libgclib →
0.11.3-1 →
armhf → 2019-11-09 06:02:07
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| libgclib 0.11.3-1 (armhf) Sat, 09 Nov 2019 05:52:18 +0000 |
+==============================================================================+
Package: libgclib
Version: 0.11.3-1
Source Version: 0.11.3-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-56526cbb-b987-4104-9d29-5ac002702c22' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 27s (919 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libgclib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/libgclib.git
Please use:
git clone https://salsa.debian.org/med-team/libgclib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 204 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main libgclib 0.11.3-1 (dsc) [2130 B]
Get:2 http://172.17.0.1/private bullseye-staging/main libgclib 0.11.3-1 (tar) [189 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main libgclib 0.11.3-1 (diff) [13.2 kB]
Fetched 204 kB in 0s (835 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libgclib-6GLrOb/libgclib-0.11.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libgclib-6GLrOb' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-XjdNRU/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-XjdNRU/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-XjdNRU/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Packages [433 B]
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Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-XjdNRU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), d-shlibs
Filtered Build-Depends: debhelper-compat (= 12), d-shlibs
dpkg-deb: building package 'sbuild-build-depends-libgclib-dummy' in '/<<BUILDDIR>>/resolver-XjdNRU/apt_archive/sbuild-build-depends-libgclib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libgclib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Sources [498 B]
Get:5 copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Packages [581 B]
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Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-XjdNRU/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-XjdNRU/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install libgclib build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libicu63 libmagic-mgc libmagic1 libncurses6 libncursesw6 libpipeline1
libsigsegv2 libsub-override-perl libtinfo5 libtinfo6 libtool libuchardet0
libxml2 m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libicu63 libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
po-debconf sbuild-build-depends-libgclib-dummy sensible-utils
The following packages will be upgraded:
libncursesw6 libtinfo6
2 upgraded, 38 newly installed, 0 to remove and 32 not upgraded.
Need to get 19.1 MB of archives.
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Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-1 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.1+20191019-1 [320 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.1+20191019-1 [104 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
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Get:14 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.88 [17.4 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.1-1 [23.5 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.1-1 [14.4 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.1 [173 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.2-3 [1137 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.1 [997 kB]
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Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up man-db (2.9.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.1) ...
Setting up sbuild-build-depends-libgclib-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (1.6.1-1) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.32.51.20190909-1+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-8+rpi1 gcc-9_9.2.1-8+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1+rpi1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1+rpi1 binutils-common_2.32.51.20190909-1+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-8+rpi1 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.1-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-8+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-14 gcc-9_9.2.1-8+rpi1 gcc-9-base_9.2.1-8+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.22 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-8+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-8+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1+rpi1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 libc6-dev_2.29-2+rpi1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcap2-bin_1:2.25-2 libcc1-0_9.2.1-8+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.7.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.1-1 libgcc-9-dev_9.2.1-8+rpi1 libgcc1_1:9.2.1-8+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8+rpi1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b1 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.1-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.17-2 libpam-cap_1:2.25-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libperl5.30_5.30.0-7 libpipeline1_1.5.1-2 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libtasn1-6_4.14-3 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-8+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-7 perl-base_5.30.0-7 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-7 pinentry-curses_1.1.0-3 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libgclib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-3 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 7 12:36:06 2019 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libgclib_0.11.3-1.dsc
dpkg-source: info: extracting libgclib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libgclib_0.11.3.orig.tar.gz
dpkg-source: info: unpacking libgclib_0.11.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying autoconf.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-56526cbb-b987-4104-9d29-5ac002702c22
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c190897
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libgclib
dpkg-buildpackage: info: source version 0.11.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config': No such file or directory
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'.
libtoolize: copying file 'config/libtool.m4'
libtoolize: copying file 'config/ltoptions.m4'
libtoolize: copying file 'config/ltsugar.m4'
libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:30: installing 'config/compile'
configure.ac:30: installing 'config/config.guess'
configure.ac:30: installing 'config/config.sub'
configure.ac:18: installing 'config/install-sh'
configure.ac:18: installing 'config/missing'
Makefile.am: installing 'config/depcomp'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '112' is supported by ustar format... yes
checking whether GID '116' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether ln -s works... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
./configure: line 11515: AX_CXXFLAGS: command not found
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libgclib.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-am
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o mdtest.o mdtest.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-codons.lo `test -f 'codons.cpp' || echo './'`codons.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GAlnExtend.lo `test -f 'GAlnExtend.cpp' || echo './'`GAlnExtend.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GapAssem.lo `test -f 'GapAssem.cpp' || echo './'`GapAssem.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c codons.cpp -fPIC -DPIC -o .libs/libgclib_la-codons.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GAlnExtend.cpp -fPIC -DPIC -o .libs/libgclib_la-GAlnExtend.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GapAssem.cpp -fPIC -DPIC -o .libs/libgclib_la-GapAssem.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GArgs.lo `test -f 'GArgs.cpp' || echo './'`GArgs.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c codons.cpp -o libgclib_la-codons.o >/dev/null 2>&1
GAlnExtend.cpp:21:2: warning: extra ‘;’ [-Wpedantic]
21 | };
| ^
GAlnExtend.cpp:27:2: warning: extra ‘;’ [-Wpedantic]
27 | };
| ^
GAlnExtend.cpp:39:2: warning: extra ‘;’ [-Wpedantic]
39 | };
| ^
GAlnExtend.cpp:45:2: warning: extra ‘;’ [-Wpedantic]
45 | };
| ^
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GArgs.cpp -fPIC -DPIC -o .libs/libgclib_la-GArgs.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GBase.lo `test -f 'GBase.cpp' || echo './'`GBase.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GBase.cpp -fPIC -DPIC -o .libs/libgclib_la-GBase.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GArgs.cpp -o libgclib_la-GArgs.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GAlnExtend.cpp -o libgclib_la-GAlnExtend.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GapAssem.cpp -o libgclib_la-GapAssem.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-gcdb.lo `test -f 'gcdb.cpp' || echo './'`gcdb.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gcdb.cpp -fPIC -DPIC -o .libs/libgclib_la-gcdb.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GBase.cpp -o libgclib_la-GBase.o >/dev/null 2>&1
gcdb.cpp: In constructor ‘GCdbRead::GCdbRead(int)’:
gcdb.cpp:806:20: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare]
806 | if (st.st_size <= MAX_UINT) {
gcdb.cpp: In constructor ‘GCdbRead::GCdbRead(char*)’:
gcdb.cpp:840:20: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare]
840 | if (st.st_size <= MAX_UINT) {
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gcdb.cpp -o libgclib_la-gcdb.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GCdbYank.lo `test -f 'GCdbYank.cpp' || echo './'`GCdbYank.cpp
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-gdna.lo `test -f 'gdna.cpp' || echo './'`gdna.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GCdbYank.cpp -fPIC -DPIC -o .libs/libgclib_la-GCdbYank.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gdna.cpp -fPIC -DPIC -o .libs/libgclib_la-gdna.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GFaSeqGet.lo `test -f 'GFaSeqGet.cpp' || echo './'`GFaSeqGet.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GFaSeqGet.cpp -fPIC -DPIC -o .libs/libgclib_la-GFaSeqGet.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gdna.cpp -o libgclib_la-gdna.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GFastaIndex.lo `test -f 'GFastaIndex.cpp' || echo './'`GFastaIndex.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GCdbYank.cpp -o libgclib_la-GCdbYank.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GFastaIndex.cpp -fPIC -DPIC -o .libs/libgclib_la-GFastaIndex.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-gff.lo `test -f 'gff.cpp' || echo './'`gff.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gff.cpp -fPIC -DPIC -o .libs/libgclib_la-gff.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GFaSeqGet.cpp -o libgclib_la-GFaSeqGet.o >/dev/null 2>&1
GFastaIndex.cpp: In member function ‘int GFastaIndex::loadIndex(const char*)’:
GFastaIndex.cpp:55:22: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘uint*’ {aka ‘unsigned int*’} [-Wformat=]
55 | sscanf(p, "%d%lld%d%d", &len, &offset, &line_len, &line_blen);
| ~^ ~~~~
| | |
| int* uint* {aka unsigned int*}
| %d
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-gsocket.lo `test -f 'gsocket.cpp' || echo './'`gsocket.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GFastaIndex.cpp -o libgclib_la-GFastaIndex.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gsocket.cpp -fPIC -DPIC -o .libs/libgclib_la-gsocket.o
In file included from gff.cpp:1:
gff.h:228:6: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
228 | };
| ^
gff.h:239:6: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
239 | };
| ^
gff.h:328:5: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
328 | };
| ^
gff.h:708:7: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
708 | };
| ^
gff.h:1166:5: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
1166 | };
| ^
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-gstopwatch.lo `test -f 'gstopwatch.cpp' || echo './'`gstopwatch.cpp
In file included from GList.hh:8,
from GFastaIndex.h:12,
from GFaSeqGet.h:3,
from gff.h:9,
from gff.cpp:1:
GVec.hh: In instantiation of ‘void GVec<OBJ>::Grow(int, OBJ&) [with OBJ = GffObj::processGeneSegments(GffReader*)::GSegMatch]’:
GVec.hh:430:5: required from ‘void GVec<OBJ>::Insert(int, OBJ*) [with OBJ = GffObj::processGeneSegments(GffReader*)::GSegMatch]’
GVec.hh:69:38: required from ‘void GVec<OBJ>::Insert(int, OBJ) [with OBJ = GffObj::processGeneSegments(GffReader*)::GSegMatch]’
GList.hh:231:21: required from ‘int GArray<OBJ>::Add(OBJ*) [with OBJ = GffObj::processGeneSegments(GffReader*)::GSegMatch]’
GList.hh:51:42: required from ‘int GArray<OBJ>::Add(OBJ&) [with OBJ = GffObj::processGeneSegments(GffReader*)::GSegMatch]’
gff.cpp:2005:23: required from here
GVec.hh:358:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GffObj::processGeneSegments(GffReader*)::GSegMatch’; use assignment or value-initialization instead [-Wclass-memaccess]
358 | memset(&newList[fCount+1], 0, (NewCapacity-fCount-1)*sizeof(OBJ));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gff.cpp:1971:8: note: ‘class GffObj::processGeneSegments(GffReader*)::GSegMatch’ declared here
1971 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers
| ^~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gstopwatch.cpp -fPIC -DPIC -o .libs/libgclib_la-gstopwatch.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GStr.lo `test -f 'GStr.cpp' || echo './'`GStr.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gsocket.cpp -o libgclib_la-gsocket.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GStr.cpp -fPIC -DPIC -o .libs/libgclib_la-GStr.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gstopwatch.cpp -o libgclib_la-gstopwatch.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c -o libgclib_la-GThreads.lo `test -f 'GThreads.cpp' || echo './'`GThreads.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GThreads.cpp -fPIC -DPIC -o .libs/libgclib_la-GThreads.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GThreads.cpp -o libgclib_la-GThreads.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c GStr.cpp -o libgclib_la-GStr.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -c gff.cpp -o libgclib_la-gff.o >/dev/null 2>&1
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -version-info 0:1 -lpthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-flto -o libgclib.la -rpath /usr/lib/arm-linux-gnueabihf libgclib_la-codons.lo libgclib_la-GAlnExtend.lo libgclib_la-GapAssem.lo libgclib_la-GArgs.lo libgclib_la-GBase.lo libgclib_la-gcdb.lo libgclib_la-GCdbYank.lo libgclib_la-gdna.lo libgclib_la-GFaSeqGet.lo libgclib_la-GFastaIndex.lo libgclib_la-gff.lo libgclib_la-gsocket.lo libgclib_la-gstopwatch.lo libgclib_la-GStr.lo libgclib_la-GThreads.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/9/crtbeginS.o .libs/libgclib_la-codons.o .libs/libgclib_la-GAlnExtend.o .libs/libgclib_la-GapAssem.o .libs/libgclib_la-GArgs.o .libs/libgclib_la-GBase.o .libs/libgclib_la-gcdb.o .libs/libgclib_la-GCdbYank.o .libs/libgclib_la-gdna.o .libs/libgclib_la-GFaSeqGet.o .libs/libgclib_la-GFastaIndex.o .libs/libgclib_la-gff.o .libs/libgclib_la-gsocket.o .libs/libgclib_la-gstopwatch.o .libs/libgclib_la-GStr.o .libs/libgclib_la-GThreads.o -lpthread -L/usr/lib/gcc/arm-linux-gnueabihf/9 -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/9/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/9/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -flto -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -Wl,-flto -Wl,-soname -Wl,libgclib.so.0 -o .libs/libgclib.so.0.0.1
GVec.hh: In member function 'setCapacity':
GVec.hh:295:10: warning: argument 1 value '4294967295' exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
295 | fArray=new OBJ[NewCapacity];
| ^
GVec.hh:295:10: note: in a call to built-in allocation function 'operator new []'
libtool: link: (cd ".libs" && rm -f "libgclib.so.0" && ln -s "libgclib.so.0.0.1" "libgclib.so.0")
libtool: link: (cd ".libs" && rm -f "libgclib.so" && ln -s "libgclib.so.0.0.1" "libgclib.so")
libtool: link: ar cru .libs/libgclib.a libgclib_la-codons.o libgclib_la-GAlnExtend.o libgclib_la-GapAssem.o libgclib_la-GArgs.o libgclib_la-GBase.o libgclib_la-gcdb.o libgclib_la-GCdbYank.o libgclib_la-gdna.o libgclib_la-GFaSeqGet.o libgclib_la-GFastaIndex.o libgclib_la-gff.o libgclib_la-gsocket.o libgclib_la-gstopwatch.o libgclib_la-GStr.o libgclib_la-GThreads.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgclib.a
libtool: link: ( cd ".libs" && rm -f "libgclib.la" && ln -s "../libgclib.la" "libgclib.la" )
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-flto -o mdtest mdtest.o libgclib.la
libtool: link: g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -fPIC -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -Wl,-flto -o .libs/mdtest mdtest.o ./.libs/libgclib.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
./mdtest 7TEST^BCT
7 matching bases
base mismatch [T]
base mismatch [E]
base mismatch [S]
base mismatch [T]
3 base(s) deletion [BCT]
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ./libtool --mode=install /usr/bin/install -c libgclib.la '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libgclib.so.0.0.1 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.so.0.0.1
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libgclib.so.0.0.1 libgclib.so.0 || { rm -f libgclib.so.0 && ln -s libgclib.so.0.0.1 libgclib.so.0; }; })
libtool: install: (cd /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libgclib.so.0.0.1 libgclib.so || { rm -f libgclib.so && ln -s libgclib.so.0.0.1 libgclib.so; }; })
libtool: install: /usr/bin/install -c .libs/libgclib.lai /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.la
libtool: install: /usr/bin/install -c .libs/libgclib.a /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.a
libtool: install: chmod 644 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.a
libtool: install: ranlib /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.a
libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c mdtest '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: 'libgclib.la' has not been installed in '/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/mdtest /<<PKGBUILDDIR>>/debian/tmp/usr/bin/mdtest
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/include'
/usr/bin/install -c -m 644 GAlnExtend.h GArgs.h GBam.h GBase.h GBitVec.h GCdbYank.h GFaSeqGet.h GFastaFile.h GFastaIndex.h GStr.h GThreads.h GapAssem.h codons.h config.h gcdb.h gdimg.h gdna.h gff.h gsocket.h gstopwatch.h proc_mem.h GHash.hh GIntHash.hh GList.hh GVec.hh '/<<PKGBUILDDIR>>/debian/tmp/usr/include'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
/usr/bin/install -c -m 644 libgclib.pc '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include usr \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libgclib-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libgclib0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.a debian/libgclib-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.so debian/libgclib-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.so.0 debian/libgclib0/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libgclib.so.0.0.1 debian/libgclib0/usr/lib/arm-linux-gnueabihf
PKGDEV=libgclib-dev
PKGSHL=libgclib0
install -d -m 755 debian/libgclib-dev/usr
mv debian/tmp/usr/include debian/libgclib-dev/usr
install -d -m 755 debian/libgclib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgclib-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mkdir debian/libgclib-dev/usr/include/gclib
mv debian/libgclib-dev/usr/include/*.h* debian/libgclib-dev/usr/include/gclib
# delete header files of not compiled C++ source files
find debian/libgclib-dev -name gdimg.h -delete
find debian/libgclib-dev -name GBam.h -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
chmod a-x debian/libgclib-dev/usr/share/doc/libgclib-dev/examples/*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_missing: usr/lib/arm-linux-gnueabihf/libgclib.la exists in debian/tmp but is not installed to anywhere
dh_missing: usr/bin/mdtest exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libgclib-dev (0), libgclib0 (0)
* dh_installdocs: libgclib-dev (0), libgclib0 (0)
* dh_installexamples: libgclib-dev (1), libgclib0 (0)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
dh_dwz -a
dh_strip -a
strip: debian/libgclib-dev/usr/lib/arm-linux-gnueabihf/stcCOMIP/libgclib_la-codons.o: plugin needed to handle lto object
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libgclib0/usr/lib/arm-linux-gnueabihf/libgclib.so.0.0.1 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libgclib-dev' in '../libgclib-dev_0.11.3-1_armhf.deb'.
dpkg-deb: building package 'libgclib0' in '../libgclib0_0.11.3-1_armhf.deb'.
dpkg-deb: building package 'libgclib0-dbgsym' in '../libgclib0-dbgsym_0.11.3-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../libgclib_0.11.3-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-11-09T06:01:28Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libgclib_0.11.3-1_armhf.changes:
--------------------------------
Format: 1.8
Date: Thu, 07 Nov 2019 13:35:50 +0100
Source: libgclib
Binary: libgclib-dev libgclib0 libgclib0-dbgsym
Architecture: armhf
Version: 0.11.3-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
libgclib-dev - header files for Genome Code Lib (GCLib)
libgclib0 - C++ library to handle biological short sequence data
Changes:
libgclib (0.11.3-1) unstable; urgency=medium
.
* New upstream version
* Set upstream metadata fields: Repository.
* Remove obsolete fields Name from debian/upstream/metadata.
* Add new symbols
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Files:
d4ea5b341d47d3961e7701fcbd555e38 2319116 libdevel optional libgclib-dev_0.11.3-1_armhf.deb
2ae3be44523b48cf6e244570a90cb00f 470096 debug optional libgclib0-dbgsym_0.11.3-1_armhf.deb
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libgclib
Binary: libgclib-dev libgclib0
Architecture: armhf
Version: 0.11.3-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 09 Nov 2019 06:01:26 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
adduser (= 3.118),
apt (= 1.8.4),
autoconf (= 2.69-11),
automake (= 1:1.16.1-4),
autopoint (= 0.19.8.1-9),
autotools-dev (= 20180224.1),
base-files (= 11+rpi1),
base-passwd (= 3.5.46),
bash (= 5.0-4),
binutils (= 2.32.51.20190909-1+rpi1),
binutils-arm-linux-gnueabihf (= 2.32.51.20190909-1+rpi1),
binutils-common (= 2.32.51.20190909-1+rpi1),
bsdmainutils (= 11.1.2),
bsdutils (= 1:2.34-0.1),
build-essential (= 12.8),
bzip2 (= 1.0.8-2),
coreutils (= 8.30-3),
cpp (= 4:9.2.1-3+rpi1),
cpp-9 (= 9.2.1-8+rpi1),
d-shlibs (= 0.88),
dash (= 0.5.10.2-6),
debconf (= 1.5.73),
debhelper (= 12.7.1),
debianutils (= 4.9),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.6.1-1),
diffutils (= 1:3.7-3),
dirmngr (= 2.2.17-3+b1),
dpkg (= 1.19.7),
dpkg-dev (= 1.19.7),
dwz (= 0.13-1),
fdisk (= 2.34-0.1),
file (= 1:5.37-6),
findutils (= 4.7.0-1),
g++ (= 4:9.2.1-3+rpi1),
g++-9 (= 9.2.1-8+rpi1),
gcc (= 4:9.2.1-3+rpi1),
gcc-9 (= 9.2.1-8+rpi1),
gcc-9-base (= 9.2.1-8+rpi1),
gettext (= 0.19.8.1-9),
gettext-base (= 0.19.8.1-9),
gnupg (= 2.2.17-3),
gnupg-l10n (= 2.2.17-3),
gnupg-utils (= 2.2.17-3+b1),
gpg (= 2.2.17-3+b1),
gpg-agent (= 2.2.17-3+b1),
gpg-wks-client (= 2.2.17-3+b1),
gpg-wks-server (= 2.2.17-3+b1),
gpgconf (= 2.2.17-3+b1),
gpgsm (= 2.2.17-3+b1),
gpgv (= 2.2.17-3+b1),
grep (= 3.3-1),
groff-base (= 1.22.4-3),
gzip (= 1.9-3),
hostname (= 3.22),
init-system-helpers (= 1.57),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-5),
libapt-pkg5.0 (= 1.8.4),
libarchive-zip-perl (= 1.67-1),
libasan5 (= 9.2.1-8+rpi1),
libassuan0 (= 2.5.3-7),
libatomic1 (= 9.2.1-8+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-2),
libaudit1 (= 1:2.8.5-2),
libbinutils (= 2.32.51.20190909-1+rpi1),
libblkid1 (= 2.34-0.1),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.8-2),
libc-bin (= 2.29-2+rpi1),
libc-dev-bin (= 2.29-2+rpi1),
libc6 (= 2.29-2+rpi1),
libc6-dev (= 2.29-2+rpi1),
libcap-ng0 (= 0.7.9-2),
libcc1-0 (= 9.2.1-8+rpi1),
libcroco3 (= 0.6.13-1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.249),
libdebhelper-perl (= 12.7.1),
libdpkg-perl (= 1.19.7),
libelf1 (= 0.176-1.1),
libfdisk1 (= 2.34-0.1),
libffi6 (= 3.2.1-9),
libfile-stripnondeterminism-perl (= 1.6.1-1),
libgcc-9-dev (= 9.2.1-8+rpi1),
libgcc1 (= 1:9.2.1-8+rpi1),
libgcrypt20 (= 1.8.5-3),
libgdbm-compat4 (= 1.18.1-5),
libgdbm6 (= 1.18.1-5),
libglib2.0-0 (= 2.62.2-3),
libgmp10 (= 2:6.1.2+dfsg-4),
libgnutls30 (= 3.6.9-5),
libgomp1 (= 9.2.1-8+rpi1),
libgpg-error0 (= 1.36-7),
libhogweed4 (= 3.4.1-1),
libicu63 (= 63.2-2),
libidn2-0 (= 2.2.0-2),
libisl21 (= 0.21-2),
libksba8 (= 1.3.5-2),
libldap-2.4-2 (= 2.4.48+dfsg-1+b1),
libldap-common (= 2.4.48+dfsg-1),
liblz4-1 (= 1.9.1-2),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.37-6),
libmagic1 (= 1:5.37-6),
libmount1 (= 2.34-0.1),
libmpc3 (= 1.1.0-1),
libmpfr6 (= 4.0.2-1),
libncurses6 (= 6.1+20191019-1),
libncursesw6 (= 6.1+20191019-1),
libnettle6 (= 3.4.1-1),
libnpth0 (= 1.6-1),
libp11-kit0 (= 0.23.17-2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre2-8-0 (= 10.32-5),
libpcre3 (= 2:8.39-12),
libperl5.30 (= 5.30.0-7),
libpipeline1 (= 1.5.1-2),
libreadline8 (= 8.0-3),
libsasl2-2 (= 2.1.27+dfsg-1+b1),
libsasl2-modules-db (= 2.1.27+dfsg-1+b1),
libseccomp2 (= 2.4.1-2+rpi1),
libselinux1 (= 2.9-2),
libsemanage-common (= 2.9-3),
libsemanage1 (= 2.9-3),
libsepol1 (= 2.9-2),
libsigsegv2 (= 2.12-2),
libsmartcols1 (= 2.34-0.1),
libsqlite3-0 (= 3.30.1-1),
libstdc++-9-dev (= 9.2.1-8+rpi1),
libstdc++6 (= 9.2.1-8+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 242-7+rpi1),
libtasn1-6 (= 4.14-3),
libtinfo5 (= 6.1+20191019-1),
libtinfo6 (= 6.1+20191019-1),
libtool (= 2.4.6-11),
libubsan1 (= 9.2.1-8+rpi1),
libuchardet0 (= 0.0.6-3),
libudev1 (= 242-7+rpi1),
libunistring2 (= 0.9.10-2),
libuuid1 (= 2.34-0.1),
libxml2 (= 2.9.4+dfsg1-7+b2),
libzstd1 (= 1.4.3+dfsg-1+rpi1),
linux-libc-dev (= 5.2.17-1+rpi1+b2),
login (= 1:4.7-2),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.2.1-1.2),
man-db (= 2.9.0-1),
mawk (= 1.3.3-17),
ncurses-base (= 6.1+20190803-1),
ncurses-bin (= 6.1+20190803-1),
passwd (= 1:4.7-2),
patch (= 2.7.6-6),
perl (= 5.30.0-7),
perl-base (= 5.30.0-7),
perl-modules-5.30 (= 5.30.0-7),
pinentry-curses (= 1.1.0-3),
po-debconf (= 1.0.21),
raspbian-archive-keyring (= 20120528.2),
readline-common (= 8.0-3),
sed (= 4.7-1),
sensible-utils (= 0.0.12),
sysvinit-utils (= 2.96~beta-3),
tar (= 1.30+dfsg-6),
util-linux (= 2.34-0.1),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1573130150"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libgclib-dev_0.11.3-1_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 2319116 bytes: control archive=1820 bytes.
1223 bytes, 27 lines control
1814 bytes, 28 lines md5sums
Package: libgclib-dev
Source: libgclib
Version: 0.11.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3243
Depends: libgclib0 (= 0.11.3-1)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/gpertea/gclib
Description: header files for Genome Code Lib (GCLib)
This is an eclectic gathering of (mostly) C++ code which upstream used
for some bioinformatics projects. The main idea is to provide
lean code and efficient data structures, trying to avoid too many code
dependencies of heavy libraries while minimizing production cycles (and
this also implies a decent compile/build time -- looking at you,
bloated configure scripts and lengthy compile times of Boost code or
other heavy C++ template code..).
.
This code was gathered even before the C++ STL had been fully adopted as
a cross-platform "standard". Since STL by itself is a bit heavier for
most of the C++ needs, it is preferred to use simpler&leaner C++ classes
or templates for basic strings, containers, basic algorithms etc.
.
Header files of Genome Code Lib. It is mainly known for being
used by StringTie but with its own release cycle.
drwxr-xr-x root/root 0 2019-11-07 12:35 ./
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/include/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/include/gclib/
-rw-r--r-- root/root 25377 2019-11-07 12:35 ./usr/include/gclib/GAlnExtend.h
-rw-r--r-- root/root 4020 2019-11-07 12:35 ./usr/include/gclib/GArgs.h
-rw-r--r-- root/root 20605 2019-11-07 12:35 ./usr/include/gclib/GBase.h
-rw-r--r-- root/root 13278 2019-11-07 12:35 ./usr/include/gclib/GBitVec.h
-rw-r--r-- root/root 1952 2019-11-07 12:35 ./usr/include/gclib/GCdbYank.h
-rw-r--r-- root/root 10695 2019-11-07 12:35 ./usr/include/gclib/GFaSeqGet.h
-rw-r--r-- root/root 24292 2019-11-07 12:35 ./usr/include/gclib/GFastaFile.h
-rw-r--r-- root/root 2011 2019-11-07 12:35 ./usr/include/gclib/GFastaIndex.h
-rw-r--r-- root/root 20570 2019-11-07 12:35 ./usr/include/gclib/GHash.hh
-rw-r--r-- root/root 12273 2019-11-07 12:35 ./usr/include/gclib/GIntHash.hh
-rw-r--r-- root/root 20950 2019-11-07 12:35 ./usr/include/gclib/GList.hh
-rw-r--r-- root/root 9706 2019-11-07 12:35 ./usr/include/gclib/GStr.h
-rw-r--r-- root/root 24741 2019-11-07 12:35 ./usr/include/gclib/GThreads.h
-rw-r--r-- root/root 26200 2019-11-07 12:35 ./usr/include/gclib/GVec.hh
-rw-r--r-- root/root 15220 2019-11-07 12:35 ./usr/include/gclib/GapAssem.h
-rw-r--r-- root/root 1149 2019-11-07 12:35 ./usr/include/gclib/codons.h
-rw-r--r-- root/root 1789 2019-11-07 12:35 ./usr/include/gclib/config.h
-rw-r--r-- root/root 13837 2019-11-07 12:35 ./usr/include/gclib/gcdb.h
-rw-r--r-- root/root 435 2019-11-07 12:35 ./usr/include/gclib/gdna.h
-rw-r--r-- root/root 46148 2019-11-07 12:35 ./usr/include/gclib/gff.h
-rw-r--r-- root/root 9392 2019-11-07 12:35 ./usr/include/gclib/gsocket.h
-rw-r--r-- root/root 632 2019-11-07 12:35 ./usr/include/gclib/gstopwatch.h
-rw-r--r-- root/root 241 2019-11-07 12:35 ./usr/include/gclib/proc_mem.h
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 2974922 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/libgclib.a
lrwxrwxrwx root/root 0 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/libgclib.so -> libgclib.so.0.0.1
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 247 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libgclib.pc
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/doc/libgclib-dev/
-rw-r--r-- root/root 562 2019-11-07 12:35 ./usr/share/doc/libgclib-dev/changelog.Debian.gz
-rw-r--r-- root/root 10293 2019-11-07 12:30 ./usr/share/doc/libgclib-dev/copyright
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/doc/libgclib-dev/examples/
-rw-r--r-- root/root 1372 2019-11-06 19:48 ./usr/share/doc/libgclib-dev/examples/mdtest.cpp
libgclib0-dbgsym_0.11.3-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 470096 bytes: control archive=552 bytes.
396 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libgclib0-dbgsym
Source: libgclib
Version: 0.11.3-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 535
Depends: libgclib0 (= 0.11.3-1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libgclib0
Build-Ids: 07c9e10612e2b3f0c652f313806d7b2efec6957c
drwxr-xr-x root/root 0 2019-11-07 12:35 ./
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/debug/.build-id/07/
-rw-r--r-- root/root 536888 2019-11-07 12:35 ./usr/lib/debug/.build-id/07/c9e10612e2b3f0c652f313806d7b2efec6957c.debug
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-11-07 12:35 ./usr/share/doc/libgclib0-dbgsym -> libgclib0
libgclib0_0.11.3-1_armhf.deb
----------------------------
new Debian package, version 2.0.
size 116004 bytes: control archive=5840 bytes.
1141 bytes, 24 lines control
226 bytes, 3 lines md5sums
33 bytes, 1 lines shlibs
23307 bytes, 614 lines symbols
67 bytes, 2 lines triggers
Package: libgclib0
Source: libgclib
Version: 0.11.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 324
Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.5), libstdc++6 (>= 5)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/gpertea/gclib
Description: C++ library to handle biological short sequence data
This is an eclectic gathering of (mostly) C++ code which upstream used
for some bioinformatics projects. The main idea is to provide
lean code and efficient data structures, trying to avoid too many code
dependencies of heavy libraries while minimizing production cycles (and
this also implies a decent compile/build time -- looking at you,
bloated configure scripts and lengthy compile times of Boost code or
other heavy C++ template code..).
.
This code was gathered even before the C++ STL had been fully adopted as
a cross-platform "standard". Since STL by itself is a bit heavier for
most of the C++ needs, it is preferred to use simpler&leaner C++ classes
or templates for basic strings, containers, basic algorithms etc.
drwxr-xr-x root/root 0 2019-11-07 12:35 ./
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/libgclib.so.0 -> libgclib.so.0.0.1
-rw-r--r-- root/root 284172 2019-11-07 12:35 ./usr/lib/arm-linux-gnueabihf/libgclib.so.0.0.1
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-11-07 12:35 ./usr/share/doc/libgclib0/
-rw-r--r-- root/root 562 2019-11-07 12:35 ./usr/share/doc/libgclib0/changelog.Debian.gz
-rw-r--r-- root/root 10293 2019-11-07 12:30 ./usr/share/doc/libgclib0/copyright
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build Type: any
Build-Space: 22664
Build-Time: 174
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 312
Job: libgclib_0.11.3-1
Machine Architecture: armhf
Package: libgclib
Package-Time: 550
Source-Version: 0.11.3-1
Space: 22664
Status: successful
Version: 0.11.3-1
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Finished at 2019-11-09T06:01:28Z
Build needed 00:09:10, 22664k disk space