libvcflib →
1.0.1+dfsg-2 →
armhf → 2020-01-02 11:38:59
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| libvcflib 1.0.1+dfsg-2 (armhf) Thu, 02 Jan 2020 11:09:03 +0000 |
+==============================================================================+
Package: libvcflib
Version: 1.0.1+dfsg-2
Source Version: 1.0.1+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-cac9046b-e184-479c-a095-af42edc200bd' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.2 MB in 27s (893 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libvcflib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libvcflib.git
Please use:
git clone https://salsa.debian.org/med-team/libvcflib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 7543 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.1+dfsg-2 (dsc) [2311 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.1+dfsg-2 (tar) [7528 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.1+dfsg-2 (diff) [12.4 kB]
Fetched 7543 kB in 1s (7051 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libvcflib-1bbhRP/libvcflib-1.0.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libvcflib-1bbhRP' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-PwXPF0/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-PwXPF0/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-PwXPF0/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2565 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13002 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-exec, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl
Filtered Build-Depends: debhelper-compat (= 12), dh-exec, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl
dpkg-deb: building package 'sbuild-build-depends-libvcflib-dummy' in '/<<BUILDDIR>>/resolver-PwXPF0/apt_archive/sbuild-build-depends-libvcflib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libvcflib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Sources [608 B]
Get:5 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ Packages [695 B]
Fetched 2636 B in 1s (3548 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libvcflib build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libdisorder-dev
libdisorder0 libelf1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts2 libicu63 libipc-run3-perl libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libsmithwaterman-dev
libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev libssw0
libsub-override-perl libtabixpp-dev libtabixpp0 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db markdown pkg-config po-debconf sensible-utils
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc
krb5-user liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix
libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libdisorder-dev
libdisorder0 libelf1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts2 libicu63 libipc-run3-perl libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libsmithwaterman-dev
libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev libssw0
libsub-override-perl libtabixpp-dev libtabixpp0 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db markdown pkg-config po-debconf
sbuild-build-depends-libvcflib-dummy sensible-utils zlib1g-dev
0 upgraded, 68 newly installed, 0 to remove and 29 not upgraded.
Need to get 26.7 MB of archives.
After this operation, 82.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-PwXPF0/apt_archive ./ sbuild-build-depends-libvcflib-dummy 0.invalid.0 [980 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-3 [28.3 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.3 [174 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.3 [1019 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2 [25.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-5 [257 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.3-3 [76.4 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-1 [4568 B]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-1 [4156 B]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libfastahack0 armhf 1.0.0+dfsg-2 [21.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libfastahack-dev armhf 1.0.0+dfsg-2 [22.9 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libhts2 armhf 1.9-12 [275 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.9-12 [4141 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libipc-run3-perl all 0.048-1 [37.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman0 armhf 0.0+git20160702.2610e25-7 [30.5 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman-dev armhf 0.0+git20160702.2610e25-7 [34.3 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libssw0 armhf 1.1-6 [19.2 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libssw-dev armhf 1.1-6 [23.1 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp0 armhf 1.0.0-5 [7768 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp-dev armhf 1.0.0-5 [7356 B]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf markdown all 1.0.1-10 [17.4 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 26.7 MB in 3s (9324 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 13002 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../01-libtinfo5_6.1+20191019-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.1+20191019-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../04-groff-base_1.22.4-4_armhf.deb ...
Unpacking groff-base (1.22.4-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../05-libpipeline1_1.5.1-3_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-3) ...
Selecting previously unselected package man-db.
Preparing to unpack .../06-man-db_2.9.0-2_armhf.deb ...
Unpacking man-db (2.9.0-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../07-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../08-libmagic-mgc_1%3a5.37-6_armhf.deb ...
Unpacking libmagic-mgc (1:5.37-6) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../09-libmagic1_1%3a5.37-6_armhf.deb ...
Unpacking libmagic1:armhf (1:5.37-6) ...
Selecting previously unselected package file.
Preparing to unpack .../10-file_1%3a5.37-6_armhf.deb ...
Unpacking file (1:5.37-6) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../11-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../12-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../13-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../14-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../17-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package libtool.
Preparing to unpack .../18-libtool_2.4.6-11_all.deb ...
Unpacking libtool (2.4.6-11) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../19-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../20-libdebhelper-perl_12.7.3_all.deb ...
Unpacking libdebhelper-perl (12.7.3) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../21-libarchive-zip-perl_1.67-1_all.deb ...
Unpacking libarchive-zip-perl (1.67-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../22-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.6.3-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.6.3-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../24-dh-strip-nondeterminism_1.6.3-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.6.3-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../25-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../26-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../27-libglib2.0-0_2.62.4-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.62.4-1) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../28-libicu63_63.2-2_armhf.deb ...
Unpacking libicu63:armhf (63.2-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../29-libxml2_2.9.4+dfsg1-8_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-8) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../30-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../31-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../32-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../33-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../34-debhelper_12.7.3_all.deb ...
Unpacking debhelper (12.7.3) ...
Selecting previously unselected package dh-exec.
Preparing to unpack .../35-dh-exec_0.23.2_armhf.deb ...
Unpacking dh-exec (0.23.2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../36-libbrotli1_1.0.7-5_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-5) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../37-libbz2-dev_1.0.8-2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../38-libkeyutils1_1.6-6_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6-6) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../39-libkrb5support0_1.17-6+b1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-6+b1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../40-libk5crypto3_1.17-6+b1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-6+b1) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../41-libssl1.1_1.1.1d-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1d-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../42-libkrb5-3_1.17-6+b1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-6+b1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../43-libgssapi-krb5-2_1.17-6+b1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-6+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../44-libnghttp2-14_1.40.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.40.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../45-libpsl5_0.20.2-2_armhf.deb ...
Unpacking libpsl5:armhf (0.20.2-2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../46-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../47-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../48-libcurl3-gnutls_7.67.0-2_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.67.0-2) ...
Selecting previously unselected package libdeflate0.
Preparing to unpack .../49-libdeflate0_1.3-3_armhf.deb ...
Unpacking libdeflate0 (1.3-3) ...
Selecting previously unselected package libdisorder0:armhf.
Preparing to unpack .../50-libdisorder0_0.0.2+git20130809.8062ee1-1_armhf.deb ...
Unpacking libdisorder0:armhf (0.0.2+git20130809.8062ee1-1) ...
Selecting previously unselected package libdisorder-dev:armhf.
Preparing to unpack .../51-libdisorder-dev_0.0.2+git20130809.8062ee1-1_armhf.deb ...
Unpacking libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-1) ...
Selecting previously unselected package libfastahack0.
Preparing to unpack .../52-libfastahack0_1.0.0+dfsg-2_armhf.deb ...
Unpacking libfastahack0 (1.0.0+dfsg-2) ...
Selecting previously unselected package libfastahack-dev.
Preparing to unpack .../53-libfastahack-dev_1.0.0+dfsg-2_armhf.deb ...
Unpacking libfastahack-dev (1.0.0+dfsg-2) ...
Selecting previously unselected package libhts2:armhf.
Preparing to unpack .../54-libhts2_1.9-12_armhf.deb ...
Unpacking libhts2:armhf (1.9-12) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../55-liblzma-dev_5.2.4-1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.4-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../56-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../57-libhts-dev_1.9-12_armhf.deb ...
Unpacking libhts-dev:armhf (1.9-12) ...
Selecting previously unselected package libipc-run3-perl.
Preparing to unpack .../58-libipc-run3-perl_0.048-1_all.deb ...
Unpacking libipc-run3-perl (0.048-1) ...
Selecting previously unselected package libsmithwaterman0.
Preparing to unpack .../59-libsmithwaterman0_0.0+git20160702.2610e25-7_armhf.deb ...
Unpacking libsmithwaterman0 (0.0+git20160702.2610e25-7) ...
Selecting previously unselected package libsmithwaterman-dev.
Preparing to unpack .../60-libsmithwaterman-dev_0.0+git20160702.2610e25-7_armhf.deb ...
Unpacking libsmithwaterman-dev (0.0+git20160702.2610e25-7) ...
Selecting previously unselected package libssw0:armhf.
Preparing to unpack .../61-libssw0_1.1-6_armhf.deb ...
Unpacking libssw0:armhf (1.1-6) ...
Selecting previously unselected package libssw-dev:armhf.
Preparing to unpack .../62-libssw-dev_1.1-6_armhf.deb ...
Unpacking libssw-dev:armhf (1.1-6) ...
Selecting previously unselected package libtabixpp0:armhf.
Preparing to unpack .../63-libtabixpp0_1.0.0-5_armhf.deb ...
Unpacking libtabixpp0:armhf (1.0.0-5) ...
Selecting previously unselected package libtabixpp-dev:armhf.
Preparing to unpack .../64-libtabixpp-dev_1.0.0-5_armhf.deb ...
Unpacking libtabixpp-dev:armhf (1.0.0-5) ...
Selecting previously unselected package markdown.
Preparing to unpack .../65-markdown_1.0.1-10_all.deb ...
Unpacking markdown (1.0.1-10) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../66-pkg-config_0.29-6_armhf.deb ...
Unpacking pkg-config (0.29-6) ...
Selecting previously unselected package sbuild-build-depends-libvcflib-dummy.
Preparing to unpack .../67-sbuild-build-depends-libvcflib-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-libvcflib-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.1-3) ...
Setting up libdisorder0:armhf (0.0.2+git20130809.8062ee1-1) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libmagic-mgc (1:5.37-6) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.4-1) ...
No schema files found: doing nothing.
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libdebhelper-perl (12.7.3) ...
Setting up libbrotli1:armhf (1.0.7-5) ...
Setting up libsmithwaterman0 (0.0+git20160702.2610e25-7) ...
Setting up libnghttp2-14:armhf (1.40.0-1) ...
Setting up libmagic1:armhf (1:5.37-6) ...
Setting up libdeflate0 (1.3-3) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.37-6) ...
Setting up libfastahack0 (1.0.0+dfsg-2) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up libfastahack-dev (1.0.0+dfsg-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up pkg-config (0.29-6) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libipc-run3-perl (0.048-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libssw0:armhf (1.1-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up markdown (1.0.1-10) ...
Setting up libbz2-dev:armhf (1.0.8-2) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-1) ...
Setting up libssw-dev:armhf (1.1-6) ...
Setting up libtool (2.4.6-11) ...
Setting up m4 (1.4.18-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libsmithwaterman-dev (0.0+git20160702.2610e25-7) ...
Setting up autoconf (2.69-11) ...
Setting up dh-strip-nondeterminism (1.6.3-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libhts2:armhf (1.9-12) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.9-12) ...
Setting up libtabixpp0:armhf (1.0.0-5) ...
Setting up libtabixpp-dev:armhf (1.0.0-5) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.3) ...
Setting up dh-exec (0.23.2) ...
Setting up sbuild-build-depends-libvcflib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.1-5+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-19+rpi1+b1 gcc-9_9.2.1-19+rpi1+b1 libc6-dev_2.29-3+rpi1 libstdc++-9-dev_9.2.1-19+rpi1+b1 libstdc++6_9.2.1-19+rpi1+b1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-5+rpi1 binutils-arm-linux-gnueabihf_2.33.1-5+rpi1 binutils-common_2.33.1-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-19+rpi1+b1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-19+rpi1+b1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-19+rpi1+b1 gcc-9-base_9.2.1-19+rpi1+b1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-19+rpi1+b1 libassuan0_2.5.3-7 libatomic1_9.2.1-19+rpi1+b1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-5+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-3+rpi1 libc-dev-bin_2.29-3+rpi1 libc6_2.29-3+rpi1 libc6-dev_2.29-3+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-19+rpi1+b1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdeflate0_1.3-3 libdisorder-dev_0.0.2+git20130809.8062ee1-1 libdisorder0_0.0.2+git20130809.8062ee1-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfastahack-dev_1.0.0+dfsg-2 libfastahack0_1.0.0+dfsg-2 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-19+rpi1+b1 libgcc1_1:9.2.1-19+rpi1+b1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-5 libgomp1_9.2.1-19+rpi1+b1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.9-12 libhts2_1.9-12 libicu63_63.2-2 libidn2-0_2.2.0-2 libipc-run3-perl_0.048-1 libisl22_0.22-2 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-3 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.1-3 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 librust-bitflags-dev_1.2.1-1 librust-cloudabi+default-dev_0.0.3-1 librust-cloudabi-dev_0.0.3-1 librust-fuchsia-zircon-dev_0.3.3-2 librust-fuchsia-zircon-sys-dev_0.3.3-2 librust-libc-dev_0.2.62-1 librust-phf-codegen-dev_0.7.23-1 librust-phf-generator-dev_0.7.23-1 librust-phf-shared-dev_0.7.23-2+b1 librust-rand-0.5+alloc-dev_0.5.5-2+rpi1 librust-rand-0.5+std-dev_0.5.5-2+rpi1 librust-rand-0.5-dev_0.5.5-2+rpi1 librust-rand-core-0.2+alloc-dev_0.2.2-1 librust-rand-core-0.2+std-dev_0.2.2-1 librust-rand-core-0.2-dev_0.2.2-1 librust-rand-core-dev_0.3.0-1 librust-siphasher-dev_0.2.3-1 librust-winapi-dev_0.3.6-1 librust-winapi-i686-pc-windows-gnu-dev_0.4.0-1 librust-winapi-x86-64-pc-windows-gnu-dev_0.4.0-1 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.2-2+rpi1 libselinux1_2.9-3 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsmithwaterman-dev_0.0+git20160702.2610e25-7 libsmithwaterman0_0.0+git20160702.2610e25-7 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libssw-dev_1.1-6 libssw0_1.1-6 libstdc++-9-dev_9.2.1-19+rpi1+b1 libstdc++6_9.2.1-19+rpi1+b1 libsub-override-perl_0.09-2 libsystemd0_243-8+rpi1 libtabixpp-dev_1.0.0-5 libtabixpp0_1.0.0-5 libtasn1-6_4.14-3 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-19+rpi1+b1 libuchardet0_0.0.6-3 libudev1_243-8+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 markdown_1.0.1-10 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_5.7 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libvcflib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Dec 26 14:55:40 2019 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libvcflib_1.0.1+dfsg-2.dsc
dpkg-source: info: extracting libvcflib in /<<BUILDDIR>>/libvcflib-1.0.1+dfsg
dpkg-source: info: unpacking libvcflib_1.0.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking libvcflib_1.0.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_fsom
dpkg-source: info: applying use_debian_packaged_tabixpp.patch
dpkg-source: info: applying use_debian_packaged_smithwaterman.patch
dpkg-source: info: applying use_debian_packaged_fastahack.patch
dpkg-source: info: applying use_debian_packaged_libssw.patch
dpkg-source: info: applying shared_lib.patch
dpkg-source: info: applying pkg-config.patch
dpkg-source: info: applying fix_ssw_cpp_header_name.patch
dpkg-source: info: applying dont_link_pthread
dpkg-source: info: applying override_version
dpkg-source: info: applying hardening-flags
dpkg-source: info: applying no_libVCFH
dpkg-source: info: applying disorder_include
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-cac9046b-e184-479c-a095-af42edc200bd
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libvcflib
dpkg-buildpackage: info: source version 1.0.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
rm -f bin/vcfecho bin/vcfnormalizesvs bin/dumpContigsFromHeader bin/bFst bin/pVst bin/hapLrt bin/popStats bin/wcFst bin/iHS bin/segmentFst bin/segmentIhs bin/genotypeSummary bin/sequenceDiversity bin/pFst bin/smoother bin/vcfld bin/plotHaps bin/abba-baba bin/permuteGPAT++ bin/permuteSmooth bin/normalize-iHS bin/meltEHH bin/vcfaltcount bin/vcfhetcount bin/vcfhethomratio bin/vcffilter bin/vcf2tsv bin/vcfgenotypes bin/vcfannotategenotypes bin/vcfcommonsamples bin/vcfremovesamples bin/vcfkeepsamples bin/vcfsamplenames bin/vcfgenotypecompare bin/vcffixup bin/vcfclassify bin/vcfsamplediff bin/vcfremoveaberrantgenotypes bin/vcfrandom bin/vcfparsealts bin/vcfstats bin/vcfflatten bin/vcfprimers bin/vcfnumalt bin/vcfcleancomplex bin/vcfintersect bin/vcfannotate bin/vcfallelicprimitives bin/vcfoverlay bin/vcfaddinfo bin/vcfkeepinfo bin/vcfkeepgeno bin/vcfafpath bin/vcfcountalleles bin/vcflength bin/vcfdistance bin/vcfrandomsample bin/vcfentropy bin/vcfglxgt bin/vcfroc bin/vcfcheck bin/vcfstreamsort bin/vcfuniq bin/vcfuniqalleles bin/vcfremap bin/vcf2fasta bin/vcfsitesummarize bin/vcfbreakmulti bin/vcfcreatemulti bin/vcfevenregions bin/vcfcat bin/vcfgenosummarize bin/vcfgenosamplenames bin/vcfgeno2haplo bin/vcfleftalign bin/vcfcombine bin/vcfgeno2alleles bin/vcfindex bin/vcf2dag bin/vcfsample2info bin/vcfqual2info bin/vcfinfo2qual bin/vcfglbound bin/vcfunphase bin/vcfnull2ref bin/vcfinfosummarize src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o
rm -f libvcflib.so*
rm -f -r bin
rm -f -r lib
rm -f -r include
rm -f -r obj
make clean -C multichoose
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
rm -f cmultichoose
rm -f multichoose
rm -f multipermute
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
make clean -C test
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/test'
rm -f tests/main
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/test'
make clean -C filevercmp
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
rm -f filevercmp
rm -f filevercmp.o
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
make clean -C intervaltree
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
rm -rf interval_tree_test stage
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_clean
find . -name "*.o" -delete
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
if [ ! -d bin ]; then mkdir -p bin; fi
if [ ! -d lib ]; then mkdir -p lib; fi
if [ ! -d include ]; then mkdir -p include; fi
if [ ! -d obj ]; then mkdir -p obj; fi
cd multichoose && LDFLAGS="-Wl,-z,relro -Wl,-z,now" make && cp -f *.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
cd filevercmp && LDFLAGS="-Wl,-z,relro -Wl,-z,now" make && cp -f *.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/ && cp -f *.o /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
cd intervaltree && LDFLAGS="-Wl,-z,relro -Wl,-z,now" make && cp -f *.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
make[3]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
make[3]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filevercmp.c
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now multichoose.cpp -o multichoose
make[3]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -Wall -Wl,-z,relro -Wl,-z,now -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm interval_tree_test.cpp -std=c++0x -o interval_tree_test
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now multipermute.cpp -o multipermute
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o filevercmp main.c filevercmp.o
make[3]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
make[3]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/Variant.o src/Variant.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/rnglib.o src/rnglib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/var.o src/var.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/pdflib.o src/pdflib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual void genotype::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void pooled::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/cdflib.o src/cdflib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/split.o src/split.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Catch::SectionEndInfo&}; _Tp = Catch::SectionEndInfo; _Alloc = std::allocator<Catch::SectionEndInfo>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Catch::SectionEndInfo>::iterator' {aka '__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void Catch::RunContext::sectionEndedEarly(const Catch::SectionEndInfo&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In destructor 'Catch::Section::~Section()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Interval<unsigned int, double>&}; _Tp = Interval<unsigned int, double>; _Alloc = std::allocator<Interval<unsigned int, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void IntervalTree<Scalar, Value>::visit_near(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::visit_overlapping(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = unsigned int; Value = double]::<lambda(const interval&)>; Scalar = unsigned int; Value = double]::<lambda(const interval&)>; Scalar = unsigned int; Value = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'IntervalTree<Scalar, Value>::interval_vector IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = unsigned int; Value = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Interval<double, unsigned int>&}; _Tp = Interval<double, unsigned int>; _Alloc = std::allocator<Interval<double, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void IntervalTree<Scalar, Value>::visit_near(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::visit_overlapping(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = double; Value = unsigned int]::<lambda(const interval&)>; Scalar = double; Value = unsigned int]::<lambda(const interval&)>; Scalar = double; Value = unsigned int]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'IntervalTree<Scalar, Value>::interval_vector IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = double; Value = unsigned int]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libvcflib.so.1 -o libvcflib.so.1 src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o filevercmp/filevercmp.o -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
ln -s libvcflib.so.1 libvcflib.so
cp -f -a libvcflib.so* lib
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Distance = int; _Tp = Interval<unsigned int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In constructor 'IntervalTree<Scalar, Value>::IntervalTree(IntervalTree<Scalar, Value>::interval_vector&&, std::size_t, std::size_t, std::size_t, Scalar, Scalar) [with Scalar = unsigned int; Value = double]':
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Distance = int; _Tp = Interval<double, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In constructor 'IntervalTree<Scalar, Value>::IntervalTree(IntervalTree<Scalar, Value>::interval_vector&&, std::size_t, std::size_t, std::size_t, Scalar, Scalar) [with Scalar = double; Value = unsigned int]':
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
make[3]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfecho.cpp -o bin/vcfecho -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfnormalizesvs.cpp -o bin/vcfnormalizesvs -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/dumpContigsFromHeader.cpp -o bin/dumpContigsFromHeader -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/bFst.cpp -o bin/bFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/pVst.cpp -o bin/pVst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/hapLrt.cpp -o bin/hapLrt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/popStats.cpp -o bin/popStats -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void phardy(std::vector<double>&, double, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, pop&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void calc(copyNcounts*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void loadDat(copyNcounts*, std::string&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/hapLrt.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/wcFst.cpp -o bin/wcFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/hapLrt.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/iHS.cpp -o bin/iHS -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/segmentFst.cpp -o bin/segmentFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/segmentIhs.cpp -o bin/segmentIhs -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/segmentFst.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/genotypeSummary.cpp -o bin/genotypeSummary -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/segmentIhs.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/sequenceDiversity.cpp -o bin/sequenceDiversity -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/pFst.cpp -o bin/pFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/smoother.cpp -o bin/smoother -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/sequenceDiversity.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/sequenceDiversity.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfld.cpp -o bin/vcfld -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/smoother.cpp:4:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/smoother.cpp:4:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/plotHaps.cpp -o bin/plotHaps -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/abba-baba.cpp -o bin/abba-baba -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/permuteGPAT++.cpp -o bin/permuteGPAT++ -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
src/abba-baba.cpp: In function 'int sample_het(int&)':
src/abba-baba.cpp:74:1: warning: no return statement in function returning non-void [-Wreturn-type]
74 | }
| ^
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfld.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/permuteGPAT++.cpp:39:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/permuteGPAT++.cpp:39:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/permuteSmooth.cpp -o bin/permuteSmooth -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/plotHaps.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfld.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/permuteSmooth.cpp:39:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/permuteSmooth.cpp:39:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool getContiguousWindow(std::vector<score*>&, std::vector<double>&, int, int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'bool permute(double, int, std::vector<score*>&, double*, double*, double*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/plotHaps.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/normalize-iHS.cpp -o bin/normalize-iHS -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/meltEHH.cpp -o bin/meltEHH -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfaltcount.cpp -o bin/vcfaltcount -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfhetcount.cpp -o bin/vcfhetcount -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/normalize-iHS.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/normalize-iHS.cpp:50:
/usr/include/c++/9/bits/stl_vector.h: In function 'void normalize(std::vector<iHSdat*>&, int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfhethomratio.cpp -o bin/vcfhethomratio -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcffilter.cpp -o bin/vcffilter -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
/usr/include/c++/9/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcf2tsv.cpp -o bin/vcf2tsv -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenotypes.cpp -o bin/vcfgenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfannotategenotypes.cpp -o bin/vcfannotategenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcommonsamples.cpp -o bin/vcfcommonsamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfremovesamples.cpp -o bin/vcfremovesamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfkeepsamples.cpp -o bin/vcfkeepsamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsamplenames.cpp -o bin/vcfsamplenames -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenotypecompare.cpp -o bin/vcfgenotypecompare -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&&>, std::tuple<>}; _Key = std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; _Val = std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >; _Compare = std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcffixup.cpp -o bin/vcffixup -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfclassify.cpp -o bin/vcfclassify -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsamplediff.cpp -o bin/vcfsamplediff -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfremoveaberrantgenotypes.cpp -o bin/vcfremoveaberrantgenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfrandom.cpp -o bin/vcfrandom -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfparsealts.cpp -o bin/vcfparsealts -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfstats.cpp -o bin/vcfstats -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfflatten.cpp -o bin/vcfflatten -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfprimers.cpp -o bin/vcfprimers -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfnumalt.cpp -o bin/vcfnumalt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcleancomplex.cpp -o bin/vcfcleancomplex -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfintersect.cpp -o bin/vcfintersect -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfannotate.cpp -o bin/vcfannotate -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfallelicprimitives.cpp -o bin/vcfallelicprimitives -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfoverlay.cpp -o bin/vcfoverlay -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfoverlay.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfallelicprimitives.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long unsigned int&&>, std::tuple<>}; _Key = long unsigned int; _Val = std::pair<const long unsigned int, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >; _Compare = std::less<long unsigned int>; _Alloc = std::allocator<std::pair<const long unsigned int, vcflib::Variant> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfoverlay.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfaddinfo.cpp -o bin/vcfaddinfo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const vcflib::VariantAllele&>, std::tuple<>}; _Key = vcflib::VariantAllele; _Val = std::pair<const vcflib::VariantAllele, double>; _KeyOfValue = std::_Select1st<std::pair<const vcflib::VariantAllele, double> >; _Compare = std::less<vcflib::VariantAllele>; _Alloc = std::allocator<std::pair<const vcflib::VariantAllele, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfkeepinfo.cpp -o bin/vcfkeepinfo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfallelicprimitives.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfkeepgeno.cpp -o bin/vcfkeepgeno -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfafpath.cpp -o bin/vcfafpath -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfafpath.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfafpath.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcountalleles.cpp -o bin/vcfcountalleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcflength.cpp -o bin/vcflength -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfdistance.cpp -o bin/vcfdistance -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfrandomsample.cpp -o bin/vcfrandomsample -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfentropy.cpp -o bin/vcfentropy -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfglxgt.cpp -o bin/vcfglxgt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfroc.cpp -o bin/vcfroc -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcheck.cpp -o bin/vcfcheck -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfstreamsort.cpp -o bin/vcfstreamsort -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfroc.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long double&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long double&&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfuniq.cpp -o bin/vcfuniq -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfuniqalleles.cpp -o bin/vcfuniqalleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfroc.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector<vcflib::VariantAllele*>; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfremap.cpp -o bin/vcfremap -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfstreamsort.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcf2fasta.cpp -o bin/vcf2fasta -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfstreamsort.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsitesummarize.cpp -o bin/vcfsitesummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfbreakmulti.cpp -o bin/vcfbreakmulti -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcreatemulti.cpp -o bin/vcfcreatemulti -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfevenregions.cpp -o bin/vcfevenregions -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcat.cpp -o bin/vcfcat -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfbreakmulti.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenosummarize.cpp -o bin/vcfgenosummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfbreakmulti.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfcreatemulti.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenosamplenames.cpp -o bin/vcfgenosamplenames -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfcreatemulti.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgeno2haplo.cpp -o bin/vcfgeno2haplo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfleftalign.cpp -o bin/vcfleftalign -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcombine.cpp -o bin/vcfcombine -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgeno2alleles.cpp -o bin/vcfgeno2alleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfleftalign.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'double entropy(const string&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfindex.cpp -o bin/vcfindex -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfgeno2haplo.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfgeno2haplo.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcf2dag.cpp -o bin/vcf2dag -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsample2info.cpp -o bin/vcfsample2info -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfqual2info.cpp -o bin/vcfqual2info -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfinfo2qual.cpp -o bin/vcfinfo2qual -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/queue:62,
from src/Variant.h:14,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/smithwaterman/SmithWatermanGotoh.h:4,
from src/Variant.h:21,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'double median(std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:4794:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4794 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4795 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4796 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfglbound.cpp -o bin/vcfglbound -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfunphase.cpp -o bin/vcfunphase -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfnull2ref.cpp -o bin/vcfnull2ref -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfinfosummarize.cpp -o bin/vcfinfosummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfglbound.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfglbound.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/queue:62,
from src/Variant.h:14,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/smithwaterman/SmithWatermanGotoh.h:4,
from src/Variant.h:21,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'double median(std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:4794:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4794 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4795 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4796 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
cp -f scripts/* bin
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
markdown README.md > README.html
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
export LD_LIBRARY_PATH=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/lib/:D_LIBRARY_PATH dh_auto_test
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_install
find debian -name filevercmp.h -delete
cp -a filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/
mkdir -p debian/libvcflib-dev/usr/include/intervaltree
mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree
# install pkg-config file
mkdir -p /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libvcflib.pc /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
rm -rf debian/*/usr/lib/vcflib/bin/*.R
for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
grep: debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/libvcflib.so: No such file or directory
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_fixperms
chmod -x debian/*/usr/lib/R/site-library/*/*.R
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 was not linked against libdisorder.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/smoother contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pVst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/bFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/popStats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libvcflib1' in '../libvcflib1_1.0.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib1-dbgsym' in '../libvcflib1-dbgsym_1.0.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libvcflib_1.0.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-01-02T11:38:44Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libvcflib_1.0.1+dfsg-2_armhf.changes:
-------------------------------------
Format: 1.8
Date: Thu, 26 Dec 2019 15:54:27 +0100
Source: libvcflib
Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym
Architecture: armhf
Version: 1.0.1+dfsg-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
libvcflib-dev - C++ library for parsing and manipulating VCF files (development)
libvcflib-tools - C++ library for parsing and manipulating VCF files (tools)
libvcflib1 - C++ library for parsing and manipulating VCF files
Changes:
libvcflib (1.0.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
* -tools: add ${perl:Depends}
* libvcflib{1,-dev}: add Multi-Arch: same
* Standards-Version: 4.4.1
Checksums-Sha1:
1118e45ab411704ac9a7dcb737935bb4049668a0 28604 libvcflib-dev_1.0.1+dfsg-2_armhf.deb
98efe3ffe146d44ab1122499aab4399e1e272cca 13881048 libvcflib-tools-dbgsym_1.0.1+dfsg-2_armhf.deb
8f078905ef7350b47eb176916a01a5a52cedba1c 512184 libvcflib-tools_1.0.1+dfsg-2_armhf.deb
d78f2fe134a1b6eefca8e805b6c6e39271af42e8 1416928 libvcflib1-dbgsym_1.0.1+dfsg-2_armhf.deb
0e0a45ace42ea47f52568cf31b27ca4b2ace63dd 126860 libvcflib1_1.0.1+dfsg-2_armhf.deb
f5fc26adee3cdfc8f07dc8f8bc3ada2c26ab7071 6798 libvcflib_1.0.1+dfsg-2_armhf.buildinfo
Checksums-Sha256:
e7e6d0042aa961753b806e63cb99674d81d0c2b532d742df1896942d1228c1cc 28604 libvcflib-dev_1.0.1+dfsg-2_armhf.deb
21df24867817f0d6c649dbd34f20139e24f5cb2fe9ab53e3fa4075f4a3c48173 13881048 libvcflib-tools-dbgsym_1.0.1+dfsg-2_armhf.deb
5b69d299321146ed8158dcd6fd89cc91853ada96d509ee0b9775c5d6dbd5464e 512184 libvcflib-tools_1.0.1+dfsg-2_armhf.deb
8f16afdabe63d92f8b67730b7f098a17f413ece43a5c5c239faeeb0a28cd5b68 1416928 libvcflib1-dbgsym_1.0.1+dfsg-2_armhf.deb
e62da062d0ce19b662309d4ddbdece1bc2e3c1455543ea1c1db81cab9c53b220 126860 libvcflib1_1.0.1+dfsg-2_armhf.deb
96bf7e0011a9f538d374d48225e871f7606c2818a4f42b88eadbc2ed1fe7c088 6798 libvcflib_1.0.1+dfsg-2_armhf.buildinfo
Files:
904c718d19a7ad13df408d44954ae6a6 28604 libdevel optional libvcflib-dev_1.0.1+dfsg-2_armhf.deb
f2df2135bc9a5c238c994c265d5aa7f9 13881048 debug optional libvcflib-tools-dbgsym_1.0.1+dfsg-2_armhf.deb
246a8ccec121fde9da9cfff10a31cede 512184 science optional libvcflib-tools_1.0.1+dfsg-2_armhf.deb
1db261de105a522982fb30ea619984b9 1416928 debug optional libvcflib1-dbgsym_1.0.1+dfsg-2_armhf.deb
5293af602b4ae4cbd1b11123adf78b90 126860 libs optional libvcflib1_1.0.1+dfsg-2_armhf.deb
103d3272f06c74b970a97875900676c7 6798 science optional libvcflib_1.0.1+dfsg-2_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libvcflib-dev_1.0.1+dfsg-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 28604 bytes: control archive=1480 bytes.
1268 bytes, 27 lines control
1100 bytes, 16 lines md5sums
Package: libvcflib-dev
Source: libvcflib
Version: 1.0.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 170
Depends: libvcflib1 (= 1.0.1+dfsg-2), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files (development)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/include/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/include/intervaltree/
-rw-r--r-- root/root 11699 2019-12-26 14:54 ./usr/include/intervaltree/IntervalTree.h
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/include/vcflib/
-rw-r--r-- root/root 5601 2019-12-26 14:54 ./usr/include/vcflib/BedReader.h
-rw-r--r-- root/root 22615 2019-12-26 14:54 ./usr/include/vcflib/Variant.h
-rw-r--r-- root/root 470 2019-12-26 14:54 ./usr/include/vcflib/convert.h
-rw-r--r-- root/root 1777 2019-10-01 07:06 ./usr/include/vcflib/filevercmp.h
-rw-r--r-- root/root 1011 2019-12-26 14:54 ./usr/include/vcflib/join.h
-rw-r--r-- root/root 6353 2019-12-26 14:54 ./usr/include/vcflib/mt19937ar.h
-rw-r--r-- root/root 2155 2019-12-26 14:54 ./usr/include/vcflib/multichoose.h
-rw-r--r-- root/root 3446 2019-12-26 14:54 ./usr/include/vcflib/multipermute.h
-rw-r--r-- root/root 1598 2019-12-26 14:54 ./usr/include/vcflib/split.h
-rw-r--r-- root/root 75369 2019-12-26 14:54 ./usr/include/vcflib/vec128int.h
-rw-r--r-- root/root 13921 2019-12-26 14:54 ./usr/include/vcflib/veclib_types.h
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/libvcflib.so -> libvcflib.so.1
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 283 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libvcflib.pc
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib-dev/
-rw-r--r-- root/root 1535 2019-12-26 14:54 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz
-rw-r--r-- root/root 2042 2019-12-10 11:44 ./usr/share/doc/libvcflib-dev/copyright
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 91 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib-dev
libvcflib-tools-dbgsym_1.0.1+dfsg-2_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 13881048 bytes: control archive=4404 bytes.
3893 bytes, 12 lines control
9211 bytes, 87 lines md5sums
Package: libvcflib-tools-dbgsym
Source: libvcflib
Version: 1.0.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 14953
Depends: libvcflib-tools (= 1.0.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for libvcflib-tools
Build-Ids: 021f4420286135ad6330f394cec635a42262035c 04b9817fb4495a974d5afcdc2b2800955a4a250c 06a005b79b3c031da5a6e7264b17a39eac40c473 076442fc74ce70a0c7418c1ce0934da8ebda124d 0ac097320eb3b27b5082341869e516e2395cdf00 0f21c7eaba16356d16a9a9d86bbf0cf92c9df04a 170c5e04ade073153a20d46a832295f3d90c8d7d 1e18a0196b51481667c74eddbfb09635ef28e678 1fa007eec11cd67edbe546bbe2be67f2d7871e00 2101a9675dbd65a9f7190b5f2f19afc613b81769 230274178131ccc0b7b25beafce132a742c523f0 28aab4084e7ace6ddd0021672f4947c152faae76 2a0068278c522ee898df33d66c1e5da5701b32a0 2b7edb990426fbcf02ecebcd5084e208f459be46 309cef950643dc2467bd7b3743f9ea30053c4b66 32bd6f7b0c92132fc2171279a7921c13065ad6f0 37d159af56951ac1d239c40f1b921e3ba47174a8 3d09af77f631bf4a532a302f1027928773d27a08 41f45dec51e91b41d81e0b3462fe89c93efe75ca 4bd19df276031d7a1ff3abb872172e467b2cab1c 4daadcb7a2b3a4447ec1e92633147bdf7c5b5a4f 6006b0b29d0fd2a6ac2bcd39e2ff54f452dd6f00 60b30fc52eb4d9ac45d308e8befd5ef883264bac 62458b2083b19b1a8c71bd8346d35d0d35709d0e 636213deb3069a6a3425ec60fd2c4a7d51471065 67b7763bce40b71fd5ff599b487ca9e52f4a835c 6b83ae6f53000dd757c205b3e2e5b47d9acb3ad2 6f686708c4392d36dd4cbc483055523aa137cc49 77751c7d180727ed3805724f17fd0503c0755bca 782e7076d8af128d6bc94e0f1998f3de178ea1fa 7a68f1048b27c10a6e3e8b0d63ff3959160dfcf8 7dcc246043d4b5b442bdb400717ceebaf16215c2 7e401925332152312656c6dd0e37e2a228c112a3 815b1260b744d046004cbed38c600f452ee0f990 82a3565f9541fed6b6cd2754ffc6ecce578a23e9 84403c60d06e588817156ab6d1bcdf99b7c445b0 85939cb651ec773157e2d30ba7f4f398e4833b15 85a7fc9649666761e0dd3fb5cea8143d4aa40bef 87aa73d162702830abbfb14ce9acfca643e7c56b 89e7929099df50795a4f0c516f4c9aeb614e3f32 8d8707be94b67a6ea01815cabe89b55cfe1b8af5 8f14261e85c8edf36bc5642ed6586c269e302873 923289123f45c57cc5fb9d7148123ba6a2f0223b 93375e59e24f74abb3b553b0eed8413583074872 938352170cad13baff24773ca3f22e53e1277fda 940ee282a0c793b01eea298a0462ff32d7059c8f 9ce4302d78bfe02dc74a34987792fc55a0fa39b0 9de7ac554e6d50d3aed123efa82056f60ec92fd3 9e55e112262a6c7063ceac9dd98afa87f7bd1740 a2126b9f8215b359ea70c0e20617f5d160145874 a2abfbb03adae6733c8f3482f68a05673b303ff7 a3a33008a88ebd10995a93a6ffd08dc01303ce7d a7900980ab6e2bc753105b663ac8ea354ba817cb a987a8022c6d6743bcc5b4dce4f148bbebce6b98 aa3ca7dcd4406f3f44c537bb73ede9b19e5aa0bb ad6e948133c1c0ebeef8825e526866daf53a12ac aed563ea6dbd1e2ee50475e1b4d244894299a71d b05b5e17a2333c815a0925096194606a05919ae8 b0d35d56f4ddfb1cba40e4cb87f99ff10bce67b1 b277f147ce33697c28b0de56c541d66817fe0bd5 b2a8c0b6d00e69a1ff3f1d38c91f8d4dd2e6d3e1 b7116d076b20776adc7a5357af3a40d74333baf8 b8de496c84eb5c928f686a2568b0c9e514c3da55 ba8c155a58619dbbd7393b5684911ca619587662 be32bab7dcbe782e918ed98a729a8a3a2b1426a5 c431d899397f0a1015f530db53cff9cc7b09ba62 c4e0502e126eab17fdb992db73ce6375cdaa361b ccce198ba6df80b5185bde5f99a86a20818646df ce8a1dfd4539f1d75c09befe77c8f6fd231516d1 cebdc23f086537cbcc1083f48fb314e5377ecd8d d392addf963edfd6af6f270442c81537ee7eea08 d3d5ef074c3bebaef76f48e731951e8aab412e00 db059dac4232cbda3943144ea6ad815d063c6a07 dbb0d07eb06e04f33bcd872ecd7893f90e190c6c de704f88efe1a9133a17bd7763bc8e2308d0cb49 debe70019cbc7b587ea5f88519d5b2f7e7d988b7 e64eaa4f17d67ccbd8711a4aab97b515e5b0e327 e6abc0c62226b6dd70c35f2feb380d1220505691 eae3f3beefa5916ee38add3f38135cd5d2a32627 eca076e398464ab52e882b4cc7c35286f86ad7b6 f472191f5794db8b125c85257fb8700175288280 f82aeaa54b6b41a41d87ed59d15ded92d81c139f fc1a20323469d5e7e24be34fd754a908d49937cd fc4b3011bcf53ce98751bf5f58c60b81cfd2556a fd21f03fc651302368f13cde1580e0028d33978d fde128fb8a41b88daca5e00e21e51df9736f4d7c
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/02/
-rw-r--r-- root/root 179356 2019-12-26 14:54 ./usr/lib/debug/.build-id/02/1f4420286135ad6330f394cec635a42262035c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/04/
-rw-r--r-- root/root 308192 2019-12-26 14:54 ./usr/lib/debug/.build-id/04/b9817fb4495a974d5afcdc2b2800955a4a250c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 117508 2019-12-26 14:54 ./usr/lib/debug/.build-id/06/a005b79b3c031da5a6e7264b17a39eac40c473.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/07/
-rw-r--r-- root/root 205288 2019-12-26 14:54 ./usr/lib/debug/.build-id/07/6442fc74ce70a0c7418c1ce0934da8ebda124d.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/0a/
-rw-r--r-- root/root 69084 2019-12-26 14:54 ./usr/lib/debug/.build-id/0a/c097320eb3b27b5082341869e516e2395cdf00.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/0f/
-rw-r--r-- root/root 46264 2019-12-26 14:54 ./usr/lib/debug/.build-id/0f/21c7eaba16356d16a9a9d86bbf0cf92c9df04a.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/17/
-rw-r--r-- root/root 131408 2019-12-26 14:54 ./usr/lib/debug/.build-id/17/0c5e04ade073153a20d46a832295f3d90c8d7d.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/1e/
-rw-r--r-- root/root 223700 2019-12-26 14:54 ./usr/lib/debug/.build-id/1e/18a0196b51481667c74eddbfb09635ef28e678.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/1f/
-rw-r--r-- root/root 111696 2019-12-26 14:54 ./usr/lib/debug/.build-id/1f/a007eec11cd67edbe546bbe2be67f2d7871e00.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/21/
-rw-r--r-- root/root 99904 2019-12-26 14:54 ./usr/lib/debug/.build-id/21/01a9675dbd65a9f7190b5f2f19afc613b81769.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/23/
-rw-r--r-- root/root 124920 2019-12-26 14:54 ./usr/lib/debug/.build-id/23/0274178131ccc0b7b25beafce132a742c523f0.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/28/
-rw-r--r-- root/root 106528 2019-12-26 14:54 ./usr/lib/debug/.build-id/28/aab4084e7ace6ddd0021672f4947c152faae76.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/2a/
-rw-r--r-- root/root 116480 2019-12-26 14:54 ./usr/lib/debug/.build-id/2a/0068278c522ee898df33d66c1e5da5701b32a0.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/2b/
-rw-r--r-- root/root 127288 2019-12-26 14:54 ./usr/lib/debug/.build-id/2b/7edb990426fbcf02ecebcd5084e208f459be46.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/30/
-rw-r--r-- root/root 303580 2019-12-26 14:54 ./usr/lib/debug/.build-id/30/9cef950643dc2467bd7b3743f9ea30053c4b66.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/32/
-rw-r--r-- root/root 239412 2019-12-26 14:54 ./usr/lib/debug/.build-id/32/bd6f7b0c92132fc2171279a7921c13065ad6f0.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/37/
-rw-r--r-- root/root 97432 2019-12-26 14:54 ./usr/lib/debug/.build-id/37/d159af56951ac1d239c40f1b921e3ba47174a8.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/3d/
-rw-r--r-- root/root 73572 2019-12-26 14:54 ./usr/lib/debug/.build-id/3d/09af77f631bf4a532a302f1027928773d27a08.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/41/
-rw-r--r-- root/root 80192 2019-12-26 14:54 ./usr/lib/debug/.build-id/41/f45dec51e91b41d81e0b3462fe89c93efe75ca.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/4b/
-rw-r--r-- root/root 136036 2019-12-26 14:54 ./usr/lib/debug/.build-id/4b/d19df276031d7a1ff3abb872172e467b2cab1c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/4d/
-rw-r--r-- root/root 279808 2019-12-26 14:54 ./usr/lib/debug/.build-id/4d/aadcb7a2b3a4447ec1e92633147bdf7c5b5a4f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/60/
-rw-r--r-- root/root 252228 2019-12-26 14:54 ./usr/lib/debug/.build-id/60/06b0b29d0fd2a6ac2bcd39e2ff54f452dd6f00.debug
-rw-r--r-- root/root 270800 2019-12-26 14:54 ./usr/lib/debug/.build-id/60/b30fc52eb4d9ac45d308e8befd5ef883264bac.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/62/
-rw-r--r-- root/root 227916 2019-12-26 14:54 ./usr/lib/debug/.build-id/62/458b2083b19b1a8c71bd8346d35d0d35709d0e.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/63/
-rw-r--r-- root/root 101500 2019-12-26 14:54 ./usr/lib/debug/.build-id/63/6213deb3069a6a3425ec60fd2c4a7d51471065.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/67/
-rw-r--r-- root/root 301744 2019-12-26 14:54 ./usr/lib/debug/.build-id/67/b7763bce40b71fd5ff599b487ca9e52f4a835c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/6b/
-rw-r--r-- root/root 93928 2019-12-26 14:54 ./usr/lib/debug/.build-id/6b/83ae6f53000dd757c205b3e2e5b47d9acb3ad2.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/6f/
-rw-r--r-- root/root 233420 2019-12-26 14:54 ./usr/lib/debug/.build-id/6f/686708c4392d36dd4cbc483055523aa137cc49.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/77/
-rw-r--r-- root/root 562536 2019-12-26 14:54 ./usr/lib/debug/.build-id/77/751c7d180727ed3805724f17fd0503c0755bca.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root 563996 2019-12-26 14:54 ./usr/lib/debug/.build-id/78/2e7076d8af128d6bc94e0f1998f3de178ea1fa.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/7a/
-rw-r--r-- root/root 206332 2019-12-26 14:54 ./usr/lib/debug/.build-id/7a/68f1048b27c10a6e3e8b0d63ff3959160dfcf8.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/7d/
-rw-r--r-- root/root 121072 2019-12-26 14:54 ./usr/lib/debug/.build-id/7d/cc246043d4b5b442bdb400717ceebaf16215c2.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/7e/
-rw-r--r-- root/root 85160 2019-12-26 14:54 ./usr/lib/debug/.build-id/7e/401925332152312656c6dd0e37e2a228c112a3.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/81/
-rw-r--r-- root/root 230444 2019-12-26 14:54 ./usr/lib/debug/.build-id/81/5b1260b744d046004cbed38c600f452ee0f990.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/82/
-rw-r--r-- root/root 153988 2019-12-26 14:54 ./usr/lib/debug/.build-id/82/a3565f9541fed6b6cd2754ffc6ecce578a23e9.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/84/
-rw-r--r-- root/root 149656 2019-12-26 14:54 ./usr/lib/debug/.build-id/84/403c60d06e588817156ab6d1bcdf99b7c445b0.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root 57600 2019-12-26 14:54 ./usr/lib/debug/.build-id/85/939cb651ec773157e2d30ba7f4f398e4833b15.debug
-rw-r--r-- root/root 109608 2019-12-26 14:54 ./usr/lib/debug/.build-id/85/a7fc9649666761e0dd3fb5cea8143d4aa40bef.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/87/
-rw-r--r-- root/root 113980 2019-12-26 14:54 ./usr/lib/debug/.build-id/87/aa73d162702830abbfb14ce9acfca643e7c56b.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/89/
-rw-r--r-- root/root 112856 2019-12-26 14:54 ./usr/lib/debug/.build-id/89/e7929099df50795a4f0c516f4c9aeb614e3f32.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/8d/
-rw-r--r-- root/root 619760 2019-12-26 14:54 ./usr/lib/debug/.build-id/8d/8707be94b67a6ea01815cabe89b55cfe1b8af5.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/8f/
-rw-r--r-- root/root 98572 2019-12-26 14:54 ./usr/lib/debug/.build-id/8f/14261e85c8edf36bc5642ed6586c269e302873.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/92/
-rw-r--r-- root/root 57996 2019-12-26 14:54 ./usr/lib/debug/.build-id/92/3289123f45c57cc5fb9d7148123ba6a2f0223b.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/93/
-rw-r--r-- root/root 88420 2019-12-26 14:54 ./usr/lib/debug/.build-id/93/375e59e24f74abb3b553b0eed8413583074872.debug
-rw-r--r-- root/root 464628 2019-12-26 14:54 ./usr/lib/debug/.build-id/93/8352170cad13baff24773ca3f22e53e1277fda.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/94/
-rw-r--r-- root/root 84520 2019-12-26 14:54 ./usr/lib/debug/.build-id/94/0ee282a0c793b01eea298a0462ff32d7059c8f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/9c/
-rw-r--r-- root/root 76380 2019-12-26 14:54 ./usr/lib/debug/.build-id/9c/e4302d78bfe02dc74a34987792fc55a0fa39b0.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/9d/
-rw-r--r-- root/root 80064 2019-12-26 14:54 ./usr/lib/debug/.build-id/9d/e7ac554e6d50d3aed123efa82056f60ec92fd3.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root 46296 2019-12-26 14:54 ./usr/lib/debug/.build-id/9e/55e112262a6c7063ceac9dd98afa87f7bd1740.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a2/
-rw-r--r-- root/root 104004 2019-12-26 14:54 ./usr/lib/debug/.build-id/a2/126b9f8215b359ea70c0e20617f5d160145874.debug
-rw-r--r-- root/root 452716 2019-12-26 14:54 ./usr/lib/debug/.build-id/a2/abfbb03adae6733c8f3482f68a05673b303ff7.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a3/
-rw-r--r-- root/root 186160 2019-12-26 14:54 ./usr/lib/debug/.build-id/a3/a33008a88ebd10995a93a6ffd08dc01303ce7d.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a7/
-rw-r--r-- root/root 58848 2019-12-26 14:54 ./usr/lib/debug/.build-id/a7/900980ab6e2bc753105b663ac8ea354ba817cb.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a9/
-rw-r--r-- root/root 118652 2019-12-26 14:54 ./usr/lib/debug/.build-id/a9/87a8022c6d6743bcc5b4dce4f148bbebce6b98.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/aa/
-rw-r--r-- root/root 71236 2019-12-26 14:54 ./usr/lib/debug/.build-id/aa/3ca7dcd4406f3f44c537bb73ede9b19e5aa0bb.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ad/
-rw-r--r-- root/root 71104 2019-12-26 14:54 ./usr/lib/debug/.build-id/ad/6e948133c1c0ebeef8825e526866daf53a12ac.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ae/
-rw-r--r-- root/root 87312 2019-12-26 14:54 ./usr/lib/debug/.build-id/ae/d563ea6dbd1e2ee50475e1b4d244894299a71d.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/b0/
-rw-r--r-- root/root 206588 2019-12-26 14:54 ./usr/lib/debug/.build-id/b0/5b5e17a2333c815a0925096194606a05919ae8.debug
-rw-r--r-- root/root 153820 2019-12-26 14:54 ./usr/lib/debug/.build-id/b0/d35d56f4ddfb1cba40e4cb87f99ff10bce67b1.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/b2/
-rw-r--r-- root/root 191292 2019-12-26 14:54 ./usr/lib/debug/.build-id/b2/77f147ce33697c28b0de56c541d66817fe0bd5.debug
-rw-r--r-- root/root 154144 2019-12-26 14:54 ./usr/lib/debug/.build-id/b2/a8c0b6d00e69a1ff3f1d38c91f8d4dd2e6d3e1.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/b7/
-rw-r--r-- root/root 288188 2019-12-26 14:54 ./usr/lib/debug/.build-id/b7/116d076b20776adc7a5357af3a40d74333baf8.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/b8/
-rw-r--r-- root/root 94520 2019-12-26 14:54 ./usr/lib/debug/.build-id/b8/de496c84eb5c928f686a2568b0c9e514c3da55.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root 219356 2019-12-26 14:54 ./usr/lib/debug/.build-id/ba/8c155a58619dbbd7393b5684911ca619587662.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/be/
-rw-r--r-- root/root 97056 2019-12-26 14:54 ./usr/lib/debug/.build-id/be/32bab7dcbe782e918ed98a729a8a3a2b1426a5.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/c4/
-rw-r--r-- root/root 145500 2019-12-26 14:54 ./usr/lib/debug/.build-id/c4/31d899397f0a1015f530db53cff9cc7b09ba62.debug
-rw-r--r-- root/root 85952 2019-12-26 14:54 ./usr/lib/debug/.build-id/c4/e0502e126eab17fdb992db73ce6375cdaa361b.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/cc/
-rw-r--r-- root/root 162832 2019-12-26 14:54 ./usr/lib/debug/.build-id/cc/ce198ba6df80b5185bde5f99a86a20818646df.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ce/
-rw-r--r-- root/root 146100 2019-12-26 14:54 ./usr/lib/debug/.build-id/ce/8a1dfd4539f1d75c09befe77c8f6fd231516d1.debug
-rw-r--r-- root/root 498648 2019-12-26 14:54 ./usr/lib/debug/.build-id/ce/bdc23f086537cbcc1083f48fb314e5377ecd8d.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/d3/
-rw-r--r-- root/root 95964 2019-12-26 14:54 ./usr/lib/debug/.build-id/d3/92addf963edfd6af6f270442c81537ee7eea08.debug
-rw-r--r-- root/root 86160 2019-12-26 14:54 ./usr/lib/debug/.build-id/d3/d5ef074c3bebaef76f48e731951e8aab412e00.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root 216876 2019-12-26 14:54 ./usr/lib/debug/.build-id/db/059dac4232cbda3943144ea6ad815d063c6a07.debug
-rw-r--r-- root/root 104548 2019-12-26 14:54 ./usr/lib/debug/.build-id/db/b0d07eb06e04f33bcd872ecd7893f90e190c6c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root 35920 2019-12-26 14:54 ./usr/lib/debug/.build-id/de/704f88efe1a9133a17bd7763bc8e2308d0cb49.debug
-rw-r--r-- root/root 343268 2019-12-26 14:54 ./usr/lib/debug/.build-id/de/be70019cbc7b587ea5f88519d5b2f7e7d988b7.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/e6/
-rw-r--r-- root/root 138928 2019-12-26 14:54 ./usr/lib/debug/.build-id/e6/4eaa4f17d67ccbd8711a4aab97b515e5b0e327.debug
-rw-r--r-- root/root 135976 2019-12-26 14:54 ./usr/lib/debug/.build-id/e6/abc0c62226b6dd70c35f2feb380d1220505691.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ea/
-rw-r--r-- root/root 132752 2019-12-26 14:54 ./usr/lib/debug/.build-id/ea/e3f3beefa5916ee38add3f38135cd5d2a32627.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ec/
-rw-r--r-- root/root 39472 2019-12-26 14:54 ./usr/lib/debug/.build-id/ec/a076e398464ab52e882b4cc7c35286f86ad7b6.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/f4/
-rw-r--r-- root/root 32940 2019-12-26 14:54 ./usr/lib/debug/.build-id/f4/72191f5794db8b125c85257fb8700175288280.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/f8/
-rw-r--r-- root/root 113828 2019-12-26 14:54 ./usr/lib/debug/.build-id/f8/2aeaa54b6b41a41d87ed59d15ded92d81c139f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root 241108 2019-12-26 14:54 ./usr/lib/debug/.build-id/fc/1a20323469d5e7e24be34fd754a908d49937cd.debug
-rw-r--r-- root/root 161256 2019-12-26 14:54 ./usr/lib/debug/.build-id/fc/4b3011bcf53ce98751bf5f58c60b81cfd2556a.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/fd/
-rw-r--r-- root/root 81808 2019-12-26 14:54 ./usr/lib/debug/.build-id/fd/21f03fc651302368f13cde1580e0028d33978d.debug
-rw-r--r-- root/root 140076 2019-12-26 14:54 ./usr/lib/debug/.build-id/fd/e128fb8a41b88daca5e00e21e51df9736f4d7c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 740524 2019-12-26 14:54 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/libvcflib-tools.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib-tools-dbgsym -> libvcflib-tools
libvcflib-tools_1.0.1+dfsg-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 512184 bytes: control archive=4604 bytes.
1523 bytes, 29 lines control
9220 bytes, 138 lines md5sums
Package: libvcflib-tools
Source: libvcflib
Version: 1.0.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3145
Depends: libc6 (>= 2.15), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc1 (>= 1:3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.1+dfsg), perl:any, python3, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase
Suggests: r-cran-pracma
Breaks: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Replaces: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Section: science
Priority: optional
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains several tools using the library.
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/bin/
-rwxr-xr-x root/root 34520 2019-12-26 14:54 ./usr/bin/vcf2tsv
-rwxr-xr-x root/root 51048 2019-12-26 14:54 ./usr/bin/vcffilter
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/bin/vcfkeepinfo
-rwxr-xr-x root/root 404 2019-12-10 11:34 ./usr/bin/vcflib
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/bin/vcfstreamsort -> ../lib/vcflib/bin/vcfstreamsort
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/bin/vcfuniq -> ../lib/vcflib/bin/vcfuniq
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/R/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/
-rw-r--r-- root/root 519 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotBfst.R
-rw-r--r-- root/root 566 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotHapLrt.R
-rw-r--r-- root/root 646 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotHaplotypes.R
-rw-r--r-- root/root 511 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotPfst.R
-rw-r--r-- root/root 1314 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotSmoothed.R
-rw-r--r-- root/root 483 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotWCfst.R
-rw-r--r-- root/root 474 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotXPEHH.R
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/vcflib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/vcflib/bin/
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/abba-baba
-rwxr-xr-x root/root 46744 2019-12-26 14:54 ./usr/lib/vcflib/bin/bFst
-rwxr-xr-x root/root 171 2019-12-26 14:54 ./usr/lib/vcflib/bin/bed2region
-rwxr-xr-x root/root 234 2019-12-26 14:54 ./usr/lib/vcflib/bin/bgziptabix
-rwxr-xr-x root/root 13976 2019-12-26 14:54 ./usr/lib/vcflib/bin/dumpContigsFromHeader
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/genotypeSummary
-rwxr-xr-x root/root 46744 2019-12-26 14:54 ./usr/lib/vcflib/bin/hapLrt
-rwxr-xr-x root/root 54936 2019-12-26 14:54 ./usr/lib/vcflib/bin/iHS
-rwxr-xr-x root/root 50840 2019-12-26 14:54 ./usr/lib/vcflib/bin/meltEHH
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/normalize-iHS
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/pFst
-rwxr-xr-x root/root 50844 2019-12-26 14:54 ./usr/lib/vcflib/bin/pVst
-rwxr-xr-x root/root 13976 2019-12-26 14:54 ./usr/lib/vcflib/bin/permuteGPAT++
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/permuteSmooth
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/plotHaps
-rwxr-xr-x root/root 6005 2019-12-26 14:54 ./usr/lib/vcflib/bin/plot_roc.r
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/popStats
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/segmentFst
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/segmentIhs
-rwxr-xr-x root/root 50840 2019-12-26 14:54 ./usr/lib/vcflib/bin/sequenceDiversity
-rwxr-xr-x root/root 30488 2019-12-26 14:54 ./usr/lib/vcflib/bin/smoother
-rwxr-xr-x root/root 437 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2bed.py
-rwxr-xr-x root/root 34504 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2dag
-rwxr-xr-x root/root 46840 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2fasta
-rwxr-xr-x root/root 3626 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2sqlite.py
-rwxr-xr-x root/root 34520 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2tsv
-rwxr-xr-x root/root 260 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf_strip_extra_headers
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfaddinfo
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfafpath
-rwxr-xr-x root/root 87816 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfallelicprimitives
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfaltcount
-rwxr-xr-x root/root 75496 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfannotate
-rwxr-xr-x root/root 75416 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfannotategenotypes
-rwxr-xr-x root/root 371 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfbiallelic
-rwxr-xr-x root/root 34488 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfbreakmulti
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcat
-rwxr-xr-x root/root 22264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcheck
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfclassify
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcleancomplex
-rwxr-xr-x root/root 225 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfclearid
-rwxr-xr-x root/root 225 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfclearinfo
-rwxr-xr-x root/root 50904 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcombine
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcommonsamples
-rwxr-xr-x root/root 522 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcomplex
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcountalleles
-rwxr-xr-x root/root 46776 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcreatemulti
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfdistance
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfecho
-rwxr-xr-x root/root 34520 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfentropy
-rwxr-xr-x root/root 22296 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfevenregions
-rwxr-xr-x root/root 51048 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcffilter
-rwxr-xr-x root/root 315 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcffirstheader
-rwxr-xr-x root/root 30360 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcffixup
-rwxr-xr-x root/root 38552 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfflatten
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgeno2alleles
-rwxr-xr-x root/root 75512 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgeno2haplo
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenosamplenames
-rwxr-xr-x root/root 34456 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenosummarize
-rwxr-xr-x root/root 59032 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenotypecompare
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenotypes
-rwxr-xr-x root/root 26328 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfglbound
-rwxr-xr-x root/root 30408 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfglxgt
-rwxr-xr-x root/root 334 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgtcompare.sh
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfhetcount
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfhethomratio
-rwxr-xr-x root/root 1759 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfindelproximity
-rwxr-xr-x root/root 502 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfindels
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfindex
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfinfo2qual
-rwxr-xr-x root/root 34600 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfinfosummarize
-rwxr-xr-x root/root 83896 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfintersect
-rwxr-xr-x root/root 1157 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfjoincalls
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfkeepgeno
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfkeepinfo
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfkeepsamples
-rwxr-xr-x root/root 50840 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfld
-rwxr-xr-x root/root 55000 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfleftalign
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcflength
-rwxr-xr-x root/root 374 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfmultiallelic
-rwxr-xr-x root/root 444 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfmultiway
-rwxr-xr-x root/root 777 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfmultiwayscripts
-rwxr-xr-x root/root 623 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnobiallelicsnps
-rwxr-xr-x root/root 426 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnoindels
-rwxr-xr-x root/root 22248 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnormalizesvs
-rwxr-xr-x root/root 518 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnosnps
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnull2ref
-rwxr-xr-x root/root 638 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnulldotslashdot
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnumalt
-rwxr-xr-x root/root 30408 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfoverlay
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfparsealts
-rwxr-xr-x root/root 22065 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r
-rwxr-xr-x root/root 179 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh
-rwxr-xr-x root/root 3946 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplotsitediscrepancy.r
-rwxr-xr-x root/root 171 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplottstv.sh
-rwxr-xr-x root/root 22232 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfprimers
-rwxr-xr-x root/root 1845 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r
-rwxr-xr-x root/root 518 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfqual2info
-rwxr-xr-x root/root 686 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfqualfilter
-rwxr-xr-x root/root 30360 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfrandom
-rwxr-xr-x root/root 34556 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfrandomsample
-rwxr-xr-x root/root 843 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce
-rwxr-xr-x root/root 989 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce_and_cut
-rwxr-xr-x root/root 782 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce_pipe
-rwxr-xr-x root/root 835 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce_uncompressed
-rwxr-xr-x root/root 42840 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremap
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremoveaberrantgenotypes
-rwxr-xr-x root/root 556 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremovenonATGC
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremovesamples
-rwxr-xr-x root/root 79608 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfroc
-rwxr-xr-x root/root 30488 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsample2info
-rwxr-xr-x root/root 38600 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsamplediff
-rwxr-xr-x root/root 13976 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsamplenames
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsitesummarize
-rwxr-xr-x root/root 521 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsnps
-rwxr-xr-x root/root 83 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsort
-rwxr-xr-x root/root 59192 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfstats
-rwxr-xr-x root/root 46808 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfstreamsort
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfuniq
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfuniqalleles
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfunphase
-rwxr-xr-x root/root 5459 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfvarstats
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/wcFst
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib-tools/
-rw-r--r-- root/root 1535 2019-12-26 14:54 ./usr/share/doc/libvcflib-tools/changelog.Debian.gz
-rw-r--r-- root/root 2042 2019-12-10 11:44 ./usr/share/doc/libvcflib-tools/copyright
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 93 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib-tools
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/man/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/man/man1/
-rw-r--r-- root/root 505 2019-12-26 14:54 ./usr/share/man/man1/vcflib.1.gz
libvcflib1-dbgsym_1.0.1+dfsg-2_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 1416928 bytes: control archive=556 bytes.
409 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libvcflib1-dbgsym
Source: libvcflib
Version: 1.0.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1473
Depends: libvcflib1 (= 1.0.1+dfsg-2)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libvcflib1
Build-Ids: a8b3771ec47831133da26f13ab9230bd597e1292
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a8/
-rw-r--r-- root/root 1497700 2019-12-26 14:54 ./usr/lib/debug/.build-id/a8/b3771ec47831133da26f13ab9230bd597e1292.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib1-dbgsym -> libvcflib1
libvcflib1_1.0.1+dfsg-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 126860 bytes: control archive=1212 bytes.
1250 bytes, 25 lines control
298 bytes, 4 lines md5sums
39 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libvcflib1
Source: libvcflib
Version: 1.0.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 340
Depends: libc6 (>= 2.15), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc1 (>= 1:3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 329924 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/libvcflib.so.1
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib1/
-rw-r--r-- root/root 1535 2019-12-26 14:54 ./usr/share/doc/libvcflib1/changelog.Debian.gz
-rw-r--r-- root/root 2042 2019-12-10 11:44 ./usr/share/doc/libvcflib1/copyright
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 88 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib1
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 200456
Build-Time: 1281
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 443
Job: libvcflib_1.0.1+dfsg-2
Machine Architecture: armhf
Package: libvcflib
Package-Time: 1781
Source-Version: 1.0.1+dfsg-2
Space: 200456
Status: successful
Version: 1.0.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2020-01-02T11:38:44Z
Build needed 00:29:41, 200456k disc space