^
Debloom.cpp:394:89: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'int' [-Wformat=]
printf("\nInserted %lld (estimated, %lld) kmers in B4.\n", addKmers, estimated_T3_size);
^
Debloom.cpp:424:115: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'int' [-Wformat=]
printf("\nInserted %lld (estimated, %lld) kmers in T4.\n\n", addKmers, (uint64_t)fp->false_positives->capacity());
^
Debloom.cpp: In function 'void end_debloom_partition(bool)':
Debloom.cpp:30:39: warning: ignoring return value of 'int ftruncate(int, __off64_t)', declared with attribute warn_unused_result [-Wunused-result]
ftruncate(fileno(F_debloom_write), 0); //erase previous file
^
g++ -o OAHash.o -c OAHash.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64
g++ -o minia Pool.o Bank.o Bloom.o Hash16.o LargeInt.o Kmer.o Terminator.o Traversal.o LinearCounter.o Set.o Utils.o SortingCount.o Debloom.o OAHash.o Minia.cpp -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O4 -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -lz
make[1]: Leaving directory `/«BUILDDIR»/minia-1.6067+dfsg'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `minia' in `../minia_1.6067+dfsg-2_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../minia_1.6067+dfsg-2_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build minia-1.6067+dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140121-0749
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
minia_1.6067+dfsg-2_armhf.changes:
──────────────────────────────────
Format: 1.8
Date: Mon, 13 Jan 2014 13:24:12 +0100
Source: minia
Binary: minia
Architecture: armhf
Version: 1.6067+dfsg-2
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description:
minia - short-read biological sequence assembler
Closes: 735158 735331
Changes:
minia (1.6067+dfsg-2) unstable; urgency=low
.
[ Olivier Sallou ]
* d/control: Add info on assembler term (Closes: #735158).
Add missing deps (Closes: #735331).
.
[ Andreas Tille ]
* d/upstream: Fixed reference
Checksums-Sha1:
a6b694a8e7218ebcff62d8fa345dd3c083ab3d17 59874 minia_1.6067+dfsg-2_armhf.deb
Checksums-Sha256:
1cbc9ab0b988519d59e3a28b34cfad935b9c2750bde17b007f9b5457f53c7ca4 59874 minia_1.6067+dfsg-2_armhf.deb
Files:
499e138af947f57a21682fadda9ecb5e 59874 science optional minia_1.6067+dfsg-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
minia_1.6067+dfsg-2_armhf.deb
─────────────────────────────
new debian package, version 2.0.
size 59874 bytes: control archive=722 bytes.
669 bytes, 16 lines control
254 bytes, 4 lines md5sums
Package: minia
Version: 1.6067+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 144
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.2.3.4), bc
Section: science
Priority: optional
Homepage: http://minia.genouest.org/
Description: short-read biological sequence assembler
Short-read DNA sequence assembler based on a de Bruijn graph,
capable of assembling a human genome on a desktop computer in a day.
.
The output of Minia is a set of contigs.
Minia produces results of similar contiguity and accuracy to other
de Bruijn assemblers (e.g. Velvet).
drwxr-xr-x root/root 0 2014-01-21 07:49 ./
drwxr-xr-x root/root 0 2014-01-21 07:49 ./usr/
drwxr-xr-x root/root 0 2014-01-21 07:49 ./usr/bin/
-rwxr-xr-x root/root 120704 2014-01-21 07:49 ./usr/bin/minia
drwxr-xr-x root/root 0 2014-01-21 07:49 ./usr/share/
drwxr-xr-x root/root 0 2014-01-21 07:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-01-21 07:49 ./usr/share/doc/minia/
-rw-r--r-- root/root 343 2014-01-13 11:19 ./usr/share/doc/minia/README.Debian
-rw-r--r-- root/root 25239 2014-01-13 11:30 ./usr/share/doc/minia/copyright
-rw-r--r-- root/root 288 2014-01-15 08:52 ./usr/share/doc/minia/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 4476
Build-Time: 97
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 126
Job: minia_1.6067+dfsg-2
Machine Architecture: armhf
Package: minia
Package-Time: 275
Source-Version: 1.6067+dfsg-2
Space: 4476
Status: successful
Version: 1.6067+dfsg-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20140121-0749
Build needed 00:04:35, 4476k disc space