metabat →
2.15-2 →
armhf → 2020-07-17 18:51:00
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| metabat 2.15-2 (armhf) Fri, 17 Jul 2020 18:43:17 +0000 |
+==============================================================================+
Package: metabat
Version: 2.15-2
Source Version: 2.15-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-5309454e-c581-40f4-8131-cd77e86af120' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.6 MB in 11s (2299 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'metabat' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/metabat.git
Please use:
git clone https://salsa.debian.org/med-team/metabat.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 207 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main metabat 2.15-2 (dsc) [2158 B]
Get:2 http://172.17.0.1/private bullseye-staging/main metabat 2.15-2 (tar) [196 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main metabat 2.15-2 (diff) [9612 B]
Fetched 207 kB in 0s (675 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/metabat-GIbJ4U/metabat-2.15' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/metabat-GIbJ4U' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-34UEl7/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-34UEl7/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-34UEl7/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (3589 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (52.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12307 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, libboost-graph-dev, libboost-system-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-program-options-dev, libboost-iostreams-dev, zlib1g-dev, libhts-dev, pkg-config, python3
Filtered Build-Depends: debhelper-compat (= 13), cmake, libboost-graph-dev, libboost-system-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-program-options-dev, libboost-iostreams-dev, zlib1g-dev, libhts-dev, pkg-config, python3
dpkg-deb: building package 'sbuild-build-depends-metabat-dummy' in '/<<BUILDDIR>>/resolver-34UEl7/apt_archive/sbuild-build-depends-metabat-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-metabat-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Sources [577 B]
Get:5 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ Packages [653 B]
Fetched 2563 B in 1s (3839 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install metabat build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13
libboost-filesystem-dev libboost-filesystem1.71-dev
libboost-filesystem1.71.0 libboost-graph-dev libboost-graph1.71-dev
libboost-graph1.71.0 libboost-iostreams-dev libboost-iostreams1.71-dev
libboost-iostreams1.71.0 libboost-program-options-dev
libboost-program-options1.71-dev libboost-program-options1.71.0
libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization-dev
libboost-serialization1.71-dev libboost-serialization1.71.0
libboost-system-dev libboost-system1.71-dev libboost-system1.71.0
libboost-test1.71-dev libboost-test1.71.0 libboost1.71-dev libbrotli1
libcroco3 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1
libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2
libhts-dev libhts3 libicu-dev libicu67 libjsoncpp1 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libmpdec2
libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-stdlib
libpython3.8-minimal libpython3.8-stdlib librhash0 librtmp1 libsigsegv2
libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db
mime-support pkg-config po-debconf procps python3 python3-minimal python3.8
python3.8-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip graphviz
libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev
libboost-container1.71-dev libboost-context1.71-dev
libboost-contract1.71-dev libboost-coroutine1.71-dev
libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-graph-parallel1.71-dev libboost-locale1.71-dev libboost-log1.71-dev
libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev
libboost-numpy1.71-dev libboost-python1.71-dev libboost-random1.71-dev
libboost-stacktrace1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev
libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev
libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc liblzma-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv
python3.8-doc binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13
libboost-filesystem-dev libboost-filesystem1.71-dev
libboost-filesystem1.71.0 libboost-graph-dev libboost-graph1.71-dev
libboost-graph1.71.0 libboost-iostreams-dev libboost-iostreams1.71-dev
libboost-iostreams1.71.0 libboost-program-options-dev
libboost-program-options1.71-dev libboost-program-options1.71.0
libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization-dev
libboost-serialization1.71-dev libboost-serialization1.71.0
libboost-system-dev libboost-system1.71-dev libboost-system1.71.0
libboost-test1.71-dev libboost-test1.71.0 libboost1.71-dev libbrotli1
libcroco3 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1
libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2
libhts-dev libhts3 libicu-dev libicu67 libjsoncpp1 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libmpdec2
libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 libpython3-stdlib
libpython3.8-minimal libpython3.8-stdlib librhash0 librtmp1 libsigsegv2
libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db
mime-support pkg-config po-debconf procps python3 python3-minimal python3.8
python3.8-minimal sbuild-build-depends-metabat-dummy sensible-utils
zlib1g-dev
0 upgraded, 95 newly installed, 0 to remove and 4 not upgraded.
Need to get 59.8 MB of archives.
After this operation, 354 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-34UEl7/apt_archive ./ sbuild-build-depends-metabat-dummy 0.invalid.0 [944 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.4-1 [752 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.4-1 [1627 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.4-1 [1599 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.4-1 [420 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-2 [8286 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-1 [295 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10 [61.7 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10 [112 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10 [320 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10 [135 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-2 [61.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.38.0-3 [115 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.3-2 [1158 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-2 [170 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-6+b1 [9099 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.71.0 armhf 1.71.0-6+b1 [260 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.71.0 armhf 1.71.0-6+b1 [231 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.71-dev armhf 1.71.0-6+b1 [232 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.71-dev armhf 1.71.0-6+b1 [270 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem-dev armhf 1.71.0.3+b2 [4440 B]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.71.0 armhf 1.71.0-6+b1 [435 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph1.71.0 armhf 1.71.0-6+b1 [303 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-2 [9216 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.71-dev armhf 1.71.0-6+b1 [571 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.71.0 armhf 1.71.0-6+b1 [308 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.71-dev armhf 1.71.0-6+b1 [382 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libboost-test1.71.0 armhf 1.71.0-6+b1 [419 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libboost-test1.71-dev armhf 1.71.0-6+b1 [519 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph1.71-dev armhf 1.71.0-6+b1 [342 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph-dev armhf 1.71.0.3+b2 [4512 B]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.71.0 armhf 1.71.0-6+b1 [256 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.71-dev armhf 1.71.0-6+b1 [271 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams-dev armhf 1.71.0.3+b2 [4388 B]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71.0 armhf 1.71.0-6+b1 [341 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71-dev armhf 1.71.0-6+b1 [396 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.71.0.3+b2 [4416 B]
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Get:95 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
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Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libboost-serialization1.71.0:armhf (1.71.0-6+b1) ...
Setting up cmake-data (3.16.3-3+rpi1) ...
Setting up libboost-system1.71.0:armhf (1.71.0-6+b1) ...
Setting up libkrb5-3:armhf (1.17-10) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up libboost-graph1.71.0:armhf (1.71.0-6+b1) ...
Setting up libpython3.8-stdlib:armhf (3.8.4-1) ...
Setting up python3.8 (3.8.4-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libicu-dev:armhf (67.1-2) ...
Setting up libxml2:armhf (2.9.10+dfsg-5+b1) ...
Setting up libprocps8:armhf (2:3.3.16-5) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libboost-program-options1.71.0:armhf (1.71.0-6+b1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libboost-program-options1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libtool (2.4.6-14) ...
Setting up libarchive13:armhf (3.4.3-1) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up libboost-system1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libboost-test1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libboost-program-options-dev:armhf (1.71.0.3+b2) ...
Setting up libboost-filesystem1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libgssapi-krb5-2:armhf (1.17-10) ...
Setting up libboost-regex1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libboost-serialization1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libboost-serialization-dev:armhf (1.71.0.3+b2) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libcurl4:armhf (7.68.0-1) ...
Setting up libboost-filesystem-dev:armhf (1.71.0.3+b2) ...
Setting up libboost-iostreams1.71-dev:armhf (1.71.0-6+b1) ...
Setting up libboost-graph1.71-dev:armhf (1.71.0-6+b1) ...
Setting up automake (1:1.16.2-3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libboost-graph-dev:armhf (1.71.0.3+b2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libboost-system-dev:armhf (1.71.0.3+b2) ...
Setting up libcurl3-gnutls:armhf (7.68.0-1) ...
Setting up libboost-iostreams-dev:armhf (1.71.0.3+b2) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up cmake (3.16.3-3+rpi1) ...
Setting up libhts3:armhf (1.10.2-4) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.10.2-4) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2) ...
Setting up sbuild-build-depends-metabat-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-14+rpi1 gcc-9_9.3.0-14+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-14+rpi1 libstdc++6_10.1.0-4+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdextrautils_2.35.2-6 bsdutils_1:2.35.2-6 build-essential_12.8 bzip2_1.0.8-3 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-14+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dmsetup_2:1.02.167-1+b2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.2-6 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-14+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-4+rpi1 gcc-9_9.3.0-14+rpi1 gcc-9-base_9.3.0-14+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-2 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.6 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-14+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.1.0-4+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblkid1_2.35.2-6 libboost-filesystem-dev_1.71.0.3+b2 libboost-filesystem1.71-dev_1.71.0-6+b1 libboost-filesystem1.71.0_1.71.0-6+b1 libboost-graph-dev_1.71.0.3+b2 libboost-graph1.71-dev_1.71.0-6+b1 libboost-graph1.71.0_1.71.0-6+b1 libboost-iostreams-dev_1.71.0.3+b2 libboost-iostreams1.71-dev_1.71.0-6+b1 libboost-iostreams1.71.0_1.71.0-6+b1 libboost-program-options-dev_1.71.0.3+b2 libboost-program-options1.71-dev_1.71.0-6+b1 libboost-program-options1.71.0_1.71.0-6+b1 libboost-regex1.71-dev_1.71.0-6+b1 libboost-regex1.71.0_1.71.0-6+b1 libboost-serialization-dev_1.71.0.3+b2 libboost-serialization1.71-dev_1.71.0-6+b1 libboost-serialization1.71.0_1.71.0-6+b1 libboost-system-dev_1.71.0.3+b2 libboost-system1.71-dev_1.71.0-6+b1 libboost-system1.71.0_1.71.0-6+b1 libboost-test1.71-dev_1.71.0-6+b1 libboost-test1.71.0_1.71.0-6+b1 libboost1.71-dev_1.71.0-6+b1 libbrotli1_1.0.7-6.1 libbz2-1.0_1.0.8-3 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.36-1 libcap2-bin_1:2.36-1 libcc1-0_10.1.0-4+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libcryptsetup12_2:2.3.3-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libcurl3-gnutls_7.68.0-1 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.2 libdeflate0_1.6-1 libdevmapper1.02.1_2:1.02.167-1+b2 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.2-6 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-9-dev_9.3.0-14+rpi1 libgcc-s1_10.1.0-4+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2 libgomp1_10.1.0-4+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-4 libhts3_1.10.2-4 libicu-dev_67.1-2 libicu67_67.1-2 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-9 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libksba8_1.4.0-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-6 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.41.0-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-cap_1:2.36-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.4-1 libpython3.8-stdlib_3.8.4-1 libreadline7_7.0-5 libreadline8_8.0-4 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.2-6 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-14+rpi1 libstdc++6_10.1.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-2+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.35.2-6 libuv1_1.38.0-3 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.35.2-6 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 procps_2:3.3.16-5 python3_3.8.2-3 python3-minimal_3.8.2-3 python3.8_3.8.4-1 python3.8-minimal_3.8.4-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-metabat-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.2-6 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jul 15 08:39:26 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./metabat_2.15-2.dsc
dpkg-source: info: extracting metabat in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking metabat_2.15.orig.tar.gz
dpkg-source: info: unpacking metabat_2.15-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-5309454e-c581-40f4-8131-cd77e86af120
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package metabat
dpkg-buildpackage: info: source version 2.15-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Installing None MetaBAT into /usr
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2")
-- Checking for module 'htslib'
-- Found htslib, version 1.10.2-4
-- Found Boost: /usr/include (found suitable version "1.71.0", minimum required is "1.55.0") found components: program_options filesystem system graph serialization iostreams regex
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
Using OpenMP
Boost cmake dir:
Boost include: /usr/include
Boost libraries:/usr/lib/arm-linux-gnueabihf/libboost_program_options.a/usr/lib/arm-linux-gnueabihf/libboost_filesystem.a/usr/lib/arm-linux-gnueabihf/libboost_system.a/usr/lib/arm-linux-gnueabihf/libboost_graph.a/usr/lib/arm-linux-gnueabihf/libboost_serialization.a/usr/lib/arm-linux-gnueabihf/libboost_iostreams.a/usr/lib/arm-linux-gnueabihf/libboost_regex.a
Boost lib ver:1_71
Boost lib dir:/usr/lib/arm-linux-gnueabihf
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/contigOverlaps.dir/DependInfo.cmake --color=
make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/depend
make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/metabat2.dir/DependInfo.cmake --color=
make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/metabat1.dir/DependInfo.cmake --color=
Scanning dependencies of target contigOverlaps
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Scanning dependencies of target jgi_summarize_bam_contig_depths
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build
Scanning dependencies of target metabat1
Scanning dependencies of target metabat2
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/build
make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 12%] Building CXX object src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>> -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -c /<<PKGBUILDDIR>>/src/contigOverlaps.cpp
[ 25%] Building CXX object src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>> -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -c /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.cpp
[ 37%] Building CXX object src/CMakeFiles/metabat2.dir/metabat2.cpp.o
[ 50%] Building CXX object src/CMakeFiles/metabat1.dir/metabat1.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>> -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/metabat1.dir/metabat1.cpp.o -c /<<PKGBUILDDIR>>/src/metabat1.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>> -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/metabat2.dir/metabat2.cpp.o -c /<<PKGBUILDDIR>>/src/metabat2.cpp
In file included from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.h:35,
from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.cpp:5:
/<<PKGBUILDDIR>>/src/BamUtils.h: In member function ‘bam1_t* BamCache::getBam(const bam1_t*)’:
/<<PKGBUILDDIR>>/src/BamUtils.h:98:13: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result]
98 | bam_copy1(bam, copy);
| ~~~~~~~~~^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.h:35,
from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.cpp:5:
/<<PKGBUILDDIR>>/src/BamUtils.h: In member function ‘NameBamMap::iterator NameBamMap::insert(std::string, const bam1_t*, bool)’:
/<<PKGBUILDDIR>>/src/BamUtils.h:271:14: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result]
271 | bam_copy1(existing->second, bam);
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.h:35,
from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.cpp:5:
/<<PKGBUILDDIR>>/src/BamUtils.h: In static member function ‘static int BamUtils::_findPairInFile(const bam1_t*, void*)’:
/<<PKGBUILDDIR>>/src/BamUtils.h:582:13: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result]
582 | bam_copy1(data->mate, orphan);
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 62%] Linking CXX executable contigOverlaps
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/contigOverlaps.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -o contigOverlaps -lhts /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_program_options.a /usr/lib/arm-linux-gnueabihf/libboost_filesystem.a /usr/lib/arm-linux-gnueabihf/libboost_system.a /usr/lib/arm-linux-gnueabihf/libboost_graph.a /usr/lib/arm-linux-gnueabihf/libboost_serialization.a /usr/lib/arm-linux-gnueabihf/libboost_iostreams.a /usr/lib/arm-linux-gnueabihf/libboost_regex.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 62%] Built target contigOverlaps
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.h:20,
from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RunningStats; _Alloc = std::allocator<RunningStats>]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<RunningStats>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<RunningStats*, std::vector<RunningStats> >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.h:20,
from /<<PKGBUILDDIR>>/src/jgi_summarize_bam_contig_depths.cpp:5:
/usr/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<RunningStats*, std::vector<RunningStats> >’ changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/<<PKGBUILDDIR>>/src/metabat2.h: In function ‘long long unsigned int rdtsc()’:
/<<PKGBUILDDIR>>/src/metabat2.h:264:55: error: impossible constraint in ‘asm’
264 | __asm__ __volatile__ ("rdtsc" : "=a" (lo), "=d" (hi));
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/metabat2.h:5,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<PKGBUILDDIR>>/src/metabat2.h:4,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<PKGBUILDDIR>>/src/metabat2.h:4,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function ‘_RandomAccessIterator std::__partial_sort_copy(_InputIterator, _InputIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1682 | __partial_sort_copy(_InputIterator __first, _InputIterator __last,
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1682:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/metabat2.h:5,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<PKGBUILDDIR>>/src/metabat2.h:4,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >; _Distance = int; _Tp = std::pair<unsigned int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<CompareEdge>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/metabat2.h:5,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<unsigned int, double>}; _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<unsigned int, double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<PKGBUILDDIR>>/src/metabat2.h:5,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function ‘_Z13gen_tnf_graphR5Graphd._omp_fn.0’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/metabat2.h:5,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<PKGBUILDDIR>>/src/metabat2.h:5,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<PKGBUILDDIR>>/src/metabat2.h:4,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/stl_algo.h:1758:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1758 | return std::__partial_sort_copy(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1759 | __result_first, __result_last,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1760 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1758:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<PKGBUILDDIR>>/src/metabat2.h:5,
from /<<PKGBUILDDIR>>/src/metabat2.cpp:1:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[3]: *** [src/CMakeFiles/metabat2.dir/build.make:66: src/CMakeFiles/metabat2.dir/metabat2.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: *** [CMakeFiles/Makefile2:178: src/CMakeFiles/metabat2.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 75%] Linking CXX executable jgi_summarize_bam_contig_depths
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/jgi_summarize_bam_contig_depths.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -o jgi_summarize_bam_contig_depths -lhts /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_program_options.a /usr/lib/arm-linux-gnueabihf/libboost_filesystem.a /usr/lib/arm-linux-gnueabihf/libboost_system.a /usr/lib/arm-linux-gnueabihf/libboost_graph.a /usr/lib/arm-linux-gnueabihf/libboost_serialization.a /usr/lib/arm-linux-gnueabihf/libboost_iostreams.a /usr/lib/arm-linux-gnueabihf/libboost_regex.a
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/metabat1.h:4,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<int, double>&}; _Tp = std::pair<int, double>; _Alloc = std::allocator<std::pair<int, double> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<int, double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<PKGBUILDDIR>>/src/metabat1.h:4,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair<int, double>; _Alloc = std::allocator<std::pair<int, double> >]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 75%] Built target jgi_summarize_bam_contig_depths
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/metabat1.h:4,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/any.hpp:17,
from /usr/include/boost/program_options/value_semantic.hpp:12,
from /usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from /<<PKGBUILDDIR>>/src/metabat1.h:38,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<int, double>&, const std::pair<int, double>&)>]’:
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<int, double>&, const std::pair<int, double>&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<int, double>&, const std::pair<int, double>&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<int, double>&, const std::pair<int, double>&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1879 | __final_insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1879:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/any.hpp:17,
from /usr/include/boost/program_options/value_semantic.hpp:12,
from /usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from /<<PKGBUILDDIR>>/src/metabat1.h:38,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Distance = int; _Tp = std::pair<int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<int, double>&, const std::pair<int, double>&)>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/any.hpp:17,
from /usr/include/boost/program_options/value_semantic.hpp:12,
from /usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from /<<PKGBUILDDIR>>/src/metabat1.h:38,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<int, double>&, const std::pair<int, double>&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<int, double>&, const std::pair<int, double>&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1962:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1962 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~
/usr/include/c++/9/bits/stl_algo.h:1962:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1970:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1970 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void pam_loop(int, ContigVector&, std::vector<double>&, ContigSet&, ClassMap&)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1970:31: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1970 | std::__final_insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘int main(int, char**)’:
/usr/include/c++/9/bits/stl_algo.h:4899:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
4899 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:4899:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
4899 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<PKGBUILDDIR>>/src/metabat1.h:4,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/any.hpp:17,
from /usr/include/boost/program_options/value_semantic.hpp:12,
from /usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from /<<PKGBUILDDIR>>/src/metabat1.h:38,
from /<<PKGBUILDDIR>>/src/metabat1.cpp:1:
/usr/include/c++/9/bits/stl_algo.h:4899:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
4899 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp));
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Linking CXX executable metabat1
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metabat1.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/metabat1.dir/metabat1.cpp.o -o metabat1 -lhts /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_program_options.a /usr/lib/arm-linux-gnueabihf/libboost_filesystem.a /usr/lib/arm-linux-gnueabihf/libboost_system.a /usr/lib/arm-linux-gnueabihf/libboost_graph.a /usr/lib/arm-linux-gnueabihf/libboost_serialization.a /usr/lib/arm-linux-gnueabihf/libboost_iostreams.a /usr/lib/arm-linux-gnueabihf/libboost_regex.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 87%] Built target metabat1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[1]: *** [Makefile:144: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:11: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-07-17T18:50:56Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 30516
Build-Time: 113
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 324
Job: metabat_2.15-2
Machine Architecture: armhf
Package: metabat
Package-Time: 459
Source-Version: 2.15-2
Space: 30516
Status: attempted
Version: 2.15-2
--------------------------------------------------------------------------------
Finished at 2020-07-17T18:50:56Z
Build needed 00:07:39, 30516k disk space