libvcflib →
1.0.0+dfsg-2 →
armhf → 2019-12-15 11:22:23
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| libvcflib 1.0.0+dfsg-2 (armhf) Sun, 15 Dec 2019 10:55:35 +0000 |
+==============================================================================+
Package: libvcflib
Version: 1.0.0+dfsg-2
Source Version: 1.0.0+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-2ae0852c-f1f7-40e1-8649-85e26b047a39' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.3 MB in 26s (934 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libvcflib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libvcflib.git
Please use:
git clone https://salsa.debian.org/med-team/libvcflib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 7484 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.0+dfsg-2 (dsc) [2333 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.0+dfsg-2 (tar) [7466 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libvcflib 1.0.0+dfsg-2 (diff) [15.6 kB]
Fetched 7484 kB in 1s (8115 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libvcflib-xlRsT2/libvcflib-1.0.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libvcflib-xlRsT2' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-P7I9cS/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-P7I9cS/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-P7I9cS/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2731 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (16.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12199 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-exec, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl
Filtered Build-Depends: debhelper-compat (= 12), dh-exec, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev (>= 0.0+20160702-2), libssw-dev, libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~), pkg-config, libipc-run3-perl
dpkg-deb: building package 'sbuild-build-depends-libvcflib-dummy' in '/<<BUILDDIR>>/resolver-P7I9cS/apt_archive/sbuild-build-depends-libvcflib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libvcflib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Sources [608 B]
Get:5 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ Packages [694 B]
Fetched 2635 B in 1s (3326 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libvcflib build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libdisorder-dev
libdisorder0 libelf1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts2 libicu63 libipc-run3-perl libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libsmithwaterman-dev
libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev libssw0
libsub-override-perl libtabixpp-dev libtabixpp0 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db markdown pkg-config po-debconf sensible-utils
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc
krb5-user liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix
libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libdisorder-dev
libdisorder0 libelf1 libfastahack-dev libfastahack0
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts2 libicu63 libipc-run3-perl libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librtmp1 libsigsegv2 libsmithwaterman-dev
libsmithwaterman0 libssh2-1 libssl1.1 libssw-dev libssw0
libsub-override-perl libtabixpp-dev libtabixpp0 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db markdown pkg-config po-debconf
sbuild-build-depends-libvcflib-dummy sensible-utils zlib1g-dev
0 upgraded, 68 newly installed, 0 to remove and 19 not upgraded.
Need to get 26.7 MB of archives.
After this operation, 82.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-P7I9cS/apt_archive ./ sbuild-build-depends-libvcflib-dummy 0.invalid.0 [976 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.3-2 [1137 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-exec armhf 0.23.2 [25.3 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-5 [257 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1 [73.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.3-3 [76.4 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-1 [4568 B]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-1 [4156 B]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libfastahack0 armhf 1.0.0+dfsg-2 [21.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libfastahack-dev armhf 1.0.0+dfsg-2 [22.9 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libhts2 armhf 1.9-12 [275 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.9-12 [4141 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libipc-run3-perl all 0.048-1 [37.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman0 armhf 0.0+git20160702.2610e25-7 [30.5 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libsmithwaterman-dev armhf 0.0+git20160702.2610e25-7 [34.3 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libssw0 armhf 1.1-6 [19.2 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libssw-dev armhf 1.1-6 [23.1 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp0 armhf 1.0.0-4 [7404 B]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libtabixpp-dev armhf 1.0.0-4 [7064 B]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf markdown all 1.0.1-10 [17.4 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 26.7 MB in 4s (7500 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12199 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../01-libtinfo5_6.1+20191019-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.1+20191019-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../04-groff-base_1.22.4-3_armhf.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../05-libpipeline1_1.5.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../06-man-db_2.9.0-1_armhf.deb ...
Unpacking man-db (2.9.0-1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../07-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../08-libmagic-mgc_1%3a5.37-6_armhf.deb ...
Unpacking libmagic-mgc (1:5.37-6) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../09-libmagic1_1%3a5.37-6_armhf.deb ...
Unpacking libmagic1:armhf (1:5.37-6) ...
Selecting previously unselected package file.
Preparing to unpack .../10-file_1%3a5.37-6_armhf.deb ...
Unpacking file (1:5.37-6) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../11-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../12-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../13-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../14-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../17-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package libtool.
Preparing to unpack .../18-libtool_2.4.6-11_all.deb ...
Unpacking libtool (2.4.6-11) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../19-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../20-libdebhelper-perl_12.7.1_all.deb ...
Unpacking libdebhelper-perl (12.7.1) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../21-libarchive-zip-perl_1.67-1_all.deb ...
Unpacking libarchive-zip-perl (1.67-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../22-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.6.3-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.6.3-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../24-dh-strip-nondeterminism_1.6.3-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.6.3-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../25-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../26-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../27-libglib2.0-0_2.62.3-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.62.3-2) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../28-libicu63_63.2-2_armhf.deb ...
Unpacking libicu63:armhf (63.2-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../29-libxml2_2.9.4+dfsg1-8_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-8) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../30-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../31-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../32-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../33-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../34-debhelper_12.7.1_all.deb ...
Unpacking debhelper (12.7.1) ...
Selecting previously unselected package dh-exec.
Preparing to unpack .../35-dh-exec_0.23.2_armhf.deb ...
Unpacking dh-exec (0.23.2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../36-libbrotli1_1.0.7-5_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-5) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../37-libbz2-dev_1.0.8-2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../38-libkeyutils1_1.6-6_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6-6) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../39-libkrb5support0_1.17-6+b1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-6+b1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../40-libk5crypto3_1.17-6+b1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-6+b1) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../41-libssl1.1_1.1.1d-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1d-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../42-libkrb5-3_1.17-6+b1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-6+b1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../43-libgssapi-krb5-2_1.17-6+b1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-6+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../44-libnghttp2-14_1.40.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.40.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../45-libpsl5_0.20.2-2_armhf.deb ...
Unpacking libpsl5:armhf (0.20.2-2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../46-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../47-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../48-libcurl3-gnutls_7.67.0-2_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.67.0-2) ...
Selecting previously unselected package libdeflate0.
Preparing to unpack .../49-libdeflate0_1.3-3_armhf.deb ...
Unpacking libdeflate0 (1.3-3) ...
Selecting previously unselected package libdisorder0:armhf.
Preparing to unpack .../50-libdisorder0_0.0.2+git20130809.8062ee1-1_armhf.deb ...
Unpacking libdisorder0:armhf (0.0.2+git20130809.8062ee1-1) ...
Selecting previously unselected package libdisorder-dev:armhf.
Preparing to unpack .../51-libdisorder-dev_0.0.2+git20130809.8062ee1-1_armhf.deb ...
Unpacking libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-1) ...
Selecting previously unselected package libfastahack0.
Preparing to unpack .../52-libfastahack0_1.0.0+dfsg-2_armhf.deb ...
Unpacking libfastahack0 (1.0.0+dfsg-2) ...
Selecting previously unselected package libfastahack-dev.
Preparing to unpack .../53-libfastahack-dev_1.0.0+dfsg-2_armhf.deb ...
Unpacking libfastahack-dev (1.0.0+dfsg-2) ...
Selecting previously unselected package libhts2:armhf.
Preparing to unpack .../54-libhts2_1.9-12_armhf.deb ...
Unpacking libhts2:armhf (1.9-12) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../55-liblzma-dev_5.2.4-1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.4-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../56-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../57-libhts-dev_1.9-12_armhf.deb ...
Unpacking libhts-dev:armhf (1.9-12) ...
Selecting previously unselected package libipc-run3-perl.
Preparing to unpack .../58-libipc-run3-perl_0.048-1_all.deb ...
Unpacking libipc-run3-perl (0.048-1) ...
Selecting previously unselected package libsmithwaterman0.
Preparing to unpack .../59-libsmithwaterman0_0.0+git20160702.2610e25-7_armhf.deb ...
Unpacking libsmithwaterman0 (0.0+git20160702.2610e25-7) ...
Selecting previously unselected package libsmithwaterman-dev.
Preparing to unpack .../60-libsmithwaterman-dev_0.0+git20160702.2610e25-7_armhf.deb ...
Unpacking libsmithwaterman-dev (0.0+git20160702.2610e25-7) ...
Selecting previously unselected package libssw0:armhf.
Preparing to unpack .../61-libssw0_1.1-6_armhf.deb ...
Unpacking libssw0:armhf (1.1-6) ...
Selecting previously unselected package libssw-dev:armhf.
Preparing to unpack .../62-libssw-dev_1.1-6_armhf.deb ...
Unpacking libssw-dev:armhf (1.1-6) ...
Selecting previously unselected package libtabixpp0:armhf.
Preparing to unpack .../63-libtabixpp0_1.0.0-4_armhf.deb ...
Unpacking libtabixpp0:armhf (1.0.0-4) ...
Selecting previously unselected package libtabixpp-dev:armhf.
Preparing to unpack .../64-libtabixpp-dev_1.0.0-4_armhf.deb ...
Unpacking libtabixpp-dev:armhf (1.0.0-4) ...
Selecting previously unselected package markdown.
Preparing to unpack .../65-markdown_1.0.1-10_all.deb ...
Unpacking markdown (1.0.1-10) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../66-pkg-config_0.29-6_armhf.deb ...
Unpacking pkg-config (0.29-6) ...
Selecting previously unselected package sbuild-build-depends-libvcflib-dummy.
Preparing to unpack .../67-sbuild-build-depends-libvcflib-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-libvcflib-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up libdisorder0:armhf (0.0.2+git20130809.8062ee1-1) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libmagic-mgc (1:5.37-6) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.3-2) ...
No schema files found: doing nothing.
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libdebhelper-perl (12.7.1) ...
Setting up libbrotli1:armhf (1.0.7-5) ...
Setting up libsmithwaterman0 (0.0+git20160702.2610e25-7) ...
Setting up libnghttp2-14:armhf (1.40.0-1) ...
Setting up libmagic1:armhf (1:5.37-6) ...
Setting up libdeflate0 (1.3-3) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.37-6) ...
Setting up libfastahack0 (1.0.0+dfsg-2) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up libfastahack-dev (1.0.0+dfsg-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up pkg-config (0.29-6) ...
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libipc-run3-perl (0.048-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libssw0:armhf (1.1-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up markdown (1.0.1-10) ...
Setting up libbz2-dev:armhf (1.0.8-2) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-1) ...
Setting up libssw-dev:armhf (1.1-6) ...
Setting up libtool (2.4.6-11) ...
Setting up m4 (1.4.18-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libsmithwaterman-dev (0.0+git20160702.2610e25-7) ...
Setting up autoconf (2.69-11) ...
Setting up dh-strip-nondeterminism (1.6.3-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up man-db (2.9.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libhts2:armhf (1.9-12) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.9-12) ...
Setting up libtabixpp0:armhf (1.0.0-4) ...
Setting up libtabixpp-dev:armhf (1.0.0-4) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.1) ...
Setting up dh-exec (0.23.2) ...
Setting up sbuild-build-depends-libvcflib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.1-5+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-19+rpi1+b1 gcc-9_9.2.1-19+rpi1+b1 libc6-dev_2.29-3+rpi1 libstdc++-9-dev_9.2.1-19+rpi1+b1 libstdc++6_9.2.1-19+rpi1+b1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-5+rpi1 binutils-arm-linux-gnueabihf_2.33.1-5+rpi1 binutils-common_2.33.1-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-19+rpi1+b1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-19+rpi1+b1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-19+rpi1+b1 gcc-9-base_9.2.1-19+rpi1+b1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-19+rpi1+b1 libassuan0_2.5.3-7 libatomic1_9.2.1-19+rpi1+b1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-5+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-3+rpi1 libc-dev-bin_2.29-3+rpi1 libc6_2.29-3+rpi1 libc6-dev_2.29-3+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-19+rpi1+b1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdeflate0_1.3-3 libdisorder-dev_0.0.2+git20130809.8062ee1-1 libdisorder0_0.0.2+git20130809.8062ee1-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfastahack-dev_1.0.0+dfsg-2 libfastahack0_1.0.0+dfsg-2 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-19+rpi1+b1 libgcc1_1:9.2.1-19+rpi1+b1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-5 libgomp1_9.2.1-19+rpi1+b1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.9-12 libhts2_1.9-12 libicu63_63.2-2 libidn2-0_2.2.0-2 libipc-run3-perl_0.048-1 libisl22_0.22-2 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-3 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.2-2+rpi1 libselinux1_2.9-3 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsmithwaterman-dev_0.0+git20160702.2610e25-7 libsmithwaterman0_0.0+git20160702.2610e25-7 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libssw-dev_1.1-6 libssw0_1.1-6 libstdc++-9-dev_9.2.1-19+rpi1+b1 libstdc++6_9.2.1-19+rpi1+b1 libsub-override-perl_0.09-2 libsystemd0_243-8+rpi1 libtabixpp-dev_1.0.0-4 libtabixpp0_1.0.0-4 libtasn1-6_4.14-3 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-19+rpi1+b1 libuchardet0_0.0.6-3 libudev1_243-8+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 markdown_1.0.1-10 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_5.7 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libvcflib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 6 07:23:23 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libvcflib_1.0.0+dfsg-2.dsc
dpkg-source: info: extracting libvcflib in /<<BUILDDIR>>/libvcflib-1.0.0+dfsg
dpkg-source: info: unpacking libvcflib_1.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libvcflib_1.0.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_tabixpp.patch
dpkg-source: info: applying use_debian_packaged_smithwaterman.patch
dpkg-source: info: applying multichoose.h.patch
dpkg-source: info: applying filevercmp.h.patch
dpkg-source: info: applying use_debian_packaged_fastahack.patch
dpkg-source: info: applying intervaltree.patch
dpkg-source: info: applying shared_lib.patch
dpkg-source: info: applying keep_R_files.patch
dpkg-source: info: applying use_debian_packaged_libssw.patch
dpkg-source: info: applying pkg-config.patch
dpkg-source: info: applying fix_ssw_cpp_header_name.patch
dpkg-source: info: applying fix_installation.patch
dpkg-source: info: applying dont_link_pthread
dpkg-source: info: applying override_version
dpkg-source: info: applying hardening-flags
dpkg-source: info: applying spelling
dpkg-source: info: applying 2to3.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-2ae0852c-f1f7-40e1-8649-85e26b047a39
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libvcflib
dpkg-buildpackage: info: source version 1.0.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
dh_clean
find . -name "*.o" -delete
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
if [ ! -d binaries ]; then mkdir -p binaries; fi
if [ ! -d lib ]; then mkdir -p lib; fi
if [ ! -d include ]; then mkdir -p include; fi
if [ ! -d obj ]; then mkdir -p obj; fi
echo "Source does not contain dir multichoose"
#mkdir -p filevercmp
echo "Source does not contain dir intervaltree"
Source does not contain dir multichoose
#cd multichoose && make && cp *.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
#cp /usr/share/gnulib/lib/filevercmp.* filevercmp
Source does not contain dir intervaltree
mkdir -p /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/ && cp -a debian/include/* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
#cd intervaltree && make && cp *.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
#echo 'Proper use of filevercmp would be: `gnulib-tool --import filevercmp` - but it needs ./configure.ac'
#We here go with quilt patches from upstream files
cd filevercmp && g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -fPIC -c filevercmp.c
ln -sf ../filevercmp/filevercmp.h /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/filevercmp.h
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/Variant.o src/Variant.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/rnglib.o src/rnglib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/var.o src/var.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/pdflib.o src/pdflib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/cdflib.o src/cdflib.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -o src/split.o src/split.cpp -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x && cp src/*.h* /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/include/
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual void genotype::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void pooled::loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::string, long int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/var.hpp:8,
from src/var.cpp:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
# ar rs libvcflib.a src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o filevercmp/filevercmp.o
gcc -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libvcflib.so.1 -o libvcflib.so.1 src/Variant.o src/rnglib.o src/var.o src/pdflib.o src/cdflib.o src/split.o filevercmp/filevercmp.o
ln -s libvcflib.so.1 libvcflib.so
cp -a libvcflib.so* lib
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfecho.cpp -o binaries/vcfecho -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfnormalizesvs.cpp -o binaries/vcfnormalizesvs -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/dumpContigsFromHeader.cpp -o binaries/dumpContigsFromHeader -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/bFst.cpp -o binaries/bFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/pVst.cpp -o binaries/pVst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/hapLrt.cpp -o binaries/hapLrt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/popStats.cpp -o binaries/popStats -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void phardy(std::vector<double>&, double, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/bFst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void loadPop(std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, pop&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void calc(copyNcounts*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/hapLrt.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/pVst.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void loadDat(copyNcounts*, std::string&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&, std::vector<std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > > >&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/wcFst.cpp -o binaries/wcFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/hapLrt.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/iHS.cpp -o binaries/iHS -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/segmentFst.cpp -o binaries/segmentFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/segmentIhs.cpp -o binaries/segmentIhs -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/segmentFst.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/segmentIhs.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/genotypeSummary.cpp -o binaries/genotypeSummary -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/sequenceDiversity.cpp -o binaries/sequenceDiversity -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/pFst.cpp -o binaries/pFst -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/iHS.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/smoother.cpp -o binaries/smoother -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/sequenceDiversity.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/sequenceDiversity.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from src/smoother.cpp:4:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/smoother.cpp:4:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, std::fpos<__mbstate_t> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfld.cpp -o binaries/vcfld -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/plotHaps.cpp -o binaries/plotHaps -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/abba-baba.cpp -o binaries/abba-baba -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/permuteGPAT++.cpp -o binaries/permuteGPAT++ -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
src/abba-baba.cpp: In function 'int sample_het(int&)':
src/abba-baba.cpp:74:1: warning: no return statement in function returning non-void [-Wreturn-type]
74 | }
| ^
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/permuteGPAT++.cpp:39:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/permuteGPAT++.cpp:39:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfld.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/permuteSmooth.cpp -o binaries/permuteSmooth -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/plotHaps.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfld.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/permuteSmooth.cpp:39:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/permuteSmooth.cpp:39:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool getContiguousWindow(std::vector<score*>&, std::vector<double>&, int, int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/plotHaps.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'bool permute(double, int, std::vector<score*>&, double*, double*, double*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/normalize-iHS.cpp -o binaries/normalize-iHS -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/meltEHH.cpp -o binaries/meltEHH -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfaltcount.cpp -o binaries/vcfaltcount -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/split.h:6,
from src/normalize-iHS.cpp:50:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/split.h:6,
from src/normalize-iHS.cpp:50:
/usr/include/c++/9/bits/stl_vector.h: In function 'void normalize(std::vector<iHSdat*>&, int*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfhetcount.cpp -o binaries/vcfhetcount -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfhethomratio.cpp -o binaries/vcfhethomratio -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'void loadGeneticMap(int, int)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function 'bool gDist(int, int, double*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcffilter.cpp -o binaries/vcffilter -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcf2tsv.cpp -o binaries/vcf2tsv -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/meltEHH.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfgenotypes.cpp -o binaries/vcfgenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfannotategenotypes.cpp -o binaries/vcfannotategenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfcommonsamples.cpp -o binaries/vcfcommonsamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfremovesamples.cpp -o binaries/vcfremovesamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfkeepsamples.cpp -o binaries/vcfkeepsamples -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfsamplenames.cpp -o binaries/vcfsamplenames -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfgenotypecompare.cpp -o binaries/vcfgenotypecompare -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >&&>, std::tuple<>}; _Key = std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; _Val = std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >; _Compare = std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; _Alloc = std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcffixup.cpp -o binaries/vcffixup -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfclassify.cpp -o binaries/vcfclassify -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfannotategenotypes.cpp:1:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant>, std::_Select1st<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >, std::less<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >, std::allocator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfsamplediff.cpp -o binaries/vcfsamplediff -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfremoveaberrantgenotypes.cpp -o binaries/vcfremoveaberrantgenotypes -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfrandom.cpp -o binaries/vcfrandom -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfparsealts.cpp -o binaries/vcfparsealts -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfstats.cpp -o binaries/vcfstats -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfflatten.cpp -o binaries/vcfflatten -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfprimers.cpp -o binaries/vcfprimers -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfnumalt.cpp -o binaries/vcfnumalt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfcleancomplex.cpp -o binaries/vcfcleancomplex -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfintersect.cpp -o binaries/vcfintersect -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfannotate.cpp -o binaries/vcfannotate -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfallelicprimitives.cpp -o binaries/vcfallelicprimitives -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfoverlay.cpp -o binaries/vcfoverlay -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfoverlay.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfoverlay.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> >, std::_Select1st<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<vcflib::VariantCallFile*, vcflib::Variant> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfallelicprimitives.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long unsigned int&&>, std::tuple<>}; _Key = long unsigned int; _Val = std::pair<const long unsigned int, vcflib::Variant>; _KeyOfValue = std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >; _Compare = std::less<long unsigned int>; _Alloc = std::allocator<std::pair<const long unsigned int, vcflib::Variant> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfaddinfo.cpp -o binaries/vcfaddinfo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const vcflib::VariantAllele&>, std::tuple<>}; _Key = vcflib::VariantAllele; _Val = std::pair<const vcflib::VariantAllele, double>; _KeyOfValue = std::_Select1st<std::pair<const vcflib::VariantAllele, double> >; _Compare = std::less<vcflib::VariantAllele>; _Alloc = std::allocator<std::pair<const vcflib::VariantAllele, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfkeepinfo.cpp -o binaries/vcfkeepinfo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfallelicprimitives.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long unsigned int, std::pair<const long unsigned int, vcflib::Variant>, std::_Select1st<std::pair<const long unsigned int, vcflib::Variant> >, std::less<long unsigned int>, std::allocator<std::pair<const long unsigned int, vcflib::Variant> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long unsigned int, vcflib::Variant> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<vcflib::VariantAllele, std::pair<const vcflib::VariantAllele, double>, std::_Select1st<std::pair<const vcflib::VariantAllele, double> >, std::less<vcflib::VariantAllele>, std::allocator<std::pair<const vcflib::VariantAllele, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const vcflib::VariantAllele, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfkeepgeno.cpp -o binaries/vcfkeepgeno -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfafpath.cpp -o binaries/vcfafpath -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfcountalleles.cpp -o binaries/vcfcountalleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcflength.cpp -o binaries/vcflength -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfdistance.cpp -o binaries/vcfdistance -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfafpath.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfafpath.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfrandomsample.cpp -o binaries/vcfrandomsample -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfentropy.cpp -o binaries/vcfentropy -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfglxgt.cpp -o binaries/vcfglxgt -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfroc.cpp -o binaries/vcfroc -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfcheck.cpp -o binaries/vcfcheck -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/map:60,
from src/Variant.h:6,
from src/vcfroc.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long double&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long double&&>, std::tuple<>}; _Key = long double; _Val = std::pair<const long double, std::vector<vcflib::VariantAllele*> >; _KeyOfValue = std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfstreamsort.cpp -o binaries/vcfstreamsort -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfuniq.cpp -o binaries/vcfuniq -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/map:61,
from src/Variant.h:6,
from src/vcfroc.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector<vcflib::VariantAllele*>; _Compare = std::less<long double>; _Alloc = std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfuniqalleles.cpp -o binaries/vcfuniqalleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfremap.cpp -o binaries/vcfremap -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfstreamsort.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcf2fasta.cpp -o binaries/vcf2fasta -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfstreamsort.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_map.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<long double, std::pair<const long double, std::vector<vcflib::VariantAllele*> >, std::_Select1st<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >, std::less<long double>, std::allocator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long double, std::vector<vcflib::VariantAllele*> > >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfsitesummarize.cpp -o binaries/vcfsitesummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfbreakmulti.cpp -o binaries/vcfbreakmulti -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfcreatemulti.cpp -o binaries/vcfcreatemulti -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfevenregions.cpp -o binaries/vcfevenregions -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfcat.cpp -o binaries/vcfcat -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfbreakmulti.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfcreatemulti.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfbreakmulti.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfcreatemulti.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfgenosummarize.cpp -o binaries/vcfgenosummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfgenosamplenames.cpp -o binaries/vcfgenosamplenames -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfgeno2haplo.cpp -o binaries/vcfgeno2haplo -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfleftalign.cpp -o binaries/vcfleftalign -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfcombine.cpp -o binaries/vcfcombine -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfgeno2alleles.cpp -o binaries/vcfgeno2alleles -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfleftalign.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'double entropy(const string&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfgeno2haplo.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<vcflib::Variant>::iterator' {aka '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfgeno2haplo.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator<vcflib::Variant>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<vcflib::Variant*, std::vector<vcflib::Variant> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfindex.cpp -o binaries/vcfindex -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcf2dag.cpp -o binaries/vcf2dag -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfsample2info.cpp -o binaries/vcfsample2info -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfqual2info.cpp -o binaries/vcfqual2info -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfinfo2qual.cpp -o binaries/vcfinfo2qual -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/queue:62,
from src/Variant.h:14,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/smithwaterman/SmithWatermanGotoh.h:4,
from src/Variant.h:21,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'double median(std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:4794:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4794 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4795 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4796 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfsample2info.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfglbound.cpp -o binaries/vcfglbound -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfunphase.cpp -o binaries/vcfunphase -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfnull2ref.cpp -o binaries/vcfnull2ref -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now src/vcfinfosummarize.cpp -o binaries/vcfinfosummarize -I/usr/include/smithwaterman -I/usr/include/fastahack -Iinclude -Llib -lvcflib -ltabixpp -lhts -lsmithwaterman -ldisorder -lfastahack -Wl,-z,relro -Wl,-z,now -lz -lm -llzma -lbz2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -DVERSION=\"1.0.0+dfsg-2\"
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfglbound.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfglbound.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from src/Variant.h:4,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/queue:62,
from src/Variant.h:14,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/smithwaterman/SmithWatermanGotoh.h:4,
from src/Variant.h:21,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'double median(std::vector<double>&)':
/usr/include/c++/9/bits/stl_algo.h:4794:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4794 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4795 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4796 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from src/Variant.h:4,
from src/vcfinfosummarize.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
cp scripts/* binaries
make[2]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
markdown README.md > README.html
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
export LD_LIBRARY_PATH=/<<BUILDDIR>>/libvcflib-1.0.0+dfsg/lib/:D_LIBRARY_PATH dh_auto_test
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
dh_install
find debian -name filevercmp.h -delete
cp -a filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/
mkdir -p debian/libvcflib-dev/usr/include/intervaltree
mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree
mv debian/libvcflib-tools/usr/lib/vcflib/binaries debian/libvcflib-tools/usr/lib/vcflib/bin
# install pkg-config file
mkdir -p /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv libvcflib.pc /<<BUILDDIR>>/libvcflib-1.0.0+dfsg/debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
rm -rf debian/*/usr/lib/vcflib/bin/*.R
for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
grep: debian/libvcflib-dev/usr/lib/arm-linux-gnueabihf/libvcflib.so: No such file or directory
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
dh_fixperms
chmod -x debian/*/usr/lib/R/site-library/*/*.R
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
dh_missing -a
debian/rules override_dh_dwz
make[1]: Entering directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
echo "Do nothing here"
Do nothing here
make[1]: Leaving directory '/<<BUILDDIR>>/libvcflib-1.0.0+dfsg'
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol _ZNSo9_M_insertIdEERSoT_ used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE9_M_mutateEjjPKcj used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZSt28_Rb_tree_rebalance_for_erasePSt18_Rb_tree_node_baseRS_ used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZSt18_Rb_tree_decrementPSt18_Rb_tree_node_base used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@GLIBC_2.4 used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1118basic_stringstreamIcSt11char_traitsIcESaIcEEC1Ev used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7compareERKS4_ used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZTVNSt7__cxx1119basic_ostringstreamIcSt11char_traitsIcESaIcEEE used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _Znaj used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol _ZSt20__throw_out_of_rangePKc used by debian/libvcflib1/usr/lib/arm-linux-gnueabihf/libvcflib.so.1 found in none of the libraries
dpkg-shlibdeps: warning: 101 other similar warnings have been skipped (use -v to see them all)
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/popStats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/bFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/smoother contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pVst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/popStats debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnull2ref debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine debian/libvcflib-tools/usr/lib/vcflib/bin/vcfunphase debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay debian/libvcflib-tools/usr/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo debian/libvcflib-tools/usr/bin/vcf2tsv debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info debian/libvcflib-tools/usr/lib/vcflib/bin/pFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample debian/libvcflib-tools/usr/lib/vcflib/bin/bFst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnormalizesvs debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions debian/libvcflib-tools/usr/lib/vcflib/bin/smoother debian/libvcflib-tools/usr/lib/vcflib/bin/iHS debian/libvcflib-tools/usr/bin/vcfkeepinfo debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort debian/libvcflib-tools/usr/lib/vcflib/bin/pVst debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package libvcflib-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libvcflib1' in '../libvcflib1_1.0.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libvcflib1-dbgsym' in '../libvcflib1-dbgsym_1.0.0+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libvcflib_1.0.0+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-12-15T11:22:05Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libvcflib_1.0.0+dfsg-2_armhf.changes:
-------------------------------------
Format: 1.8
Date: Fri, 06 Sep 2019 09:05:48 +0200
Source: libvcflib
Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym
Architecture: armhf
Version: 1.0.0+dfsg-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libvcflib-dev - C++ library for parsing and manipulating VCF files (development)
libvcflib-tools - C++ library for parsing and manipulating VCF files (tools)
libvcflib1 - C++ library for parsing and manipulating VCF files
Closes: 936930
Changes:
libvcflib (1.0.0+dfsg-2) unstable; urgency=medium
.
* Use 2to3 to port to Python3
Closes: #936930
* Use markdown instead of python-markdown
Checksums-Sha1:
563ed61ab5f90643e27ca86faf4751f6c1f805b9 27892 libvcflib-dev_1.0.0+dfsg-2_armhf.deb
6d70150efd1ac09681968617a9f7a1b8d5865e5b 20432764 libvcflib-tools-dbgsym_1.0.0+dfsg-2_armhf.deb
95672040f3a0751551b50b2909542469424cc815 511436 libvcflib-tools_1.0.0+dfsg-2_armhf.deb
d095d7b789ce107cfc996dc9246e28c5befe59d1 1453228 libvcflib1-dbgsym_1.0.0+dfsg-2_armhf.deb
b658dda2a4dd071f28ee758e37e06e7837b06705 126576 libvcflib1_1.0.0+dfsg-2_armhf.deb
73a190338cfb12031355e83f738c000faea1cf2a 6798 libvcflib_1.0.0+dfsg-2_armhf.buildinfo
Checksums-Sha256:
5709bb753f6835158f2647c9d14ddbc0e7fcf687dcf1be0c142bca9e5c80a937 27892 libvcflib-dev_1.0.0+dfsg-2_armhf.deb
af1d0035021e78c2037a3f40cdb4ecddeb5386c01bfc82fc043ed0a46541b392 20432764 libvcflib-tools-dbgsym_1.0.0+dfsg-2_armhf.deb
d2cb7607cf6cba7c5641d27a52c4595d12d1f7d237bef9f089a24e8224984710 511436 libvcflib-tools_1.0.0+dfsg-2_armhf.deb
7de0ef6231dac9b2d8c899907fa4c1d5c061410a9b0fe029d1c1eb15d42d68a6 1453228 libvcflib1-dbgsym_1.0.0+dfsg-2_armhf.deb
ba3b7091bd3027f25b3b7a8453d98c78030974e98638994c6448320fee4ebce2 126576 libvcflib1_1.0.0+dfsg-2_armhf.deb
b43c90edb6fda1458e429b0afef9d5a5bb39b2ccf00dcd7f60cf063c58ca1d1d 6798 libvcflib_1.0.0+dfsg-2_armhf.buildinfo
Files:
c0cef4720b71b583d1ad63f4842d8372 27892 libdevel optional libvcflib-dev_1.0.0+dfsg-2_armhf.deb
096137861de108eff0f6fc33de19553a 20432764 debug optional libvcflib-tools-dbgsym_1.0.0+dfsg-2_armhf.deb
a21d99990d772f96981be78f26ffe174 511436 science optional libvcflib-tools_1.0.0+dfsg-2_armhf.deb
294bd1c500d089e8a1dad39d8d44e5ea 1453228 debug optional libvcflib1-dbgsym_1.0.0+dfsg-2_armhf.deb
7976b7a1a8ca9f9c15010c08160f854d 126576 libs optional libvcflib1_1.0.0+dfsg-2_armhf.deb
66a756a10ec0b3f352e78689ace9e4e3 6798 science optional libvcflib_1.0.0+dfsg-2_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libvcflib-dev_1.0.0+dfsg-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 27892 bytes: control archive=1440 bytes.
1248 bytes, 26 lines control
1032 bytes, 15 lines md5sums
Package: libvcflib-dev
Source: libvcflib
Version: 1.0.0+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 166
Depends: libvcflib1 (= 1.0.0+dfsg-2), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev
Section: libdevel
Priority: optional
Homepage: https://github.com/ekg/vcflib
Description: C++ library for parsing and manipulating VCF files (development)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2019-09-06 07:05 ./
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/include/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/include/intervaltree/
-rw-r--r-- root/root 11811 2019-09-06 07:05 ./usr/include/intervaltree/IntervalTree.h
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/include/vcflib/
-rw-r--r-- root/root 5601 2019-09-06 07:05 ./usr/include/vcflib/BedReader.h
-rw-r--r-- root/root 22637 2019-09-06 07:05 ./usr/include/vcflib/Variant.h
-rw-r--r-- root/root 470 2019-09-06 07:05 ./usr/include/vcflib/convert.h
-rw-r--r-- root/root 1853 2019-09-06 07:05 ./usr/include/vcflib/filevercmp.h
-rw-r--r-- root/root 1011 2019-09-06 07:05 ./usr/include/vcflib/join.h
-rw-r--r-- root/root 6353 2019-09-06 07:05 ./usr/include/vcflib/mt19937ar.h
-rw-r--r-- root/root 2155 2019-09-06 07:05 ./usr/include/vcflib/multichoose.h
-rw-r--r-- root/root 1598 2019-09-06 07:05 ./usr/include/vcflib/split.h
-rw-r--r-- root/root 75369 2019-09-06 07:05 ./usr/include/vcflib/vec128int.h
-rw-r--r-- root/root 13921 2019-09-06 07:05 ./usr/include/vcflib/veclib_types.h
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2019-09-06 07:05 ./usr/lib/arm-linux-gnueabihf/libvcflib.so -> libvcflib.so.1
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 283 2019-09-06 07:05 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libvcflib.pc
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/libvcflib-dev/
-rw-r--r-- root/root 1412 2019-09-06 07:05 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz
-rw-r--r-- root/root 1887 2019-09-06 07:05 ./usr/share/doc/libvcflib-dev/copyright
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 91 2019-09-06 07:05 ./usr/share/lintian/overrides/libvcflib-dev
libvcflib-tools-dbgsym_1.0.0+dfsg-2_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 20432764 bytes: control archive=4368 bytes.
3893 bytes, 12 lines control
9116 bytes, 86 lines md5sums
Package: libvcflib-tools-dbgsym
Source: libvcflib
Version: 1.0.0+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 21403
Depends: libvcflib-tools (= 1.0.0+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for libvcflib-tools
Build-Ids: 004721c5b98760a53cdcffe901ed5c8002bd34b2 012a219e9eaa8f0f4eed08a60b306d5c821dd2f8 04838fa6d6fe5902063329fb74465213902a7711 062531c51d27098a85f46c90311c9ad51cda375e 068f58955f1332a31baa9209cdebe160513d91ae 081c2b701970c842c75fa62319de74f28cbabf3f 0873a248e8717de9925890eef17e8edc7e42a6c7 092641c544da0c18ef16b912e4d4fd537f900518 105afa139f01ac264915417520a64c533d2bf4a6 10b4a70f4d7738b9610a92c744f03d33d0c95d5a 1844fc59acddf7b5601b22256fc1026a916b0883 194ade9598910d8acef4fe749e4e228f84c12e3d 1aad3b8354cbcbe0d17ed398c705b2408c660b6d 1f6492f472bef7c90278685c249679018b425372 1f78499998408a7e62f384b7ae7f91a70e87ad67 249c14979b4b1347db8882711c57aaafbc800911 2574b3ca472500dda2af077398f6d28bf882d4df 2ade24e516c422bdfc662b1fa5aa6197fa424a59 2cbb17de1d5a99d690e9e56ed829dfb70added38 385490b5223e107bbf9ba8c70dd7ff07f2fd3275 3a10e4d02ccd3061a38f97cfc8611b7188251478 3f56d31c5821ac826c9873ca53d6f379f90673be 3f9aeb97c127047655ac2e60644bff50e6da1148 4070cbab13e37e16415b0d8bf5e1271145ae66f1 4bf4748f2af5175523972448d0eaeaf11a44216a 4f5bf12cde28aa9dab7d571ada1ee79aed28a947 503e65836787ac32b413715d48710aa0c369df53 55db6b4fd2c3bfcfdf2e6e36cabecdedfb591f85 5601301dbf92a571e35fab660462b825ab13b142 56f0efe6d3fa6fe804673012740e982c84e71590 5ebe52086239764888b2226adab388bf1e72a469 61c2cdc024b19e2265d334fe120665b68d348ed8 63fdf7a4f6f621bd88ad7e196990a9259712eb58 66b3ea8a3e1457ab622134bbdfebcba663fdd958 66faa764d4fc5fb0e14c1bc3bcd24476d421be69 6722beb6a2495bb1ecd2badd6151b4e933267a76 69fb45564351fcd4fa7a68626ee67fb251091832 71280a02f74259f4c374f9b466445009f954d6f9 76a5eccc524a7fac60e9fd97ffe6dc4d80b5dd73 76d67253e68e6731ac2205358be32e09d4399eb9 7728f2e5960d9a741744675334d5a5c55cd2bb38 7c1bee00d36a1cb2ac7bf60f46749e1e746987d0 839df403202032c6a569703702f190a56f7d9d53 890535f25a82cc8ca2c6aff0ee761975d2cb81bc 8bee834f510ef5490322adc490c0bc97cf6f7928 9073674f712e49b0ec95b1cd2868d9ea1eeee257 932a1542936e721b879ca1bf9e17742cc98fbfe6 988e56ed9ad1296789d74a8881a5cbae09b92a72 9bc745d7e64deca9edc9dc1d5b221abddf246435 9d5671ceeed13fbbdae7db3dc89d72a6c17296e2 9f78476264c9eee2157b4afa9781e1e921a764f0 a09359425cd3a76febd0a03e6d4a61552f5c7c53 a22d57fd044dc78126df1ebca12ed8348f3d10fe a6279041b0355bbcb9a39dfcdc20ea89fcbfc441 aa1b016bf0f30a7f37d03cfa6a3db5adbdd87443 ab565d7e408673184d843bab57f186db09ed8692 c146666ad305232a7c267293de4bf4808de7b562 c14eb0fa901ee0173e5e340830c93a36d0c77a2f c16864e06145c30bc240eca4efdbfb86f4c11174 c2fbf754a61d67af8d2bf8ea9d4406ef67223bbe c6e530838346d9bf37694adb7cdc5ed8ccdf81e4 cb3ea01e95f94c1030feb540abfb179518799896 ce8010d452517f3c2d379cc9d1b347c922bfa29a d310b97d3be7f61e8b8415677343449aaa7e940f d618962cbf0b61bff85005ad04c0c36d8a56f8b6 d6660ac4b819017bf49b72994db3ff64c05f8f4c d8d0afabd4c5341eaece1f6c8fd45b403cc41f8b da8284ff6dc27435a56811fe17b308a9fff6afad db825858b6fb1e8916ccb01d99a458a4decc1fbf de96a94cebf16c33b1c5dac2705d228dcde78646 e0cea100f4cdff811ce10c8d069ecbfd92f0d35e e33b816e435339470b68edeaeb76d513c3644aa9 e3a1898e308d5a561f012865c9ac7e7a7b85964b e4683176d0bd438e5bf07aa22dccc221fd0343d4 e7beb79f2f0ec9bdce147bac68aa3898a73442ed e8a6decc95ac087d4f7ebcd661882cd84b4c4f23 ea1abd156ce360030d4146a506faaaf4a350674f ea40558c70a7a8cb8c20c36330f22b07ed0e2c33 eb050d03590092ac6ce06190526a6e2b6f9c4571 ec07b517b3504cca8972a21c3eae59d3f66597f9 ef398e3fcdd14bbfef09e1b865728187af491ccd efad68d2971330c6aaba523b33a4c0b5a25c5e62 f36dadbed54b2e32480189dbfd79b394af225c1e f66d231e47002fda15d6c3abc8e883140182a794 f854650ebb4acb37d45cd92c87fdbfe6cb9eca89 fd5b3b73cabe4e5d05bcd56b64c4f16f27847376
drwxr-xr-x root/root 0 2019-09-06 07:05 ./
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/00/
-rw-r--r-- root/root 178648 2019-09-06 07:05 ./usr/lib/debug/.build-id/00/4721c5b98760a53cdcffe901ed5c8002bd34b2.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/01/
-rw-r--r-- root/root 405876 2019-09-06 07:05 ./usr/lib/debug/.build-id/01/2a219e9eaa8f0f4eed08a60b306d5c821dd2f8.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/04/
-rw-r--r-- root/root 172176 2019-09-06 07:05 ./usr/lib/debug/.build-id/04/838fa6d6fe5902063329fb74465213902a7711.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 178740 2019-09-06 07:05 ./usr/lib/debug/.build-id/06/2531c51d27098a85f46c90311c9ad51cda375e.debug
-rw-r--r-- root/root 187992 2019-09-06 07:05 ./usr/lib/debug/.build-id/06/8f58955f1332a31baa9209cdebe160513d91ae.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/08/
-rw-r--r-- root/root 189720 2019-09-06 07:05 ./usr/lib/debug/.build-id/08/1c2b701970c842c75fa62319de74f28cbabf3f.debug
-rw-r--r-- root/root 71444 2019-09-06 07:05 ./usr/lib/debug/.build-id/08/73a248e8717de9925890eef17e8edc7e42a6c7.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/09/
-rw-r--r-- root/root 379832 2019-09-06 07:05 ./usr/lib/debug/.build-id/09/2641c544da0c18ef16b912e4d4fd537f900518.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root 215448 2019-09-06 07:05 ./usr/lib/debug/.build-id/10/5afa139f01ac264915417520a64c533d2bf4a6.debug
-rw-r--r-- root/root 162304 2019-09-06 07:05 ./usr/lib/debug/.build-id/10/b4a70f4d7738b9610a92c744f03d33d0c95d5a.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/18/
-rw-r--r-- root/root 119108 2019-09-06 07:05 ./usr/lib/debug/.build-id/18/44fc59acddf7b5601b22256fc1026a916b0883.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root 388396 2019-09-06 07:05 ./usr/lib/debug/.build-id/19/4ade9598910d8acef4fe749e4e228f84c12e3d.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/1a/
-rw-r--r-- root/root 202352 2019-09-06 07:05 ./usr/lib/debug/.build-id/1a/ad3b8354cbcbe0d17ed398c705b2408c660b6d.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/1f/
-rw-r--r-- root/root 241392 2019-09-06 07:05 ./usr/lib/debug/.build-id/1f/6492f472bef7c90278685c249679018b425372.debug
-rw-r--r-- root/root 174868 2019-09-06 07:05 ./usr/lib/debug/.build-id/1f/78499998408a7e62f384b7ae7f91a70e87ad67.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/24/
-rw-r--r-- root/root 720008 2019-09-06 07:05 ./usr/lib/debug/.build-id/24/9c14979b4b1347db8882711c57aaafbc800911.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/25/
-rw-r--r-- root/root 215004 2019-09-06 07:05 ./usr/lib/debug/.build-id/25/74b3ca472500dda2af077398f6d28bf882d4df.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/2a/
-rw-r--r-- root/root 186356 2019-09-06 07:05 ./usr/lib/debug/.build-id/2a/de24e516c422bdfc662b1fa5aa6197fa424a59.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/2c/
-rw-r--r-- root/root 617052 2019-09-06 07:05 ./usr/lib/debug/.build-id/2c/bb17de1d5a99d690e9e56ed829dfb70added38.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/38/
-rw-r--r-- root/root 140568 2019-09-06 07:05 ./usr/lib/debug/.build-id/38/5490b5223e107bbf9ba8c70dd7ff07f2fd3275.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/3a/
-rw-r--r-- root/root 228388 2019-09-06 07:05 ./usr/lib/debug/.build-id/3a/10e4d02ccd3061a38f97cfc8611b7188251478.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root 210556 2019-09-06 07:05 ./usr/lib/debug/.build-id/3f/56d31c5821ac826c9873ca53d6f379f90673be.debug
-rw-r--r-- root/root 303656 2019-09-06 07:05 ./usr/lib/debug/.build-id/3f/9aeb97c127047655ac2e60644bff50e6da1148.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/40/
-rw-r--r-- root/root 141836 2019-09-06 07:05 ./usr/lib/debug/.build-id/40/70cbab13e37e16415b0d8bf5e1271145ae66f1.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/4b/
-rw-r--r-- root/root 225776 2019-09-06 07:05 ./usr/lib/debug/.build-id/4b/f4748f2af5175523972448d0eaeaf11a44216a.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root 154600 2019-09-06 07:05 ./usr/lib/debug/.build-id/4f/5bf12cde28aa9dab7d571ada1ee79aed28a947.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root 173852 2019-09-06 07:05 ./usr/lib/debug/.build-id/50/3e65836787ac32b413715d48710aa0c369df53.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/55/
-rw-r--r-- root/root 131296 2019-09-06 07:05 ./usr/lib/debug/.build-id/55/db6b4fd2c3bfcfdf2e6e36cabecdedfb591f85.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/56/
-rw-r--r-- root/root 156212 2019-09-06 07:05 ./usr/lib/debug/.build-id/56/01301dbf92a571e35fab660462b825ab13b142.debug
-rw-r--r-- root/root 322612 2019-09-06 07:05 ./usr/lib/debug/.build-id/56/f0efe6d3fa6fe804673012740e982c84e71590.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/5e/
-rw-r--r-- root/root 180156 2019-09-06 07:05 ./usr/lib/debug/.build-id/5e/be52086239764888b2226adab388bf1e72a469.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/61/
-rw-r--r-- root/root 192668 2019-09-06 07:05 ./usr/lib/debug/.build-id/61/c2cdc024b19e2265d334fe120665b68d348ed8.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/63/
-rw-r--r-- root/root 356088 2019-09-06 07:05 ./usr/lib/debug/.build-id/63/fdf7a4f6f621bd88ad7e196990a9259712eb58.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/66/
-rw-r--r-- root/root 549448 2019-09-06 07:05 ./usr/lib/debug/.build-id/66/b3ea8a3e1457ab622134bbdfebcba663fdd958.debug
-rw-r--r-- root/root 358844 2019-09-06 07:05 ./usr/lib/debug/.build-id/66/faa764d4fc5fb0e14c1bc3bcd24476d421be69.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/67/
-rw-r--r-- root/root 269188 2019-09-06 07:05 ./usr/lib/debug/.build-id/67/22beb6a2495bb1ecd2badd6151b4e933267a76.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/69/
-rw-r--r-- root/root 180900 2019-09-06 07:05 ./usr/lib/debug/.build-id/69/fb45564351fcd4fa7a68626ee67fb251091832.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/71/
-rw-r--r-- root/root 174468 2019-09-06 07:05 ./usr/lib/debug/.build-id/71/280a02f74259f4c374f9b466445009f954d6f9.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/76/
-rw-r--r-- root/root 272688 2019-09-06 07:05 ./usr/lib/debug/.build-id/76/a5eccc524a7fac60e9fd97ffe6dc4d80b5dd73.debug
-rw-r--r-- root/root 268024 2019-09-06 07:05 ./usr/lib/debug/.build-id/76/d67253e68e6731ac2205358be32e09d4399eb9.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/77/
-rw-r--r-- root/root 353728 2019-09-06 07:05 ./usr/lib/debug/.build-id/77/28f2e5960d9a741744675334d5a5c55cd2bb38.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root 258904 2019-09-06 07:05 ./usr/lib/debug/.build-id/7c/1bee00d36a1cb2ac7bf60f46749e1e746987d0.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/83/
-rw-r--r-- root/root 348392 2019-09-06 07:05 ./usr/lib/debug/.build-id/83/9df403202032c6a569703702f190a56f7d9d53.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/89/
-rw-r--r-- root/root 329964 2019-09-06 07:05 ./usr/lib/debug/.build-id/89/0535f25a82cc8ca2c6aff0ee761975d2cb81bc.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/8b/
-rw-r--r-- root/root 174092 2019-09-06 07:05 ./usr/lib/debug/.build-id/8b/ee834f510ef5490322adc490c0bc97cf6f7928.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/90/
-rw-r--r-- root/root 328528 2019-09-06 07:05 ./usr/lib/debug/.build-id/90/73674f712e49b0ec95b1cd2868d9ea1eeee257.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/93/
-rw-r--r-- root/root 344296 2019-09-06 07:05 ./usr/lib/debug/.build-id/93/2a1542936e721b879ca1bf9e17742cc98fbfe6.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/98/
-rw-r--r-- root/root 273792 2019-09-06 07:05 ./usr/lib/debug/.build-id/98/8e56ed9ad1296789d74a8881a5cbae09b92a72.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/9b/
-rw-r--r-- root/root 185352 2019-09-06 07:05 ./usr/lib/debug/.build-id/9b/c745d7e64deca9edc9dc1d5b221abddf246435.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/9d/
-rw-r--r-- root/root 181956 2019-09-06 07:05 ./usr/lib/debug/.build-id/9d/5671ceeed13fbbdae7db3dc89d72a6c17296e2.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/9f/
-rw-r--r-- root/root 548532 2019-09-06 07:05 ./usr/lib/debug/.build-id/9f/78476264c9eee2157b4afa9781e1e921a764f0.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/a0/
-rw-r--r-- root/root 190404 2019-09-06 07:05 ./usr/lib/debug/.build-id/a0/9359425cd3a76febd0a03e6d4a61552f5c7c53.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/a2/
-rw-r--r-- root/root 178328 2019-09-06 07:05 ./usr/lib/debug/.build-id/a2/2d57fd044dc78126df1ebca12ed8348f3d10fe.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/a6/
-rw-r--r-- root/root 365192 2019-09-06 07:05 ./usr/lib/debug/.build-id/a6/279041b0355bbcb9a39dfcdc20ea89fcbfc441.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/aa/
-rw-r--r-- root/root 190312 2019-09-06 07:05 ./usr/lib/debug/.build-id/aa/1b016bf0f30a7f37d03cfa6a3db5adbdd87443.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root 238816 2019-09-06 07:05 ./usr/lib/debug/.build-id/ab/565d7e408673184d843bab57f186db09ed8692.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/c1/
-rw-r--r-- root/root 734184 2019-09-06 07:05 ./usr/lib/debug/.build-id/c1/46666ad305232a7c267293de4bf4808de7b562.debug
-rw-r--r-- root/root 356248 2019-09-06 07:05 ./usr/lib/debug/.build-id/c1/4eb0fa901ee0173e5e340830c93a36d0c77a2f.debug
-rw-r--r-- root/root 157600 2019-09-06 07:05 ./usr/lib/debug/.build-id/c1/6864e06145c30bc240eca4efdbfb86f4c11174.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/c2/
-rw-r--r-- root/root 314228 2019-09-06 07:05 ./usr/lib/debug/.build-id/c2/fbf754a61d67af8d2bf8ea9d4406ef67223bbe.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/c6/
-rw-r--r-- root/root 155812 2019-09-06 07:05 ./usr/lib/debug/.build-id/c6/e530838346d9bf37694adb7cdc5ed8ccdf81e4.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/cb/
-rw-r--r-- root/root 164768 2019-09-06 07:05 ./usr/lib/debug/.build-id/cb/3ea01e95f94c1030feb540abfb179518799896.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/ce/
-rw-r--r-- root/root 235524 2019-09-06 07:05 ./usr/lib/debug/.build-id/ce/8010d452517f3c2d379cc9d1b347c922bfa29a.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/d3/
-rw-r--r-- root/root 193432 2019-09-06 07:05 ./usr/lib/debug/.build-id/d3/10b97d3be7f61e8b8415677343449aaa7e940f.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/d6/
-rw-r--r-- root/root 277692 2019-09-06 07:05 ./usr/lib/debug/.build-id/d6/18962cbf0b61bff85005ad04c0c36d8a56f8b6.debug
-rw-r--r-- root/root 306132 2019-09-06 07:05 ./usr/lib/debug/.build-id/d6/660ac4b819017bf49b72994db3ff64c05f8f4c.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/d8/
-rw-r--r-- root/root 355988 2019-09-06 07:05 ./usr/lib/debug/.build-id/d8/d0afabd4c5341eaece1f6c8fd45b403cc41f8b.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/da/
-rw-r--r-- root/root 192100 2019-09-06 07:05 ./usr/lib/debug/.build-id/da/8284ff6dc27435a56811fe17b308a9fff6afad.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root 141024 2019-09-06 07:05 ./usr/lib/debug/.build-id/db/825858b6fb1e8916ccb01d99a458a4decc1fbf.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root 112356 2019-09-06 07:05 ./usr/lib/debug/.build-id/de/96a94cebf16c33b1c5dac2705d228dcde78646.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/e0/
-rw-r--r-- root/root 162064 2019-09-06 07:05 ./usr/lib/debug/.build-id/e0/cea100f4cdff811ce10c8d069ecbfd92f0d35e.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/e3/
-rw-r--r-- root/root 173368 2019-09-06 07:05 ./usr/lib/debug/.build-id/e3/3b816e435339470b68edeaeb76d513c3644aa9.debug
-rw-r--r-- root/root 670428 2019-09-06 07:05 ./usr/lib/debug/.build-id/e3/a1898e308d5a561f012865c9ac7e7a7b85964b.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/e4/
-rw-r--r-- root/root 221568 2019-09-06 07:05 ./usr/lib/debug/.build-id/e4/683176d0bd438e5bf07aa22dccc221fd0343d4.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/e7/
-rw-r--r-- root/root 93248 2019-09-06 07:05 ./usr/lib/debug/.build-id/e7/beb79f2f0ec9bdce147bac68aa3898a73442ed.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/e8/
-rw-r--r-- root/root 177424 2019-09-06 07:05 ./usr/lib/debug/.build-id/e8/a6decc95ac087d4f7ebcd661882cd84b4c4f23.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/ea/
-rw-r--r-- root/root 90772 2019-09-06 07:05 ./usr/lib/debug/.build-id/ea/1abd156ce360030d4146a506faaaf4a350674f.debug
-rw-r--r-- root/root 202132 2019-09-06 07:05 ./usr/lib/debug/.build-id/ea/40558c70a7a8cb8c20c36330f22b07ed0e2c33.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root 214044 2019-09-06 07:05 ./usr/lib/debug/.build-id/eb/050d03590092ac6ce06190526a6e2b6f9c4571.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/ec/
-rw-r--r-- root/root 90704 2019-09-06 07:05 ./usr/lib/debug/.build-id/ec/07b517b3504cca8972a21c3eae59d3f66597f9.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/ef/
-rw-r--r-- root/root 247760 2019-09-06 07:05 ./usr/lib/debug/.build-id/ef/398e3fcdd14bbfef09e1b865728187af491ccd.debug
-rw-r--r-- root/root 386376 2019-09-06 07:05 ./usr/lib/debug/.build-id/ef/ad68d2971330c6aaba523b33a4c0b5a25c5e62.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/f3/
-rw-r--r-- root/root 152492 2019-09-06 07:05 ./usr/lib/debug/.build-id/f3/6dadbed54b2e32480189dbfd79b394af225c1e.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/f6/
-rw-r--r-- root/root 330728 2019-09-06 07:05 ./usr/lib/debug/.build-id/f6/6d231e47002fda15d6c3abc8e883140182a794.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/f8/
-rw-r--r-- root/root 227356 2019-09-06 07:05 ./usr/lib/debug/.build-id/f8/54650ebb4acb37d45cd92c87fdbfe6cb9eca89.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/fd/
-rw-r--r-- root/root 165584 2019-09-06 07:05 ./usr/lib/debug/.build-id/fd/5b3b73cabe4e5d05bcd56b64c4f16f27847376.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-09-06 07:05 ./usr/share/doc/libvcflib-tools-dbgsym -> libvcflib-tools
libvcflib-tools_1.0.0+dfsg-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 511436 bytes: control archive=4592 bytes.
1499 bytes, 29 lines control
9220 bytes, 138 lines md5sums
Package: libvcflib-tools
Source: libvcflib
Version: 1.0.0+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3149
Depends: libc6 (>= 2.29), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc1 (>= 1:3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 9), libtabixpp0, libvcflib1 (>= 1.0.0+dfsg), python3, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase
Suggests: r-cran-pracma
Breaks: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Replaces: libvcflib1 (<= 1.0.0~rc2+dfsg-3)
Section: science
Priority: optional
Homepage: https://github.com/ekg/vcflib
Description: C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
.
This package contains several tools using the library.
drwxr-xr-x root/root 0 2019-09-06 07:05 ./
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/bin/
-rwxr-xr-x root/root 34376 2019-09-06 07:05 ./usr/bin/vcf2tsv
-rwxr-xr-x root/root 50904 2019-09-06 07:05 ./usr/bin/vcffilter
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/bin/vcfkeepinfo
-rwxr-xr-x root/root 404 2019-09-06 07:05 ./usr/bin/vcflib
lrwxrwxrwx root/root 0 2019-09-06 07:05 ./usr/bin/vcfstreamsort -> ../lib/vcflib/bin/vcfstreamsort
lrwxrwxrwx root/root 0 2019-09-06 07:05 ./usr/bin/vcfuniq -> ../lib/vcflib/bin/vcfuniq
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/R/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/
-rw-r--r-- root/root 519 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/plotBfst.R
-rw-r--r-- root/root 566 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/plotHapLrt.R
-rw-r--r-- root/root 646 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/plotHaplotypes.R
-rw-r--r-- root/root 511 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/plotPfst.R
-rw-r--r-- root/root 1314 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/plotSmoothed.R
-rw-r--r-- root/root 483 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/plotWCfst.R
-rw-r--r-- root/root 474 2019-09-06 07:05 ./usr/lib/R/site-library/vcflib/plotXPEHH.R
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/vcflib/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/vcflib/bin/
-rwxr-xr-x root/root 42504 2019-09-06 07:05 ./usr/lib/vcflib/bin/abba-baba
-rwxr-xr-x root/root 46600 2019-09-06 07:05 ./usr/lib/vcflib/bin/bFst
-rwxr-xr-x root/root 171 2019-09-06 07:05 ./usr/lib/vcflib/bin/bed2region
-rwxr-xr-x root/root 234 2019-09-06 07:05 ./usr/lib/vcflib/bin/bgziptabix
-rwxr-xr-x root/root 13832 2019-09-06 07:05 ./usr/lib/vcflib/bin/dumpContigsFromHeader
-rwxr-xr-x root/root 42504 2019-09-06 07:05 ./usr/lib/vcflib/bin/genotypeSummary
-rwxr-xr-x root/root 46600 2019-09-06 07:05 ./usr/lib/vcflib/bin/hapLrt
-rwxr-xr-x root/root 54792 2019-09-06 07:05 ./usr/lib/vcflib/bin/iHS
-rwxr-xr-x root/root 50696 2019-09-06 07:05 ./usr/lib/vcflib/bin/meltEHH
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/normalize-iHS
-rwxr-xr-x root/root 42504 2019-09-06 07:05 ./usr/lib/vcflib/bin/pFst
-rwxr-xr-x root/root 50700 2019-09-06 07:05 ./usr/lib/vcflib/bin/pVst
-rwxr-xr-x root/root 13832 2019-09-06 07:05 ./usr/lib/vcflib/bin/permuteGPAT++
-rwxr-xr-x root/root 26120 2019-09-06 07:05 ./usr/lib/vcflib/bin/permuteSmooth
-rwxr-xr-x root/root 42504 2019-09-06 07:05 ./usr/lib/vcflib/bin/plotHaps
-rwxr-xr-x root/root 6005 2019-09-06 07:05 ./usr/lib/vcflib/bin/plot_roc.r
-rwxr-xr-x root/root 42504 2019-09-06 07:05 ./usr/lib/vcflib/bin/popStats
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/segmentFst
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/segmentIhs
-rwxr-xr-x root/root 50696 2019-09-06 07:05 ./usr/lib/vcflib/bin/sequenceDiversity
-rwxr-xr-x root/root 30344 2019-09-06 07:05 ./usr/lib/vcflib/bin/smoother
-rwxr-xr-x root/root 433 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcf2bed.py
-rwxr-xr-x root/root 34360 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcf2dag
-rwxr-xr-x root/root 46696 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcf2fasta
-rwxr-xr-x root/root 3622 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcf2sqlite.py
-rwxr-xr-x root/root 34376 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcf2tsv
-rwxr-xr-x root/root 260 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcf_strip_extra_headers
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfaddinfo
-rwxr-xr-x root/root 26120 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfafpath
-rwxr-xr-x root/root 87672 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfallelicprimitives
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfaltcount
-rwxr-xr-x root/root 75352 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfannotate
-rwxr-xr-x root/root 75272 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfannotategenotypes
-rwxr-xr-x root/root 371 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfbiallelic
-rwxr-xr-x root/root 34344 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfbreakmulti
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcat
-rwxr-xr-x root/root 22120 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcheck
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfclassify
-rwxr-xr-x root/root 26120 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcleancomplex
-rwxr-xr-x root/root 221 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfclearid
-rwxr-xr-x root/root 221 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfclearinfo
-rwxr-xr-x root/root 50760 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcombine
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcommonsamples
-rwxr-xr-x root/root 522 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcomplex
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcountalleles
-rwxr-xr-x root/root 46632 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfcreatemulti
-rwxr-xr-x root/root 26120 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfdistance
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfecho
-rwxr-xr-x root/root 34376 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfentropy
-rwxr-xr-x root/root 26248 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfevenregions
-rwxr-xr-x root/root 50904 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcffilter
-rwxr-xr-x root/root 311 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcffirstheader
-rwxr-xr-x root/root 30216 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcffixup
-rwxr-xr-x root/root 38408 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfflatten
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfgeno2alleles
-rwxr-xr-x root/root 75368 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfgeno2haplo
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfgenosamplenames
-rwxr-xr-x root/root 34312 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfgenosummarize
-rwxr-xr-x root/root 58888 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfgenotypecompare
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfgenotypes
-rwxr-xr-x root/root 26184 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfglbound
-rwxr-xr-x root/root 30264 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfglxgt
-rwxr-xr-x root/root 334 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfgtcompare.sh
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfhetcount
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfhethomratio
-rwxr-xr-x root/root 1759 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfindelproximity
-rwxr-xr-x root/root 502 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfindels
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfindex
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfinfo2qual
-rwxr-xr-x root/root 34456 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfinfosummarize
-rwxr-xr-x root/root 83752 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfintersect
-rwxr-xr-x root/root 1157 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfjoincalls
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfkeepgeno
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfkeepinfo
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfkeepsamples
-rwxr-xr-x root/root 50696 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfld
-rwxr-xr-x root/root 54856 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfleftalign
-rwxr-xr-x root/root 26120 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcflength
-rwxr-xr-x root/root 374 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfmultiallelic
-rwxr-xr-x root/root 444 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfmultiway
-rwxr-xr-x root/root 777 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfmultiwayscripts
-rwxr-xr-x root/root 623 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfnobiallelicsnps
-rwxr-xr-x root/root 426 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfnoindels
-rwxr-xr-x root/root 22104 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfnormalizesvs
-rwxr-xr-x root/root 518 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfnosnps
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfnull2ref
-rwxr-xr-x root/root 634 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfnulldotslashdot
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfnumalt
-rwxr-xr-x root/root 30264 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfoverlay
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfparsealts
-rwxr-xr-x root/root 22065 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r
-rwxr-xr-x root/root 179 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh
-rwxr-xr-x root/root 3946 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfplotsitediscrepancy.r
-rwxr-xr-x root/root 171 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfplottstv.sh
-rwxr-xr-x root/root 22088 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfprimers
-rwxr-xr-x root/root 1845 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r
-rwxr-xr-x root/root 518 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfqual2info
-rwxr-xr-x root/root 686 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfqualfilter
-rwxr-xr-x root/root 30216 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfrandom
-rwxr-xr-x root/root 34412 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfrandomsample
-rwxr-xr-x root/root 843 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfregionreduce
-rwxr-xr-x root/root 989 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfregionreduce_and_cut
-rwxr-xr-x root/root 782 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfregionreduce_pipe
-rwxr-xr-x root/root 835 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfregionreduce_uncompressed
-rwxr-xr-x root/root 42696 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfremap
-rwxr-xr-x root/root 26120 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfremoveaberrantgenotypes
-rwxr-xr-x root/root 556 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfremovenonATGC
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfremovesamples
-rwxr-xr-x root/root 79464 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfroc
-rwxr-xr-x root/root 30344 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfsample2info
-rwxr-xr-x root/root 38456 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfsamplediff
-rwxr-xr-x root/root 13832 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfsamplenames
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfsitesummarize
-rwxr-xr-x root/root 521 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfsnps
-rwxr-xr-x root/root 83 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfsort
-rwxr-xr-x root/root 59048 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfstats
-rwxr-xr-x root/root 46664 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfstreamsort
-rwxr-xr-x root/root 17928 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfuniq
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfuniqalleles
-rwxr-xr-x root/root 22024 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfunphase
-rwxr-xr-x root/root 5459 2019-09-06 07:05 ./usr/lib/vcflib/bin/vcfvarstats
-rwxr-xr-x root/root 42504 2019-09-06 07:05 ./usr/lib/vcflib/bin/wcFst
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/libvcflib-tools/
-rw-r--r-- root/root 1412 2019-09-06 07:05 ./usr/share/doc/libvcflib-tools/changelog.Debian.gz
-rw-r--r-- root/root 1887 2019-09-06 07:05 ./usr/share/doc/libvcflib-tools/copyright
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 93 2019-09-06 07:05 ./usr/share/lintian/overrides/libvcflib-tools
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/man/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/man/man1/
-rw-r--r-- root/root 505 2019-09-06 07:05 ./usr/share/man/man1/vcflib.1.gz
libvcflib1-dbgsym_1.0.0+dfsg-2_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 1453228 bytes: control archive=540 bytes.
392 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libvcflib1-dbgsym
Source: libvcflib
Version: 1.0.0+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1510
Depends: libvcflib1 (= 1.0.0+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for libvcflib1
Build-Ids: 07bf8c1ed838a330d8c2f74600cbe051a2c639d4
drwxr-xr-x root/root 0 2019-09-06 07:05 ./
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/debug/.build-id/07/
-rw-r--r-- root/root 1535528 2019-09-06 07:05 ./usr/lib/debug/.build-id/07/bf8c1ed838a330d8c2f74600cbe051a2c639d4.debug
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-09-06 07:05 ./usr/share/doc/libvcflib1-dbgsym -> libvcflib1
libvcflib1_1.0.0+dfsg-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 126576 bytes: control archive=1140 bytes.
1082 bytes, 24 lines control
298 bytes, 4 lines md5sums
39 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libvcflib1
Source: libvcflib
Version: 1.0.0+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 344
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5)
Section: libs
Priority: optional
Homepage: https://github.com/ekg/vcflib
Description: C++ library for parsing and manipulating VCF files
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the defacto
standard reporting format for a wide array of genomic variant detectors.
.
vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:
.
* an API for parsing and operating on records of genomic variation as it can
be described by the VCF format,
* and a collection of command-line utilities for executing complex
manipulations on VCF files.
drwxr-xr-x root/root 0 2019-09-06 07:05 ./
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 334020 2019-09-06 07:05 ./usr/lib/arm-linux-gnueabihf/libvcflib.so.1
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/doc/libvcflib1/
-rw-r--r-- root/root 1412 2019-09-06 07:05 ./usr/share/doc/libvcflib1/changelog.Debian.gz
-rw-r--r-- root/root 1887 2019-09-06 07:05 ./usr/share/doc/libvcflib1/copyright
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/lintian/
drwxr-xr-x root/root 0 2019-09-06 07:05 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 88 2019-09-06 07:05 ./usr/share/lintian/overrides/libvcflib1
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 204456
Build-Time: 1074
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 462
Job: libvcflib_1.0.0+dfsg-2
Machine Architecture: armhf
Package: libvcflib
Package-Time: 1590
Source-Version: 1.0.0+dfsg-2
Space: 204456
Status: successful
Version: 1.0.0+dfsg-2
--------------------------------------------------------------------------------
Finished at 2019-12-15T11:22:05Z
Build needed 00:26:30, 204456k disc space