megahit →
1.2.9-1 →
armhf → 2020-09-16 17:24:14
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| megahit 1.2.9-1 (armhf) Wed, 16 Sep 2020 17:08:17 +0000 |
+==============================================================================+
Package: megahit
Version: 1.2.9-1
Source Version: 1.2.9-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-4124f2ea-00a6-437b-b786-c5655fe3a8b4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.4 MB in 28s (874 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'megahit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/megahit.git
Please use:
git clone https://salsa.debian.org/med-team/megahit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 278 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main megahit 1.2.9-1 (dsc) [2027 B]
Get:2 http://172.17.0.1/private bullseye-staging/main megahit 1.2.9-1 (tar) [269 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main megahit 1.2.9-1 (diff) [7376 B]
Fetched 278 kB in 0s (907 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/megahit-Tkgzwl/megahit-1.2.9' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/megahit-Tkgzwl' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-bh2Py2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-bh2Py2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-bh2Py2/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2825 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 21 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12520 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper-compat (= 12), dh-python, python3-all, zlib1g-dev
Filtered Build-Depends: cmake, debhelper-compat (= 12), dh-python, python3-all, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-megahit-dummy' in '/<<BUILDDIR>>/resolver-bh2Py2/apt_archive/sbuild-build-depends-megahit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-megahit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Sources [519 B]
Get:5 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ Packages [599 B]
Fetched 2451 B in 1s (3202 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install megahit build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu67
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0
librtmp1 libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool
libuchardet0 libuv1 libxml2 m4 man-db mime-support po-debconf procps python3
python3-all python3-distutils python3-lib2to3 python3-minimal python3.8
python3.8-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python3.8-venv python3.8-doc binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu67
libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0
librtmp1 libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool
libuchardet0 libuv1 libxml2 m4 man-db mime-support po-debconf procps python3
python3-all python3-distutils python3-lib2to3 python3-minimal python3.8
python3.8-minimal sbuild-build-depends-megahit-dummy zlib1g-dev
0 upgraded, 67 newly installed, 0 to remove and 21 not upgraded.
Need to get 30.4 MB/31.7 MB of archives.
After this operation, 122 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-bh2Py2/apt_archive ./ sbuild-build-depends-megahit-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.5-2 [752 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.5-2 [1628 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.5-2 [1677 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.5-2 [420 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6 [578 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-10+b3 [62.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-10+b3 [112 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-10+b3 [318 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-10+b3 [135 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.0-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.38.0-3 [115 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.0-1 [1173 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.5-1 [78.4 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.5-1 [145 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking sbuild-build-depends-megahit-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up mime-support (3.64) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.0-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.2.1) ...
Setting up libbrotli1:armhf (1.0.9-2) ...
Setting up libnghttp2-14:armhf (1.41.0-3) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libkrb5support0:armhf (1.17-10+b3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libuv1:armhf (1.38.0-3) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libk5crypto3:armhf (1.17-10+b3) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up librhash0:armhf (1.4.0-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.16.3-3+rpi1) ...
Setting up libkrb5-3:armhf (1.17-10+b3) ...
Setting up libpython3.8-stdlib:armhf (3.8.5-2) ...
Setting up python3.8 (3.8.5-2) ...
Setting up libelf1:armhf (0.180-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6) ...
Setting up libprocps8:armhf (2:3.3.16-5) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up libgssapi-krb5-2:armhf (1.17-10+b3) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libcurl4:armhf (7.72.0-1) ...
Setting up python3-lib2to3 (3.8.5-1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.5-1) ...
Setting up dh-python (4.20200315) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3-all (3.8.2-3) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up cmake (3.16.3-3+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Setting up sbuild-build-depends-megahit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-5+rpi1 gcc-10_10.2.0-5+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-2+rpi1 binutils-arm-linux-gnueabihf_2.35-2+rpi1 binutils-common_2.35-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.2.0-5+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1+rpi1 g++-10_10.2.0-5+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.2.0-5+rpi1 gcc-10-base_10.2.0-5+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.2.0-5+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-5+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-2+rpi1 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-6+b1 libbrotli1_1.0.9-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcap2-bin_1:2.43-1 libcc1-0_10.2.0-5+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35-2+rpi1 libctf0_2.35-2+rpi1 libcurl4_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.180-1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-5+rpi1 libgcc-s1_10.2.0-5+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-5+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 libldap-2.4-2_2.4.51+dfsg-1 libldap-common_2.4.51+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-2 libp11-kit0_0.23.21-2 libpam-cap_1:2.43-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.5-2 libpython3.8-stdlib_3.8.5-2 libreadline8_8.0-4 librhash0_1.4.0-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 librust-rand-core-dev_0.5.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.2-1+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_246.2-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libuv1_1.38.0-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 python3_3.8.2-3 python3-all_3.8.2-3 python3-distutils_3.8.5-1 python3-lib2to3_3.8.5-1 python3-minimal_3.8.2-3 python3.8_3.8.5-2 python3.8-minimal_3.8.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-megahit-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-4 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.J_7YQPUr/trustedkeys.kbx': General error
gpgv: Signature made Fri May 15 20:08:54 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./megahit_1.2.9-1.dsc
dpkg-source: info: extracting megahit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking megahit_1.2.9.orig.tar.gz
dpkg-source: info: unpacking megahit_1.2.9-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_test_path.patch
dpkg-source: info: applying 2to3.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-4124f2ea-00a6-437b-b786-c5655fe3a8b4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package megahit
dpkg-buildpackage: info: source version 1.2.9-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3
dh_clean
debian/rules binary-arch
dh binary-arch --with python3
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 10.2.0
-- The CXX compiler identification is GNU 10.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
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-- Detecting CXX compile features
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-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Build type: None: -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"'
-- Configuring done
-- Generating done
CMake Warning:
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CMAKE_EXPORT_NO_PACKAGE_REGISTRY
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cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
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make -f CMakeFiles/Makefile2 all
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make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/depend
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/megahit_toolkit.dir/DependInfo.cmake --color=
make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/depend
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/megahit_core_no_hw_accel.dir/DependInfo.cmake --color=
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/megahit_core.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/megahit_core_popcnt.dir/DependInfo.cmake --color=
Scanning dependencies of target megahit_toolkit
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make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E create_symlink megahit_core_no_hw_accel megahit_toolkit
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[ 0%] Built target megahit_toolkit
Scanning dependencies of target megahit_core_no_hw_accel
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/build
make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/build
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 0%] Building CXX object CMakeFiles/megahit_core.dir/src/main.cpp.o
[ 3%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o
[ 3%] Building CXX object CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o
[ 3%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -mpopcnt -std=gnu++11 -o CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /<<PKGBUILDDIR>>/src/main_assemble.cpp
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -std=gnu++11 -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
c++: error: unrecognized command-line option ‘-mbmi2’
c++: error: unrecognized command-line option ‘-mbmi2’
c++: error: unrecognized command-line option ‘-mpopcnt’
make[3]: *** [CMakeFiles/megahit_core_popcnt.dir/build.make:66: CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
c++: error: unrecognized command-line option ‘-mpopcnt’
make[2]: *** [CMakeFiles/Makefile2:199: CMakeFiles/megahit_core_popcnt.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
c++: error: unrecognized command-line option ‘-mpopcnt’
make[3]: *** [CMakeFiles/megahit_core.dir/build.make:66: CMakeFiles/megahit_core.dir/src/main.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: *** [CMakeFiles/megahit_core.dir/build.make:79: CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o] Error 1
[ 5%] Building CXX object CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o
[ 5%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o
[ 6%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -std=gnu++11 -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -c /<<PKGBUILDDIR>>/src/main_assemble.cpp
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -c /<<PKGBUILDDIR>>/src/main_buildlib.cpp
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -std=gnu++11 -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -c /<<PKGBUILDDIR>>/src/main_buildlib.cpp
c++: error: unrecognized command-line option ‘-mbmi2’
c++: error: unrecognized command-line option ‘-mpopcnt’
make[3]: *** [CMakeFiles/megahit_core.dir/build.make:92: CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: *** [CMakeFiles/Makefile2:226: CMakeFiles/megahit_core.dir/all] Error 2
[ 7%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o
/usr/bin/c++ -I/<<PKGBUILDDIR>>/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/<<PKGBUILDDIR>>/src"' -std=gnu++11 -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -c /<<PKGBUILDDIR>>/src/main_iterate.cpp
In file included from /<<PKGBUILDDIR>>/src/sdbg/sdbg.h:15,
from /<<PKGBUILDDIR>>/src/assembly/unitig_graph.h:11,
from /<<PKGBUILDDIR>>/src/assembly/bubble_remover.h:10,
from /<<PKGBUILDDIR>>/src/assembly/all_algo.h:8,
from /<<PKGBUILDDIR>>/src/main_assemble.cpp:29:
/<<PKGBUILDDIR>>/src/kmlib/kmrns.h:11:10: fatal error: x86intrin.h: No such file or directory
11 | #include <x86intrin.h>
| ^~~~~~~~~~~~~
compilation terminated.
make[3]: *** [CMakeFiles/megahit_core_no_hw_accel.dir/build.make:79: CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
In file included from /<<PKGBUILDDIR>>/src/main.cpp:27:
/<<PKGBUILDDIR>>/src/utils/cpu_dispatch.h: In function ‘int main(int, char**)’:
/<<PKGBUILDDIR>>/src/utils/cpu_dispatch.h:15:3: error: impossible constraint in ‘asm’
15 | asm volatile("cpuid\n\t"
| ^~~
/<<PKGBUILDDIR>>/src/utils/cpu_dispatch.h:29:3: error: impossible constraint in ‘asm’
29 | asm volatile("cpuid\n\t"
| ^~~
/<<PKGBUILDDIR>>/src/utils/cpu_dispatch.h:15:3: error: impossible constraint in ‘asm’
15 | asm volatile("cpuid\n\t"
| ^~~
/<<PKGBUILDDIR>>/src/utils/cpu_dispatch.h:29:3: error: impossible constraint in ‘asm’
29 | asm volatile("cpuid\n\t"
| ^~~
make[3]: *** [CMakeFiles/megahit_core_no_hw_accel.dir/build.make:66: CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o] Error 1
In file included from /usr/include/c++/10/cassert:44,
from /<<PKGBUILDDIR>>/src/sequence/io/edge/edge_writer.h:4,
from /<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:10,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:37:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<1, long long unsigned int>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<1, long long unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<1, long long unsigned int>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:150:51: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
64 | assert(ptr - buffer_.begin() < words_per_kmer_);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<3, unsigned int>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<3, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<3, unsigned int>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:151:51: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<2, long long unsigned int>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<2, long long unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<2, long long unsigned int>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:152:51: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<5, unsigned int>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<5, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<5, unsigned int>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:153:51: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<3, long long unsigned int>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<3, long long unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<3, long long unsigned int>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:154:51: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<7, unsigned int>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<7, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<7, unsigned int>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:155:51: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<4>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<4>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<4>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:156:51: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h: In instantiation of ‘void KmerCollector<KmerType>::WriteToFile(const KmerType&, mul_t) [with KmerType = Kmer<16, unsigned int>; mul_t = short unsigned int]’:
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:44:7: required from ‘void KmerCollector<KmerType>::FlushToFile() [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:141:24: required from ‘bool ReadReadsAndProcessKernel(const {anonymous}::LocalAsmOption&, const IndexType&) [with KmerType = Kmer<16, unsigned int>; IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:157:68: required from ‘void ReadReadsAndProcess(const {anonymous}::LocalAsmOption&, const IndexType&) [with IndexType = ContigFlankIndex<Kmer<16, unsigned int> >]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:194:24: required from ‘void Runner<KmerType>::Run(const {anonymous}::LocalAsmOption&) [with KmerType = Kmer<16, unsigned int>]’
/<<PKGBUILDDIR>>/src/main_iterate.cpp:189:8: required from here
/<<PKGBUILDDIR>>/src/iterate/kmer_collector.h:64:34: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int> >::difference_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:33:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void EdgeWriter::InitFiles()’:
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In static member function ‘static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<SequencePackage<unsigned int>*>, std::__future_base::_Result_base::_Deleter>, std::thread::_Invoker<std::tuple<BaseAsyncSequenceReader<PackageType>::AsyncReadNextBatch<SequencePackage<unsigned int> >::<lambda()> > >, SequencePackage<unsigned int>*>; _ArgTypes = {}]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘virtual void AsyncSequenceReader::ReadOneBatch(SeqPackage*)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void SequencePackage<WordType>::AppendStringSequence(const char*, const char*, unsigned int) [with WordType = unsigned int]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/iterate/contig_flank_index.h:12,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:36:
/<<PKGBUILDDIR>>/src/sequence/sequence_package.h:273:3: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
273 | }
| ^
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In member function ‘int64_t ContigReader::ReadWithMultiplicity(SeqPackage*, std::vector<WordType>*, int64_t, int64_t, bool) [with TMul = float]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘virtual void AsyncContigReader::ReadOneBatch(BaseAsyncSequenceReader<std::pair<SequencePackage<unsigned int>, std::vector<float> > >::package_type*)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In static member function ‘static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = std::unique_ptr<std::__future_base::_Result_base, std::__future_base::_Result_base::_Deleter>; _Functor = std::__future_base::_Task_setter<std::unique_ptr<std::__future_base::_Result<std::pair<SequencePackage<unsigned int>, std::vector<float> >*>, std::__future_base::_Result_base::_Deleter>, std::thread::_Invoker<std::tuple<BaseAsyncSequenceReader<PackageType>::AsyncReadNextBatch<std::pair<SequencePackage<unsigned int>, std::vector<float> > >::<lambda()> > >, std::pair<SequencePackage<unsigned int>, std::vector<float> >*>; _ArgTypes = {}]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void SequencePackage<WordType>::AppendCompactSequence(const TWord*, unsigned int, bool) [with WordType = unsigned int]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘virtual int64_t BinaryReader::Read(SeqPackage*, int64_t, int64_t, bool)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/sequence/io/async_sequence_reader.h:10,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:38:
/<<PKGBUILDDIR>>/src/sequence/io/binary_reader.h:53:3: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
53 | }
| ^
/<<PKGBUILDDIR>>/src/sequence/io/binary_reader.h:53:3: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:33:
/usr/include/c++/10/bits/vector.tcc: In constructor ‘AsyncSequenceReader::AsyncSequenceReader(BaseSequenceReader*, bool, int64_t, int64_t)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In constructor ‘AsyncContigReader::AsyncContigReader(const string&)’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/iterate/contig_flank_index.h:10,
from /<<PKGBUILDDIR>>/src/main_iterate.cpp:36:
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h: In member function ‘phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::erase(phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator) [with Policy = phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<4>, ContigFlankIndex<Kmer<4> >::FlankInfo> >; Hash = KmerHash; Eq = phmap::EqualTo<KmerPlus<Kmer<4>, ContigFlankIndex<Kmer<4> >::FlankInfo> >; Alloc = std::allocator<KmerPlus<Kmer<4>, ContigFlankIndex<Kmer<4> >::FlankInfo> >]’:
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h:1472:14: note: parameter passing for argument of type ‘phmap::container_internal::raw_hash_set<phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<4>, ContigFlankIndex<Kmer<4> >::FlankInfo> >, KmerHash, phmap::EqualTo<KmerPlus<Kmer<4>, ContigFlankIndex<Kmer<4> >::FlankInfo> >, std::allocator<KmerPlus<Kmer<4>, ContigFlankIndex<Kmer<4> >::FlankInfo> > >::iterator’ changed in GCC 7.1
1472 | iterator erase(iterator it) { _erase(it++); return it; }
| ^~~~~
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h: In member function ‘phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::erase(phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator) [with Policy = phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<3, long long unsigned int>, ContigFlankIndex<Kmer<3, long long unsigned int> >::FlankInfo> >; Hash = KmerHash; Eq = phmap::EqualTo<KmerPlus<Kmer<3, long long unsigned int>, ContigFlankIndex<Kmer<3, long long unsigned int> >::FlankInfo> >; Alloc = std::allocator<KmerPlus<Kmer<3, long long unsigned int>, ContigFlankIndex<Kmer<3, long long unsigned int> >::FlankInfo> >]’:
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h:1472:14: note: parameter passing for argument of type ‘phmap::container_internal::raw_hash_set<phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<3, long long unsigned int>, ContigFlankIndex<Kmer<3, long long unsigned int> >::FlankInfo> >, KmerHash, phmap::EqualTo<KmerPlus<Kmer<3, long long unsigned int>, ContigFlankIndex<Kmer<3, long long unsigned int> >::FlankInfo> >, std::allocator<KmerPlus<Kmer<3, long long unsigned int>, ContigFlankIndex<Kmer<3, long long unsigned int> >::FlankInfo> > >::iterator’ changed in GCC 7.1
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h: In member function ‘phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::erase(phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator) [with Policy = phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<2, long long unsigned int>, ContigFlankIndex<Kmer<2, long long unsigned int> >::FlankInfo> >; Hash = KmerHash; Eq = phmap::EqualTo<KmerPlus<Kmer<2, long long unsigned int>, ContigFlankIndex<Kmer<2, long long unsigned int> >::FlankInfo> >; Alloc = std::allocator<KmerPlus<Kmer<2, long long unsigned int>, ContigFlankIndex<Kmer<2, long long unsigned int> >::FlankInfo> >]’:
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h:1472:14: note: parameter passing for argument of type ‘phmap::container_internal::raw_hash_set<phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<2, long long unsigned int>, ContigFlankIndex<Kmer<2, long long unsigned int> >::FlankInfo> >, KmerHash, phmap::EqualTo<KmerPlus<Kmer<2, long long unsigned int>, ContigFlankIndex<Kmer<2, long long unsigned int> >::FlankInfo> >, std::allocator<KmerPlus<Kmer<2, long long unsigned int>, ContigFlankIndex<Kmer<2, long long unsigned int> >::FlankInfo> > >::iterator’ changed in GCC 7.1
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h: In member function ‘phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::erase(phmap::container_internal::raw_hash_set<Policy, Hash, Eq, Alloc>::iterator) [with Policy = phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<1, long long unsigned int>, ContigFlankIndex<Kmer<1, long long unsigned int> >::FlankInfo> >; Hash = KmerHash; Eq = phmap::EqualTo<KmerPlus<Kmer<1, long long unsigned int>, ContigFlankIndex<Kmer<1, long long unsigned int> >::FlankInfo> >; Alloc = std::allocator<KmerPlus<Kmer<1, long long unsigned int>, ContigFlankIndex<Kmer<1, long long unsigned int> >::FlankInfo> >]’:
/<<PKGBUILDDIR>>/src/parallel_hashmap/phmap.h:1472:14: note: parameter passing for argument of type ‘phmap::container_internal::raw_hash_set<phmap::container_internal::FlatHashSetPolicy<KmerPlus<Kmer<1, long long unsigned int>, ContigFlankIndex<Kmer<1, long long unsigned int> >::FlankInfo> >, KmerHash, phmap::EqualTo<KmerPlus<Kmer<1, long long unsigned int>, ContigFlankIndex<Kmer<1, long long unsigned int> >::FlankInfo> >, std::allocator<KmerPlus<Kmer<1, long long unsigned int>, ContigFlankIndex<Kmer<1, long long unsigned int> >::FlankInfo> > >::iterator’ changed in GCC 7.1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: *** [CMakeFiles/Makefile2:142: CMakeFiles/megahit_core_no_hw_accel.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[1]: *** [Makefile:133: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:12: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-09-16T17:24:11Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 432
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 472
Job: megahit_1.2.9-1
Machine Architecture: armhf
Package: megahit
Package-Time: 954
Source-Version: 1.2.9-1
Space: 0
Status: failed
Version: 1.2.9-1
--------------------------------------------------------------------------------
Finished at 2020-09-16T17:24:11Z
Build needed 00:00:00, 0k disc space