libvcflib →
1.0.2+dfsg-2 →
armhf → 2021-01-30 15:18:56
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| libvcflib 1.0.2+dfsg-2 (armhf) Sat, 30 Jan 2021 15:09:24 +0000 |
+==============================================================================+
Package: libvcflib
Version: 1.0.2+dfsg-2
Source Version: 1.0.2+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-a043938f-caf7-49e8-9cf7-9cd1ebf0f4cb' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.1 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.3 MB in 9s (2749 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libvcflib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libvcflib.git
Please use:
git clone https://salsa.debian.org/med-team/libvcflib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 7577 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.2+dfsg-2 (dsc) [2322 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.2+dfsg-2 (tar) [7566 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.2+dfsg-2 (diff) [9228 B]
Fetched 7577 kB in 1s (6568 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libvcflib-eUk5qD/libvcflib-1.0.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libvcflib-eUk5qD' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-1Hk1Ww/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-1Hk1Ww/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (9937 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (63.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12401 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libgtest-dev
Filtered Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libgtest-dev
dpkg-deb: building package 'sbuild-build-depends-libvcflib-dummy' in '/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive/sbuild-build-depends-libvcflib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libvcflib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Sources [618 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ Packages [685 B]
Fetched 2636 B in 0s (12.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libvcflib build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
googletest groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libbz2-dev libcurl3-gnutls libcurl4 libcurl4-gnutls-dev
libdebhelper-perl libdeflate-dev libdeflate0 libdisorder-dev libdisorder0
libelf1 libexpat1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgtest-dev
libhts-dev libhts3 libicu67 libjsoncpp24 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libncurses6 libnghttp2-14
libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2
libsmithwaterman-dev libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev
libssw0 libsub-override-perl libtabixpp-dev libtabixpp0 libtool libuchardet0
libuv1 libxml2 m4 man-db markdown pkg-config po-debconf procps zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev krb5-doc krb5-user liblzma-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2
publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
googletest groff-base intltool-debian libarchive-zip-perl libarchive13
libbrotli1 libbz2-dev libcurl3-gnutls libcurl4 libcurl4-gnutls-dev
libdebhelper-perl libdeflate-dev libdeflate0 libdisorder-dev libdisorder0
libelf1 libexpat1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgtest-dev
libhts-dev libhts3 libicu67 libjsoncpp24 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libncurses6 libnghttp2-14
libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsigsegv2
libsmithwaterman-dev libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev
libssw0 libsub-override-perl libtabixpp-dev libtabixpp0 libtool libuchardet0
libuv1 libxml2 m4 man-db markdown pkg-config po-debconf procps
sbuild-build-depends-libvcflib-dummy zlib1g-dev
0 upgraded, 76 newly installed, 0 to remove and 7 not upgraded.
Need to get 34.8 MB of archives.
After this operation, 127 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1Hk1Ww/apt_archive ./ sbuild-build-depends-libvcflib-dummy 0.invalid.0 [968 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.4-1+rpi1 [1725 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.18.3-4 [108 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1i-2 [1272 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.18.3-4 [315 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [142 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.74.0-1 [305 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp24 armhf 1.9.4-4 [67.0 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.1-1 [140 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.40.0-1 [118 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.4-1+rpi1+b1 [3111 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.10.0-1 [25.6 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.10.0-1 [15.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-3 [162 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210118-1 [163 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf googletest all 1.10.0.20201025-1.1 [629 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.74.0-1 [301 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libcurl4-gnutls-dev armhf 7.74.0-1 [375 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.7-1 [44.0 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libdeflate-dev armhf 1.7-1 [40.3 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-2 [4612 B]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-2 [4276 B]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libfastahack0 armhf 1.0.0+dfsg-7 [23.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libfastahack-dev armhf 1.0.0+dfsg-7 [26.5 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.4-1 [1182 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libgtest-dev armhf 1.10.0.20201025-1.1 [1388 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-4 [324 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.5-1.0 [219 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.11-4 [3815 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman0 armhf 0.0+git20160702.2610e25-11 [33.1 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman-dev armhf 0.0+git20160702.2610e25-11 [36.6 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libssw0 armhf 1.1-12 [20.9 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libssw-dev armhf 1.1-12 [23.9 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp0 armhf 1.1.0-3 [8204 B]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp-dev armhf 1.1.0-3 [7752 B]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf markdown all 1.0.1-10.1 [17.5 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-2) ...
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Setting up cmake-data (3.18.4-1+rpi1) ...
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Setting up m4 (1.4.18-5) ...
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Setting up autoconf (2.69-14) ...
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Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
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Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libcurl4-gnutls-dev:armhf (7.74.0-1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up cmake (3.18.4-1+rpi1+b1) ...
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Setting up libhts-dev:armhf (1.11-4) ...
Setting up libtabixpp0:armhf (1.1.0-3) ...
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Setting up debhelper (13.3.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-libvcflib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-9+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-7+rpi1 dpkg-dev_1.20.7.1+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.4-1+rpi1
Package versions: adduser_3.118 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-7+rpi1 binutils-arm-linux-gnueabihf_2.35.1-7+rpi1 binutils-common_2.35.1-7+rpi1 bsdextrautils_2.36.1-6 bsdutils_1:2.36.1-6 build-essential_12.9 bzip2_1.0.8-4 cmake_3.18.4-1+rpi1+b1 cmake-data_3.18.4-1+rpi1 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-5 dirmngr_2.2.20-1 dpkg_1.20.7.1+rpi1 dpkg-dev_1.20.7.1+rpi1 dwz_0.13+20210118-1 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-6 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gettext_0.21-3 gettext-base_0.21-3 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 googletest_1.10.0.20201025-1.1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-9 libapt-pkg6.0_2.1.18 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.1-7+rpi1 libblkid1_2.36.1-6 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-9+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.45.6-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-7+rpi1 libctf0_2.35.1-7+rpi1 libcurl3-gnutls_7.74.0-1 libcurl4_7.74.0-1 libcurl4-gnutls-dev_7.74.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.256 libdebhelper-perl_13.3.1 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdisorder-dev_0.0.2+git20130809.8062ee1-2 libdisorder0_0.0.2+git20130809.8062ee1-2 libdpkg-perl_1.20.7.1+rpi1 libelf1_0.182-3 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfastahack-dev_1.0.0+dfsg-7 libfastahack0_1.0.0+dfsg-7 libfdisk1_2.36.1-6 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.10.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.66.4-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libgtest-dev_1.10.0.20201025-1.1 libhogweed6_3.6-2 libhts-dev_1.11-4 libhts3_1.11-4 libicu67_67.1-6 libidn2-0_2.3.0-5 libisl23_0.23-1 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.3-1+rpi1 liblzma-dev_5.2.5-1.0 liblzma5_5.2.5-1.0 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-6 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libp11-kit0_0.23.22-1 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.4.0-2 libpam0g_1.4.0-2 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libreadline8_8.1-1 librhash0_1.4.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-6 libsmithwaterman-dev_0.0+git20160702.2610e25-11 libsmithwaterman0_0.0+git20160702.2610e25-11 libsqlite3-0_3.34.1-1 libss2_1.45.6-1 libssh2-1_1.9.0-2 libssl1.1_1.1.1i-2 libssw-dev_1.1-12 libssw0_1.1-12 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.2-5+rpi1 libtabixpp-dev_1.1.0-3 libtabixpp0_1.1.0-3 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.2-5+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-6 libuv1_1.40.0-1 libxml2_2.9.10+dfsg-6.3 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.10.4-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4 man-db_2.9.3-2 markdown_1.0.1-10.1 mawk_1.3.4.20200120-2 mount_2.36.1-6 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.16-5 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libvcflib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020f-1 util-linux_2.36.1-6 xz-utils_5.2.5-1.0 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.qXFeKBn1/trustedkeys.kbx': General error
gpgv: Signature made Thu Jan 28 12:04:01 2021 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libvcflib_1.0.2+dfsg-2.dsc
dpkg-source: info: extracting libvcflib in /<<BUILDDIR>>/libvcflib-1.0.2+dfsg
dpkg-source: info: unpacking libvcflib_1.0.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking libvcflib_1.0.2+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling
dpkg-source: info: applying no_fsom
dpkg-source: info: applying use_debian_packaged_smithwaterman.patch
dpkg-source: info: applying use_debian_packaged_fastahack.patch
dpkg-source: info: applying use_debian_packaged_libssw.patch
dpkg-source: info: applying shared_lib.patch
dpkg-source: info: applying pkg-config.patch
dpkg-source: info: applying hardening-flags
dpkg-source: info: applying tabix_linking
dpkg-source: info: applying tests
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-a043938f-caf7-49e8-9cf7-9cd1ebf0f4cb
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libvcflib
dpkg-buildpackage: info: source version 1.0.2+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_auto_clean || true
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_autoreconf_clean -O--buildsystem=cmake
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_clean
find . -name "*.o" -delete
rm -f README.html
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
debian/rules binary-arch
dh binary-arch --buildsystem cmake
dh_update_autotools_config -a -O--buildsystem=cmake
dh_autoreconf -a -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_auto_configure -- -DOPENMP=ON
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DOPENMP=ON ..
-- The C compiler identification is GNU 10.2.1
-- The CXX compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2")
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabihf/liblzma.so
-- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabihf/liblzma.so - found
-- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabihf/liblzma.so
-- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabihf/liblzma.so - found
-- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabihf/liblzma.so
-- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabihf/liblzma.so - found
-- Found LibLZMA: /usr/lib/arm-linux-gnueabihf/liblzma.so (found version "5.2.5")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
--
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Checking for module 'htslib'
-- Found htslib, version 1.11-4
-- Checking for module 'tabixpp'
-- No package 'tabixpp' found
-- Checking for module 'libsmithwaterman'
-- Found libsmithwaterman, version 0.0
-- Checking for module 'libfastahack'
-- Found libfastahack, version 0.0
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
Pandoc needs to be installed to generate the man pages
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_auto_build
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/libvcflib-1.0.2+dfsg -B/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflib.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflib.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflib.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflib.dir/depend.internal".
Scanning dependencies of target vcflib
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object CMakeFiles/vcflib.dir/src/Variant.cpp.o
[ 1%] Building CXX object CMakeFiles/vcflib.dir/src/rnglib.cpp.o
[ 1%] Building CXX object CMakeFiles/vcflib.dir/src/pdflib.cpp.o
[ 2%] Building CXX object CMakeFiles/vcflib.dir/src/var.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -Dvcflib_EXPORTS -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -o CMakeFiles/vcflib.dir/src/Variant.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.cpp
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -Dvcflib_EXPORTS -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -o CMakeFiles/vcflib.dir/src/rnglib.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/rnglib.cpp
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -Dvcflib_EXPORTS -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -o CMakeFiles/vcflib.dir/src/pdflib.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/pdflib.cpp
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -Dvcflib_EXPORTS -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -o CMakeFiles/vcflib.dir/src/var.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.cpp
[ 3%] Building CXX object CMakeFiles/vcflib.dir/src/cdflib.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -Dvcflib_EXPORTS -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -o CMakeFiles/vcflib.dir/src/cdflib.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/cdflib.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.hpp:17,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.cpp:20:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
[ 3%] Building CXX object CMakeFiles/vcflib.dir/src/split.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -Dvcflib_EXPORTS -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -o CMakeFiles/vcflib.dir/src/split.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.cpp
/usr/include/c++/10/bits/vector.tcc: In member function 'virtual void genotype::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.hpp:17,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.cpp:20:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.hpp:17,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.cpp:20:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.hpp:17,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.cpp:20:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual void pooled::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.hpp:17,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/var.cpp:20:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 4%] Building C object CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o
/usr/bin/cc -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -Dvcflib_EXPORTS -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp/filevercmp.c
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make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/depend
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cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfinfosummarize.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsample2info.dir/DependInfo.cmake --color=
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Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsample2info.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfglbound.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfinfosummarize.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2dag.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2dag.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2dag.dir/depend.internal".
Scanning dependencies of target vcfsample2info
Scanning dependencies of target vcfglbound
Scanning dependencies of target vcfinfosummarize
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make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/build
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/build
make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/build
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
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[ 6%] Building CXX object CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o
[ 6%] Building CXX object CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o
[ 6%] Building CXX object CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfsample2info.cpp
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfinfosummarize.cpp
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfglbound.cpp
[ 7%] Building CXX object CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcf2dag.cpp
In file included from /usr/include/c++/10/queue:62,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:23,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfsample2info.cpp:10:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/queue:62,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:23,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfinfosummarize.cpp:10:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfglbound.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfsample2info.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfglbound.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfinfosummarize.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfsample2info.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfinfosummarize.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 8%] Linking CXX executable vcfglbound
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglbound.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -o vcfglbound -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 8%] Built target vcfglbound
make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfindex.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfindex.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfindex.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfindex.dir/depend.internal".
Scanning dependencies of target vcfindex
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 9%] Building CXX object CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfindex.cpp
[ 9%] Linking CXX executable vcfsample2info
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsample2info.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -o vcfsample2info -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 9%] Built target vcfsample2info
make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/depend
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cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenosummarize.dir/DependInfo.cmake --color=
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Scanning dependencies of target vcfgenosummarize
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 10%] Building CXX object CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgenosummarize.cpp
[ 11%] Linking CXX executable vcfinfosummarize
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfosummarize.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -o vcfinfosummarize -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
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make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgeno2haplo.dir/DependInfo.cmake --color=
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Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgeno2haplo.dir/depend.internal".
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 12%] Building CXX object CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgeno2haplo.cpp
[ 12%] Linking CXX executable vcf2dag
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2dag.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -o vcf2dag -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 12%] Built target vcf2dag
make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/depend
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cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfevenregions.dir/DependInfo.cmake --color=
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/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfevenregions.cpp
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/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfindex.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -o vcfindex -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
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make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/depend
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[ 14%] Building CXX object CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcreatemulti.cpp
[ 15%] Linking CXX executable vcfgenosummarize
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosummarize.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -o vcfgenosummarize -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 15%] Built target vcfgenosummarize
make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfbreakmulti.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfbreakmulti.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfbreakmulti.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfbreakmulti.dir/depend.internal".
Scanning dependencies of target vcfbreakmulti
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 15%] Building CXX object CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfbreakmulti.cpp
[ 15%] Linking CXX executable vcfevenregions
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfevenregions.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -o vcfevenregions -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 15%] Built target vcfevenregions
make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2fasta.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2fasta.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2fasta.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2fasta.dir/depend.internal".
Scanning dependencies of target vcf2fasta
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 16%] Building CXX object CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcf2fasta.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgeno2haplo.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgeno2haplo.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcreatemulti.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcreatemulti.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfbreakmulti.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfbreakmulti.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 17%] Linking CXX executable vcfcreatemulti
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcreatemulti.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -o vcfcreatemulti -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 18%] Linking CXX executable vcfbreakmulti
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfbreakmulti.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -o vcfbreakmulti -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Built target vcfcreatemulti
make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremap.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremap.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremap.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremap.dir/depend.internal".
Scanning dependencies of target vcfremap
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Building CXX object CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfremap.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Built target vcfbreakmulti
make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniqalleles.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniqalleles.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniqalleles.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniqalleles.dir/depend.internal".
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make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 19%] Building CXX object CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfuniqalleles.cpp
[ 19%] Linking CXX executable vcf2fasta
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2fasta.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -o vcf2fasta -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 19%] Linking CXX executable vcfgeno2haplo
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2haplo.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -o vcfgeno2haplo -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 19%] Built target vcf2fasta
make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniq.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniq.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniq.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfuniq.dir/depend.internal".
Scanning dependencies of target vcfuniq
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 20%] Building CXX object CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfuniq.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 20%] Built target vcfgeno2haplo
make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcheck.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcheck.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcheck.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcheck.dir/depend.internal".
Scanning dependencies of target vcfcheck
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 20%] Building CXX object CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcheck.cpp
[ 20%] Linking CXX executable vcfuniqalleles
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniqalleles.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -o vcfuniqalleles -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 20%] Built target vcfuniqalleles
make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcombine.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcombine.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcombine.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcombine.dir/depend.internal".
Scanning dependencies of target vcfcombine
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 21%] Building CXX object CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcombine.cpp
[ 21%] Linking CXX executable vcfuniq
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniq.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -o vcfuniq -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 21%] Built target vcfuniq
make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfroc.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfroc.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfroc.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfroc.dir/depend.internal".
Scanning dependencies of target vcfroc
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 22%] Building CXX object CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfroc.cpp
[ 23%] Linking CXX executable vcfcheck
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcheck.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -o vcfcheck -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 23%] Built target vcfcheck
make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypes.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypes.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypes.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypes.dir/depend.internal".
Scanning dependencies of target vcfgenotypes
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 23%] Building CXX object CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgenotypes.cpp
[ 24%] Linking CXX executable vcfremap
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremap.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -o vcfremap -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 24%] Built target vcfremap
make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfqual2info.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfqual2info.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfqual2info.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfqual2info.dir/depend.internal".
Scanning dependencies of target vcfqual2info
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 25%] Building CXX object CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfqual2info.cpp
[ 26%] Linking CXX executable vcfgenotypes
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypes.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -o vcfgenotypes -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfroc.cpp:10:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long double&&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 26%] Built target vcfgenotypes
make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstreamsort.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstreamsort.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstreamsort.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstreamsort.dir/depend.internal".
Scanning dependencies of target vcfstreamsort
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 26%] Building CXX object CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfstreamsort.cpp
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long double&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfroc.cpp:10:
/usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector<vcflib::VariantAllele*>; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 26%] Linking CXX executable vcfqual2info
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfqual2info.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -o vcfqual2info -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 26%] Built target vcfqual2info
make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/abba-baba.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/abba-baba.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/abba-baba.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/abba-baba.dir/depend.internal".
Scanning dependencies of target abba-baba
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 26%] Building CXX object CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/abba-baba.cpp
[ 26%] Linking CXX executable vcfcombine
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcombine.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -o vcfcombine -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 26%] Built target vcfcombine
make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentFst.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentFst.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentFst.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentFst.dir/depend.internal".
Scanning dependencies of target segmentFst
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 26%] Building CXX object CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/segmentFst.cpp
/usr/include/c++/10/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfstreamsort.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfstreamsort.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/segmentFst.cpp:59:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 27%] Linking CXX executable segmentFst
/usr/bin/cmake -E cmake_link_script CMakeFiles/segmentFst.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -o segmentFst -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 27%] Built target segmentFst
make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhethomratio.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhethomratio.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhethomratio.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhethomratio.dir/depend.internal".
Scanning dependencies of target vcfhethomratio
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 28%] Building CXX object CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfhethomratio.cpp
[ 29%] Linking CXX executable vcfstreamsort
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstreamsort.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -o vcfstreamsort -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 29%] Built target vcfstreamsort
make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/meltEHH.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/meltEHH.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/meltEHH.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/meltEHH.dir/depend.internal".
Scanning dependencies of target meltEHH
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 30%] Building CXX object CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/meltEHH.cpp
[ 31%] Linking CXX executable abba-baba
/usr/bin/cmake -E cmake_link_script CMakeFiles/abba-baba.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -o abba-baba -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 31%] Linking CXX executable vcfroc
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfroc.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -o vcfroc -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 31%] Built target abba-baba
make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcffilter.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcffilter.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcffilter.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcffilter.dir/depend.internal".
Scanning dependencies of target vcffilter
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 32%] Building CXX object CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcffilter.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 32%] Built target vcfroc
make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfclassify.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfclassify.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfclassify.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfclassify.dir/depend.internal".
Scanning dependencies of target vcfclassify
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 33%] Building CXX object CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfclassify.cpp
[ 33%] Linking CXX executable vcfhethomratio
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhethomratio.dir/link.txt --verbose=1
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/meltEHH.cpp:10:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -o vcfhethomratio -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 33%] Built target vcfhethomratio
make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaddinfo.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaddinfo.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaddinfo.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaddinfo.dir/depend.internal".
Scanning dependencies of target vcfaddinfo
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 33%] Building CXX object CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfaddinfo.cpp
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/meltEHH.cpp:10:
/usr/include/c++/10/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 33%] Linking CXX executable vcfclassify
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfclassify.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -o vcfclassify -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/meltEHH.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 33%] Built target vcfclassify
make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenosamplenames.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenosamplenames.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenosamplenames.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenosamplenames.dir/depend.internal".
Scanning dependencies of target vcfgenosamplenames
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 34%] Building CXX object CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgenosamplenames.cpp
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/meltEHH.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 35%] Linking CXX executable vcfaddinfo
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaddinfo.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -o vcfaddinfo -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 35%] Built target vcfaddinfo
make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaltcount.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaltcount.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaltcount.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfaltcount.dir/depend.internal".
Scanning dependencies of target vcfaltcount
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 36%] Building CXX object CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfaltcount.cpp
[ 37%] Linking CXX executable meltEHH
/usr/bin/cmake -E cmake_link_script CMakeFiles/meltEHH.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -o meltEHH -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 38%] Linking CXX executable vcffilter
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcffilter.dir/link.txt --verbose=1
[ 38%] Built target meltEHH
make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/depend
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -o vcffilter -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhetcount.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhetcount.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhetcount.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfhetcount.dir/depend.internal".
Scanning dependencies of target vcfhetcount
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 39%] Building CXX object CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfhetcount.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 39%] Built target vcffilter
make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pFst.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pFst.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pFst.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pFst.dir/depend.internal".
Scanning dependencies of target pFst
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 39%] Building CXX object CMakeFiles/pFst.dir/src/pFst.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/pFst.dir/src/pFst.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/pFst.cpp
[ 39%] Linking CXX executable vcfgenosamplenames
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosamplenames.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -o vcfgenosamplenames -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 39%] Built target vcfgenosamplenames
make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plotHaps.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plotHaps.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plotHaps.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/plotHaps.dir/depend.internal".
Scanning dependencies of target plotHaps
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Building CXX object CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/plotHaps.cpp
[ 40%] Linking CXX executable vcfaltcount
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaltcount.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -o vcfaltcount -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Built target vcfaltcount
make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfinfo2qual.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfinfo2qual.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfinfo2qual.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfinfo2qual.dir/depend.internal".
Scanning dependencies of target vcfinfo2qual
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Building CXX object CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfinfo2qual.cpp
[ 40%] Linking CXX executable vcfhetcount
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhetcount.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -o vcfhetcount -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Built target vcfhetcount
make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfld.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfld.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfld.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfld.dir/depend.internal".
Scanning dependencies of target vcfld
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 41%] Building CXX object CMakeFiles/vcfld.dir/src/vcfld.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfld.dir/src/vcfld.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfld.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/plotHaps.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 42%] Linking CXX executable vcfinfo2qual
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfo2qual.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -o vcfinfo2qual -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 42%] Built target vcfinfo2qual
make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/smoother.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/plotHaps.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/smoother.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/smoother.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/smoother.dir/depend.internal".
Scanning dependencies of target smoother
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 43%] Building CXX object CMakeFiles/smoother.dir/src/smoother.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/smoother.dir/src/smoother.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/smoother.cpp
[ 44%] Linking CXX executable pFst
/usr/bin/cmake -E cmake_link_script CMakeFiles/pFst.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pFst.dir/src/pFst.cpp.o -o pFst -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 44%] Built target pFst
make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremovesamples.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremovesamples.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremovesamples.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremovesamples.dir/depend.internal".
Scanning dependencies of target vcfremovesamples
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 44%] Building CXX object CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfremovesamples.cpp
[ 44%] Linking CXX executable plotHaps
/usr/bin/cmake -E cmake_link_script CMakeFiles/plotHaps.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -o plotHaps -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 44%] Built target plotHaps
make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfprimers.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfprimers.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfprimers.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfprimers.dir/depend.internal".
Scanning dependencies of target vcfprimers
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Building CXX object CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfprimers.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfld.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfld.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 45%] Linking CXX executable smoother
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoother.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/smoother.dir/src/smoother.cpp.o -o smoother -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Built target smoother
make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandom.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandom.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandom.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandom.dir/depend.internal".
Scanning dependencies of target vcfrandom
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 46%] Building CXX object CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfrandom.cpp
[ 47%] Linking CXX executable vcfremovesamples
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremovesamples.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -o vcfremovesamples -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 47%] Built target vcfremovesamples
make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/iHS.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/iHS.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/iHS.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/iHS.dir/depend.internal".
Scanning dependencies of target iHS
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 48%] Building CXX object CMakeFiles/iHS.dir/src/iHS.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/iHS.dir/src/iHS.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/iHS.cpp
[ 48%] Linking CXX executable vcfprimers
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfprimers.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -o vcfprimers -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 48%] Built target vcfprimers
make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepgeno.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepgeno.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepgeno.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepgeno.dir/depend.internal".
Scanning dependencies of target vcfkeepgeno
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 49%] Building CXX object CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfkeepgeno.cpp
[ 50%] Linking CXX executable vcfld
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfld.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfld.dir/src/vcfld.cpp.o -o vcfld -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Built target vcfld
make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfafpath.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfafpath.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfafpath.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfafpath.dir/depend.internal".
Scanning dependencies of target vcfafpath
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfafpath.cpp
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/iHS.cpp:10:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Linking CXX executable vcfrandom
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandom.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -o vcfrandom -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Built target vcfrandom
make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfecho.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfecho.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfecho.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfecho.dir/depend.internal".
Scanning dependencies of target vcfecho
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 51%] Building CXX object CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfecho.cpp
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/iHS.cpp:10:
/usr/include/c++/10/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfafpath.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/iHS.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX executable vcfkeepgeno
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepgeno.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -o vcfkeepgeno -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfafpath.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 51%] Built target vcfkeepgeno
make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/genotypeSummary.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/genotypeSummary.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/genotypeSummary.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/genotypeSummary.dir/depend.internal".
Scanning dependencies of target genotypeSummary
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 52%] Building CXX object CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/genotypeSummary.cpp
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/iHS.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 53%] Linking CXX executable vcfafpath
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfafpath.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -o vcfafpath -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 53%] Linking CXX executable vcfecho
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfecho.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -o vcfecho -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Built target vcfafpath
make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsitesummarize.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsitesummarize.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsitesummarize.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsitesummarize.dir/depend.internal".
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make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Building CXX object CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfsitesummarize.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Built target vcfecho
make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcommonsamples.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcommonsamples.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcommonsamples.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcommonsamples.dir/depend.internal".
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make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 54%] Building CXX object CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcommonsamples.cpp
[ 54%] Linking CXX executable iHS
/usr/bin/cmake -E cmake_link_script CMakeFiles/iHS.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/iHS.dir/src/iHS.cpp.o -o iHS -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 54%] Built target iHS
make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/bFst.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/bFst.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/bFst.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/bFst.dir/depend.internal".
Scanning dependencies of target bFst
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 54%] Building CXX object CMakeFiles/bFst.dir/src/bFst.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/bFst.dir/src/bFst.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/bFst.cpp
[ 55%] Linking CXX executable vcfcommonsamples
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcommonsamples.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -o vcfcommonsamples -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 56%] Linking CXX executable vcfsitesummarize
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsitesummarize.dir/link.txt --verbose=1
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -o vcfsitesummarize -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 56%] Built target vcfcommonsamples
make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfentropy.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfentropy.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfentropy.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfentropy.dir/depend.internal".
Scanning dependencies of target vcfentropy
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 57%] Building CXX object CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfentropy.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 57%] Built target vcfsitesummarize
make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteSmooth.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteSmooth.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteSmooth.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteSmooth.dir/depend.internal".
Scanning dependencies of target permuteSmooth
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Building CXX object CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/permuteSmooth.cpp
[ 58%] Linking CXX executable genotypeSummary
/usr/bin/cmake -E cmake_link_script CMakeFiles/genotypeSummary.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -o genotypeSummary -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/bFst.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/bFst.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function 'void phardy(std::vector<double>&, double, double)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Built target genotypeSummary
make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremoveaberrantgenotypes.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremoveaberrantgenotypes.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremoveaberrantgenotypes.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfremoveaberrantgenotypes.dir/depend.internal".
Scanning dependencies of target vcfremoveaberrantgenotypes
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Building CXX object CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfremoveaberrantgenotypes.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/bFst.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/permuteSmooth.cpp:49:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/permuteSmooth.cpp:49:
/usr/include/c++/10/bits/stl_vector.h: In function 'bool getContiguousWindow(std::vector<score*>&, std::vector<double>&, int, int*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function 'void loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, pop&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 58%] Linking CXX executable permuteSmooth
/usr/bin/cmake -E cmake_link_script CMakeFiles/permuteSmooth.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -o permuteSmooth -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Built target permuteSmooth
make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pVst.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pVst.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pVst.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/pVst.dir/depend.internal".
Scanning dependencies of target pVst
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Building CXX object CMakeFiles/pVst.dir/src/pVst.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/pVst.dir/src/pVst.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/pVst.cpp
[ 58%] Linking CXX executable vcfentropy
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfentropy.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -o vcfentropy -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Built target vcfentropy
make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteGPAT++.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteGPAT++.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteGPAT++.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/permuteGPAT++.dir/depend.internal".
Scanning dependencies of target permuteGPAT++
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 59%] Building CXX object CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/permuteGPAT++.cpp
[ 60%] Linking CXX executable bFst
/usr/bin/cmake -E cmake_link_script CMakeFiles/bFst.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bFst.dir/src/bFst.cpp.o -o bFst -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 60%] Built target bFst
make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/dumpContigsFromHeader.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/dumpContigsFromHeader.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/dumpContigsFromHeader.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/dumpContigsFromHeader.dir/depend.internal".
Scanning dependencies of target dumpContigsFromHeader
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 60%] Building CXX object CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/dumpContigsFromHeader.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/permuteGPAT++.cpp:49:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX executable vcfremoveaberrantgenotypes
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremoveaberrantgenotypes.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -o vcfremoveaberrantgenotypes -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/permuteGPAT++.cpp:49:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 61%] Built target vcfremoveaberrantgenotypes
make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypecompare.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypecompare.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypecompare.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgenotypecompare.dir/depend.internal".
Scanning dependencies of target vcfgenotypecompare
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 61%] Building CXX object CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgenotypecompare.cpp
[ 61%] Linking CXX executable permuteGPAT++
/usr/bin/cmake -E cmake_link_script CMakeFiles/permuteGPAT++.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -o permuteGPAT++ -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 61%] Built target permuteGPAT++
make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfflatten.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfflatten.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfflatten.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfflatten.dir/depend.internal".
Scanning dependencies of target vcfflatten
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 61%] Building CXX object CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfflatten.cpp
[ 62%] Linking CXX executable dumpContigsFromHeader
/usr/bin/cmake -E cmake_link_script CMakeFiles/dumpContigsFromHeader.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -o dumpContigsFromHeader -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 62%] Built target dumpContigsFromHeader
make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfannotate.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfannotate.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfannotate.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfannotate.dir/depend.internal".
Scanning dependencies of target vcfannotate
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 63%] Building CXX object CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfannotate.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/pVst.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/pVst.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'void calc(copyNcounts*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/pVst.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function 'void loadDat(copyNcounts*, std::string&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Linking CXX executable pVst
/usr/bin/cmake -E cmake_link_script CMakeFiles/pVst.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pVst.dir/src/pVst.cpp.o -o pVst -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 64%] Built target pVst
make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hapLrt.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hapLrt.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hapLrt.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/hapLrt.dir/depend.internal".
Scanning dependencies of target hapLrt
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 65%] Building CXX object CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/hapLrt.cpp
[ 66%] Linking CXX executable vcfflatten
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfflatten.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -o vcfflatten -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 66%] Built target vcfflatten
make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepsamples.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepsamples.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepsamples.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepsamples.dir/depend.internal".
Scanning dependencies of target vcfkeepsamples
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 67%] Building CXX object CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfkeepsamples.cpp
[ 68%] Linking CXX executable vcfgenotypecompare
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypecompare.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -o vcfgenotypecompare -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Built target vcfgenotypecompare
make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/normalize-iHS.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/normalize-iHS.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/normalize-iHS.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/normalize-iHS.dir/depend.internal".
Scanning dependencies of target normalize-iHS
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/normalize-iHS.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/hapLrt.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 68%] Linking CXX executable vcfkeepsamples
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepsamples.dir/link.txt --verbose=1
[ 68%] Linking CXX executable vcfannotate
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotate.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -o vcfkeepsamples -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -o vcfannotate -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Built target vcfkeepsamples
make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2tsv.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2tsv.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2tsv.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcf2tsv.dir/depend.internal".
Scanning dependencies of target vcf2tsv
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Built target vcfannotate
make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/popStats.dir/DependInfo.cmake --color=
[ 69%] Building CXX object CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcf2tsv.cpp
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/popStats.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/popStats.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/popStats.dir/depend.internal".
Scanning dependencies of target popStats
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Building CXX object CMakeFiles/popStats.dir/src/popStats.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/popStats.dir/src/popStats.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/popStats.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/normalize-iHS.cpp:59:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/normalize-iHS.cpp:59:
/usr/include/c++/10/bits/stl_vector.h: In function 'void normalize(std::vector<iHSdat*>&, int*)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/hapLrt.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 71%] Linking CXX executable normalize-iHS
/usr/bin/cmake -E cmake_link_script CMakeFiles/normalize-iHS.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -o normalize-iHS -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 71%] Built target normalize-iHS
make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcat.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcat.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcat.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcat.dir/depend.internal".
Scanning dependencies of target vcfcat
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 71%] Building CXX object CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcat.cpp
[ 71%] Linking CXX executable hapLrt
/usr/bin/cmake -E cmake_link_script CMakeFiles/hapLrt.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -o hapLrt -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 71%] Built target hapLrt
make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/sequenceDiversity.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/sequenceDiversity.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/sequenceDiversity.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/sequenceDiversity.dir/depend.internal".
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 71%] Building CXX object CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/sequenceDiversity.cpp
[ 72%] Linking CXX executable vcfcat
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcat.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -o vcfcat -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Built target vcfcat
make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplenames.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplenames.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplenames.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplenames.dir/depend.internal".
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 73%] Building CXX object CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfsamplenames.cpp
[ 74%] Linking CXX executable vcf2tsv
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2tsv.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -o vcf2tsv -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 74%] Built target vcf2tsv
make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcffixup.dir/DependInfo.cmake --color=
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Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcffixup.dir/depend.internal".
Scanning dependencies of target vcffixup
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 74%] Building CXX object CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcffixup.cpp
[ 75%] Linking CXX executable popStats
/usr/bin/cmake -E cmake_link_script CMakeFiles/popStats.dir/link.txt --verbose=1
[ 76%] Linking CXX executable vcfsamplenames
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplenames.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/popStats.dir/src/popStats.cpp.o -o popStats -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -o vcfsamplenames -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplediff.dir/DependInfo.cmake --color=
[ 76%] Built target popStats
make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfparsealts.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplediff.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplediff.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfsamplediff.dir/depend.internal".
Scanning dependencies of target vcfsamplediff
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfparsealts.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfparsealts.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfparsealts.dir/depend.internal".
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
Scanning dependencies of target vcfparsealts
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Building CXX object CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o
[ 77%] Building CXX object CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfsamplediff.cpp
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfparsealts.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/sequenceDiversity.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/sequenceDiversity.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 78%] Linking CXX executable vcfparsealts
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfparsealts.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -o vcfparsealts -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target vcfparsealts
make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstats.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstats.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstats.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfstats.dir/depend.internal".
Scanning dependencies of target vcfstats
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfstats.cpp
[ 79%] Linking CXX executable vcffixup
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcffixup.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -o vcffixup -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Built target vcffixup
make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfnumalt.dir/DependInfo.cmake --color=
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Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfnumalt.dir/depend.internal".
Scanning dependencies of target vcfnumalt
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Building CXX object CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfnumalt.cpp
[ 80%] Linking CXX executable sequenceDiversity
/usr/bin/cmake -E cmake_link_script CMakeFiles/sequenceDiversity.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -o sequenceDiversity -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 80%] Built target sequenceDiversity
make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/wcFst.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 81%] Building CXX object CMakeFiles/wcFst.dir/src/wcFst.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/wcFst.dir/src/wcFst.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/wcFst.cpp
[ 81%] Linking CXX executable vcfsamplediff
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplediff.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -o vcfsamplediff -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 81%] Built target vcfsamplediff
make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcleancomplex.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 82%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcleancomplex.cpp
[ 83%] Linking CXX executable vcfnumalt
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnumalt.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -o vcfnumalt -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target vcfnumalt
make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfleftalign.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfleftalign.cpp
[ 83%] Linking CXX executable vcfcleancomplex
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcleancomplex.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -o vcfcleancomplex -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target vcfcleancomplex
make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfglxgt.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfglxgt.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfglxgt.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfglxgt.dir/depend.internal".
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make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Building CXX object CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfglxgt.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfleftalign.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function 'double entropy(const string&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 85%] Linking CXX executable wcFst
/usr/bin/cmake -E cmake_link_script CMakeFiles/wcFst.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/wcFst.dir/src/wcFst.cpp.o -o wcFst -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Built target wcFst
make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfintersect.dir/DependInfo.cmake --color=
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Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfintersect.dir/depend.internal".
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make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Building CXX object CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfintersect.cpp
[ 86%] Linking CXX executable vcfstats
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstats.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -o vcfstats -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 86%] Built target vcfstats
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/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfoverlay.cpp
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfallelicprimitives.cpp:10:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long unsigned int&&>, std::tuple<>}; _Key = long unsigned int; _Val = std::pair<const long unsigned int, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >; _Compare = std::less<long unsigned int>; _Alloc = std::allocator<std::pair<const long unsigned int, vcflib::Variant> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfallelicprimitives.cpp:10:
/usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = long unsigned int; _Tp = vcflib::Variant; _Compare = std::less<long unsigned int>; _Alloc = std::allocator<std::pair<const long unsigned int, vcflib::Variant> >]':
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfannotategenotypes.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfallelicprimitives.cpp:10:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const vcflib::VariantAllele&>, std::tuple<>}; _Key = vcflib::VariantAllele; _Val = std::pair<const vcflib::VariantAllele, double>; _KeyOfValue = std::_Select1st<std::pair<const vcflib::VariantAllele, double> >; _Compare = std::less<vcflib::VariantAllele>; _Alloc = std::allocator<std::pair<const vcflib::VariantAllele, double> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfallelicprimitives.cpp:10:
/usr/include/c++/10/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = vcflib::VariantAllele; _Tp = double; _Compare = std::less<vcflib::VariantAllele>; _Alloc = std::allocator<std::pair<const vcflib::VariantAllele, double> >]':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfannotategenotypes.cpp:10:
/usr/include/c++/10/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&&>, std::tuple<>}; _Key = std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; _Val = std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >; _Compare = std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >]':
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:13,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfannotategenotypes.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/Variant.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfannotategenotypes.cpp:10:
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' changed in GCC 7.1
520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
521 | std::forward_as_tuple(std::move(__k)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
522 | std::tuple<>());
| ~~~~~~~~~~~~~~~
[ 90%] Linking CXX executable vcfoverlay
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfoverlay.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -o vcfoverlay -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 90%] Built target vcfoverlay
make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepinfo.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepinfo.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepinfo.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfkeepinfo.dir/depend.internal".
Scanning dependencies of target vcfkeepinfo
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfkeepinfo.cpp
[ 92%] Linking CXX executable vcfintersect
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfintersect.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -o vcfintersect -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 92%] Built target vcfintersect
make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgeno2alleles.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgeno2alleles.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgeno2alleles.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfgeno2alleles.dir/depend.internal".
Scanning dependencies of target vcfgeno2alleles
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 93%] Building CXX object CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfgeno2alleles.cpp
[ 94%] Linking CXX executable vcfannotategenotypes
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotategenotypes.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -o vcfannotategenotypes -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 94%] Linking CXX executable vcfallelicprimitives
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfallelicprimitives.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -o vcfallelicprimitives -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Built target vcfannotategenotypes
make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcountalleles.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcountalleles.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcountalleles.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfcountalleles.dir/depend.internal".
[ 94%] Linking CXX executable vcfkeepinfo
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepinfo.dir/link.txt --verbose=1
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make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -o vcfkeepinfo -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
[ 94%] Building CXX object CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfcountalleles.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Built target vcfallelicprimitives
make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfdistance.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfdistance.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfdistance.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfdistance.dir/depend.internal".
Scanning dependencies of target vcfdistance
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make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Building CXX object CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfdistance.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Built target vcfkeepinfo
make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflength.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflength.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflength.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcflength.dir/depend.internal".
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make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Building CXX object CMakeFiles/vcflength.dir/src/vcflength.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcflength.dir/src/vcflength.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcflength.cpp
[ 94%] Linking CXX executable vcfgeno2alleles
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2alleles.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -o vcfgeno2alleles -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Built target vcfgeno2alleles
make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentIhs.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentIhs.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentIhs.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/segmentIhs.dir/depend.internal".
Scanning dependencies of target segmentIhs
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Building CXX object CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/segmentIhs.cpp
[ 95%] Linking CXX executable vcfcountalleles
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcountalleles.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -o vcfcountalleles -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target vcfcountalleles
make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandomsample.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandomsample.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandomsample.dir/depend.internal".
Dependee "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/vcfrandomsample.dir/depend.internal".
Scanning dependencies of target vcfrandomsample
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o
/usr/bin/c++ -DVCFLIB_VERSION=\"1.0.2\" -DVERSION=\"1.0.2\" -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/include -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/intervaltree -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/multichoose -I/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -o CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -c /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/vcfrandomsample.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/split.h:15,
from /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/src/segmentIhs.cpp:59:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 97%] Linking CXX executable segmentIhs
/usr/bin/cmake -E cmake_link_script CMakeFiles/segmentIhs.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -o segmentIhs -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 97%] Built target segmentIhs
[ 98%] Linking CXX executable vcfdistance
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdistance.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -o vcfdistance -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 98%] Built target vcfdistance
[ 99%] Linking CXX executable vcflength
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcflength.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcflength.dir/src/vcflength.cpp.o -o vcflength -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[ 99%] Built target vcflength
[100%] Linking CXX executable vcfrandomsample
/usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandomsample.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -o vcfrandomsample -Wl,-rpath,/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf: libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lpthread -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp
make[4]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target vcfrandomsample
make[3]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
markdown README.md > README.html
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
export LD_LIBRARY_PATH=/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf/:$LD_LIBRARY_PATH && cd test && /usr/bin/make
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/test'
g++ -Wall -std=c++0x -I../src -I../googletest/googletest/include/ -I../fastahack -I../smithwaterman/ -I../multichoose/ -I../filevercmp/ -I../googletest/googletest/make/ tests/mainTest.cpp -o tests/main -lvcflib -lgtest_main -lgtest -L../obj-arm-linux-gnueabihf/ -L../googletest/googletest/make/ -lm -ltabixpp -lhts -lpthread
./tests/main
[==========] Running 5 tests from 2 test suites.
[----------] Global test environment set-up.
[----------] 1 test from Variant
[ RUN ] Variant.correctGenotype
[ OK ] Variant.correctGenotype (6343 ms)
[----------] 1 test from Variant (6343 ms total)
[----------] 4 tests from VariantCallFile
[ RUN ] VariantCallFile.open
[ OK ] VariantCallFile.open (0 ms)
[ RUN ] VariantCallFile.recordCountUncompressed
[ OK ] VariantCallFile.recordCountUncompressed (1 ms)
[ RUN ] VariantCallFile.recordCountCompressed
[ OK ] VariantCallFile.recordCountCompressed (10 ms)
[ RUN ] VariantCallFile.sampleNamesCompressed
[ OK ] VariantCallFile.sampleNamesCompressed (4 ms)
[----------] 4 tests from VariantCallFile (15 ms total)
[----------] Global test environment tear-down
[==========] 5 tests from 2 test suites ran. (6359 ms total)
[ PASSED ] 5 tests.
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/test'
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=cmake
dh_prep -a -O--buildsystem=cmake
dh_auto_install -a -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/libvcflib-1.0.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/libvcflib-1.0.2+dfsg -B/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfecho
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfecho" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/dumpContigsFromHeader
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/dumpContigsFromHeader" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/bFst
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/bFst" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/pVst
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/pVst" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/hapLrt
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/hapLrt" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/popStats
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/popStats" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/wcFst
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/wcFst" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/iHS
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/iHS" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/segmentFst
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/segmentFst" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/segmentIhs
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/segmentIhs" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/genotypeSummary
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/genotypeSummary" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/sequenceDiversity
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/sequenceDiversity" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/pFst
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/pFst" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/smoother
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/smoother" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfld
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfld" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/plotHaps
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/plotHaps" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/abba-baba
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/abba-baba" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/permuteGPAT++
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/permuteGPAT++" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/permuteSmooth
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/permuteSmooth" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/normalize-iHS
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/normalize-iHS" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/meltEHH
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/meltEHH" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfaltcount
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfaltcount" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfhetcount
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfhetcount" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfhethomratio
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfhethomratio" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcffilter
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcffilter" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcf2tsv
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcf2tsv" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenotypes
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenotypes" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfannotategenotypes
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfannotategenotypes" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcommonsamples
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcommonsamples" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfremovesamples
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfremovesamples" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfkeepsamples
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfkeepsamples" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsamplenames
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsamplenames" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenotypecompare
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenotypecompare" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcffixup
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcffixup" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfclassify
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfclassify" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsamplediff
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsamplediff" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfremoveaberrantgenotypes
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfremoveaberrantgenotypes" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfrandom
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfrandom" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfparsealts
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfparsealts" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfstats
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfstats" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfflatten
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfflatten" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfprimers
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfprimers" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfnumalt
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfnumalt" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcleancomplex
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcleancomplex" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfintersect
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfintersect" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfannotate
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfannotate" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfallelicprimitives
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfallelicprimitives" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfoverlay
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfoverlay" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfaddinfo
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfaddinfo" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfkeepinfo
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfkeepinfo" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfkeepgeno
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfkeepgeno" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfafpath
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfafpath" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcountalleles
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcountalleles" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcflength
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcflength" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfdistance
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfdistance" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfrandomsample
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfrandomsample" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfentropy
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfentropy" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfglxgt
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfglxgt" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfroc
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfroc" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcheck
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcheck" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfstreamsort
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfstreamsort" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfuniq
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfuniq" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfuniqalleles
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfuniqalleles" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfremap
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfremap" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcf2fasta
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcf2fasta" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsitesummarize
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsitesummarize" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfbreakmulti
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfbreakmulti" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcreatemulti
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcreatemulti" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfevenregions
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfevenregions" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcat
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcat" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenosummarize
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenosummarize" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenosamplenames
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgenosamplenames" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgeno2haplo
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgeno2haplo" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfleftalign
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfleftalign" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcombine
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfcombine" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgeno2alleles
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfgeno2alleles" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfindex
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfindex" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcf2dag
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcf2dag" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsample2info
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfsample2info" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfqual2info
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfqual2info" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfinfo2qual
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfinfo2qual" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfglbound
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfglbound" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfinfosummarize
-- Set runtime path of "/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/bin/vcfinfosummarize" to ""
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libvcflib.so.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libvcflib.so
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/filevercmp.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/IntervalTree.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/catch.hpp
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/multichoose.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/multipermute.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/BedReader.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/Variant.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/cdflib.hpp
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/convert.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/gpatInfo.hpp
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/join.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/makeUnique.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/mt19937ar.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/pdflib.hpp
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/rnglib.hpp
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/split.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/var.hpp
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/vec128int.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/include/veclib_types.h
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/abba-baba.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfgenotypecompare.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfld.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfbreakmulti.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfgenotypes.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfremoveaberrantgenotypes.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfflatten.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/meltEHH.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfevenregions.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfrandomsample.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfannotate.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfgeno2haplo.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/smoother.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/pVst.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfqual2info.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcflength.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfgeno2alleles.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/genotypeSummary.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfhethomratio.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/bFst.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfglbound.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcf2fasta.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfkeepgeno.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfaltcount.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfinfosummarize.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfafpath.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfsample2info.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfparsealts.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfkeepinfo.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcffilter.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfgenosummarize.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfdistance.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfcommonsamples.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfstats.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfrandom.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/iHS.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfnumalt.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/wcFst.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfstreamsort.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfsamplenames.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfuniqalleles.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfroc.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfglxgt.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/sequenceDiversity.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcf2tsv.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfcat.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfcountalleles.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfintersect.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfallelicprimitives.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/permuteSmooth.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcffixup.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfcleancomplex.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/normalize-iHS.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfindex.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcf2dag.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/segmentIhs.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/hapLrt.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfsamplediff.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfcreatemulti.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfcheck.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfhetcount.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/pFst.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfannotategenotypes.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfprimers.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/dumpContigsFromHeader.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfremap.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfremovesamples.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/plotHaps.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfgenosamplenames.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfclassify.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfcombine.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfoverlay.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfaddinfo.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfleftalign.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfinfo2qual.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfentropy.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfecho.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/permuteGPAT++.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfkeepsamples.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfsitesummarize.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/segmentFst.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/popStats.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcflib.1
-- Installing: /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/tmp/usr/man/man1/man/vcfuniq.1
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_install
find debian -name filevercmp.h -delete
cp -a filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/
mkdir -p debian/libvcflib-dev/usr/include/intervaltree
mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree
# install pkg-config file
mkdir -p /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libvcflib.pc /<<BUILDDIR>>/libvcflib-1.0.2+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
rm -rf debian/*/usr/lib/vcflib/bin/*.R
for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
grep: debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/libvcflib.so: No such file or directory
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_installdocs -a -O--buildsystem=cmake
dh_installchangelogs -a -O--buildsystem=cmake
dh_installman -a -O--buildsystem=cmake
dh_installsystemduser -a -O--buildsystem=cmake
dh_lintian -a -O--buildsystem=cmake
dh_perl -a -O--buildsystem=cmake
dh_link -a -O--buildsystem=cmake
dh_strip_nondeterminism -a -O--buildsystem=cmake
dh_compress -a -O--buildsystem=cmake
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_fixperms
chmod -x debian/*/usr/lib/R/site-library/*/*.R
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.2+dfsg'
dh_missing -a -O--buildsystem=cmake
dh_dwz -a -a -O--buildsystem=cmake
dh_strip -a -a -O--buildsystem=cmake
dh_makeshlibs -a -a -O--buildsystem=cmake
dh_shlibdeps -a -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 was not linked against libdisorder.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfallelicprimitives contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/smoother contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/bFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfuniqalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pVst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/popStats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcffixup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a -O--buildsystem=cmake
dh_gencontrol -a -O--buildsystem=cmake
dh_md5sums -a -O--buildsystem=cmake
dh_builddeb -a -O--buildsystem=cmake
dpkg-deb: building package 'libvcflib1' in '../libvcflib1_1.0.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib1-dbgsym' in '../libvcflib1-dbgsym_1.0.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.2+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../libvcflib_1.0.2+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-01-30T15:18:50Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libvcflib_1.0.2+dfsg-2_armhf.changes:
-------------------------------------
Format: 1.8
Date: Thu, 28 Jan 2021 13:03:40 +0100
Source: libvcflib
Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym
Architecture: armhf
Version: 1.0.2+dfsg-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
libvcflib-dev - C++ library for parsing and manipulating VCF files (development)
libvcflib-tools - C++ library for parsing and manipulating VCF files (tools)
libvcflib1 - C++ library for parsing and manipulating VCF files
Changes:
libvcflib (1.0.2+dfsg-2) unstable; urgency=medium
.
* Team upload.
* debian/rules: unit tests: Use DEB_HOST_GNU_TYPE instead of
DEB_HOST_MULTIARCH for finding the build directory
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libvcflib-dev_1.0.2+dfsg-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 84928 bytes: control archive=1668 bytes.
1268 bytes, 27 lines control
1548 bytes, 23 lines md5sums
Package: libvcflib-dev
Source: libvcflib
Version: 1.0.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 550
Depends: libvcflib1 (= 1.0.2+dfsg-2), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files (development)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2021-01-28 12:03 ./
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/include/
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/include/intervaltree/
-rw-r--r-- root/root 11699 2021-01-28 07:04 ./usr/include/intervaltree/IntervalTree.h
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/include/vcflib/
-rw-r--r-- root/root 5828 2021-01-28 07:04 ./usr/include/vcflib/BedReader.h
-rw-r--r-- root/root 22823 2021-01-28 12:03 ./usr/include/vcflib/Variant.h
-rw-r--r-- root/root 368608 2021-01-28 07:04 ./usr/include/vcflib/catch.hpp
-rw-r--r-- root/root 6628 2021-01-28 07:04 ./usr/include/vcflib/cdflib.hpp
-rw-r--r-- root/root 697 2021-01-28 07:04 ./usr/include/vcflib/convert.h
-rw-r--r-- root/root 1777 2021-01-28 07:04 ./usr/include/vcflib/filevercmp.h
-rw-r--r-- root/root 2053 2021-01-28 07:04 ./usr/include/vcflib/gpatInfo.hpp
-rw-r--r-- root/root 1238 2021-01-28 07:04 ./usr/include/vcflib/join.h
-rw-r--r-- root/root 194 2021-01-28 07:04 ./usr/include/vcflib/makeUnique.h
-rw-r--r-- root/root 6580 2021-01-28 07:04 ./usr/include/vcflib/mt19937ar.h
-rw-r--r-- root/root 2155 2021-01-28 07:04 ./usr/include/vcflib/multichoose.h
-rw-r--r-- root/root 3446 2021-01-28 07:04 ./usr/include/vcflib/multipermute.h
-rw-r--r-- root/root 2507 2021-01-28 07:04 ./usr/include/vcflib/pdflib.hpp
-rw-r--r-- root/root 1295 2021-01-28 07:04 ./usr/include/vcflib/rnglib.hpp
-rw-r--r-- root/root 1825 2021-01-28 07:04 ./usr/include/vcflib/split.h
-rw-r--r-- root/root 2312 2021-01-28 07:04 ./usr/include/vcflib/var.hpp
-rw-r--r-- root/root 75596 2021-01-28 07:04 ./usr/include/vcflib/vec128int.h
-rw-r--r-- root/root 14148 2021-01-28 07:04 ./usr/include/vcflib/veclib_types.h
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2021-01-28 12:03 ./usr/lib/arm-linux-gnueabihf/libvcflib.so -> libvcflib.so.1
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 283 2021-01-28 12:03 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libvcflib.pc
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/share/
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/share/doc/libvcflib-dev/
-rw-r--r-- root/root 2001 2021-01-28 12:03 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz
-rw-r--r-- root/root 2044 2021-01-28 12:03 ./usr/share/doc/libvcflib-dev/copyright
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 91 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib-dev
libvcflib-tools-dbgsym_1.0.2+dfsg-2_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 15596224 bytes: control archive=4276 bytes.
3770 bytes, 12 lines control
8893 bytes, 84 lines md5sums
Package: libvcflib-tools-dbgsym
Source: libvcflib
Version: 1.0.2+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 16727
Depends: libvcflib-tools (= 1.0.2+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for libvcflib-tools
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libvcflib-tools_1.0.2+dfsg-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 622636 bytes: control archive=5488 bytes.
1519 bytes, 29 lines control
12467 bytes, 184 lines md5sums
Package: libvcflib-tools
Source: libvcflib
Version: 1.0.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3654
Depends: libc6 (>= 2.29), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc-s1 (>= 3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 5.2), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.2+dfsg), python3:any, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase
Suggests: r-cran-pracma
Breaks: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Replaces: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Section: science
Priority: optional
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains several tools using the library.
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libvcflib1-dbgsym_1.0.2+dfsg-2_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 1468956 bytes: control archive=560 bytes.
409 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libvcflib1-dbgsym
Source: libvcflib
Version: 1.0.2+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1530
Depends: libvcflib1 (= 1.0.2+dfsg-2)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libvcflib1
Build-Ids: 9be0f5cf87a9bc286acdc02de85545da467a8815
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lrwxrwxrwx root/root 0 2021-01-28 12:03 ./usr/share/doc/libvcflib1-dbgsym -> libvcflib1
libvcflib1_1.0.2+dfsg-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 126264 bytes: control archive=1216 bytes.
1252 bytes, 25 lines control
298 bytes, 4 lines md5sums
39 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libvcflib1
Source: libvcflib
Version: 1.0.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 340
Depends: libc6 (>= 2.29), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc-s1 (>= 3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 5.2), libtabixpp0 (>= 1.0.0)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
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-rw-r--r-- root/root 2044 2021-01-28 12:03 ./usr/share/doc/libvcflib1/copyright
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-01-28 12:03 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 88 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib1
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 435432
Build-Time: 359
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 189
Job: libvcflib_1.0.2+dfsg-2
Machine Architecture: armhf
Package: libvcflib
Package-Time: 566
Source-Version: 1.0.2+dfsg-2
Space: 435432
Status: successful
Version: 1.0.2+dfsg-2
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Finished at 2021-01-30T15:18:50Z
Build needed 00:09:26, 435432k disk space