mash →
1.1.1-2+b1 →
armhf → 2017-08-17 01:36:52
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| mash 1.1.1-2+b1 (armhf) Thu, 17 Aug 2017 01:30:32 +0000 |
+==============================================================================+
Package: mash
Version: 1.1.1-2+b1
Source Version: 1.1.1-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-c20c172d-adbf-45b8-aeaa-46bc952b350e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.0 MB]
Fetched 22.1 MB in 17s (1230 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'mash' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/mash.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/mash.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6822 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main mash 1.1.1-2 (dsc) [1781 B]
Get:2 http://172.17.0.1/private buster-staging/main mash 1.1.1-2 (tar) [4662 kB]
Get:3 http://172.17.0.1/private buster-staging/main mash 1.1.1-2 (diff) [2158 kB]
Fetched 6822 kB in 1s (3601 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/mash-LbXipc/mash-1.1.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/mash-LbXipc' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-QwCf28/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-QwCf28/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-QwCf28/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (5727 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14837 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), capnproto, libcapnp-dev, libgsl-dev, dh-autoreconf, zlib1g-dev, python-sphinx, libjs-mathjax, asciidoctor
Filtered Build-Depends: debhelper (>= 9), capnproto, libcapnp-dev, libgsl-dev, dh-autoreconf, zlib1g-dev, python-sphinx, libjs-mathjax, asciidoctor
dpkg-deb: building package 'sbuild-build-depends-mash-dummy' in '/<<BUILDDIR>>/resolver-QwCf28/apt_archive/sbuild-build-depends-mash-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-mash-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Sources [549 B]
Get:5 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ Packages [633 B]
Fetched 2515 B in 0s (6546 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install mash build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils capnproto
debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file
fonts-mathjax gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libbsd0 libcapnp-0.5.3 libcapnp-dev libcroco3 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23
libgslcblas0 libicu57 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libruby2.3 libsigsegv2 libssl1.0.2
libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db mime-support
po-debconf python python-alabaster python-babel python-babel-localedata
python-certifi python-chardet python-docutils python-idna python-imagesize
python-jinja2 python-markupsafe python-minimal python-pkg-resources
python-pygments python-requests python-roman python-six python-sphinx
python-tz python-urllib3 python2.7 python2.7-minimal rake ruby
ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby2.3 rubygems-integration sgml-base sphinx-common xml-core
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl
python-doc python-tk fonts-linuxlibertine | ttf-linux-libertine
texlive-lang-french texlive-latex-base texlive-latex-recommended
python-jinja2-doc python-setuptools ttf-bitstream-vera python-cryptography
python-openssl python-socks python-sphinx-rtd-theme dvipng
texlive-latex-extra texlive-fonts-recommended texlive-generic-extra
sphinx-doc python-ntlm python2.7-doc binfmt-support ri ruby-dev bundler
sgml-base-doc
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl
docutils-doc libpaper-utils python-pil python-enum34 python-cryptography
python-ipaddress python-openssl zip fonts-lato
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils capnproto
debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file
fonts-mathjax gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libbsd0 libcapnp-0.5.3 libcapnp-dev libcroco3 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23
libgslcblas0 libicu57 libjs-jquery libjs-mathjax libjs-sphinxdoc
libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libruby2.3 libsigsegv2 libssl1.0.2
libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db mime-support
po-debconf python python-alabaster python-babel python-babel-localedata
python-certifi python-chardet python-docutils python-idna python-imagesize
python-jinja2 python-markupsafe python-minimal python-pkg-resources
python-pygments python-requests python-roman python-six python-sphinx
python-tz python-urllib3 python2.7 python2.7-minimal rake ruby
ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby2.3 rubygems-integration sbuild-build-depends-mash-dummy
sgml-base sphinx-common xml-core zlib1g-dev
0 upgraded, 86 newly installed, 0 to remove and 33 not upgraded.
Need to get 43.5 MB of archives.
After this operation, 191 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-QwCf28/apt_archive ./ sbuild-build-depends-mash-dummy 0.invalid.0 [838 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2l-2 [893 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.31-1 [223 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.31-1 [105 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.31-1 [63.5 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-2+b1 [117 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf rubygems-integration all 1.11 [4994 B]
Get:25 http://172.17.0.1/private buster-staging/main armhf rake all 12.0.0-1 [45.7 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf ruby-did-you-mean all 1.0.0-2 [11.2 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf ruby-minitest all 5.10.3-1 [53.5 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf ruby-power-assert all 0.3.0-1 [7902 B]
Get:30 http://172.17.0.1/private buster-staging/main armhf ruby-test-unit all 3.2.5-1 [71.7 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libruby2.3 armhf 2.3.3-1 [2864 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf ruby2.3 armhf 2.3.3-1 [186 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf ruby armhf 1:2.3.3 [10.8 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf asciidoctor all 1.5.5-1 [183 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2 [736 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcapnp-0.5.3 armhf 0.5.3-2 [507 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf capnproto armhf 0.5.3-2 [195 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.53.4-3 [2628 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-2+b1 [1220 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.7.2 [975 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.17 [23.2 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.13.1+dfsg-2 [200 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf fonts-mathjax all 2.7.0-2 [960 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libcapnp-dev armhf 0.5.3-2 [827 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.4+dfsg-6 [75.1 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.4+dfsg-6 [681 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.4+dfsg-6 [863 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.1.1-2 [154 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.5.6-2 [78.2 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.2.7-2 [169 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf python-tz all 2017.2-2 [33.9 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf python-babel all 2.4.0+dfsg.1-2 [84.3 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf python-certifi all 2017.4.17-2 [177 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf python-chardet all 3.0.4-1 [80.2 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf python-roman all 2.0.0-2 [8130 B]
Get:73 http://172.17.0.1/private buster-staging/main armhf python-docutils all 0.13.1+dfsg-2 [373 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf python-idna all 2.5-1 [33.1 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf python-imagesize all 0.7.1-1 [3814 B]
Get:76 http://172.17.0.1/private buster-staging/main armhf python-markupsafe armhf 1.0-1 [13.4 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf python-jinja2 all 2.9.6-1 [117 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf python-pygments all 2.2.0+dfsg-1 [590 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf python-six all 1.10.0-4 [14.4 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf python-urllib3 all 1.21.1-1 [97.0 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf python-requests all 2.18.1-1 [76.5 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf python-alabaster all 0.7.8-1 [18.4 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.5.6-2 [385 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf python-sphinx all 1.5.6-2 [429 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libjs-mathjax all 2.7.0-2 [5603 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up python-sphinx (1.5.6-2) ...
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Processing triggers for libc-bin (2.24-12) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1+rpi1 gcc-6_6.4.0-1+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.5~beta1+b3 asciidoctor_1.5.5-1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 capnproto_0.5.3-2 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1+rpi1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 docutils-common_0.13.1+dfsg-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 file_1:5.31-1 findutils_4.6.0+git+20170606-3 fonts-mathjax_2.7.0-2 g++_4:6.3.0-4d1 g++-6_6.4.0-1+rpi1 gcc_4:6.3.0-4d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6_6.4.0-1+rpi1 gcc-6-base_6.4.0-1+rpi1 gcc-7-base_7.1.0-9+rpi1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-6 libapt-pkg5.0_1.5~beta1+b3 libarchive-zip-perl_1.59-1 libasan3_6.4.0-1+rpi1 libassuan0_2.4.3-2 libatomic1_7.1.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1 libblkid1_2.29.2-2+rpi1 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcapnp-0.5.3_0.5.3-2 libcapnp-dev_0.5.3-2 libcc1-0_7.1.0-9+rpi1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-12 libdbus-1-3_1.10.20-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm2_2.4.81-2+rpi1 libexpat1_2.2.3-1 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-6-dev_6.4.0-1+rpi1 libgcc1_1:7.1.0-9+rpi1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-9+rpi1 libgpg-error0_1.27-3 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2 libisl15_0.18-1 libjs-jquery_3.1.1-2 libjs-mathjax_2.7.0-2 libjs-sphinxdoc_1.5.6-2 libjs-underscore_1.8.3~dfsg-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-7 libperl5.26_5.26.0-4 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.30-2 libprocps6_2:3.3.12-3 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libruby2.3_2.3.3-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.4-2 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 libsystemd0_233-10 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-9+rpi1 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libxml2_2.9.4+dfsg1-3 libyaml-0-2_0.1.7-2 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-3 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-4 perl-base_5.26.0-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-4 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.13-2 python-alabaster_0.7.8-1 python-babel_2.4.0+dfsg.1-2 python-babel-localedata_2.4.0+dfsg.1-2 python-certifi_2017.4.17-2 python-chardet_3.0.4-1 python-docutils_0.13.1+dfsg-2 python-idna_2.5-1 python-imagesize_0.7.1-1 python-jinja2_2.9.6-1 python-markupsafe_1.0-1 python-minimal_2.7.13-2 python-pkg-resources_36.2.7-2 python-pygments_2.2.0+dfsg-1 python-requests_2.18.1-1 python-roman_2.0.0-2 python-six_1.10.0-4 python-sphinx_1.5.6-2 python-tz_2017.2-2 python-urllib3_1.21.1-1 python2.7_2.7.13-2 python2.7-minimal_2.7.13-2 rake_12.0.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 ruby_1:2.3.3 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.2.5-1 ruby2.3_2.3.3-1 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-mash-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 sgml-base_1.29 sphinx-common_1.5.6-2 systemd_233-10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_233-10 util-linux_2.29.2-2+rpi1 xml-core_0.17 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed May 24 09:03:30 2017 UTC
gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./mash_1.1.1-2.dsc
dpkg-source: info: extracting mash in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking mash_1.1.1.orig.tar.gz
dpkg-source: info: unpacking mash_1.1.1-2.debian.tar.xz
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying use_debian_mathjax.patch
dpkg-source: info: applying drop_memcpy_wrapper.patch
dpkg-source: info: applying link_dynamically_against_capnp.patch
dpkg-source: info: applying parallel.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.1.1-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-c20c172d-adbf-45b8-aeaa-46bc952b350e
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package mash
dpkg-buildpackage: info: source version 1.1.1-2+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build mash-1.1.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf,sphinxdoc --parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -rf /<<PKGBUILDDIR>>/debian/sphinxdoc /<<PKGBUILDDIR>>/debian/man
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --with autoreconf,sphinxdoc --parallel
dh_update_autotools_config -a -O--parallel
dh_autoreconf -a -O--parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --with-capnp=/usr --with-gsl=/usr --prefix=/<<PKGBUILDDIR>>/debian/tmp/usr
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-capnp=/usr --with-gsl=/usr --prefix=/<<PKGBUILDDIR>>/debian/tmp/usr
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for capnp... yes
checking capnp/common.h usability... yes
checking capnp/common.h presence... yes
checking for capnp/common.h... yes
checking gsl/gsl_cdf.h usability... yes
checking gsl/gsl_cdf.h presence... yes
checking for gsl/gsl_cdf.h... yes
configure: creating ./config.status
config.status: creating Makefile
configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd src/mash/capnp;export PATH=/usr/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games;capnp compile -I /usr/include -oc++ MinHash.capnp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Command.o src/mash/Command.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandBounds.o src/mash/CommandBounds.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandContain.o src/mash/CommandContain.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandDistance.o src/mash/CommandDistance.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandFind.o src/mash/CommandFind.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandInfo.o src/mash/CommandInfo.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandPaste.o src/mash/CommandPaste.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandSketch.o src/mash/CommandSketch.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/CommandList.o src/mash/CommandList.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/hash.o src/mash/hash.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashList.o src/mash/HashList.cpp
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from src/mash/HashList.cpp:8:
/usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from src/mash/HashList.cpp:8:
/usr/include/c++/6/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In member function ‘void HashList::sort()’:
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashPriorityQueue.o src/mash/HashPriorityQueue.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/HashSet.o src/mash/HashSet.cpp
In file included from /usr/include/c++/6/queue:62:0,
from src/mash/HashPriorityQueue.h:11,
from src/mash/HashPriorityQueue.cpp:7:
/usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::less<long long unsigned int> >]’:
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >’ will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MinHashHeap.o src/mash/MinHashHeap.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/MurmurHash3.o src/mash/MurmurHash3.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/mash.o src/mash/mash.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/Sketch.o src/mash/Sketch.cpp
In file included from /usr/include/c++/6/queue:62:0,
from src/mash/HashPriorityQueue.h:11,
from src/mash/MinHashHeap.h:5,
from src/mash/MinHashHeap.cpp:2:
/usr/include/c++/6/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<std::less<long long unsigned int> >]’:
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/sketchParameterSetup.o src/mash/sketchParameterSetup.cpp
g++ -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o src/mash/capnp/MinHash.capnp.o src/mash/capnp/MinHash.capnp.c++
In file included from /usr/include/c++/6/vector:69:0,
from src/mash/Sketch.h:14,
from src/mash/Sketch.cpp:7:
/usr/include/c++/6/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >; _Tp = Sketch::Reference; _Alloc = std::allocator<Sketch::Reference>]’:
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type ‘std::vector<Sketch::Reference>::iterator {aka __gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >}’ will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ will change in GCC 7.1
/usr/include/c++/6/bits/vector.tcc:616:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from src/mash/Sketch.h:14,
from src/mash/Sketch.cpp:7:
/usr/include/c++/6/bits/stl_vector.h: In member function ‘void Sketch::useThreadOutput(Sketch::SketchOutput*)’:
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type ‘std::vector<Sketch::Reference>::iterator {aka __gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >}’ will change in GCC 7.1
_M_range_insert(__pos, __first, __last, _IterCategory());
^~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ will change in GCC 7.1
/usr/include/c++/6/bits/stl_vector.h:1375:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Sketch::Reference*, std::vector<Sketch::Reference> >’ will change in GCC 7.1
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Isrc -I/usr/include -I /usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -o mash src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/MurmurHash3.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o -lkj -lcapnp -L/usr/lib -lgsl -lgslcblas -lstdc++ -lz -lm -lpthread -Wl,-z,relro -Wl,-z,now
ar -cr libmash.a src/mash/Command.o src/mash/CommandBounds.o src/mash/CommandContain.o src/mash/CommandDistance.o src/mash/CommandFind.o src/mash/CommandInfo.o src/mash/CommandPaste.o src/mash/CommandSketch.o src/mash/CommandList.o src/mash/hash.o src/mash/HashList.o src/mash/HashPriorityQueue.o src/mash/HashSet.o src/mash/MinHashHeap.o src/mash/MurmurHash3.o src/mash/mash.o src/mash/Sketch.o src/mash/sketchParameterSetup.o src/mash/capnp/MinHash.capnp.o
ranlib libmash.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
sphinx-build doc/sphinx /<<PKGBUILDDIR>>/debian/sphinxdoc
Running Sphinx v1.5.6
making output directory...
loading pickled environment... not yet created
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 5 source files that are out of date
updating environment: 5 added, 0 changed, 0 removed
reading sources... [ 20%] data
reading sources... [ 40%] distances
reading sources... [ 60%] index
reading sources... [ 80%] sketches
reading sources... [100%] tutorials
/<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:9: ERROR: Unknown directive type "download".
.. download::
/<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:10: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/<<PKGBUILDDIR>>/doc/sphinx/tutorials.rst:66: ERROR: Unknown directive type "download".
.. download::
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 20%] data
writing output... [ 40%] distances
writing output... [ 60%] index
writing output... [ 80%] sketches
writing output... [100%] tutorials
generating indices... genindex
writing additional pages... search
copying images... [100%] logo_med.png
copying static files... WARNING: html_static_path entry u'/<<PKGBUILDDIR>>/doc/sphinx/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 4 warnings.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--parallel
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf,sphinxdoc --parallel
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
dh_auto_install -a -O--parallel
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/capnp
cp `pwd`/mash /<<PKGBUILDDIR>>/debian/tmp/usr/bin/
cp `pwd`/libmash.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/
cp `pwd`/src/mash/*.h /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/
cp `pwd`/src/mash/capnp/MinHash.capnp.h /<<PKGBUILDDIR>>/debian/tmp/usr/include/mash/capnp/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a -O--parallel
dh_installdocs -a -O--parallel
dh_sphinxdoc -a -O--parallel
dh_sphinxdoc: Sphinx documentation not found
dh_installchangelogs -a -O--parallel
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/man
asciidoctor -a docdate='' -b manpage /<<PKGBUILDDIR>>/debian/man_src/*.adoc
cp /<<PKGBUILDDIR>>/debian/man_src/*.? /<<PKGBUILDDIR>>/debian/man
dh_installman --
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_missing -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/mash/usr/bin/mash contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mash/usr/bin/mash was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: Depends field of package libmash-dev: unknown substitution variable ${shlibs:Depends}
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'mash' in '../mash_1.1.1-2+b1_armhf.deb'.
dpkg-deb: building package 'mash-dbgsym' in '../mash-dbgsym_1.1.1-2+b1_armhf.deb'.
dpkg-deb: building package 'libmash-dev' in '../libmash-dev_1.1.1-2+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../mash_1.1.1-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build mash-1.1.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-08-17T01:36:49Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
mash_1.1.1-2+b1_armhf.changes:
------------------------------
Format: 1.8
Date: Wed, 24 May 2017 08:43:17 +0000
Source: mash (1.1.1-2)
Binary: mash libmash-dev mash-doc
Binary-Only: yes
Architecture: armhf
Version: 1.1.1-2+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
libmash-dev - development headers and static library for Mash
mash - fast genome and metagenome distance estimation using MinHash
mash-doc - documentation for Mash
Changes:
mash (1.1.1-2+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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f16898d4886dc19e671cda84469d697e7cdaa64f 107228 mash_1.1.1-2+b1_armhf.deb
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Files:
5d787b7f6e924a2bac9d60318c80608f 138410 libdevel optional libmash-dev_1.1.1-2+b1_armhf.deb
cdb21f8f2527d28a2c171b1c46f8802c 1923064 debug extra mash-dbgsym_1.1.1-2+b1_armhf.deb
d285bd6ea693304008a891ef64a81059 107228 science optional mash_1.1.1-2+b1_armhf.deb
420c84c1fe224bd240f06cda0f8342b6 6737 science optional mash_1.1.1-2_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libmash-dev_1.1.1-2+b1_armhf.deb
--------------------------------
new debian package, version 2.0.
size 138410 bytes: control archive=1266 bytes.
479 bytes, 13 lines control
1717 bytes, 26 lines md5sums
Package: libmash-dev
Source: mash (1.1.1-2)
Version: 1.1.1-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 711
Section: libdevel
Priority: optional
Homepage: https://mash.readthedocs.io
Description: development headers and static library for Mash
This package contains C++ development headers and a static library to
build custom programs utilizing Mash, a MinHash based genome distance
estimator.
drwxr-xr-x root/root 0 2017-05-24 08:43 ./
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/include/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/include/mash/
-rw-r--r-- root/root 3452 2017-05-24 08:43 ./usr/include/mash/Command.h
-rw-r--r-- root/root 457 2017-05-24 08:43 ./usr/include/mash/CommandBounds.h
-rw-r--r-- root/root 2334 2017-05-24 08:43 ./usr/include/mash/CommandContain.h
-rw-r--r-- root/root 2837 2017-05-24 08:43 ./usr/include/mash/CommandDistance.h
-rw-r--r-- root/root 2334 2017-05-24 08:43 ./usr/include/mash/CommandFind.h
-rw-r--r-- root/root 582 2017-05-24 08:43 ./usr/include/mash/CommandInfo.h
-rw-r--r-- root/root 682 2017-05-24 08:43 ./usr/include/mash/CommandList.h
-rw-r--r-- root/root 478 2017-05-24 08:43 ./usr/include/mash/CommandPaste.h
-rw-r--r-- root/root 458 2017-05-24 08:43 ./usr/include/mash/CommandSketch.h
-rw-r--r-- root/root 1040 2017-05-24 08:43 ./usr/include/mash/HashList.h
-rw-r--r-- root/root 805 2017-05-24 08:43 ./usr/include/mash/HashPriorityQueue.h
-rw-r--r-- root/root 948 2017-05-24 08:43 ./usr/include/mash/HashSet.h
-rw-r--r-- root/root 1415 2017-05-24 08:43 ./usr/include/mash/MinHashHeap.h
-rw-r--r-- root/root 1109 2017-05-24 08:43 ./usr/include/mash/MurmurHash3.h
-rw-r--r-- root/root 7591 2017-05-24 08:43 ./usr/include/mash/Sketch.h
-rw-r--r-- root/root 1697 2017-05-24 08:43 ./usr/include/mash/ThreadPool.h
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/include/mash/capnp/
-rw-r--r-- root/root 48200 2017-05-24 08:43 ./usr/include/mash/capnp/MinHash.capnp.h
-rw-r--r-- root/root 603 2017-05-24 08:43 ./usr/include/mash/hash.h
-rw-r--r-- root/root 12437 2017-05-24 08:43 ./usr/include/mash/kseq.h
-rw-r--r-- root/root 301 2017-05-24 08:43 ./usr/include/mash/memcpyLink.h
-rw-r--r-- root/root 639 2017-05-24 08:43 ./usr/include/mash/sketchParameterSetup.h
-rw-r--r-- root/root 294 2017-05-24 08:43 ./usr/include/mash/version.h
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/
-rw-r--r-- root/root 595870 2017-05-24 08:43 ./usr/lib/libmash.a
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/libmash-dev/
-rw-r--r-- root/root 217 2017-05-24 08:43 ./usr/share/doc/libmash-dev/changelog.Debian.armhf.gz
-rw-r--r-- root/root 430 2017-05-24 08:43 ./usr/share/doc/libmash-dev/changelog.Debian.gz
-rw-r--r-- root/root 15529 2016-07-19 20:41 ./usr/share/doc/libmash-dev/copyright
mash-dbgsym_1.1.1-2+b1_armhf.deb
--------------------------------
new debian package, version 2.0.
size 1923064 bytes: control archive=459 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: mash-dbgsym
Source: mash (1.1.1-2)
Version: 1.1.1-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1940
Depends: mash (= 1.1.1-2+b1)
Section: debug
Priority: extra
Description: Debug symbols for mash
Build-Ids: 693cc3a01bff68d9dfae9670b08818589c053fda
drwxr-xr-x root/root 0 2017-05-24 08:43 ./
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/lib/debug/.build-id/69/
-rw-r--r-- root/root 1975364 2017-05-24 08:43 ./usr/lib/debug/.build-id/69/3cc3a01bff68d9dfae9670b08818589c053fda.debug
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-05-24 08:43 ./usr/share/doc/mash-dbgsym -> mash
mash_1.1.1-2+b1_armhf.deb
-------------------------
new debian package, version 2.0.
size 107228 bytes: control archive=1079 bytes.
1045 bytes, 19 lines control
600 bytes, 9 lines md5sums
Package: mash
Source: mash (1.1.1-2)
Version: 1.1.1-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 292
Depends: libc6 (>= 2.4), libcapnp-0.5.3, libgcc1 (>= 1:3.5), libgsl23, libgslcblas0, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://mash.readthedocs.io
Description: fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to
a representative sketch and rapidly estimate pairwise distances between
genomes or metagenomes. Mash sketch databases effectively delineate known
species boundaries, allow construction of approximate phylogenies, and can be
searched in seconds using assembled genomes or raw sequencing runs from
Illumina, Pacific Biosciences, and Oxford Nanopore.
For metagenomics, Mash scales to thousands of samples and can replicate Human
Microbiome Project and Global Ocean Survey results in a fraction of the time.
drwxr-xr-x root/root 0 2017-05-24 08:43 ./
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/bin/
-rwxr-xr-x root/root 263732 2017-05-24 08:43 ./usr/bin/mash
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/doc/mash/
-rw-r--r-- root/root 217 2017-05-24 08:43 ./usr/share/doc/mash/changelog.Debian.armhf.gz
-rw-r--r-- root/root 430 2017-05-24 08:43 ./usr/share/doc/mash/changelog.Debian.gz
-rw-r--r-- root/root 15529 2016-07-19 20:41 ./usr/share/doc/mash/copyright
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/man/
drwxr-xr-x root/root 0 2017-05-24 08:43 ./usr/share/man/man1/
-rw-r--r-- root/root 1673 2017-05-24 08:43 ./usr/share/man/man1/mash-dist.1.gz
-rw-r--r-- root/root 565 2017-05-24 08:43 ./usr/share/man/man1/mash-info.1.gz
-rw-r--r-- root/root 455 2017-05-24 08:43 ./usr/share/man/man1/mash-paste.1.gz
-rw-r--r-- root/root 1710 2017-05-24 08:43 ./usr/share/man/man1/mash-sketch.1.gz
-rw-r--r-- root/root 647 2017-05-24 08:43 ./usr/share/man/man1/mash.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 74336
Build-Time: 77
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 272
Job: mash_1.1.1-2
Machine Architecture: armhf
Package: mash
Package-Time: 377
Source-Version: 1.1.1-2
Space: 74336
Status: successful
Version: 1.1.1-2+b1
--------------------------------------------------------------------------------
Finished at 2017-08-17T01:36:49Z
Build needed 00:06:17, 74336k disk space