libvcflib →
1.0.1+dfsg-2+b1 →
armhf → 2020-01-19 11:02:39
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| libvcflib 1.0.1+dfsg-2+b1 (armhf) Sun, 19 Jan 2020 10:53:49 +0000 |
+==============================================================================+
Package: libvcflib
Version: 1.0.1+dfsg-2+b1
Source Version: 1.0.1+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-2fdee311-3cce-47c7-af2c-af2b86cacc01' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.3 MB in 10s (2460 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libvcflib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libvcflib.git
Please use:
git clone https://salsa.debian.org/med-team/libvcflib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 7543 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.1+dfsg-2 (dsc) [2311 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.1+dfsg-2 (tar) [7528 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.1+dfsg-2 (diff) [12.4 kB]
Fetched 7543 kB in 2s (4327 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libvcflib-SStSiG/libvcflib-1.0.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libvcflib-SStSiG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3ohnwy/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3ohnwy/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3ohnwy/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (9996 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12207 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-exec, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl
Filtered Build-Depends: debhelper-compat (= 12), dh-exec, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl
dpkg-deb: building package 'sbuild-build-depends-libvcflib-dummy' in '/<<BUILDDIR>>/resolver-3ohnwy/apt_archive/sbuild-build-depends-libvcflib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libvcflib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Sources [608 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ Packages [694 B]
Fetched 2635 B in 0s (12.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libvcflib build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libdisorder-dev
libdisorder0 libelf1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts3 libicu63 libipc-run3-perl libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libsmithwaterman-dev
libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev libssw0
libsub-override-perl libtabixpp-dev libtabixpp0 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db markdown pkg-config po-debconf sensible-utils
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc
krb5-user liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix
libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libdisorder-dev
libdisorder0 libelf1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts3 libicu63 libipc-run3-perl libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libsmithwaterman-dev
libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev libssw0
libsub-override-perl libtabixpp-dev libtabixpp0 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db markdown pkg-config po-debconf
sbuild-build-depends-libvcflib-dummy sensible-utils zlib1g-dev
0 upgraded, 68 newly installed, 0 to remove and 1 not upgraded.
Need to get 27.4 MB of archives.
After this operation, 83.7 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3ohnwy/apt_archive ./ sbuild-build-depends-libvcflib-dummy 0.invalid.0 [980 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-3 [262 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-3 [112 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-3 [66.8 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.3 [174 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.3 [1019 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2 [25.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-1 [78.0 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-1 [4568 B]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-1 [4156 B]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libfastahack0 armhf 1.0.0+dfsg-5 [20.1 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libfastahack-dev armhf 1.0.0+dfsg-5 [23.6 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-2 [327 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.10.2-2 [4784 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libipc-run3-perl all 0.048-1 [37.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman0 armhf 0.0+git20160702.2610e25-7 [30.5 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman-dev armhf 0.0+git20160702.2610e25-7 [34.3 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libssw0 armhf 1.1-7 [19.8 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libssw-dev armhf 1.1-7 [23.3 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp0 armhf 1.1.0-1+b1 [8336 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp-dev armhf 1.1.0-1+b1 [7884 B]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf markdown all 1.0.1-10 [17.4 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 27.4 MB in 6s (4510 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12207 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../01-libtinfo5_6.1+20191019-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.1+20191019-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../04-groff-base_1.22.4-4_armhf.deb ...
Unpacking groff-base (1.22.4-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../05-libpipeline1_1.5.2-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.2-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../06-man-db_2.9.0-2_armhf.deb ...
Unpacking man-db (2.9.0-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../07-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../08-libmagic-mgc_1%3a5.38-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../09-libmagic1_1%3a5.38-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-3) ...
Selecting previously unselected package file.
Preparing to unpack .../10-file_1%3a5.38-3_armhf.deb ...
Unpacking file (1:5.38-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../11-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../12-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../13-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../14-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../17-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package libtool.
Preparing to unpack .../18-libtool_2.4.6-11_all.deb ...
Unpacking libtool (2.4.6-11) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../19-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../20-libdebhelper-perl_12.7.3_all.deb ...
Unpacking libdebhelper-perl (12.7.3) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../21-libarchive-zip-perl_1.67-1_all.deb ...
Unpacking libarchive-zip-perl (1.67-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../22-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.6.3-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.6.3-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../24-dh-strip-nondeterminism_1.6.3-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.6.3-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../25-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../26-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../27-libglib2.0-0_2.62.4-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.62.4-1) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../28-libicu63_63.2-2_armhf.deb ...
Unpacking libicu63:armhf (63.2-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../29-libxml2_2.9.4+dfsg1-8_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-8) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../30-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../31-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../32-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../33-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../34-debhelper_12.7.3_all.deb ...
Unpacking debhelper (12.7.3) ...
Selecting previously unselected package dh-exec.
Preparing to unpack .../35-dh-exec_0.23.2_armhf.deb ...
Unpacking dh-exec (0.23.2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../36-libbrotli1_1.0.7-6_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-6) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../37-libbz2-dev_1.0.8-2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../38-libkeyutils1_1.6-6_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6-6) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../39-libkrb5support0_1.17-6+b1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-6+b1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../40-libk5crypto3_1.17-6+b1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-6+b1) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../41-libssl1.1_1.1.1d-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1d-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../42-libkrb5-3_1.17-6+b1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-6+b1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../43-libgssapi-krb5-2_1.17-6+b1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-6+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../44-libnghttp2-14_1.40.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.40.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../45-libpsl5_0.20.2-2_armhf.deb ...
Unpacking libpsl5:armhf (0.20.2-2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../46-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../47-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../48-libcurl3-gnutls_7.67.0-2_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.67.0-2) ...
Selecting previously unselected package libdeflate0.
Preparing to unpack .../49-libdeflate0_1.5-1_armhf.deb ...
Unpacking libdeflate0 (1.5-1) ...
Selecting previously unselected package libdisorder0:armhf.
Preparing to unpack .../50-libdisorder0_0.0.2+git20130809.8062ee1-1_armhf.deb ...
Unpacking libdisorder0:armhf (0.0.2+git20130809.8062ee1-1) ...
Selecting previously unselected package libdisorder-dev:armhf.
Preparing to unpack .../51-libdisorder-dev_0.0.2+git20130809.8062ee1-1_armhf.deb ...
Unpacking libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-1) ...
Selecting previously unselected package libfastahack0.
Preparing to unpack .../52-libfastahack0_1.0.0+dfsg-5_armhf.deb ...
Unpacking libfastahack0 (1.0.0+dfsg-5) ...
Selecting previously unselected package libfastahack-dev.
Preparing to unpack .../53-libfastahack-dev_1.0.0+dfsg-5_armhf.deb ...
Unpacking libfastahack-dev (1.0.0+dfsg-5) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../54-libhts3_1.10.2-2_armhf.deb ...
Unpacking libhts3:armhf (1.10.2-2) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../55-liblzma-dev_5.2.4-1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.4-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../56-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../57-libhts-dev_1.10.2-2_armhf.deb ...
Unpacking libhts-dev:armhf (1.10.2-2) ...
Selecting previously unselected package libipc-run3-perl.
Preparing to unpack .../58-libipc-run3-perl_0.048-1_all.deb ...
Unpacking libipc-run3-perl (0.048-1) ...
Selecting previously unselected package libsmithwaterman0.
Preparing to unpack .../59-libsmithwaterman0_0.0+git20160702.2610e25-7_armhf.deb ...
Unpacking libsmithwaterman0 (0.0+git20160702.2610e25-7) ...
Selecting previously unselected package libsmithwaterman-dev.
Preparing to unpack .../60-libsmithwaterman-dev_0.0+git20160702.2610e25-7_armhf.deb ...
Unpacking libsmithwaterman-dev (0.0+git20160702.2610e25-7) ...
Selecting previously unselected package libssw0:armhf.
Preparing to unpack .../61-libssw0_1.1-7_armhf.deb ...
Unpacking libssw0:armhf (1.1-7) ...
Selecting previously unselected package libssw-dev:armhf.
Preparing to unpack .../62-libssw-dev_1.1-7_armhf.deb ...
Unpacking libssw-dev:armhf (1.1-7) ...
Selecting previously unselected package libtabixpp0:armhf.
Preparing to unpack .../63-libtabixpp0_1.1.0-1+b1_armhf.deb ...
Unpacking libtabixpp0:armhf (1.1.0-1+b1) ...
Selecting previously unselected package libtabixpp-dev:armhf.
Preparing to unpack .../64-libtabixpp-dev_1.1.0-1+b1_armhf.deb ...
Unpacking libtabixpp-dev:armhf (1.1.0-1+b1) ...
Selecting previously unselected package markdown.
Preparing to unpack .../65-markdown_1.0.1-10_all.deb ...
Unpacking markdown (1.0.1-10) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../66-pkg-config_0.29-6_armhf.deb ...
Unpacking pkg-config (0.29-6) ...
Selecting previously unselected package sbuild-build-depends-libvcflib-dummy.
Preparing to unpack .../67-sbuild-build-depends-libvcflib-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-libvcflib-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libdisorder0:armhf (0.0.2+git20130809.8062ee1-1) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libmagic-mgc (1:5.38-3) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.4-1) ...
No schema files found: doing nothing.
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libdebhelper-perl (12.7.3) ...
Setting up libbrotli1:armhf (1.0.7-6) ...
Setting up libsmithwaterman0 (0.0+git20160702.2610e25-7) ...
Setting up libnghttp2-14:armhf (1.40.0-1) ...
Setting up libmagic1:armhf (1:5.38-3) ...
Setting up libdeflate0 (1.5-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-3) ...
Setting up libfastahack0 (1.0.0+dfsg-5) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up libfastahack-dev (1.0.0+dfsg-5) ...
Setting up autotools-dev (20180224.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up pkg-config (0.29-6) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libipc-run3-perl (0.048-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libssw0:armhf (1.1-7) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up markdown (1.0.1-10) ...
Setting up libbz2-dev:armhf (1.0.8-2) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-1) ...
Setting up libssw-dev:armhf (1.1-7) ...
Setting up libtool (2.4.6-11) ...
Setting up m4 (1.4.18-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libsmithwaterman-dev (0.0+git20160702.2610e25-7) ...
Setting up autoconf (2.69-11) ...
Setting up dh-strip-nondeterminism (1.6.3-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libhts3:armhf (1.10.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.10.2-2) ...
Setting up libtabixpp0:armhf (1.1.0-1+b1) ...
Setting up libtabixpp-dev:armhf (1.1.0-1+b1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.3) ...
Setting up dh-exec (0.23.2) ...
Setting up sbuild-build-depends-libvcflib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9.1 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-3 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdeflate0_1.5-1 libdisorder-dev_0.0.2+git20130809.8062ee1-1 libdisorder0_0.0.2+git20130809.8062ee1-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfastahack-dev_1.0.0+dfsg-5 libfastahack0_1.0.0+dfsg-5 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-2 libhts3_1.10.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libipc-run3-perl_0.048-1 libisl22_0.22-2 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-3 libmagic1_1:5.38-3 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsmithwaterman-dev_0.0+git20160702.2610e25-7 libsmithwaterman0_0.0+git20160702.2610e25-7 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libssw-dev_1.1-7 libssw0_1.1-7 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libtabixpp-dev_1.1.0-1+b1 libtabixpp0_1.1.0-1+b1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 markdown_1.0.1-10 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libvcflib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Dec 26 14:55:40 2019 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libvcflib_1.0.1+dfsg-2.dsc
dpkg-source: info: extracting libvcflib in /<<BUILDDIR>>/libvcflib-1.0.1+dfsg
dpkg-source: info: unpacking libvcflib_1.0.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking libvcflib_1.0.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_fsom
dpkg-source: info: applying use_debian_packaged_tabixpp.patch
dpkg-source: info: applying use_debian_packaged_smithwaterman.patch
dpkg-source: info: applying use_debian_packaged_fastahack.patch
dpkg-source: info: applying use_debian_packaged_libssw.patch
dpkg-source: info: applying shared_lib.patch
dpkg-source: info: applying pkg-config.patch
dpkg-source: info: applying fix_ssw_cpp_header_name.patch
dpkg-source: info: applying dont_link_pthread
dpkg-source: info: applying override_version
dpkg-source: info: applying hardening-flags
dpkg-source: info: applying no_libVCFH
dpkg-source: info: applying disorder_include
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.0.1+dfsg-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-2fdee311-3cce-47c7-af2c-af2b86cacc01
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libvcflib
dpkg-buildpackage: info: source version 1.0.1+dfsg-2+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
rm -f bin/vcfecho bin/vcfnormalizesvs bin/dumpContigsFromHeader bin/bFst bin/pVst bin/hapLrt bin/popStats bin/wcFst bin/iHS bin/segmentFst bin/segmentIhs bin/genotypeSummary bin/sequenceDiversity bin/pFst bin/smoother bin/vcfld bin/plotHaps bin/abba-baba bin/permuteGPAT++ bin/permuteSmooth bin/normalize-iHS bin/meltEHH bin/vcfaltcount bin/vcfhetcount bin/vcfhethomratio bin/vcffilter bin/vcf2tsv bin/vcfgenotypes bin/vcfannotategenotypes bin/vcfcommonsamples bin/vcfremovesamples bin/vcfkeepsamples bin/vcfsamplenames bin/vcfgenotypecompare bin/vcffixup bin/vcfclassify bin/vcfsamplediff bin/vcfremoveaberrantgenotypes bin/vcfrandom bin/vcfparsealts bin/vcfstats bin/vcfflatten bin/vcfprimers bin/vcfnumalt bin/vcfcleancomplex bin/vcfintersect bin/vcfannotate bin/vcfallelicprimitives bin/vcfoverlay bin/vcfaddinfo bin/vcfkeepinfo bin/vcfkeepgeno bin/vcfafpath bin/vcfcountalleles bin/vcflength bin/vcfdistance bin/vcfrandomsample bin/vcfentropy bin/vcfglxgt bin/vcfroc bin/vcfcheck bin/vcfstreamsort bin/vcfuniq bin/vcfuniqalleles bin/vcfremap bin/vcf2fasta bin/vcfsitesummarize bin/vcfbreakmulti bin/vcfcreatemulti bin/vcfevenregions bin/vcfcat bin/vcfgenosummarize bin/vcfgenosamplenames bin/vcfgeno2haplo bin/vcfleftalign bin/vcfcombine bin/vcfgeno2alleles bin/vcfindex bin/vcf2dag bin/vcfsample2info bin/vcfqual2info bin/vcfinfo2qual bin/vcfglbound bin/vcfunphase bin/vcfnull2ref bin/vcfinfosummarize src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o
rm -f libvcflib.so*
rm -f -r bin
rm -f -r lib
rm -f -r include
rm -f -r obj
make clean -C multichoose
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
rm -f cmultichoose
rm -f multichoose
rm -f multipermute
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
make clean -C test
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/test'
rm -f tests/main
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/test'
make clean -C filevercmp
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
rm -f filevercmp
rm -f filevercmp.o
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
make clean -C intervaltree
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
rm -rf interval_tree_test stage
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_clean
find . -name "*.o" -delete
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
if [ ! -d bin ]; then mkdir -p bin; fi
if [ ! -d lib ]; then mkdir -p lib; fi
if [ ! -d include ]; then mkdir -p include; fi
if [ ! -d obj ]; then mkdir -p obj; fi
cd multichoose && LDFLAGS="-Wl,-z,relro -Wl,-z,now" make && cp -f *.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
cd filevercmp && LDFLAGS="-Wl,-z,relro -Wl,-z,now" make && cp -f *.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/ && cp -f *.o /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
cd intervaltree && LDFLAGS="-Wl,-z,relro -Wl,-z,now" make && cp -f *.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
make[3]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now multichoose.cpp -o multichoose
make[3]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filevercmp.c
make[3]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -Wall -Wl,-z,relro -Wl,-z,now -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm interval_tree_test.cpp -std=c++0x -o interval_tree_test
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now multipermute.cpp -o multipermute
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o filevercmp main.c filevercmp.o
make[3]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/filevercmp'
make[3]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/multichoose'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/Variant.o src/Variant.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/rnglib.o src/rnglib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/var.o src/var.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/pdflib.o src/pdflib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual void genotype::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void pooled::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/cdflib.o src/cdflib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/split.o src/split.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm && cp -f src/*.h* /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/include/
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Catch::SectionEndInfo&}; _Tp = Catch::SectionEndInfo; _Alloc = std::allocator<Catch::SectionEndInfo>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Catch::SectionEndInfo>::iterator' {aka '__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void Catch::RunContext::sectionEndedEarly(const Catch::SectionEndInfo&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In destructor 'Catch::Section::~Section()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Interval<unsigned int, double>&}; _Tp = Interval<unsigned int, double>; _Alloc = std::allocator<Interval<unsigned int, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void IntervalTree<Scalar, Value>::visit_near(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::visit_overlapping(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = unsigned int; Value = double]::<lambda(const interval&)>; Scalar = unsigned int; Value = double]::<lambda(const interval&)>; Scalar = unsigned int; Value = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'IntervalTree<Scalar, Value>::interval_vector IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = unsigned int; Value = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Interval<double, unsigned int>&}; _Tp = Interval<double, unsigned int>; _Alloc = std::allocator<Interval<double, unsigned int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void IntervalTree<Scalar, Value>::visit_near(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::visit_overlapping(const Scalar&, const Scalar&, UnaryFunction) const [with UnaryFunction = IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = double; Value = unsigned int]::<lambda(const interval&)>; Scalar = double; Value = unsigned int]::<lambda(const interval&)>; Scalar = double; Value = unsigned int]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'IntervalTree<Scalar, Value>::interval_vector IntervalTree<Scalar, Value>::findOverlapping(const Scalar&, const Scalar&) const [with Scalar = double; Value = unsigned int]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libvcflib.so.1 -o libvcflib.so.1 src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o filevercmp/filevercmp.o -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
ln -s libvcflib.so.1 libvcflib.so
cp -f -a libvcflib.so* lib
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Distance = int; _Tp = Interval<unsigned int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<unsigned int, double>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In constructor 'IntervalTree<Scalar, Value>::IntervalTree(IntervalTree<Scalar, Value>::interval_vector&&, std::size_t, std::size_t, std::size_t, Scalar, Scalar) [with Scalar = unsigned int; Value = double]':
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<unsigned int, double>*, std::vector<Interval<unsigned int, double>, std::allocator<Interval<unsigned int, double> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Distance = int; _Tp = Interval<double, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<IntervalTree<double, unsigned int>::IntervalStartCmp>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In constructor 'IntervalTree<Scalar, Value>::IntervalTree(IntervalTree<Scalar, Value>::interval_vector&&, std::size_t, std::size_t, std::size_t, Scalar, Scalar) [with Scalar = double; Value = unsigned int]':
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/bits/random.h:34,
from /usr/include/c++/9/random:49,
from interval_tree_test.cpp:4:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from IntervalTree.h:5,
from interval_tree_test.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Interval<double, unsigned int>*, std::vector<Interval<double, unsigned int>, std::allocator<Interval<double, unsigned int> > > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
make[3]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/intervaltree'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfecho.cpp -o bin/vcfecho -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfnormalizesvs.cpp -o bin/vcfnormalizesvs -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/dumpContigsFromHeader.cpp -o bin/dumpContigsFromHeader -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/bFst.cpp -o bin/bFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/pVst.cpp -o bin/pVst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/hapLrt.cpp -o bin/hapLrt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/popStats.cpp -o bin/popStats -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void phardy(std::vector<double>&, double, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, pop&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void calc(copyNcounts*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void loadDat(copyNcounts*, std::string&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/hapLrt.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/wcFst.cpp -o bin/wcFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/hapLrt.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/iHS.cpp -o bin/iHS -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/segmentFst.cpp -o bin/segmentFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/segmentIhs.cpp -o bin/segmentIhs -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/segmentFst.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/genotypeSummary.cpp -o bin/genotypeSummary -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/segmentIhs.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/sequenceDiversity.cpp -o bin/sequenceDiversity -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/pFst.cpp -o bin/pFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/sequenceDiversity.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/smoother.cpp -o bin/smoother -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/sequenceDiversity.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfld.cpp -o bin/vcfld -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/smoother.cpp:4:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/smoother.cpp:4:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/plotHaps.cpp -o bin/plotHaps -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/abba-baba.cpp -o bin/abba-baba -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/permuteGPAT++.cpp -o bin/permuteGPAT++ -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
src/abba-baba.cpp: In function 'int sample_het(int&)':
src/abba-baba.cpp:74:1: warning: no return statement in function returning non-void [-Wreturn-type]
74 | }
| ^
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfld.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/permuteGPAT++.cpp:39:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/permuteGPAT++.cpp:39:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/plotHaps.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/permuteSmooth.cpp -o bin/permuteSmooth -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfld.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/plotHaps.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/permuteSmooth.cpp:39:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/permuteSmooth.cpp:39:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool getContiguousWindow(std::vector<score*>&, std::vector<double>&, int, int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'bool permute(double, int, std::vector<score*>&, double*, double*, double*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/normalize-iHS.cpp -o bin/normalize-iHS -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/meltEHH.cpp -o bin/meltEHH -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfaltcount.cpp -o bin/vcfaltcount -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfhetcount.cpp -o bin/vcfhetcount -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/normalize-iHS.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/normalize-iHS.cpp:50:
/usr/include/c++/9/bits/stl_vector.h: In function 'void normalize(std::vector<iHSdat*>&, int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfhethomratio.cpp -o bin/vcfhethomratio -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcffilter.cpp -o bin/vcffilter -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcf2tsv.cpp -o bin/vcf2tsv -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenotypes.cpp -o bin/vcfgenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfannotategenotypes.cpp -o bin/vcfannotategenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcommonsamples.cpp -o bin/vcfcommonsamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfremovesamples.cpp -o bin/vcfremovesamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfkeepsamples.cpp -o bin/vcfkeepsamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsamplenames.cpp -o bin/vcfsamplenames -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&&>, std::tuple<>}; _Key = std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; _Val = std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >; _Compare = std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenotypecompare.cpp -o bin/vcfgenotypecompare -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcffixup.cpp -o bin/vcffixup -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfclassify.cpp -o bin/vcfclassify -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsamplediff.cpp -o bin/vcfsamplediff -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfremoveaberrantgenotypes.cpp -o bin/vcfremoveaberrantgenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfrandom.cpp -o bin/vcfrandom -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfparsealts.cpp -o bin/vcfparsealts -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfstats.cpp -o bin/vcfstats -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfflatten.cpp -o bin/vcfflatten -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfprimers.cpp -o bin/vcfprimers -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfnumalt.cpp -o bin/vcfnumalt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcleancomplex.cpp -o bin/vcfcleancomplex -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfintersect.cpp -o bin/vcfintersect -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfannotate.cpp -o bin/vcfannotate -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfallelicprimitives.cpp -o bin/vcfallelicprimitives -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfoverlay.cpp -o bin/vcfoverlay -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfoverlay.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfoverlay.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfallelicprimitives.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long unsigned int&&>, std::tuple<>}; _Key = long unsigned int; _Val = std::pair<const long unsigned int, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >; _Compare = std::less<long unsigned int>; _Alloc = std::allocator<std::pair<const long unsigned int, vcflib::Variant> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfaddinfo.cpp -o bin/vcfaddinfo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const vcflib::VariantAllele&>, std::tuple<>}; _Key = vcflib::VariantAllele; _Val = std::pair<const vcflib::VariantAllele, double>; _KeyOfValue = std::_Select1st<std::pair<const vcflib::VariantAllele, double> >; _Compare = std::less<vcflib::VariantAllele>; _Alloc = std::allocator<std::pair<const vcflib::VariantAllele, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfallelicprimitives.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfkeepinfo.cpp -o bin/vcfkeepinfo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfkeepgeno.cpp -o bin/vcfkeepgeno -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfafpath.cpp -o bin/vcfafpath -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcountalleles.cpp -o bin/vcfcountalleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfafpath.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfafpath.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcflength.cpp -o bin/vcflength -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfdistance.cpp -o bin/vcfdistance -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfrandomsample.cpp -o bin/vcfrandomsample -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfentropy.cpp -o bin/vcfentropy -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfglxgt.cpp -o bin/vcfglxgt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfroc.cpp -o bin/vcfroc -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcheck.cpp -o bin/vcfcheck -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfstreamsort.cpp -o bin/vcfstreamsort -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfroc.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long double&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long double&&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfuniq.cpp -o bin/vcfuniq -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfroc.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector<vcflib::VariantAllele*>; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfuniqalleles.cpp -o bin/vcfuniqalleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfstreamsort.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfremap.cpp -o bin/vcfremap -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfstreamsort.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcf2fasta.cpp -o bin/vcf2fasta -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsitesummarize.cpp -o bin/vcfsitesummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfbreakmulti.cpp -o bin/vcfbreakmulti -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcreatemulti.cpp -o bin/vcfcreatemulti -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfevenregions.cpp -o bin/vcfevenregions -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcat.cpp -o bin/vcfcat -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfbreakmulti.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfbreakmulti.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfcreatemulti.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenosummarize.cpp -o bin/vcfgenosummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfcreatemulti.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgenosamplenames.cpp -o bin/vcfgenosamplenames -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgeno2haplo.cpp -o bin/vcfgeno2haplo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfleftalign.cpp -o bin/vcfleftalign -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfcombine.cpp -o bin/vcfcombine -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfgeno2alleles.cpp -o bin/vcfgeno2alleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfleftalign.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'double entropy(const string&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfindex.cpp -o bin/vcfindex -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfgeno2haplo.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfgeno2haplo.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcf2dag.cpp -o bin/vcf2dag -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfsample2info.cpp -o bin/vcfsample2info -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfqual2info.cpp -o bin/vcfqual2info -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfinfo2qual.cpp -o bin/vcfinfo2qual -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/queue:62,
from src/Variant.h:14,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/smithwaterman/SmithWatermanGotoh.h:4,
from src/Variant.h:21,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'double median(std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:4794:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4794 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4795 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4796 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfglbound.cpp -o bin/vcfglbound -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfunphase.cpp -o bin/vcfunphase -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfnull2ref.cpp -o bin/vcfnull2ref -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
g++ -Wdate-time -D_FORTIFY_SOURCE=2 src/vcfinfosummarize.cpp -o bin/vcfinfosummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -lssw -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.1+dfsg-2+b1\" -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -lstdc++ -lm
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfglbound.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfglbound.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/queue:62,
from src/Variant.h:14,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/smithwaterman/SmithWatermanGotoh.h:4,
from src/Variant.h:21,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'double median(std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:4794:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4794 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4795 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4796 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
cp -f scripts/* bin
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
markdown README.md > README.html
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
export LD_LIBRARY_PATH=/<<BUILDDIR>>/libvcflib-1.0.1+dfsg/lib/:D_LIBRARY_PATH dh_auto_test
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_install
find debian -name filevercmp.h -delete
cp -a filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/
mkdir -p debian/libvcflib-dev/usr/include/intervaltree
mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree
# install pkg-config file
mkdir -p /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libvcflib.pc /<<BUILDDIR>>/libvcflib-1.0.1+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
rm -rf debian/*/usr/lib/vcflib/bin/*.R
for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
grep: debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/libvcflib.so: No such file or directory
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_fixperms
chmod -x debian/*/usr/lib/R/site-library/*/*.R
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.1+dfsg'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 was not linked against libdisorder.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/smoother contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pVst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/popStats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/bFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libvcflib1' in '../libvcflib1_1.0.1+dfsg-2+b1_armhf.deb'.
dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.1+dfsg-2+b1_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.1+dfsg-2+b1_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.1+dfsg-2+b1_armhf.deb'.
dpkg-deb: building package 'libvcflib1-dbgsym' in '../libvcflib1-dbgsym_1.0.1+dfsg-2+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../libvcflib_1.0.1+dfsg-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-01-19T11:02:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libvcflib_1.0.1+dfsg-2+b1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Thu, 26 Dec 2019 15:54:27 +0100
Source: libvcflib (1.0.1+dfsg-2)
Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.0.1+dfsg-2+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
libvcflib-dev - C++ library for parsing and manipulating VCF files (development)
libvcflib-tools - C++ library for parsing and manipulating VCF files (tools)
libvcflib1 - C++ library for parsing and manipulating VCF files
Changes:
libvcflib (1.0.1+dfsg-2+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
a88dfac496557416302f3b45457c52349134947c 28880 libvcflib-dev_1.0.1+dfsg-2+b1_armhf.deb
283fb841b6aa6406f5b151d7edadd5b87cbc15f4 13881144 libvcflib-tools-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
de9015c0990b7cac4d3b180ed2e0f9d747d5d3d1 512372 libvcflib-tools_1.0.1+dfsg-2+b1_armhf.deb
ea938e368df86811d39a80cf5521b299d3d310d7 1417096 libvcflib1-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
115e0fda7303d1066478a56fb5db789aa77d47b4 127180 libvcflib1_1.0.1+dfsg-2+b1_armhf.deb
b854019b8aeea22877335082d142210e436cc2aa 7204 libvcflib_1.0.1+dfsg-2+b1_armhf.buildinfo
Checksums-Sha256:
73e447042ddc4c04b9b4058c767fb907867d7a168c64145e42c693818b5ea929 28880 libvcflib-dev_1.0.1+dfsg-2+b1_armhf.deb
c18e79d1c322c8603186e70d1d15d2553a598c0f34f123a6085a3e1cf3d8a808 13881144 libvcflib-tools-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
65349f212b3bae30fd90788029ee18edf0a2c1f753f7d8d5a71fe2d1d90da1a2 512372 libvcflib-tools_1.0.1+dfsg-2+b1_armhf.deb
edd913833d688801c77cdb1dc24a304c9bd32b8f60e0d747e88b6d5289d53d46 1417096 libvcflib1-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
969d8a25f108b58f4ef8ebb4427b229b7a6a8732d55f3fa3cc23038db7a82c28 127180 libvcflib1_1.0.1+dfsg-2+b1_armhf.deb
0654efe783232c2584536bc5b904ed1baecfebdfad704ec6532e1e80fa2f5ee3 7204 libvcflib_1.0.1+dfsg-2+b1_armhf.buildinfo
Files:
6a8e84626caac8ca5ab73779ed2c4ece 28880 libdevel optional libvcflib-dev_1.0.1+dfsg-2+b1_armhf.deb
252f7c734b418e82f5592069eee7d79e 13881144 debug optional libvcflib-tools-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
7fe6defefe818494973ca780c7fb37db 512372 science optional libvcflib-tools_1.0.1+dfsg-2+b1_armhf.deb
7073f391acf184c80bdbebc1687b57b7 1417096 debug optional libvcflib1-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
92078e317e82a0a78d95b732768fff27 127180 libs optional libvcflib1_1.0.1+dfsg-2+b1_armhf.deb
6933651b3caa59cf88e4b2b1413330ea 7204 science optional libvcflib_1.0.1+dfsg-2+b1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libvcflib-dev_1.0.1+dfsg-2+b1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 28880 bytes: control archive=1512 bytes.
1289 bytes, 27 lines control
1188 bytes, 17 lines md5sums
Package: libvcflib-dev
Source: libvcflib (1.0.1+dfsg-2)
Version: 1.0.1+dfsg-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 171
Depends: libvcflib1 (= 1.0.1+dfsg-2+b1), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files (development)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/include/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/include/intervaltree/
-rw-r--r-- root/root 11699 2019-12-26 14:54 ./usr/include/intervaltree/IntervalTree.h
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/include/vcflib/
-rw-r--r-- root/root 5601 2019-12-26 14:54 ./usr/include/vcflib/BedReader.h
-rw-r--r-- root/root 22615 2019-12-26 14:54 ./usr/include/vcflib/Variant.h
-rw-r--r-- root/root 470 2019-12-26 14:54 ./usr/include/vcflib/convert.h
-rw-r--r-- root/root 1777 2019-10-01 07:06 ./usr/include/vcflib/filevercmp.h
-rw-r--r-- root/root 1011 2019-12-26 14:54 ./usr/include/vcflib/join.h
-rw-r--r-- root/root 6353 2019-12-26 14:54 ./usr/include/vcflib/mt19937ar.h
-rw-r--r-- root/root 2155 2019-12-26 14:54 ./usr/include/vcflib/multichoose.h
-rw-r--r-- root/root 3446 2019-12-26 14:54 ./usr/include/vcflib/multipermute.h
-rw-r--r-- root/root 1598 2019-12-26 14:54 ./usr/include/vcflib/split.h
-rw-r--r-- root/root 75369 2019-12-26 14:54 ./usr/include/vcflib/vec128int.h
-rw-r--r-- root/root 13921 2019-12-26 14:54 ./usr/include/vcflib/veclib_types.h
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/libvcflib.so -> libvcflib.so.1
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 283 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libvcflib.pc
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib-dev/
-rw-r--r-- root/root 227 2019-12-26 14:54 ./usr/share/doc/libvcflib-dev/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1535 2019-12-26 14:54 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz
-rw-r--r-- root/root 2042 2019-12-10 11:44 ./usr/share/doc/libvcflib-dev/copyright
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 91 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib-dev
libvcflib-tools-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
------------------------------------------------
new Debian package, version 2.0.
size 13881144 bytes: control archive=4412 bytes.
3914 bytes, 12 lines control
9211 bytes, 87 lines md5sums
Package: libvcflib-tools-dbgsym
Source: libvcflib (1.0.1+dfsg-2)
Version: 1.0.1+dfsg-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 14952
Depends: libvcflib-tools (= 1.0.1+dfsg-2+b1)
Section: debug
Priority: optional
Description: debug symbols for libvcflib-tools
Build-Ids: 031773e80adca0df48ab3f41f75e3a0b584a7d71 0455bc01800c2aab820a907f6d4ba055664a4b55 06db85cf7b75ad3dfc8a7b12f3958464eb13663a 077d38a7e252c2edce69deac757ff1558a33c4c6 08abf7a37b7266c6213f66266093299dfa6f7031 0928a9d5d61a966dd6c7c632fac6570efded3be6 12a15055c1d39945e715488b30a8f8b62cd978fe 12b2f574baca47992e692db4c8039a2af8ba2892 12ed3e34c17a6fc5907765ed715b1128c74b13a4 144b6f9c46ce2d3cb1282db4b9747efb6e13fd31 15d0d0b3c41e18f33e2b6b5496a75b308e3b670a 1995604a252ebc717ad4ebc29047d5979af2ef40 1cd1b13c31f9e74e8e9839540e716eddc8fb1dd0 1e9919f0ff73be53395dea3fd01e492e1db8c416 208680b473a0126af89285148e73b9b4c51036e9 21a39237eb9bcc517b0f5b77a5cf8a4a836e9869 24a7d732156a34b53119beffd012503e4146534c 2533cfce9ff346d366d87c246a7df95305133e4e 292bb14ce6f8b677bc8be7f26031da2f8f378094 3a95aaf92b0651052d36e8aa0381915fc7e80f18 3d3316f14bdc94573a4e69a3b9ca50124896b3f3 3e354df2279b4dac219fb6a75be1b84a8e3e4100 49147ce727b7db48e193d03e357bc0c99bff09dd 495ed1b896c0238b668b20da4085708e51f36209 4a31eba82a26ad93307db69c09bada77859d0c2a 4d60371651b766a8d88f773e2ea8e72f2c396e8c 4eddfbead7a49dbf511fdc51a1aef03e893d3f72 4f893253325afba97f083568572b84456c62e114 503ba74eec71554af4971215c1a94c006f049f44 557a454ad55561e7f8afde23eccede012c9033f2 56ef2525ecbaee10ada3704d22723661b5af851f 56ef6c99b34c0914ba55585eba950253ee07aa28 5b453175e4c1d23128d48c0e9db0761c2078d450 5d4fe7b24bd6dff1da1d7e4e2a4b93d8b2cce280 5d6d509f1e9deea6ac5f8d15f9e6d23eb01fa50f 5f073d6f340381af6bfce60a0040ef2892af3b93 6176a869bdafde0730f1750244c556e41966b50b 621e3151444c8867601eaa7b2c01e2126725a4df 6363ca5dd074254183f14a2a4e2c71f80ada9af6 6c1a961dac651d4f8c2b56708fa6641a2f496a56 75f369f2c4ea3b781319a51fdc5c43943c496845 7ecb20c07f964d51a32f4c036f3d6ed91de244ae 80854c406f9541b7a9211bb4ded9932d52cb0245 818f09326ad6dfb40079c518802203de3a4c7bef 81dbd8cd7208798a8eb11d2f4f1a639e3ee323bc 84128c0dcbefcdb188c82200ff257c7b1dcfd082 856cbe1c6d6e2dbc2256d07fdac80c2e195440c6 87cc0a1980bac36933ebc49cab51ea9bed2ee110 8ae865b712efdfbbfc861e355ca0d3064f2cc62e 8ec2441e48b4f2ceed54924526c74244d3fe60aa 8f8c95e893e049da599be594bf059b5bb98f24c0 8fae7a1c1a11bd2e1d29c1e491844eb8500d0520 90d5a4805c0866396ace3d384f2fcacbb090238e 919f9dd9550f7f0c0190caf9d607cef23184783e 91c43f98f560e0ed35685dfda98e0dd5ed730b65 91d4fd88d6baa82b8e3cc5163b5cc66aa24f74d5 931a1261f79a771d84c4f2aa4dcaa40b822850f4 9a18df9ec7ff6eacee24c36da68ba1ec50b91150 9cd11d5fa901787faaba4f23d38b0ef106ad9959 9ce5df24a3f9332e292867ccb9efa8e351f9a941 a1a20aa6592c1d1f830e9e81ba83938a29803781 a704eca3ea50eebfc05872c920472c9fdfb1c978 a998b810ed9b0286e7ede1561328754392fe6bf0 ac00b25cc9cc6f9e7ee6337895631abfa2b2365f ad752e9c008aee1dcbd1aca2f2897d33ca1d227e b2c49517d851ecfe62b4965fc3510dbe5bb2b4f3 bb395046b6e408ed4a4d52675e09b978650d26af bf617b2533281013c776927e834407b28ac88980 c01f793a80f3421113a2caa7b79998d266a032e4 c27a4bc71e5af901c1a62d5ef003c60dc41de53b d2f3b358a4d5d72c293fc382be8ec55a3bf8deda d480b448718f6daa42b17b22b8aa172592030c8c d684c6a87cbb44072567e34c860238506cd3d27d d7d7dbde58e4cc43e8c1f72871d8247122922efe d7ee6911c031065119321fc31bb6bbc64739721f d93fe79b6cb60a38ee69017c557e4982787043eb daad3c60c549fc34688a500736d6d955cbc7707f dd8d4a8dab83df86150b7b24bb8162cb10b7adc4 e665d2859a74d76f938d404f978bd2debe670165 ebc7332d0ea789fb456f960eff494bc39c4c73ca ebd132b32eb04b555cc2227a2e0e92096d7bcc48 ef04e639a8c0b6b1c16d7010d6fe894b6eda7579 f0f3f4aada1f7720835277519e424caef9be608f f67ffac5f36ec77ba28656646df95397a0e02bdd fbea8a685cb8c000768f9f783f5035f413009afe fcfa8ac08ed86ab2c9cef17a82faef3dc89582af
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/03/
-rw-r--r-- root/root 98564 2019-12-26 14:54 ./usr/lib/debug/.build-id/03/1773e80adca0df48ab3f41f75e3a0b584a7d71.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/04/
-rw-r--r-- root/root 121044 2019-12-26 14:54 ./usr/lib/debug/.build-id/04/55bc01800c2aab820a907f6d4ba055664a4b55.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 111720 2019-12-26 14:54 ./usr/lib/debug/.build-id/06/db85cf7b75ad3dfc8a7b12f3958464eb13663a.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/07/
-rw-r--r-- root/root 206296 2019-12-26 14:54 ./usr/lib/debug/.build-id/07/7d38a7e252c2edce69deac757ff1558a33c4c6.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/08/
-rw-r--r-- root/root 619720 2019-12-26 14:54 ./usr/lib/debug/.build-id/08/abf7a37b7266c6213f66266093299dfa6f7031.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/09/
-rw-r--r-- root/root 99972 2019-12-26 14:54 ./usr/lib/debug/.build-id/09/28a9d5d61a966dd6c7c632fac6570efded3be6.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root 84528 2019-12-26 14:54 ./usr/lib/debug/.build-id/12/a15055c1d39945e715488b30a8f8b62cd978fe.debug
-rw-r--r-- root/root 104036 2019-12-26 14:54 ./usr/lib/debug/.build-id/12/b2f574baca47992e692db4c8039a2af8ba2892.debug
-rw-r--r-- root/root 191236 2019-12-26 14:54 ./usr/lib/debug/.build-id/12/ed3e34c17a6fc5907765ed715b1128c74b13a4.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/14/
-rw-r--r-- root/root 288168 2019-12-26 14:54 ./usr/lib/debug/.build-id/14/4b6f9c46ce2d3cb1282db4b9747efb6e13fd31.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/15/
-rw-r--r-- root/root 71084 2019-12-26 14:54 ./usr/lib/debug/.build-id/15/d0d0b3c41e18f33e2b6b5496a75b308e3b670a.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root 80056 2019-12-26 14:54 ./usr/lib/debug/.build-id/19/95604a252ebc717ad4ebc29047d5979af2ef40.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/1c/
-rw-r--r-- root/root 136028 2019-12-26 14:54 ./usr/lib/debug/.build-id/1c/d1b13c31f9e74e8e9839540e716eddc8fb1dd0.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/1e/
-rw-r--r-- root/root 233408 2019-12-26 14:54 ./usr/lib/debug/.build-id/1e/9919f0ff73be53395dea3fd01e492e1db8c416.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/20/
-rw-r--r-- root/root 46256 2019-12-26 14:54 ./usr/lib/debug/.build-id/20/8680b473a0126af89285148e73b9b4c51036e9.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/21/
-rw-r--r-- root/root 303600 2019-12-26 14:54 ./usr/lib/debug/.build-id/21/a39237eb9bcc517b0f5b77a5cf8a4a836e9869.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/24/
-rw-r--r-- root/root 127232 2019-12-26 14:54 ./usr/lib/debug/.build-id/24/a7d732156a34b53119beffd012503e4146534c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/25/
-rw-r--r-- root/root 498620 2019-12-26 14:54 ./usr/lib/debug/.build-id/25/33cfce9ff346d366d87c246a7df95305133e4e.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/29/
-rw-r--r-- root/root 270828 2019-12-26 14:54 ./usr/lib/debug/.build-id/29/2bb14ce6f8b677bc8be7f26031da2f8f378094.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/3a/
-rw-r--r-- root/root 76360 2019-12-26 14:54 ./usr/lib/debug/.build-id/3a/95aaf92b0651052d36e8aa0381915fc7e80f18.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/3d/
-rw-r--r-- root/root 135928 2019-12-26 14:54 ./usr/lib/debug/.build-id/3d/3316f14bdc94573a4e69a3b9ca50124896b3f3.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/3e/
-rw-r--r-- root/root 216820 2019-12-26 14:54 ./usr/lib/debug/.build-id/3e/354df2279b4dac219fb6a75be1b84a8e3e4100.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/49/
-rw-r--r-- root/root 57992 2019-12-26 14:54 ./usr/lib/debug/.build-id/49/147ce727b7db48e193d03e357bc0c99bff09dd.debug
-rw-r--r-- root/root 343404 2019-12-26 14:54 ./usr/lib/debug/.build-id/49/5ed1b896c0238b668b20da4085708e51f36209.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/4a/
-rw-r--r-- root/root 85928 2019-12-26 14:54 ./usr/lib/debug/.build-id/4a/31eba82a26ad93307db69c09bada77859d0c2a.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/4d/
-rw-r--r-- root/root 230432 2019-12-26 14:54 ./usr/lib/debug/.build-id/4d/60371651b766a8d88f773e2ea8e72f2c396e8c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/4e/
-rw-r--r-- root/root 88432 2019-12-26 14:54 ./usr/lib/debug/.build-id/4e/ddfbead7a49dbf511fdc51a1aef03e893d3f72.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root 452664 2019-12-26 14:54 ./usr/lib/debug/.build-id/4f/893253325afba97f083568572b84456c62e114.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root 241052 2019-12-26 14:54 ./usr/lib/debug/.build-id/50/3ba74eec71554af4971215c1a94c006f049f44.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/55/
-rw-r--r-- root/root 563996 2019-12-26 14:54 ./usr/lib/debug/.build-id/55/7a454ad55561e7f8afde23eccede012c9033f2.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/56/
-rw-r--r-- root/root 186132 2019-12-26 14:54 ./usr/lib/debug/.build-id/56/ef2525ecbaee10ada3704d22723661b5af851f.debug
-rw-r--r-- root/root 87308 2019-12-26 14:54 ./usr/lib/debug/.build-id/56/ef6c99b34c0914ba55585eba950253ee07aa28.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/5b/
-rw-r--r-- root/root 132728 2019-12-26 14:54 ./usr/lib/debug/.build-id/5b/453175e4c1d23128d48c0e9db0761c2078d450.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/5d/
-rw-r--r-- root/root 112860 2019-12-26 14:54 ./usr/lib/debug/.build-id/5d/4fe7b24bd6dff1da1d7e4e2a4b93d8b2cce280.debug
-rw-r--r-- root/root 223692 2019-12-26 14:54 ./usr/lib/debug/.build-id/5d/6d509f1e9deea6ac5f8d15f9e6d23eb01fa50f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/5f/
-rw-r--r-- root/root 32928 2019-12-26 14:54 ./usr/lib/debug/.build-id/5f/073d6f340381af6bfce60a0040ef2892af3b93.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/61/
-rw-r--r-- root/root 162804 2019-12-26 14:54 ./usr/lib/debug/.build-id/61/76a869bdafde0730f1750244c556e41966b50b.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/62/
-rw-r--r-- root/root 308224 2019-12-26 14:54 ./usr/lib/debug/.build-id/62/1e3151444c8867601eaa7b2c01e2126725a4df.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/63/
-rw-r--r-- root/root 562616 2019-12-26 14:54 ./usr/lib/debug/.build-id/63/63ca5dd074254183f14a2a4e2c71f80ada9af6.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/6c/
-rw-r--r-- root/root 239376 2019-12-26 14:54 ./usr/lib/debug/.build-id/6c/1a961dac651d4f8c2b56708fa6641a2f496a56.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/75/
-rw-r--r-- root/root 205288 2019-12-26 14:54 ./usr/lib/debug/.build-id/75/f369f2c4ea3b781319a51fdc5c43943c496845.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/7e/
-rw-r--r-- root/root 206564 2019-12-26 14:54 ./usr/lib/debug/.build-id/7e/cb20c07f964d51a32f4c036f3d6ed91de244ae.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/80/
-rw-r--r-- root/root 94500 2019-12-26 14:54 ./usr/lib/debug/.build-id/80/854c406f9541b7a9211bb4ded9932d52cb0245.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/81/
-rw-r--r-- root/root 179316 2019-12-26 14:54 ./usr/lib/debug/.build-id/81/8f09326ad6dfb40079c518802203de3a4c7bef.debug
-rw-r--r-- root/root 106516 2019-12-26 14:54 ./usr/lib/debug/.build-id/81/dbd8cd7208798a8eb11d2f4f1a639e3ee323bc.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/84/
-rw-r--r-- root/root 464716 2019-12-26 14:54 ./usr/lib/debug/.build-id/84/128c0dcbefcdb188c82200ff257c7b1dcfd082.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/85/
-rw-r--r-- root/root 35924 2019-12-26 14:54 ./usr/lib/debug/.build-id/85/6cbe1c6d6e2dbc2256d07fdac80c2e195440c6.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/87/
-rw-r--r-- root/root 146068 2019-12-26 14:54 ./usr/lib/debug/.build-id/87/cc0a1980bac36933ebc49cab51ea9bed2ee110.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/8a/
-rw-r--r-- root/root 217824 2019-12-26 14:54 ./usr/lib/debug/.build-id/8a/e865b712efdfbbfc861e355ca0d3064f2cc62e.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/8e/
-rw-r--r-- root/root 301728 2019-12-26 14:54 ./usr/lib/debug/.build-id/8e/c2441e48b4f2ceed54924526c74244d3fe60aa.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/8f/
-rw-r--r-- root/root 227916 2019-12-26 14:54 ./usr/lib/debug/.build-id/8f/8c95e893e049da599be594bf059b5bb98f24c0.debug
-rw-r--r-- root/root 58844 2019-12-26 14:54 ./usr/lib/debug/.build-id/8f/ae7a1c1a11bd2e1d29c1e491844eb8500d0520.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/90/
-rw-r--r-- root/root 145468 2019-12-26 14:54 ./usr/lib/debug/.build-id/90/d5a4805c0866396ace3d384f2fcacbb090238e.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/91/
-rw-r--r-- root/root 95948 2019-12-26 14:54 ./usr/lib/debug/.build-id/91/9f9dd9550f7f0c0190caf9d607cef23184783e.debug
-rw-r--r-- root/root 113808 2019-12-26 14:54 ./usr/lib/debug/.build-id/91/c43f98f560e0ed35685dfda98e0dd5ed730b65.debug
-rw-r--r-- root/root 131392 2019-12-26 14:54 ./usr/lib/debug/.build-id/91/d4fd88d6baa82b8e3cc5163b5cc66aa24f74d5.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/93/
-rw-r--r-- root/root 116480 2019-12-26 14:54 ./usr/lib/debug/.build-id/93/1a1261f79a771d84c4f2aa4dcaa40b822850f4.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/9a/
-rw-r--r-- root/root 80200 2019-12-26 14:54 ./usr/lib/debug/.build-id/9a/18df9ec7ff6eacee24c36da68ba1ec50b91150.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/9c/
-rw-r--r-- root/root 71208 2019-12-26 14:54 ./usr/lib/debug/.build-id/9c/d11d5fa901787faaba4f23d38b0ef106ad9959.debug
-rw-r--r-- root/root 97160 2019-12-26 14:54 ./usr/lib/debug/.build-id/9c/e5df24a3f9332e292867ccb9efa8e351f9a941.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a1/
-rw-r--r-- root/root 252196 2019-12-26 14:54 ./usr/lib/debug/.build-id/a1/a20aa6592c1d1f830e9e81ba83938a29803781.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a7/
-rw-r--r-- root/root 140068 2019-12-26 14:54 ./usr/lib/debug/.build-id/a7/04eca3ea50eebfc05872c920472c9fdfb1c978.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/a9/
-rw-r--r-- root/root 118656 2019-12-26 14:54 ./usr/lib/debug/.build-id/a9/98b810ed9b0286e7ede1561328754392fe6bf0.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 93888 2019-12-26 14:54 ./usr/lib/debug/.build-id/ac/00b25cc9cc6f9e7ee6337895631abfa2b2365f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ad/
-rw-r--r-- root/root 69068 2019-12-26 14:54 ./usr/lib/debug/.build-id/ad/752e9c008aee1dcbd1aca2f2897d33ca1d227e.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/b2/
-rw-r--r-- root/root 39464 2019-12-26 14:54 ./usr/lib/debug/.build-id/b2/c49517d851ecfe62b4965fc3510dbe5bb2b4f3.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/bb/
-rw-r--r-- root/root 97412 2019-12-26 14:54 ./usr/lib/debug/.build-id/bb/395046b6e408ed4a4d52675e09b978650d26af.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/bf/
-rw-r--r-- root/root 279740 2019-12-26 14:54 ./usr/lib/debug/.build-id/bf/617b2533281013c776927e834407b28ac88980.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/c0/
-rw-r--r-- root/root 85168 2019-12-26 14:54 ./usr/lib/debug/.build-id/c0/1f793a80f3421113a2caa7b79998d266a032e4.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/c2/
-rw-r--r-- root/root 104592 2019-12-26 14:54 ./usr/lib/debug/.build-id/c2/7a4bc71e5af901c1a62d5ef003c60dc41de53b.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/d2/
-rw-r--r-- root/root 153836 2019-12-26 14:54 ./usr/lib/debug/.build-id/d2/f3b358a4d5d72c293fc382be8ec55a3bf8deda.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/d4/
-rw-r--r-- root/root 161256 2019-12-26 14:54 ./usr/lib/debug/.build-id/d4/80b448718f6daa42b17b22b8aa172592030c8c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/d6/
-rw-r--r-- root/root 46292 2019-12-26 14:54 ./usr/lib/debug/.build-id/d6/84c6a87cbb44072567e34c860238506cd3d27d.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/d7/
-rw-r--r-- root/root 153976 2019-12-26 14:54 ./usr/lib/debug/.build-id/d7/d7dbde58e4cc43e8c1f72871d8247122922efe.debug
-rw-r--r-- root/root 154144 2019-12-26 14:54 ./usr/lib/debug/.build-id/d7/ee6911c031065119321fc31bb6bbc64739721f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/d9/
-rw-r--r-- root/root 86168 2019-12-26 14:54 ./usr/lib/debug/.build-id/d9/3fe79b6cb60a38ee69017c557e4982787043eb.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/da/
-rw-r--r-- root/root 109572 2019-12-26 14:54 ./usr/lib/debug/.build-id/da/ad3c60c549fc34688a500736d6d955cbc7707f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/dd/
-rw-r--r-- root/root 81780 2019-12-26 14:54 ./usr/lib/debug/.build-id/dd/8d4a8dab83df86150b7b24bb8162cb10b7adc4.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/e6/
-rw-r--r-- root/root 124876 2019-12-26 14:54 ./usr/lib/debug/.build-id/e6/65d2859a74d76f938d404f978bd2debe670165.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root 149620 2019-12-26 14:54 ./usr/lib/debug/.build-id/eb/c7332d0ea789fb456f960eff494bc39c4c73ca.debug
-rw-r--r-- root/root 57588 2019-12-26 14:54 ./usr/lib/debug/.build-id/eb/d132b32eb04b555cc2227a2e0e92096d7bcc48.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/ef/
-rw-r--r-- root/root 101476 2019-12-26 14:54 ./usr/lib/debug/.build-id/ef/04e639a8c0b6b1c16d7010d6fe894b6eda7579.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/f0/
-rw-r--r-- root/root 138924 2019-12-26 14:54 ./usr/lib/debug/.build-id/f0/f3f4aada1f7720835277519e424caef9be608f.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/f6/
-rw-r--r-- root/root 73536 2019-12-26 14:54 ./usr/lib/debug/.build-id/f6/7ffac5f36ec77ba28656646df95397a0e02bdd.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/fb/
-rw-r--r-- root/root 114008 2019-12-26 14:54 ./usr/lib/debug/.build-id/fb/ea8a685cb8c000768f9f783f5035f413009afe.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root 117488 2019-12-26 14:54 ./usr/lib/debug/.build-id/fc/fa8ac08ed86ab2c9cef17a82faef3dc89582af.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 740592 2019-12-26 14:54 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/libvcflib-tools.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib-tools-dbgsym -> libvcflib-tools
libvcflib-tools_1.0.1+dfsg-2+b1_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 512372 bytes: control archive=4640 bytes.
1541 bytes, 29 lines control
9310 bytes, 139 lines md5sums
Package: libvcflib-tools
Source: libvcflib (1.0.1+dfsg-2)
Version: 1.0.1+dfsg-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3138
Depends: libc6 (>= 2.15), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc1 (>= 1:3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.1+dfsg), perl:any, python3, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase
Suggests: r-cran-pracma
Breaks: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Replaces: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Section: science
Priority: optional
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains several tools using the library.
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/bin/
-rwxr-xr-x root/root 34520 2019-12-26 14:54 ./usr/bin/vcf2tsv
-rwxr-xr-x root/root 46952 2019-12-26 14:54 ./usr/bin/vcffilter
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/bin/vcfkeepinfo
-rwxr-xr-x root/root 404 2019-12-10 11:34 ./usr/bin/vcflib
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/bin/vcfstreamsort -> ../lib/vcflib/bin/vcfstreamsort
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/bin/vcfuniq -> ../lib/vcflib/bin/vcfuniq
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/R/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/
-rw-r--r-- root/root 519 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotBfst.R
-rw-r--r-- root/root 566 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotHapLrt.R
-rw-r--r-- root/root 646 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotHaplotypes.R
-rw-r--r-- root/root 511 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotPfst.R
-rw-r--r-- root/root 1314 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotSmoothed.R
-rw-r--r-- root/root 483 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotWCfst.R
-rw-r--r-- root/root 474 2019-12-26 14:54 ./usr/lib/R/site-library/vcflib/plotXPEHH.R
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/vcflib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/vcflib/bin/
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/abba-baba
-rwxr-xr-x root/root 46744 2019-12-26 14:54 ./usr/lib/vcflib/bin/bFst
-rwxr-xr-x root/root 171 2019-12-26 14:54 ./usr/lib/vcflib/bin/bed2region
-rwxr-xr-x root/root 234 2019-12-26 14:54 ./usr/lib/vcflib/bin/bgziptabix
-rwxr-xr-x root/root 13976 2019-12-26 14:54 ./usr/lib/vcflib/bin/dumpContigsFromHeader
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/genotypeSummary
-rwxr-xr-x root/root 46744 2019-12-26 14:54 ./usr/lib/vcflib/bin/hapLrt
-rwxr-xr-x root/root 54936 2019-12-26 14:54 ./usr/lib/vcflib/bin/iHS
-rwxr-xr-x root/root 50840 2019-12-26 14:54 ./usr/lib/vcflib/bin/meltEHH
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/normalize-iHS
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/pFst
-rwxr-xr-x root/root 50844 2019-12-26 14:54 ./usr/lib/vcflib/bin/pVst
-rwxr-xr-x root/root 13976 2019-12-26 14:54 ./usr/lib/vcflib/bin/permuteGPAT++
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/permuteSmooth
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/plotHaps
-rwxr-xr-x root/root 6005 2019-12-26 14:54 ./usr/lib/vcflib/bin/plot_roc.r
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/popStats
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/segmentFst
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/segmentIhs
-rwxr-xr-x root/root 50840 2019-12-26 14:54 ./usr/lib/vcflib/bin/sequenceDiversity
-rwxr-xr-x root/root 30488 2019-12-26 14:54 ./usr/lib/vcflib/bin/smoother
-rwxr-xr-x root/root 437 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2bed.py
-rwxr-xr-x root/root 34504 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2dag
-rwxr-xr-x root/root 46840 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2fasta
-rwxr-xr-x root/root 3626 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2sqlite.py
-rwxr-xr-x root/root 34520 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf2tsv
-rwxr-xr-x root/root 260 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcf_strip_extra_headers
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfaddinfo
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfafpath
-rwxr-xr-x root/root 87816 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfallelicprimitives
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfaltcount
-rwxr-xr-x root/root 75496 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfannotate
-rwxr-xr-x root/root 75416 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfannotategenotypes
-rwxr-xr-x root/root 371 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfbiallelic
-rwxr-xr-x root/root 34488 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfbreakmulti
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcat
-rwxr-xr-x root/root 22264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcheck
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfclassify
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcleancomplex
-rwxr-xr-x root/root 225 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfclearid
-rwxr-xr-x root/root 225 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfclearinfo
-rwxr-xr-x root/root 50904 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcombine
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcommonsamples
-rwxr-xr-x root/root 522 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcomplex
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcountalleles
-rwxr-xr-x root/root 46776 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfcreatemulti
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfdistance
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfecho
-rwxr-xr-x root/root 34520 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfentropy
-rwxr-xr-x root/root 22296 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfevenregions
-rwxr-xr-x root/root 46952 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcffilter
-rwxr-xr-x root/root 315 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcffirstheader
-rwxr-xr-x root/root 30360 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcffixup
-rwxr-xr-x root/root 38552 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfflatten
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgeno2alleles
-rwxr-xr-x root/root 75512 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgeno2haplo
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenosamplenames
-rwxr-xr-x root/root 34456 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenosummarize
-rwxr-xr-x root/root 59032 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenotypecompare
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgenotypes
-rwxr-xr-x root/root 26328 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfglbound
-rwxr-xr-x root/root 30408 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfglxgt
-rwxr-xr-x root/root 334 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfgtcompare.sh
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfhetcount
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfhethomratio
-rwxr-xr-x root/root 1759 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfindelproximity
-rwxr-xr-x root/root 502 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfindels
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfindex
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfinfo2qual
-rwxr-xr-x root/root 34600 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfinfosummarize
-rwxr-xr-x root/root 83896 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfintersect
-rwxr-xr-x root/root 1157 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfjoincalls
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfkeepgeno
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfkeepinfo
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfkeepsamples
-rwxr-xr-x root/root 50840 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfld
-rwxr-xr-x root/root 55000 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfleftalign
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcflength
-rwxr-xr-x root/root 374 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfmultiallelic
-rwxr-xr-x root/root 444 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfmultiway
-rwxr-xr-x root/root 777 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfmultiwayscripts
-rwxr-xr-x root/root 623 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnobiallelicsnps
-rwxr-xr-x root/root 426 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnoindels
-rwxr-xr-x root/root 22248 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnormalizesvs
-rwxr-xr-x root/root 518 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnosnps
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnull2ref
-rwxr-xr-x root/root 638 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnulldotslashdot
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfnumalt
-rwxr-xr-x root/root 30408 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfoverlay
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfparsealts
-rwxr-xr-x root/root 22065 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r
-rwxr-xr-x root/root 179 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh
-rwxr-xr-x root/root 3946 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplotsitediscrepancy.r
-rwxr-xr-x root/root 171 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfplottstv.sh
-rwxr-xr-x root/root 22232 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfprimers
-rwxr-xr-x root/root 1845 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r
-rwxr-xr-x root/root 518 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfqual2info
-rwxr-xr-x root/root 686 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfqualfilter
-rwxr-xr-x root/root 30360 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfrandom
-rwxr-xr-x root/root 34556 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfrandomsample
-rwxr-xr-x root/root 843 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce
-rwxr-xr-x root/root 989 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce_and_cut
-rwxr-xr-x root/root 782 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce_pipe
-rwxr-xr-x root/root 835 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfregionreduce_uncompressed
-rwxr-xr-x root/root 42840 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremap
-rwxr-xr-x root/root 26264 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremoveaberrantgenotypes
-rwxr-xr-x root/root 556 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremovenonATGC
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfremovesamples
-rwxr-xr-x root/root 79608 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfroc
-rwxr-xr-x root/root 30488 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsample2info
-rwxr-xr-x root/root 38600 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsamplediff
-rwxr-xr-x root/root 13976 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsamplenames
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsitesummarize
-rwxr-xr-x root/root 521 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsnps
-rwxr-xr-x root/root 83 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfsort
-rwxr-xr-x root/root 59192 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfstats
-rwxr-xr-x root/root 46808 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfstreamsort
-rwxr-xr-x root/root 18072 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfuniq
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfuniqalleles
-rwxr-xr-x root/root 22168 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfunphase
-rwxr-xr-x root/root 5459 2019-12-26 14:54 ./usr/lib/vcflib/bin/vcfvarstats
-rwxr-xr-x root/root 42648 2019-12-26 14:54 ./usr/lib/vcflib/bin/wcFst
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib-tools/
-rw-r--r-- root/root 227 2019-12-26 14:54 ./usr/share/doc/libvcflib-tools/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1535 2019-12-26 14:54 ./usr/share/doc/libvcflib-tools/changelog.Debian.gz
-rw-r--r-- root/root 2042 2019-12-10 11:44 ./usr/share/doc/libvcflib-tools/copyright
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 93 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib-tools
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/man/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/man/man1/
-rw-r--r-- root/root 505 2019-12-26 14:54 ./usr/share/man/man1/vcflib.1.gz
libvcflib1-dbgsym_1.0.1+dfsg-2+b1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 1417096 bytes: control archive=564 bytes.
430 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libvcflib1-dbgsym
Source: libvcflib (1.0.1+dfsg-2)
Version: 1.0.1+dfsg-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1473
Depends: libvcflib1 (= 1.0.1+dfsg-2+b1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libvcflib1
Build-Ids: f42ab6bb1514636c205a39cbfef9230cf4c0d31c
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/debug/.build-id/f4/
-rw-r--r-- root/root 1497596 2019-12-26 14:54 ./usr/lib/debug/.build-id/f4/2ab6bb1514636c205a39cbfef9230cf4c0d31c.debug
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib1-dbgsym -> libvcflib1
libvcflib1_1.0.1+dfsg-2+b1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 127180 bytes: control archive=1252 bytes.
1268 bytes, 25 lines control
383 bytes, 5 lines md5sums
39 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libvcflib1
Source: libvcflib (1.0.1+dfsg-2)
Version: 1.0.1+dfsg-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 341
Depends: libc6 (>= 2.15), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc1 (>= 1:3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/vcflib/vcflib
Description: C++ library for parsing and manipulating VCF files
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
drwxr-xr-x root/root 0 2019-12-26 14:54 ./
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 329924 2019-12-26 14:54 ./usr/lib/arm-linux-gnueabihf/libvcflib.so.1
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/doc/libvcflib1/
-rw-r--r-- root/root 227 2019-12-26 14:54 ./usr/share/doc/libvcflib1/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1535 2019-12-26 14:54 ./usr/share/doc/libvcflib1/changelog.Debian.gz
-rw-r--r-- root/root 2042 2019-12-10 11:44 ./usr/share/doc/libvcflib1/copyright
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-12-26 14:54 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 88 2019-12-10 11:34 ./usr/share/lintian/overrides/libvcflib1
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 200496
Build-Time: 341
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 162
Job: libvcflib_1.0.1+dfsg-2
Machine Architecture: armhf
Package: libvcflib
Package-Time: 523
Source-Version: 1.0.1+dfsg-2
Space: 200496
Status: successful
Version: 1.0.1+dfsg-2+b1
--------------------------------------------------------------------------------
Finished at 2020-01-19T11:02:32Z
Build needed 00:08:43, 200496k disk space