libssw →
1.1-13 →
armhf → 2021-03-03 06:18:47
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| libssw 1.1-13 (armhf) Wed, 03 Mar 2021 05:42:12 +0000 |
+==============================================================================+
Package: libssw
Version: 1.1-13
Source Version: 1.1-13
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-14f183e2-7a1f-4df2-b7ea-164cf09bb3d5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.2 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.2 MB]
Fetched 25.4 MB in 29s (870 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libssw.git
Please use:
git clone https://salsa.debian.org/med-team/libssw.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.4 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libssw 1.1-13 (dsc) [2369 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libssw 1.1-13 (tar) [12.3 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main libssw 1.1-13 (diff) [54.2 kB]
Fetched 12.4 MB in 4s (2811 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libssw-hbC23V/libssw-1.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libssw-hbC23V' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Tnxf1e/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Tnxf1e/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2888 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 47 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12585 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper
Filtered Build-Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper
dpkg-deb: building package 'sbuild-build-depends-libssw-dummy' in '/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive/sbuild-build-depends-libssw-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libssw-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Sources [565 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ Packages [636 B]
Fetched 2534 B in 1s (3205 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libssw build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libnss-nis libnss-nisplus libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk-headless
default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dwz
file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
help2man intltool-debian java-common javahelper libarchive-zip-perl
libasound2 libasound2-data libavahi-client3 libavahi-common-data
libavahi-common3 libb-hooks-op-check-perl libbrotli1 libbsd0
libclass-method-modifiers-perl libcups2 libdbus-1-3 libdebhelper-perl
libdevel-callchecker-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libexpat1 libfile-dirlist-perl libfile-homedir-perl
libfile-listing-perl libfile-stripnondeterminism-perl libfile-touch-perl
libfile-which-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3
libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu67 libimport-into-perl libio-html-perl
libio-pty-perl libio-socket-ssl-perl libipc-run-perl libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libmd0
libmodule-runtime-perl libmoo-perl libmpdec3 libnet-http-perl
libnet-ssleay-perl libnspr4 libnss3 libparams-classify-perl libpcsclite1
libpipeline1 libpng16-16 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librole-tiny-perl libsigsegv2 libsimde-dev
libstrictures-perl libsub-override-perl libsub-quote-perl libtimedate-perl
libtinfo5 libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxi6 libxml2 libxrender1 libxtst6 m4 man-db maven-repo-helper
media-types openjdk-11-jdk-headless openjdk-11-jre-headless openssl
patchutils perl-openssl-defaults po-debconf python3 python3-minimal
python3.9 python3.9-minimal ucf wdiff x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make default-jre
adequate at autopkgtest bls-standalone bsd-mailx | mailx
check-all-the-things cvs-buildpackage devscripts-el diffoscope disorderfs
dose-extra duck faketime gnuplot how-can-i-help libauthen-sasl-perl
libdbd-pg-perl libfile-desktopentry-perl libnet-smtps-perl libterm-size-perl
libyaml-syck-perl mmdebstrap mozilla-devscripts mutt piuparts
postgresql-client pristine-lfs quilt ratt reprotest ssh-client
svn-buildpackage w3m gettext-doc libasprintf-dev libgettextpo-dev groff
libasound2-plugins alsa-utils cups-common libdata-dump-perl liblcms2-utils
libcrypt-ssleay-perl libscalar-number-perl pcscd
libbareword-filehandles-perl libindirect-perl libmultidimensional-perl
libtool-doc gfortran | fortran95-compiler gcj-jdk libauthen-ntlm-perl m4-doc
apparmor less www-browser maven-debian-helper openjdk-11-demo
openjdk-11-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic
fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic
libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv
python3.9-doc binfmt-support wdiff-doc
Recommended packages:
dput | dupload libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl
liblist-compare-perl libstring-shellquote-perl licensecheck lintian
pristine-tar python3-apt python3-debian python3-magic python3-requests
python3-unidiff python3-xdg strace unzip wget | curl debian-keyring equivs
libsoap-lite-perl curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus
libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
libhtml-format-perl libclone-perl libclass-xsaccessor-perl
libnamespace-clean-perl libsub-name-perl libltdl-dev libdata-dump-perl
libhtml-form-perl libhttp-daemon-perl libmailtools-perl
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates
ca-certificates-java dctrl-tools debhelper default-jdk-headless
default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dwz
file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
help2man intltool-debian java-common javahelper libarchive-zip-perl
libasound2 libasound2-data libavahi-client3 libavahi-common-data
libavahi-common3 libb-hooks-op-check-perl libbrotli1 libbsd0
libclass-method-modifiers-perl libcups2 libdbus-1-3 libdebhelper-perl
libdevel-callchecker-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libexpat1 libfile-dirlist-perl libfile-homedir-perl
libfile-listing-perl libfile-stripnondeterminism-perl libfile-touch-perl
libfile-which-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3
libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
libhttp-negotiate-perl libicu67 libimport-into-perl libio-html-perl
libio-pty-perl libio-socket-ssl-perl libipc-run-perl libjpeg62-turbo
liblcms2-2 liblocale-gettext-perl liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libmd0
libmodule-runtime-perl libmoo-perl libmpdec3 libnet-http-perl
libnet-ssleay-perl libnspr4 libnss3 libparams-classify-perl libpcsclite1
libpipeline1 libpng16-16 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librole-tiny-perl libsigsegv2 libsimde-dev
libstrictures-perl libsub-override-perl libsub-quote-perl libtimedate-perl
libtinfo5 libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl
libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxi6 libxml2 libxrender1 libxtst6 m4 man-db maven-repo-helper
media-types openjdk-11-jdk-headless openjdk-11-jre-headless openssl
patchutils perl-openssl-defaults po-debconf python3 python3-minimal
python3.9 python3.9-minimal sbuild-build-depends-libssw-dummy ucf wdiff
x11-common zlib1g-dev
0 upgraded, 131 newly installed, 0 to remove and 47 not upgraded.
Need to get 244 MB of archives.
After this operation, 453 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Tnxf1e/apt_archive ./ sbuild-build-depends-libssw-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b1 [18.3 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.1-4+rpi1 [790 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.1-4+rpi1 [1625 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.1-1 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmpdec3 armhf 2.5.1-1+rpi1 [73.4 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.1-4+rpi1 [1615 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.1-4+rpi1 [465 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.1-1 [21.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.1-1 [64.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1j-1 [814 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf java-common all 0.72 [14.5 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.8-5 [123 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.8-5 [55.3 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.20-1+b3 [192 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.8-5 [57.9 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.3op2-3 [311 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-2 [120 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libnspr4 armhf 2:4.29-1 [89.9 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libnss3 armhf 2:3.61-1 [1084 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libasound2-data all 1.2.4-1.1 [38.2 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libasound2 armhf 1.2.4-1.1 [303 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.7-1 [1182 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpcsclite1 armhf 1.9.1-1 [57.5 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.7.0-2 [310 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.7.0-2 [706 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.10-1 [77.9 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+22 [252 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jre-headless armhf 11.0.10+9-1 [32.8 MB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf default-jre-headless armhf 2:1.11-72+b4 [11.2 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates-java all 20190909 [15.7 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.3 [189 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210201-1 [164 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.3 [1011 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf openjdk-11-jdk-headless armhf 11.0.10+9-1 [174 MB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf default-jdk-headless armhf 2:1.11-72+b4 [1100 B]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libfile-dirlist-perl all 0.05-2 [7444 B]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libfile-touch-perl all 0.11-1 [9254 B]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libio-pty-perl armhf 1:1.15-2 [36.1 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libipc-run-perl all 20200505.0-1 [102 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libimport-into-perl all 1.002005-1 [11.6 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libstrictures-perl all 2.000006-1 [18.6 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libmoo-perl all 2.004004-1 [59.9 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libfile-listing-perl all 6.14-1 [12.4 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 5.07-1 [90.4 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libhtml-parser-perl armhf 3.75-1+b1 [102 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.28-1 [79.6 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf perl-openssl-defaults armhf 5 [7360 B]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libnet-ssleay-perl armhf 1.88-3+b1 [300 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libio-socket-ssl-perl all 2.069-1 [215 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libnet-http-perl all 6.20-1 [25.1 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libwww-perl all 6.52-1 [192 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf patchutils armhf 0.4.2-1 [68.7 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2+20201114-2 [324 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf wdiff armhf 1.2.2-2 [120 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf devscripts armhf 2.21.1 [1091 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.48.1 [190 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf javahelper all 0.78 [97.2 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libsimde-dev all 0.7.2-4 [259 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf maven-repo-helper all 1.10 [142 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libstrictures-perl (2.000006-1) ...
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Unpacking libmoo-perl (2.004004-1) ...
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Unpacking libtimedate-perl (2.3300-2) ...
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Unpacking libhttp-date-perl (6.05-1) ...
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Unpacking liburi-perl (5.07-1) ...
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Unpacking libhtml-tree-perl (5.07-2) ...
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Unpacking libio-html-perl (1.004-2) ...
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Unpacking libhttp-message-perl (6.28-1) ...
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Unpacking perl-openssl-defaults:armhf (5) ...
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Unpacking libwww-perl (6.52-1) ...
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Unpacking patchutils (0.4.2-1) ...
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Unpacking wdiff (1.2.2-2) ...
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Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libsimde-dev (0.7.2-4) ...
Setting up liblcms2-2:armhf (2.12~rc1-2) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up java-common (0.72) ...
Setting up libicu67:armhf (67.1-6) ...
Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libclass-method-modifiers-perl (2.13-1) ...
Setting up libio-pty-perl (1:1.15-2) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.7-1) ...
No schema files found: doing nothing.
Setting up libhtml-tagset-perl (3.20-4) ...
Setting up libdebhelper-perl (13.3.3) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+22) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libtry-tiny-perl (0.30-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up perl-openssl-defaults:armhf (5) ...
Setting up gettext-base (0.21-4) ...
Setting up libencode-locale-perl (1.05-1.1) ...
Setting up file (1:5.39-3) ...
Setting up libasound2-data (1.2.4-1.1) ...
Setting up patchutils (0.4.2-1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-2) ...
Setting up libx11-data (2:1.7.0-2) ...
Setting up libnspr4:armhf (2:4.29-1) ...
Setting up libavahi-common-data:armhf (0.8-5) ...
Setting up libdbus-1-3:armhf (1.12.20-1+b3) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libio-html-perl (1.004-2) ...
Setting up autopoint (0.21-4) ...
Setting up libb-hooks-op-check-perl (0.22-1+b4) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up libipc-run-perl (20200505.0-1) ...
Setting up libpcsclite1:armhf (1.9.1-1) ...
Setting up ucf (3.0043) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libmd0:armhf (1.0.3-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libasound2:armhf (1.2.4-1.1) ...
Setting up libmpdec3:armhf (2.5.1-1+rpi1) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006006-1) ...
Setting up libfile-dirlist-perl (0.05-2) ...
Setting up libfile-homedir-perl (1.006-1) ...
Setting up openssl (1.1.1j-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libtinfo5:armhf (6.2+20201114-2) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up liburi-perl (5.07-1) ...
Setting up liblocale-gettext-perl (1.07-4+b1) ...
Setting up libfile-touch-perl (0.11-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libpython3.9-stdlib:armhf (3.9.1-4+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.1-1) ...
Setting up libnet-ssleay-perl (1.88-3+b1) ...
Setting up libfile-stripnondeterminism-perl (1.11.0-1) ...
Setting up wdiff (1.2.2-2) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libfile-listing-perl (6.14-1) ...
Setting up libtool (2.4.6-15) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libavahi-common3:armhf (0.8-5) ...
Setting up libnet-http-perl (6.20-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libnss3:armhf (2:3.61-1) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up help2man (1.48.1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.11.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up dwz (0.13+20210201-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up libhtml-parser-perl (3.75-1+b1) ...
Setting up libx11-6:armhf (2:1.7.0-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libavahi-client3:armhf (0.8-5) ...
Setting up libio-socket-ssl-perl (2.069-1) ...
Setting up python3.9 (3.9.1-4+rpi1) ...
Setting up libhttp-message-perl (6.28-1) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.3-1.1) ...
Setting up python3 (3.9.1-1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libcups2:armhf (2.3.3op2-3) ...
Setting up libxi6:armhf (2:1.7.10-1) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libxtst6:armhf (2:1.2.3-1) ...
Setting up libmoo-perl (2.004004-1) ...
Setting up debhelper (13.3.3) ...
Setting up ca-certificates-java (20190909) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EC-ACC.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
done.
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up default-jre-headless (2:1.11-72+b4) ...
Setting up libwww-perl (6.52-1) ...
Setting up maven-repo-helper (1.10) ...
Setting up devscripts (2.21.1) ...
Setting up javahelper (0.78) ...
Processing triggers for libc-bin (2.31-9+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
done.
Setting up openjdk-11-jre-headless:armhf (11.0.10+9-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-11-jdk-headless:armhf (11.0.10+9-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jdk-headless (2:1.11-72+b4) ...
Setting up sbuild-build-depends-libssw-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-7+rpi1 dpkg-dev_1.20.7.1+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-9+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.9-1+rpi1
Package versions: adduser_3.118 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-7+rpi1 binutils-arm-linux-gnueabihf_2.35.1-7+rpi1 binutils-common_2.35.1-7+rpi1 bsdextrautils_2.36.1-6 bsdutils_1:2.36.1-6 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 ca-certificates-java_20190909 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.3.3 debianutils_4.11.2 default-jdk-headless_2:1.11-72+b4 default-jre-headless_2:1.11-72+b4 devscripts_2.21.1 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5 dirmngr_2.2.20-1 dpkg_1.20.7.1+rpi1 dpkg-dev_1.20.7.1+rpi1 dwz_0.13+20210201-1 e2fsprogs_1.45.7-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-6 file_1:5.39-3 findutils_4.8.0-1 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2 help2man_1.48.1 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 java-common_0.72 javahelper_0.78 krb5-locales_1.18.3-4 libacl1_2.2.53-10 libapt-pkg6.0_2.1.18 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libasound2_1.2.4-1.1 libasound2-data_1.2.4-1.1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libavahi-client3_0.8-5 libavahi-common-data_0.8-5 libavahi-common3_0.8-5 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.35.1-7+rpi1 libblkid1_2.36.1-6 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-9+rpi1 libc-dev-bin_2.31-9+rpi1 libc6_2.31-9+rpi1 libc6-dev_2.31-9+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.1-6+rpi1 libclass-method-modifiers-perl_2.13-1 libcom-err2_1.45.7-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-7+rpi1 libctf0_2.35.1-7+rpi1 libcups2_2.3.3op2-3 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.20-1+b3 libdebconfclient0_0.256 libdebhelper-perl_13.3.3 libdevel-callchecker-perl_0.008-1+b2 libdpkg-perl_1.20.7.1+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.183-1 libencode-locale-perl_1.05-1.1 libexpat1_2.2.10-1 libext2fs2_1.45.7-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-6 libffi7_3.3-5 libfile-dirlist-perl_0.05-2 libfile-homedir-perl_1.006-1 libfile-listing-perl_6.14-1 libfile-stripnondeterminism-perl_1.11.0-1 libfile-touch-perl_0.11-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.4+dfsg-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libglib2.0-0_2.66.7-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-4 libharfbuzz0b_2.7.4-1 libhogweed6_3.6-2 libhtml-parser-perl_3.75-1+b1 libhtml-tagset-perl_3.20-4 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.10-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.28-1 libhttp-negotiate-perl_6.01-1 libicu67_67.1-6 libidn2-0_2.3.0-5 libimport-into-perl_1.002005-1 libio-html-perl_1.004-2 libio-pty-perl_1:1.15-2 libio-socket-ssl-perl_2.069-1 libipc-run-perl_20200505.0-1 libisl23_0.23-1 libjpeg62-turbo_1:2.0.5-2 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.57+dfsg-1 libldap-common_2.4.57+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.10-1 liblz4-1_1.9.3-1+rpi1 liblzma5_5.2.5-1.0 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmodule-runtime-perl_0.016-1 libmoo-perl_2.004004-1 libmount1_2.36.1-6 libmpc3_1.2.0-1 libmpdec3_2.5.1-1+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnet-http-perl_6.20-1 libnet-ssleay-perl_1.88-3+b1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnspr4_2:4.29-1 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libnss3_2:3.61-1 libp11-kit0_0.23.22-1 libpam-cap_1:2.44-1 libpam-modules_1.4.0-2 libpam-modules-bin_1.4.0-2 libpam-runtime_1.4.0-2 libpam0g_1.4.0-2 libparams-classify-perl_0.015-1+b3 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libpcsclite1_1.9.1-1 libperl5.32_5.32.1-2 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpython3-stdlib_3.9.1-1 libpython3.9-minimal_3.9.1-4+rpi1 libpython3.9-stdlib_3.9.1-4+rpi1 libreadline8_8.1-1 librole-tiny-perl_2.002004-1 librust-rand-core-dev_0.5.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-4 libsmartcols1_2.36.1-6 libsqlite3-0_3.34.1-1 libss2_1.45.7-1 libssl1.1_1.1.1i-3 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libstrictures-perl_2.000006-1 libsub-override-perl_0.09-2 libsub-quote-perl_2.006006-1 libsystemd0_247.2-5+rpi1 libtasn1-6_4.16.0-2 libtimedate-perl_2.3300-2 libtinfo5_6.2+20201114-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.2-5+rpi1 libunistring2_0.9.10-4 liburi-perl_5.07-1 libuuid1_2.36.1-6 libwww-perl_6.52-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.7.0-2 libx11-data_2:1.7.0-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1.1 libxi6_2:1.7.10-1 libxml2_2.9.10+dfsg-6.3 libxrender1_1:0.9.10-1 libxtst6_2:1.2.3-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.10.9-1+rpi1 login_1:4.8.1-1 logsave_1.45.7-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4 man-db_2.9.4-2 maven-repo-helper_1.10 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.36.1-6 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.2 openjdk-11-jdk-headless_11.0.10+9-1 openjdk-11-jre-headless_11.0.10+9-1 openssl_1.1.1j-1 passwd_1:4.8.1-1 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.32.1-2 perl-base_5.32.1-2 perl-modules-5.32_5.32.1-2 perl-openssl-defaults_5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.1-1 python3-minimal_3.9.1-1 python3.9_3.9.1-4+rpi1 python3.9-minimal_3.9.1-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libssw-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-6 wdiff_1.2.2-2 x11-common_1:7.7+22 xz-utils_5.2.5-1.0 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.YSFkAMmt/trustedkeys.kbx': General error
gpgv: Signature made Sat Feb 20 20:49:39 2021 UTC
gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libssw_1.1-13.dsc
dpkg-source: info: extracting libssw in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libssw_1.1.orig.tar.gz
dpkg-source: info: unpacking libssw_1.1-13.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying build_all_libs.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying rename_tool.patch
dpkg-source: info: applying simde.patch
dpkg-source: info: applying malloc
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-14f183e2-7a1f-4df2-b7ea-164cf09bb3d5
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libssw
dpkg-buildpackage: info: source version 1.1-13
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with javahelper --with jh_maven_repo_helper
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1
dh_auto_clean --sourcedirectory src
cd src && make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f ssw.o ssw_cpp.o ssw-align libssw.so.0 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
jh_clean
mh_clean
dh_clean
debian/rules binary-arch
dh binary-arch --with javahelper --with jh_maven_repo_helper
dh_update_autotools_config -a
dh_autoreconf -a
jh_linkjars -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build --sourcedirectory src -- default java
cd src && make -j4 "INSTALL=install --strip-program=true" default java
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.0 -o libssw.so.0 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -Wl,-z,relro -Wl,-z,now
cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
javac ssw/Aligner.java
javac ssw/Alignment.java
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I"/include" -I"/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -Wl,-z,relro -Wl,-z,now
jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class
added manifest
adding: ssw/Aligner.class(in = 2486) (out= 1520)(deflated 38%)
adding: ssw/Alignment.class(in = 1029) (out= 596)(deflated 42%)
ar rcs libssw.a ssw.o ssw_cpp.o
cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -lm -lz -Wl,-z,relro -Wl,-z,now
g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -lm -lz -Wl,-z,relro -Wl,-z,now
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LD_PRELOAD="$LD_PRELOAD /<<PKGBUILDDIR>>/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa
ERROR: ld.so: object '/<<PKGBUILDDIR>>/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
target_name: chr1
query_name: chr1
optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001
Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60
Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180
Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240
Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300
Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360
Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420
Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480
Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540
Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600
Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660
Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720
Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780
Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840
Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900
Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960
Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001
|||||||||||||||||||||||||||||||||||||||||
Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001
target_name: chr2
query_name: chr1
optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971
Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488
||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| |||
Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56
Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543
|||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**|
Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104
Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599
||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| ||
Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156
Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655
||**||| | ||| || |||| *||| ||*| *|||| |*||*||| ||
Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200
Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707
|||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |*
Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254
Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752
||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*|
Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312
Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806
||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*|
Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363
Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846
| *||*||||||| ||**| | |||||||| |*||| |||
Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417
Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898
||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**|||
Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475
Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949
| |*|| || |*||**| *| || |||**|||*|*|| |||***|*|**
Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526
Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004
*|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *|
Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581
Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063
||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**||
Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627
Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123
*|**|||*|***|||||| |**|*| || || || | ||*||*|*||
Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668
Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173
||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| ||||
Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723
Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221
|| || || |||| || || || |||*|||| |||| |*|| || ||| ||
Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774
Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278
|| || |*|*|*||*||||| | ||*|| || |||*|*|| | || ||
Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816
Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335
|**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||*
Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870
Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392
|*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| ||
Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913
Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450
*|| | ||*||| ||*|*||||||||| || *|||| | *|| *|||
Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954
Target: 4438451 GACACTTCTTTATTATTCAC 4438470
*||||| |*|||*|||||
Query: 955 --TACTTC-TAATTTTTCAC 971
target_name: chr3
query_name: chr1
optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998
Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026
|| |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |*
Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53
Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070
*|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |*
Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111
Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126
|||| ||*||| |*|||**||*| || |||*||**||||| |||| ||
Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157
Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180
|**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| |
Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207
Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233
*||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*||
Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263
Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280
| *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| |
Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318
Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334
*|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***|
Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370
Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386
*||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| |||||
Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426
Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446
||| |*||***||||||**||| || |||| ||*|*| | |*||||*| |
Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469
Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505
***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****||||
Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517
Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547
| |||| | |||| || *| || |||| |||| |*||*|||| *|*
Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571
Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596
*|**||| *||| |||**|*|| ||||*| *|||| |*|*||| |||||
Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625
Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636
||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| ||
Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683
Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690
|||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*||
Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735
Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748
*||*|*|||||| |||| |*| | ||| || |||||**| || *|
Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774
Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803
|*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*|||
Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827
Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861
|||| |*|*|**|*| || |||| ||| || || *|*| || |||| |
Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867
Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914
||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*|
Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916
Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971
|||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*|
Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964
Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002
*|||| |*|||||*||| || |*|||*||*||
Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998
target_name: chr4
query_name: chr1
optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001
Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050
|||||**|| ||*||*|| || | *|*| || ||||||| || || || |
Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50
Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104
||| || |||***||| |||| |||| |||| || ||| ||
Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89
Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159
|| |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| |
Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138
Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219
|| |||| ||||||| || |*|||||*||||*|*||
Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170
Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264
||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*|
Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226
Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312
||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**||
Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284
Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365
| | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*|
Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335
Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419
||*| *||*|||| |||||**|| ||||*|||*|**||||
Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378
Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471
*||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*|
Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434
Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525
| | |**|||| *||*||||||*|*||***||||| |***|||| ||||
Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484
Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575
*|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*||||
Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536
Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620
| *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*|||
Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591
Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669
|| *|||| | || |**|**|| ||*|**| |*||| ||||||*|**|
Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643
Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728
||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| ||||
Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691
Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776
|||||| ||***|| || ||| | *||||*||| |*||**||||**|| ||
Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747
Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836
|||*|*||||*|| |*|*|||| |||*||| ***|||||||| || ||
Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790
Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878
|||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*|
Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848
Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935
|||| || ||*|*|||*|| |*|||||| |||| |**|||||||*|||
Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894
Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993
|| | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*|
Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939
Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048
||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| |
Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986
Target: 48049 GAA---AT--AAAGTA 48059
||| || ||| ||
Query: 987 GAATGGATCCAAA-TA 1001
target_name: chr5
query_name: chr1
optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974
Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863
|||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*|||
Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64
Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911
||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| |
Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955
*|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| *
Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179
Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013
|| |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|*
Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226
Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063
| |*||**|*||||| *||||| *||||| || ||| |**||||| || *||||
Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282
Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109
*|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| ||||
Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335
Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147
|||*||| ||*|| | |||| ||| *||| *||||| |**|||
Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393
Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197
||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*|
Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448
Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229
| |||||| ||||*|| | || | ||| |*||*||| ||
Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507
Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270
|||****| |||| |*|*|***|||*| ||*|*| ||| ||
Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562
Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329
*||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*|
Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615
Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383
*||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*|||
Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673
Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421
| | || |||| ||||| |*|| |||| ||||*||| |||| ||
Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730
Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473
|| ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*|
Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778
Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531
||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 1051.341797 seconds
|| ||*|*||||*||
Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830
Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591
||*|*||||**||||*| || |*|| |||||**||*|| | |||
Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869
Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650
*||| || |||*| || *||**||| || ||| ||*|| | ||| |
Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906
Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706
|||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *||
Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957
Target: 9707 TGTTGATTGTTTC-CTTT 9723
|**|*||| |||| ||||
Query: 958 TTCTAATT-TTTCACTTT 974
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw0.install.in > debian/libssw0.install
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw-dev.install.in > debian/libssw-dev.install
sed -e 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' \
-e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-dev.links.in > debian/libssw-dev.links
sed 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' debian/libssw-java.install.in > debian/libssw-java.install
sed -e 's/@DEB_HOST_MULTIARCH@/arm-linux-gnueabihf/g' \
-e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-java.links.in > debian/libssw-java.links
mv src/ssw.jar src/ssw-1.1.jar
dh_auto_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
jh_installjavadoc -a
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \
-I debian/extra-man-info.txt \
-N -n 'fast Smith-Waterman aligner' \
--no-discard-stderr src/ssw-align \
| fgrep -v ERROR > debian/ssw-align.1
dh_installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
jh_installlibs -a
jh_classpath -a
jh_manifest -a
jh_exec -a
jh_depends -a
mh_installpoms -a
mh_linkjars --skip-clean-poms -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ssw-align/usr/bin/ssw-align was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libssw0' in '../libssw0_1.1-13_armhf.deb'.
dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.1-13_armhf.deb'.
dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-13_armhf.deb'.
dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.1-13_armhf.deb'.
dpkg-deb: building package 'ssw-align' in '../ssw-align_1.1-13_armhf.deb'.
dpkg-deb: building package 'libssw0-dbgsym' in '../libssw0-dbgsym_1.1-13_armhf.deb'.
dpkg-deb: building package 'libssw-java' in '../libssw-java_1.1-13_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../libssw_1.1-13_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-03-03T06:18:38Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libssw_1.1-13_armhf.changes:
----------------------------
Format: 1.8
Date: Sat, 20 Feb 2021 21:21:08 +0100
Source: libssw
Binary: libssw-dev libssw-java libssw-java-dbgsym libssw0 libssw0-dbgsym ssw-align ssw-align-dbgsym
Architecture: armhf
Version: 1.1-13
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
libssw-dev - Development headers and static libraries for libssw
libssw-java - Java bindings for libssw
libssw0 - fast SIMD parallelized implementation of the Smith-Waterman algor
ssw-align - Smith-Waterman aligner based on libssw
Closes: 982045
Changes:
libssw (1.1-13) unstable; urgency=medium
.
* Do not hardcode source/target version levels into javac call.
Closes: #982045
* Bump Standards-Version.
* Use watchfile version 4.
Checksums-Sha1:
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f29f83cbed04db80f4f17cedd611bffa97e0fd28 10231 libssw_1.1-13_armhf.buildinfo
0200572258fc2d685b40f612f314e9f5eb65ab0e 58624 ssw-align-dbgsym_1.1-13_armhf.deb
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Checksums-Sha256:
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a6b66024a69bbead72877cf30e36e7eb482a335d227b2aae1925a97c10d1b316 22272 ssw-align_1.1-13_armhf.deb
Files:
9b7e9d4ccc5857d2940f1b2027ce1a4a 23968 libdevel optional libssw-dev_1.1-13_armhf.deb
21838666833a513621e3ee6fdca5b04e 47444 debug optional libssw-java-dbgsym_1.1-13_armhf.deb
b4de557741ab3a2b255421b65947d18f 19180 java optional libssw-java_1.1-13_armhf.deb
fdb960bf68cfe1d3baf42c413935c40d 100604 debug optional libssw0-dbgsym_1.1-13_armhf.deb
191e6dab26e98dbe88e4c3a940fa030f 20964 libs optional libssw0_1.1-13_armhf.deb
58e2705ff408cb93de768cc6ba777f8e 10231 science optional libssw_1.1-13_armhf.buildinfo
84350db80ed07416c4540e24a4598d80 58624 debug optional ssw-align-dbgsym_1.1-13_armhf.deb
3ed03f4fad78c37acabf006d7441b2e3 22272 science optional ssw-align_1.1-13_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libssw-dev_1.1-13_armhf.deb
---------------------------
new Debian package, version 2.0.
size 23968 bytes: control archive=832 bytes.
667 bytes, 17 lines control
327 bytes, 5 lines md5sums
Package: libssw-dev
Source: libssw
Version: 1.1-13
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 76
Depends: libssw0 (= 1.1-13)
Provides: libssw-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Development headers and static libraries for libssw
This package provides development headers and static libraries for libssw,
a fast implementation of the Smith-Waterman algorithm using
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level.
drwxr-xr-x root/root 0 2021-02-20 20:21 ./
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/include/
-rw-r--r-- root/root 8517 2021-02-20 20:21 ./usr/include/ssw.h
-rw-r--r-- root/root 8041 2016-08-19 19:30 ./usr/include/ssw_cpp.h
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 45636 2021-02-20 20:21 ./usr/lib/arm-linux-gnueabihf/libssw.a
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/lib/arm-linux-gnueabihf/libssw.so -> libssw.so.0
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/libssw-dev/
-rw-r--r-- root/root 1726 2021-02-20 20:21 ./usr/share/doc/libssw-dev/changelog.Debian.gz
-rw-r--r-- root/root 1619 2021-02-20 20:11 ./usr/share/doc/libssw-dev/copyright
libssw-java-dbgsym_1.1-13_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 47444 bytes: control archive=536 bytes.
378 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libssw-java-dbgsym
Source: libssw
Version: 1.1-13
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 59
Depends: libssw-java (= 1.1-13)
Section: debug
Priority: optional
Description: debug symbols for libssw-java
Build-Ids: 33fe8be77772b5f60b1404e89cfc5c98d6b9a475
drwxr-xr-x root/root 0 2021-02-20 20:21 ./
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/.build-id/33/
-rw-r--r-- root/root 49408 2021-02-20 20:21 ./usr/lib/debug/.build-id/33/fe8be77772b5f60b1404e89cfc5c98d6b9a475.debug
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/share/doc/libssw-java-dbgsym -> libssw-java
libssw-java_1.1-13_armhf.deb
----------------------------
new Debian package, version 2.0.
size 19180 bytes: control archive=844 bytes.
578 bytes, 15 lines control
434 bytes, 6 lines md5sums
Package: libssw-java
Source: libssw
Version: 1.1-13
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 56
Depends: libc6 (>= 2.4)
Section: java
Priority: optional
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Java bindings for libssw
This package provides JNI based Java bindings for libssw, a fast
implementation of the Smith-Waterman algorithm using Single-Instruction
Multiple-Data (SIMD) instructions to parallelize the algorithm at the
instruction level.
drwxr-xr-x root/root 0 2021-02-20 20:21 ./
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/jni/
-rw-r--r-- root/root 29956 2021-02-20 20:21 ./usr/lib/jni/libsswjni.so
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/libssw-java/
-rw-r--r-- root/root 1726 2021-02-20 20:21 ./usr/share/doc/libssw-java/changelog.Debian.gz
-rw-r--r-- root/root 1619 2021-02-20 20:11 ./usr/share/doc/libssw-java/copyright
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/java/
-rw-r--r-- root/root 2684 2021-02-20 20:21 ./usr/share/java/ssw-1.1.jar
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/share/java/ssw.jar -> ssw-1.1.jar
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/maven-repo/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/maven-repo/ssw/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/maven-repo/ssw/ssw/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/maven-repo/ssw/ssw/1.0/
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/share/maven-repo/ssw/ssw/1.0/ssw-1.0.jar -> ../../../../java/ssw.jar
-rw-r--r-- root/root 535 2021-02-20 20:21 ./usr/share/maven-repo/ssw/ssw/1.0/ssw-1.0.pom
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/maven-repo/ssw/ssw/debian/
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/share/maven-repo/ssw/ssw/debian/ssw-debian.jar -> ../../../../java/ssw.jar
-rw-r--r-- root/root 538 2021-02-20 20:21 ./usr/share/maven-repo/ssw/ssw/debian/ssw-debian.pom
libssw0-dbgsym_1.1-13_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 100604 bytes: control archive=544 bytes.
384 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libssw0-dbgsym
Source: libssw
Version: 1.1-13
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 113
Depends: libssw0 (= 1.1-13)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libssw0
Build-Ids: 29b7c0ce54855b8a820ae983ea4bd37bc0d03014
drwxr-xr-x root/root 0 2021-02-20 20:21 ./
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/.build-id/29/
-rw-r--r-- root/root 105216 2021-02-20 20:21 ./usr/lib/debug/.build-id/29/b7c0ce54855b8a820ae983ea4bd37bc0d03014.debug
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/share/doc/libssw0-dbgsym -> libssw0
libssw0_1.1-13_armhf.deb
------------------------
new Debian package, version 2.0.
size 20964 bytes: control archive=1568 bytes.
1098 bytes, 21 lines control
286 bytes, 4 lines md5sums
26 bytes, 1 lines shlibs
1754 bytes, 33 lines symbols
67 bytes, 2 lines triggers
Package: libssw0
Source: libssw
Version: 1.1-13
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 59
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2), zlib1g
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: fast SIMD parallelized implementation of the Smith-Waterman algorithm
SSW is a fast implementation of the Smith-Waterman algorithm, which uses the
Single-Instruction Multiple-Data (SIMD) instructions to parallelize the
algorithm at the instruction level. SSW library provides an API that can be
flexibly used by programs written in C, C++ and other languages. The library
can do protein and genome alignment directly.
Current version of this implementation is ~50 times faster than an ordinary
Smith-Waterman. It can return the Smith-Waterman score, alignment location
and traceback path (cigar) of the optimal alignment accurately; and return
the sub-optimal alignment score and location heuristically.
drwxr-xr-x root/root 0 2021-02-20 20:21 ./
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 42344 2021-02-20 20:21 ./usr/lib/arm-linux-gnueabihf/libssw.so.0
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/libssw0/
-rw-r--r-- root/root 260 2021-02-20 20:11 ./usr/share/doc/libssw0/README.Debian
-rw-r--r-- root/root 1726 2021-02-20 20:21 ./usr/share/doc/libssw0/changelog.Debian.gz
-rw-r--r-- root/root 1619 2021-02-20 20:11 ./usr/share/doc/libssw0/copyright
ssw-align-dbgsym_1.1-13_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 58624 bytes: control archive=540 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: ssw-align-dbgsym
Source: libssw
Version: 1.1-13
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 71
Depends: ssw-align (= 1.1-13)
Section: debug
Priority: optional
Description: debug symbols for ssw-align
Build-Ids: 49adf8fe79cb49b1a004f741b89e824bff834c6b
drwxr-xr-x root/root 0 2021-02-20 20:21 ./
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/lib/debug/.build-id/49/
-rw-r--r-- root/root 61848 2021-02-20 20:21 ./usr/lib/debug/.build-id/49/adf8fe79cb49b1a004f741b89e824bff834c6b.debug
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/share/doc/ssw-align-dbgsym -> ssw-align
ssw-align_1.1-13_armhf.deb
--------------------------
new Debian package, version 2.0.
size 22272 bytes: control archive=892 bytes.
806 bytes, 17 lines control
266 bytes, 4 lines md5sums
Package: ssw-align
Source: libssw
Version: 1.1-13
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 58
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4), libssw0 (= 1.1-13)
Section: science
Priority: optional
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Description: Smith-Waterman aligner based on libssw
This package provides a command-line aligner based on the libssw library,
a fast SIMD accelerated implementation of the Smith-Waterman algorithm.
The input files can be in FASTA or FASTQ format. Both target and query files
can contain multiple sequences. Each sequence in the query file will be
aligned with all sequences in the target file. Output is provided in SAM or
BLAST-like text format.
drwxr-xr-x root/root 0 2021-02-20 20:21 ./
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/bin/
-rwxr-xr-x root/root 42452 2021-02-20 20:21 ./usr/bin/ssw-align
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/bin/ssw_test -> ssw-align
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/doc/ssw-align/
-rw-r--r-- root/root 1726 2021-02-20 20:21 ./usr/share/doc/ssw-align/changelog.Debian.gz
-rw-r--r-- root/root 1619 2021-02-20 20:11 ./usr/share/doc/ssw-align/copyright
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/man/
drwxr-xr-x root/root 0 2021-02-20 20:21 ./usr/share/man/man1/
-rw-r--r-- root/root 934 2021-02-20 20:21 ./usr/share/man/man1/ssw-align.1.gz
lrwxrwxrwx root/root 0 2021-02-20 20:21 ./usr/share/man/man1/ssw_test.1.gz -> ssw-align.1.gz
+------------------------------------------------------------------------------+
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| Cleanup |
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Purging /<<BUILDDIR>>
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 31684
Build-Time: 1187
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 939
Job: libssw_1.1-13
Machine Architecture: armhf
Package: libssw
Package-Time: 2186
Source-Version: 1.1-13
Space: 31684
Status: successful
Version: 1.1-13
--------------------------------------------------------------------------------
Finished at 2021-03-03T06:18:38Z
Build needed 00:36:26, 31684k disc space