libbpp-popgen →
2.3.1-5 →
armhf → 2017-08-31 12:44:36
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| libbpp-popgen 2.3.1-5 (armhf) Thu, 31 Aug 2017 12:37:19 +0000 |
+==============================================================================+
Package: libbpp-popgen
Version: 2.3.1-5
Source Version: 2.3.1-5
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-3181e049-1be2-4a27-b6bb-a89ce9ca52ad' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.0 MB]
Fetched 22.1 MB in 9s (2450 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'libbpp-popgen' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/libbpp-popgen.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/libbpp-popgen.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 124 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main libbpp-popgen 2.3.1-5 (dsc) [2222 B]
Get:2 http://172.17.0.1/private buster-staging/main libbpp-popgen 2.3.1-5 (tar) [118 kB]
Get:3 http://172.17.0.1/private buster-staging/main libbpp-popgen 2.3.1-5 (diff) [3468 B]
Fetched 124 kB in 0s (574 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/libbpp-popgen-g8MHHp/libbpp-popgen-2.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbpp-popgen-g8MHHp' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-nyBNal/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-nyBNal/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-nyBNal/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (5831 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 32 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 772 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14868 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-core-dev (>= 2.3.1), libbpp-seq-dev (>= 2.3.1)
Filtered Build-Depends: debhelper (>= 10), cmake, d-shlibs (>= 0.80), libbpp-core-dev (>= 2.3.1), libbpp-seq-dev (>= 2.3.1)
dpkg-deb: building package 'sbuild-build-depends-libbpp-popgen-dummy' in '/<<BUILDDIR>>/resolver-nyBNal/apt_archive/sbuild-build-depends-libbpp-popgen-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-popgen-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Sources [525 B]
Get:5 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ Packages [612 B]
Fetched 2470 B in 0s (6692 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install libbpp-popgen build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl
libtool libuv1 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbpp-core-dev libbpp-core3 libbpp-seq-dev libbpp-seq11 libbsd0 libcroco3
libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libicu57 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2
libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl
libtool libuv1 libxml2 m4 man-db po-debconf
sbuild-build-depends-libbpp-popgen-dummy
0 upgraded, 58 newly installed, 0 to remove and 32 not upgraded.
Need to get 28.0 MB of archives.
After this operation, 110 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-nyBNal/apt_archive ./ sbuild-build-depends-libbpp-popgen-dummy 0.invalid.0 [818 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.0-1 [1294 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-2 [254 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3 [66.9 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3 [98.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libldap-common all 2.4.45+dfsg-1 [87.0 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libldap-2.4-2 armhf 2.4.45+dfsg-1 [197 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.25.0-1 [70.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.18.0-2 [42.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2l-2 [893 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.55.0-1 [264 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-3 [94.7 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.9.1-3 [73.2 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.0-1 [2509 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.31-1 [223 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.31-1 [105 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.31-1 [63.5 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2.1 [736 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf d-shlibs all 0.81 [18.7 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.53.4-3 [2628 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.7.2 [975 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libbpp-core3 armhf 2.3.1-5 [499 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libbpp-core-dev armhf 2.3.1-5 [918 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libbpp-seq11 armhf 2.3.1-8 [405 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libbpp-seq-dev armhf 2.3.1-8 [705 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 28.0 MB in 4s (6033 kB/s)
Selecting previously unselected package groff-base.
(Reading database ... 14868 files and directories currently installed.)
Preparing to unpack .../00-groff-base_1.22.3-9_armhf.deb ...
Unpacking groff-base (1.22.3-9) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../01-libbsd0_0.8.6-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.6-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_9.0.12+nmu1_armhf.deb ...
Unpacking bsdmainutils (9.0.12+nmu1) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.4.2-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.2-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.7.6.1-2_armhf.deb ...
Unpacking man-db (2.7.6.1-2) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../05-cmake-data_3.9.0-1_all.deb ...
Unpacking cmake-data (3.9.0-1) ...
Selecting previously unselected package liblzo2-2:armhf.
Preparing to unpack .../06-liblzo2-2_2.08-1.2_armhf.deb ...
Unpacking liblzo2-2:armhf (2.08-1.2) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../07-libicu57_57.1-6_armhf.deb ...
Unpacking libicu57:armhf (57.1-6) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../08-libxml2_2.9.4+dfsg1-3_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-3) ...
Selecting previously unselected package libarchive13:armhf.
Preparing to unpack .../09-libarchive13_3.2.2-2_armhf.deb ...
Unpacking libarchive13:armhf (3.2.2-2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../10-libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../11-libkrb5support0_1.15.1-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.15.1-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../12-libk5crypto3_1.15.1-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.15.1-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../13-libkrb5-3_1.15.1-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.15.1-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../14-libgssapi-krb5-2_1.15.1-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.15.1-2) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../15-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../16-libsasl2-2_2.1.27~101-g0780600+dfsg-3_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
Selecting previously unselected package libldap-common.
Preparing to unpack .../17-libldap-common_2.4.45+dfsg-1_all.deb ...
Unpacking libldap-common (2.4.45+dfsg-1) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../18-libldap-2.4-2_2.4.45+dfsg-1_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.45+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../19-libnghttp2-14_1.25.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.25.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../20-libpsl5_0.18.0-2_armhf.deb ...
Unpacking libpsl5:armhf (0.18.0-2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../21-librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../22-libssh2-1_1.8.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../23-libssl1.0.2_1.0.2l-2_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2l-2) ...
Selecting previously unselected package libcurl3:armhf.
Preparing to unpack .../24-libcurl3_7.55.0-1_armhf.deb ...
Unpacking libcurl3:armhf (7.55.0-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../25-libexpat1_2.2.3-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.3-1) ...
Selecting previously unselected package libjsoncpp1:armhf.
Preparing to unpack .../26-libjsoncpp1_1.7.4-3_armhf.deb ...
Unpacking libjsoncpp1:armhf (1.7.4-3) ...
Selecting previously unselected package librhash0.
Preparing to unpack .../27-librhash0_1.3.4-3_armhf.deb ...
Unpacking librhash0 (1.3.4-3) ...
Selecting previously unselected package libuv1:armhf.
Preparing to unpack .../28-libuv1_1.9.1-3_armhf.deb ...
Unpacking libuv1:armhf (1.9.1-3) ...
Selecting previously unselected package cmake.
Preparing to unpack .../29-cmake_3.9.0-1_armhf.deb ...
Unpacking cmake (3.9.0-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../30-libmagic-mgc_1%3a5.31-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.31-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../31-libmagic1_1%3a5.31-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.31-1) ...
Selecting previously unselected package file.
Preparing to unpack .../32-file_1%3a5.31-1_armhf.deb ...
Unpacking file (1:5.31-1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../33-gettext-base_0.19.8.1-4_armhf.deb ...
Unpacking gettext-base (0.19.8.1-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../34-libsigsegv2_2.11-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.11-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../35-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../36-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../37-autotools-dev_20161112.1_all.deb ...
Unpacking autotools-dev (20161112.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../38-automake_1%3a1.15.1-2.1_all.deb ...
Unpacking automake (1:1.15.1-2.1) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../39-autopoint_0.19.8.1-4_all.deb ...
Unpacking autopoint (0.19.8.1-4) ...
Selecting previously unselected package d-shlibs.
Preparing to unpack .../40-d-shlibs_0.81_all.deb ...
Unpacking d-shlibs (0.81) ...
Selecting previously unselected package libtool.
Preparing to unpack .../41-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../42-dh-autoreconf_14_all.deb ...
Unpacking dh-autoreconf (14) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../43-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../44-libfile-stripnondeterminism-perl_0.038-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.038-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../45-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../46-dh-strip-nondeterminism_0.038-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.038-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../47-libglib2.0-0_2.53.4-3_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.53.4-3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../48-libcroco3_0.6.12-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../49-gettext_0.19.8.1-4_armhf.deb ...
Unpacking gettext (0.19.8.1-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../50-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../51-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../52-debhelper_10.7.2_all.deb ...
Unpacking debhelper (10.7.2) ...
Selecting previously unselected package libbpp-core3:armhf.
Preparing to unpack .../53-libbpp-core3_2.3.1-5_armhf.deb ...
Unpacking libbpp-core3:armhf (2.3.1-5) ...
Selecting previously unselected package libbpp-core-dev.
Preparing to unpack .../54-libbpp-core-dev_2.3.1-5_armhf.deb ...
Unpacking libbpp-core-dev (2.3.1-5) ...
Selecting previously unselected package libbpp-seq11:armhf.
Preparing to unpack .../55-libbpp-seq11_2.3.1-8_armhf.deb ...
Unpacking libbpp-seq11:armhf (2.3.1-8) ...
Selecting previously unselected package libbpp-seq-dev.
Preparing to unpack .../56-libbpp-seq-dev_2.3.1-8_armhf.deb ...
Unpacking libbpp-seq-dev (2.3.1-8) ...
Selecting previously unselected package sbuild-build-depends-libbpp-popgen-dummy.
Preparing to unpack .../57-sbuild-build-depends-libbpp-popgen-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-libbpp-popgen-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.3-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.25.0-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up libldap-common (2.4.45+dfsg-1) ...
Setting up libuv1:armhf (1.9.1-3) ...
Setting up libpsl5:armhf (0.18.0-2) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.53.4-3) ...
No schema files found: doing nothing.
Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up libbpp-core3:armhf (2.3.1-5) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up d-shlibs (0.81) ...
Setting up gettext-base (0.19.8.1-4) ...
Setting up cmake-data (3.9.0-1) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-3) ...
Setting up libmagic-mgc (1:5.31-1) ...
Setting up libmagic1:armhf (1:5.31-1) ...
Setting up librhash0 (1.3.4-3) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Setting up libssl1.0.2:armhf (1.0.2l-2) ...
Setting up libssh2-1:armhf (1.8.0-1) ...
Processing triggers for libc-bin (2.24-12) ...
Setting up autotools-dev (20161112.1) ...
Setting up libldap-2.4-2:armhf (2.4.45+dfsg-1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-4) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up libbpp-seq11:armhf (2.3.1-8) ...
Setting up gettext (0.19.8.1-4) ...
Setting up libarchive13:armhf (3.2.2-2) ...
Setting up libbpp-core-dev (2.3.1-5) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.31-1) ...
Setting up libkrb5support0:armhf (1.15.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-2.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up libk5crypto3:armhf (1.15.1-2) ...
Setting up libbpp-seq-dev (2.3.1-8) ...
Setting up po-debconf (1.0.20) ...
Setting up libkrb5-3:armhf (1.15.1-2) ...
Setting up libgssapi-krb5-2:armhf (1.15.1-2) ...
Setting up libcurl3:armhf (7.55.0-1) ...
Setting up cmake (3.9.0-1) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.7.2) ...
Setting up dh-autoreconf (14) ...
Setting up sbuild-build-depends-libbpp-popgen-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-12) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29-4+rpi1 dpkg-dev_1.18.24 g++-7_7.1.0-13+rpi1 gcc-7_7.1.0-13+rpi1 libc6-dev_2.24-12 libstdc++-7-dev_7.1.0-13+rpi1 libstdc++6_7.1.0-13+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.116 apt_1.5~beta1+b3 autoconf_2.69-11 automake_1:1.15.1-2.1 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4+rpi1 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 cmake_3.9.0-1 cmake-data_3.9.0-1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.1.0-2 cpp-7_7.1.0-13+rpi1 d-shlibs_0.81 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 fakeroot_1.21-3.1 file_1:5.31-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-7_7.1.0-13+rpi1 gcc_4:7.1.0-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.1.0-13+rpi1 gcc-7-base_7.1.0-13+rpi1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-10 libapt-pkg5.0_1.5~beta1+b3 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-2 libasan4_7.1.0-13+rpi1 libassuan0_2.4.3-3 libatomic1_7.1.0-13+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-2+rpi1 libbpp-core-dev_2.3.1-5 libbpp-core3_2.3.1-5 libbpp-seq-dev_2.3.1-8 libbpp-seq11_2.3.1-8 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-13+rpi1 libcilkrts5_7.1.0-13+rpi1 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libcurl3_7.55.0-1 libdb5.3_5.3.28-13+rpi1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libexpat1_2.2.3-1 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-7-dev_7.1.0-13+rpi1 libgcc1_1:7.1.0-13+rpi1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-13+rpi1 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15.1-2 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2 libisl15_0.18-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnghttp2-14_1.25.0-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.31-1 libprocps6_2:3.3.12-3 libpsl5_0.18.0-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 librhash0_1.3.4-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-4 libstdc++-7-dev_7.1.0-13+rpi1 libstdc++6_7.1.0-13+rpi1 libsystemd0_234-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-13+rpi1 libudev1_234-2 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libuv1_1.9.1-3 libxml2_2.9.4+dfsg1-3 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-4 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-popgen-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_234-2 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Aug 24 19:31:05 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./libbpp-popgen_2.3.1-5.dsc
dpkg-source: info: extracting libbpp-popgen in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbpp-popgen_2.3.1.orig.tar.gz
dpkg-source: info: unpacking libbpp-popgen_2.3.1-5.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-3181e049-1be2-4a27-b6bb-a89ce9ca52ad
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package libbpp-popgen
dpkg-buildpackage: info: source version 2.3.1-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build libbpp-popgen-2.3.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-- The CXX compiler identification is GNU 7.1.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- bpp-core 3.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
-- includes: /usr/include
-- bpp-seq 11.0.0 found:
-- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a
-- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0
-- includes: /usr/include
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend
make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake --color=
Scanning dependencies of target bpp-popgen-shared
Scanning dependencies of target bpp-popgen-static
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o
[ 3%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o
[ 4%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/BasicAlleleInfo.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp
[ 6%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/BasicAlleleInfo.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp:55:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype::BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException) : allele_index_(vector<size_t>(2))
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp:55:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype::BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException) : allele_index_(vector<size_t>(2))
^~~~~
[ 8%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp
[ 9%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp
[ 11%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp
[ 12%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:50:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:80:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:93:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:107:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:122:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:137:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:164:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:197:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:211:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:50:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:80:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:93:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:107:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:122:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:137:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:164:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:197:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp:211:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp:93:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void AnalyzedSequences::setAlphabet(const std::string& alpha_type) throw (Exception)
^~~~~
[ 14%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp
[ 16%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp
[ 17%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp:93:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void AnalyzedSequences::setAlphabet(const std::string& alpha_type) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:119:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addLocality(Locality<double>& locality) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:131:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:143:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& DataSet::getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:152:83: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& DataSet::getLocalityByName(const std::string& name) const throw (LocalityNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:166:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:176:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:205:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addGroup(const Group& group) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:217:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addEmptyGroup(size_t group_id) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:229:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& DataSet::getGroupById(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:241:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
string DataSet::getGroupName(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:254:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:269:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getGroupPosition(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:281:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& DataSet::getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:290:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:307:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:338:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:369:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:405:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addIndividualToGroup(size_t group, const Individual& individual) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:423:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addEmptyIndividualToGroup(size_t group, const std::string& individual_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:439:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getNumberOfIndividualsInGroup(size_t group_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:448:109: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getIndividualPositionInGroup(size_t group_position, const std::string& individual_id) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:464:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual* DataSet::getIndividualAtPositionFromGroup(size_t group_position, size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:480:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual* DataSet::getIndividualByIdFromGroup(size_t group_position, const std::string& individual_id) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:496:102: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualAtPositionFromGroup(size_t group_position, size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:512:102: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualByIdFromGroup(size_t group_position, const std::string& individual_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:528:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualSexInGroup(size_t group_position, size_t individual_position, const unsigned short sex) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:544:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned short DataSet::getIndividualSexInGroup(size_t group_position, size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:560:109: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualDateInGroup(size_t group_position, size_t individual_position, const Date& date) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:576:104: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date* DataSet::getIndividualDateInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:596:122: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualCoordInGroup(size_t group_position, size_t individual_position, const Point2D<double>& coord) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:612:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>* DataSet::getIndividualCoordInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:632:135: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualLocalityInGroupByName(size_t group_position, size_t individual_position, const std::string& locality_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:652:120: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* DataSet::getIndividualLocalityInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:672:147: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addIndividualSequenceInGroup(size_t group_position, size_t individual_position, size_t sequence_position, const Sequence& sequence) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:701:152: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& DataSet::getIndividualSequenceByNameInGroup(size_t group_position, size_t individual_position, const std::string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:725:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& DataSet::getIndividualSequenceAtPositionInGroup(size_t group_position, size_t individual_position, size_t sequence_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:749:138: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualSequenceByNameInGroup(size_t group_position, size_t individual_position, const std::string& sequence_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:773:134: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualSequenceAtPositionInGroup(size_t group_position, size_t individual_position, size_t sequence_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:797:127: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> DataSet::getIndividualSequencesNamesInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:817:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getIndividualSequencePositionInGroup(size_t group_position, size_t individual_position, const std::string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:841:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getIndividualNumberOfSequencesInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:861:131: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualGenotypeInGroup(size_t group_position, size_t individual_position, const MultilocusGenotype& genotype) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:877:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::initIndividualGenotypeInGroup(size_t group_position, size_t individual_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:905:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualGenotypeInGroup(size_t group_position, size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:921:161: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualMonolocusGenotypeInGroup(size_t group_position, size_t individual_position, size_t locus_position, const MonolocusGenotype& monogen) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:945:177: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualMonolocusGenotypeByAlleleKeyInGroup(size_t group_position, size_t individual_position, size_t locus_position, const std::vector<size_t> allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:973:179: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualMonolocusGenotypeByAlleleIdInGroup(size_t group_position, size_t individual_position, size_t locus_position, const std::vector<std::string> allele_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1002:153: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype* DataSet::getIndividualMonolocusGenotypeInGroup(size_t group_position, size_t individual_position, size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1046:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* DataSet::getAlphabet() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1055:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string DataSet::getAlphabetType() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1066:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1084:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::initAnalyzedLoci(size_t number_of_loci) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1093:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* DataSet::getAnalyzedLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1110:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setLocusInfo(size_t locus_position, const LocusInfo& locus) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1126:83: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const LocusInfo& DataSet::getLocusInfoByName(const std::string& locus_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1142:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const LocusInfo& DataSet::getLocusInfoAtPosition(size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1162:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addAlleleInfoByLocusName(const std::string& locus_name, const AlleleInfo& allele) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1182:93: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addAlleleInfoByLocusPosition(size_t locus_position, const AlleleInfo& allele) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1202:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getNumberOfLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1211:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getPloidyByLocusName(const std::string& locus_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1227:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getPloidyByLocusPosition(size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1268:133: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* DataSet::getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1307:163: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* DataSet::getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception)
^~~~~
[ 19%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:70:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<DataSet> buildDataSet(const OrderedSequenceContainer& osc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:75:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<DataSet> buildDataSet(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:45:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<DataSet> DataSetTools::buildDataSet(const OrderedSequenceContainer& osc) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:64:95: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<DataSet> DataSetTools::buildDataSet(const PolymorphismSequenceContainer& psc) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:43:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:50:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date::Date(const int day, const int month, const int year) throw (BadIntegerException) : day_(day),
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:78:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Date::setDate(const int day, const int month, const int year) throw (BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:96:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Date::setMonth(const int month) throw (BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:104:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Date::setDay(const int day) throw (BadIntegerException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:119:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addLocality(Locality<double>& locality) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:131:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:143:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& DataSet::getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:152:83: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& DataSet::getLocalityByName(const std::string& name) const throw (LocalityNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:166:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:176:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:205:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addGroup(const Group& group) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:217:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addEmptyGroup(size_t group_id) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:229:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& DataSet::getGroupById(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:241:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
string DataSet::getGroupName(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:254:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:269:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getGroupPosition(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:281:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& DataSet::getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:290:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:307:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:338:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:369:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:405:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addIndividualToGroup(size_t group, const Individual& individual) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:423:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addEmptyIndividualToGroup(size_t group, const std::string& individual_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:439:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getNumberOfIndividualsInGroup(size_t group_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:448:109: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getIndividualPositionInGroup(size_t group_position, const std::string& individual_id) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:464:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual* DataSet::getIndividualAtPositionFromGroup(size_t group_position, size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:480:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual* DataSet::getIndividualByIdFromGroup(size_t group_position, const std::string& individual_id) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:496:102: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualAtPositionFromGroup(size_t group_position, size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:512:102: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualByIdFromGroup(size_t group_position, const std::string& individual_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:528:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualSexInGroup(size_t group_position, size_t individual_position, const unsigned short sex) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:544:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned short DataSet::getIndividualSexInGroup(size_t group_position, size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:560:109: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualDateInGroup(size_t group_position, size_t individual_position, const Date& date) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:576:104: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date* DataSet::getIndividualDateInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:596:122: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualCoordInGroup(size_t group_position, size_t individual_position, const Point2D<double>& coord) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:612:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>* DataSet::getIndividualCoordInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:632:135: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualLocalityInGroupByName(size_t group_position, size_t individual_position, const std::string& locality_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:652:120: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* DataSet::getIndividualLocalityInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:672:147: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addIndividualSequenceInGroup(size_t group_position, size_t individual_position, size_t sequence_position, const Sequence& sequence) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:701:152: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& DataSet::getIndividualSequenceByNameInGroup(size_t group_position, size_t individual_position, const std::string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:725:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& DataSet::getIndividualSequenceAtPositionInGroup(size_t group_position, size_t individual_position, size_t sequence_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:749:138: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualSequenceByNameInGroup(size_t group_position, size_t individual_position, const std::string& sequence_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:773:134: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualSequenceAtPositionInGroup(size_t group_position, size_t individual_position, size_t sequence_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:797:127: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> DataSet::getIndividualSequencesNamesInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:817:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getIndividualSequencePositionInGroup(size_t group_position, size_t individual_position, const std::string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:841:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getIndividualNumberOfSequencesInGroup(size_t group_position, size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:861:131: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualGenotypeInGroup(size_t group_position, size_t individual_position, const MultilocusGenotype& genotype) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:877:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::initIndividualGenotypeInGroup(size_t group_position, size_t individual_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:905:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::deleteIndividualGenotypeInGroup(size_t group_position, size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:921:161: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualMonolocusGenotypeInGroup(size_t group_position, size_t individual_position, size_t locus_position, const MonolocusGenotype& monogen) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:945:177: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualMonolocusGenotypeByAlleleKeyInGroup(size_t group_position, size_t individual_position, size_t locus_position, const std::vector<size_t> allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:973:179: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setIndividualMonolocusGenotypeByAlleleIdInGroup(size_t group_position, size_t individual_position, size_t locus_position, const std::vector<std::string> allele_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1002:153: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype* DataSet::getIndividualMonolocusGenotypeInGroup(size_t group_position, size_t individual_position, size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1046:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* DataSet::getAlphabet() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1055:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string DataSet::getAlphabetType() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1066:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1084:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::initAnalyzedLoci(size_t number_of_loci) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1093:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* DataSet::getAnalyzedLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1110:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::setLocusInfo(size_t locus_position, const LocusInfo& locus) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1126:83: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const LocusInfo& DataSet::getLocusInfoByName(const std::string& locus_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1142:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const LocusInfo& DataSet::getLocusInfoAtPosition(size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1162:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addAlleleInfoByLocusName(const std::string& locus_name, const AlleleInfo& allele) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1182:93: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DataSet::addAlleleInfoByLocusPosition(size_t locus_position, const AlleleInfo& allele) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1202:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getNumberOfLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1211:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getPloidyByLocusName(const std::string& locus_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1227:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t DataSet::getPloidyByLocusPosition(size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1268:133: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* DataSet::getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception)
^~~~~
[ 20%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.cpp:1307:163: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* DataSet::getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception)
^~~~~
[ 22%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp
[ 24%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:43:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:50:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date::Date(const int day, const int month, const int year) throw (BadIntegerException) : day_(day),
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:78:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Date::setDate(const int day, const int month, const int year) throw (BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:96:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Date::setMonth(const int month) throw (BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.cpp:104:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Date::setDay(const int day) throw (BadIntegerException)
^~~~~
[ 25%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
[ 27%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:98:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::addIndividual(const Individual& ind) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:110:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:120:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Group::getIndividualPosition(const std::string& individual_id) const throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:130:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> Group::removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:145:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> Group::removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:154:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:166:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:187:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& Group::getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:198:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:227:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualSexAtPosition(size_t individual_position, const unsigned short sex) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:234:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned short Group::getIndividualSexAtPosition(size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:241:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualDateAtPosition(size_t individual_position, const Date& date) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:248:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& Group::getIndividualDateAtPosition(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:262:100: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualCoordAtPosition(size_t individual_position, const Point2D<double>& coord) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:269:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& Group::getIndividualCoordAtPosition(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:283:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualLocalityAtPosition(size_t individual_position, const Locality<double>* locality) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:290:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& Group::getIndividualLocalityAtPosition(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:304:125: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::addIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position, const Sequence& sequence) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:326:115: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& Group::getIndividualSequenceByName(size_t individual_position, const string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:344:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& Group::getIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:362:101: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualSequenceByName(size_t individual_position, const string& sequence_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:380:102: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:398:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool Group::hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:405:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
vector<string> Group::getIndividualSequencesNames(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:419:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Group::getIndividualSequencePosition(size_t individual_position, const string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:437:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Group::getIndividualNumberOfSequences(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:451:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualSequences(size_t individual_position, const MapSequenceContainer& msc) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:458:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:465:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::initIndividualGenotype(size_t individual_position, size_t loci_number) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:483:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:490:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool Group::hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:497:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualMonolocusGenotype(size_t individual_position, size_t locus_position, const MonolocusGenotype& monogen) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:515:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualMonolocusGenotypeByAlleleKey(size_t individual_position, size_t locus_position, const std::vector<size_t>& allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:537:177: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualMonolocusGenotypeByAlleleId(size_t individual_position, size_t locus_position, const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:559:122: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& Group::getIndividualMonolocusGenotype(size_t individual_position, size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:587:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* Group::getAlphabet() const throw (NullPointerException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:70:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<DataSet> buildDataSet(const OrderedSequenceContainer& osc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.h:75:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<DataSet> buildDataSet(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:45:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<DataSet> DataSetTools::buildDataSet(const OrderedSequenceContainer& osc) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/DataSetTools.cpp:64:95: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<DataSet> DataSetTools::buildDataSet(const PolymorphismSequenceContainer& psc) throw (Exception)
^~~~~
[ 29%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:183:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& Individual::getDate() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:215:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& Individual::getCoord() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:232:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setX(const double x) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:242:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setY(const double y) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:252:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double Individual::getX() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:262:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double Individual::getY() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:280:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* Individual::getLocality() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:299:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:324:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:341:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:357:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::deleteSequenceByName(const std::string& sequence_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:373:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::deleteSequenceAtPosition(size_t sequence_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:389:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> Individual::getSequencesNames() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:398:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> Individual::getSequencesPositions() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:413:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::getSequencePosition(const std::string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:452:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* Individual::getSequenceAlphabet() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:477:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& Individual::getSequences() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:495:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::initGenotype(size_t loci_number) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:511:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& Individual::getGenotype() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:534:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setMonolocusGenotype(size_t locus_position, const MonolocusGenotype& monogen) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:550:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setMonolocusGenotypeByAlleleKey(size_t locus_position, const std::vector<size_t> allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:570:143: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setMonolocusGenotypeByAlleleId(size_t locus_position, const std::vector<std::string> allele_id, const LocusInfo& locus_info) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:590:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& Individual::getMonolocusGenotype(size_t locus_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:606:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::countNonMissingLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:615:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::countHomozygousLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:624:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::countHeterozygousLoci() const throw (NullPointerException)
^~~~~
[ 30%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:98:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::addIndividual(const Individual& ind) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:110:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:120:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Group::getIndividualPosition(const std::string& individual_id) const throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:130:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> Group::removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:145:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> Group::removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:154:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:166:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:187:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& Group::getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:198:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:227:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualSexAtPosition(size_t individual_position, const unsigned short sex) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:234:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned short Group::getIndividualSexAtPosition(size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:241:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualDateAtPosition(size_t individual_position, const Date& date) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:248:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& Group::getIndividualDateAtPosition(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:262:100: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualCoordAtPosition(size_t individual_position, const Point2D<double>& coord) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:269:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& Group::getIndividualCoordAtPosition(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:283:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualLocalityAtPosition(size_t individual_position, const Locality<double>* locality) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:290:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& Group::getIndividualLocalityAtPosition(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:304:125: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::addIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position, const Sequence& sequence) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:326:115: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& Group::getIndividualSequenceByName(size_t individual_position, const string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:344:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Sequence& Group::getIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:362:101: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualSequenceByName(size_t individual_position, const string& sequence_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:380:102: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:398:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool Group::hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:405:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
vector<string> Group::getIndividualSequencesNames(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:419:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Group::getIndividualSequencePosition(size_t individual_position, const string& sequence_name) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:437:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Group::getIndividualNumberOfSequences(size_t individual_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:451:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualSequences(size_t individual_position, const MapSequenceContainer& msc) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:458:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:465:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::initIndividualGenotype(size_t individual_position, size_t loci_number) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:483:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:490:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool Group::hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:497:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualMonolocusGenotype(size_t individual_position, size_t locus_position, const MonolocusGenotype& monogen) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:515:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualMonolocusGenotypeByAlleleKey(size_t individual_position, size_t locus_position, const std::vector<size_t>& allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:537:177: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Group::setIndividualMonolocusGenotypeByAlleleId(size_t individual_position, size_t locus_position, const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:559:122: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& Group::getIndividualMonolocusGenotype(size_t individual_position, size_t locus_position) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Group.cpp:587:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* Group::getAlphabet() const throw (NullPointerException)
^~~~~
[ 32%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:183:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& Individual::getDate() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:215:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& Individual::getCoord() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:232:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setX(const double x) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:242:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setY(const double y) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:252:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double Individual::getX() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:262:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double Individual::getY() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:280:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* Individual::getLocality() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:299:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:324:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:341:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:357:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::deleteSequenceByName(const std::string& sequence_name) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:373:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::deleteSequenceAtPosition(size_t sequence_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:389:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> Individual::getSequencesNames() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:398:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> Individual::getSequencesPositions() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:413:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::getSequencePosition(const std::string& sequence_name) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:452:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* Individual::getSequenceAlphabet() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:477:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& Individual::getSequences() const throw (NullPointerException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:495:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::initGenotype(size_t loci_number) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:511:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& Individual::getGenotype() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:534:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setMonolocusGenotype(size_t locus_position, const MonolocusGenotype& monogen) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:550:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setMonolocusGenotypeByAlleleKey(size_t locus_position, const std::vector<size_t> allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:570:143: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Individual::setMonolocusGenotypeByAlleleId(size_t locus_position, const std::vector<std::string> allele_id, const LocusInfo& locus_info) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:590:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& Individual::getMonolocusGenotype(size_t locus_position) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:606:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::countNonMissingLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:615:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::countHomozygousLoci() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Individual.cpp:624:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t Individual::countHeterozygousLoci() const throw (NullPointerException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:52:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void AbstractIDataSet::read(const std::string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:59:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* AbstractIDataSet::read(std::istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:66:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* AbstractIDataSet::read(const std::string& path) throw (Exception)
^~~~~
[ 33%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp
[ 35%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp
[ 37%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:52:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void AbstractIDataSet::read(const std::string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:59:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* AbstractIDataSet::read(std::istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp:66:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* AbstractIDataSet::read(const std::string& path) throw (Exception)
^~~~~
[ 38%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:52:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void AbstractODataSet::write(const string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp:52:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void AbstractODataSet::write(const string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
[ 40%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:71:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(std::ostream& os, const DataSet& data_set) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:72:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:51:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinDon::write(ostream& os, const DataSet& data_set) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:78:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinDon::write(const string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
[ 41%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp
[ 43%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:74:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(std::ostream& os, const DataSet& data_set) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:75:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:49:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinVarSingle::write(ostream& os, const DataSet& data_set) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:110:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinVarSingle::write(const string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
[ 45%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:71:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(std::ostream& os, const DataSet& data_set) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h:72:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:51:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinDon::write(ostream& os, const DataSet& data_set) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp:78:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinDon::write(const string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/../AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:74:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(std::ostream& os, const DataSet& data_set) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h:75:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:49:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinVarSingle::write(ostream& os, const DataSet& data_set) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp:110:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void DarwinVarSingle::write(const string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:99:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:100:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:101:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:102:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:61:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void GeneMapperCsvExport::read(std::istream& is, DataSet& data_set) throw (Exception)
^~~~~
[ 46%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:185:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void GeneMapperCsvExport::read(const std::string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:190:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* GeneMapperCsvExport::read(std::istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:195:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* GeneMapperCsvExport::read(const std::string& path) throw (Exception)
^~~~~
[ 48%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:50:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/../AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:99:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:100:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:101:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:102:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:61:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void GeneMapperCsvExport::read(std::istream& is, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:185:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void GeneMapperCsvExport::read(const std::string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:190:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* GeneMapperCsvExport::read(std::istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:195:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* GeneMapperCsvExport::read(const std::string& path) throw (Exception)
^~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::GeneMapperCsvExport::Allele; _Alloc = std::allocator<bpp::GeneMapperCsvExport::Allele>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<bpp::GeneMapperCsvExport::Allele*, std::vector<bpp::GeneMapperCsvExport::Allele> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::GeneMapperCsvExport::Allele&}; _Tp = bpp::GeneMapperCsvExport::Allele; _Alloc = std::allocator<bpp::GeneMapperCsvExport::Allele>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<bpp::GeneMapperCsvExport::Allele>::iterator {aka __gnu_cxx::__normal_iterator<bpp::GeneMapperCsvExport::Allele*, std::vector<bpp::GeneMapperCsvExport::Allele> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = bpp::GeneMapperCsvExport::Allele*; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*; _Allocator = std::allocator<bpp::GeneMapperCsvExport::Allele>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<bpp::GeneMapperCsvExport::Allele*>; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*; _Tp = bpp::GeneMapperCsvExport::Allele]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:72:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:73:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:74:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:75:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:49:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genepop::read(istream& is, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:194:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genepop::read(const string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:199:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genepop::read(istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:204:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genepop::read(const string& path) throw (Exception)
^~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<bpp::GeneMapperCsvExport::Allele*>; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<bpp::GeneMapperCsvExport::Allele*>; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*; bool _TrivialValueTypes = false]':
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/../AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:72:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:73:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:74:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h:75:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:49:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genepop::read(istream& is, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:194:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genepop::read(const string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:199:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genepop::read(istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp:204:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genepop::read(const string& path) throw (Exception)
^~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::GeneMapperCsvExport::Allele; _Alloc = std::allocator<bpp::GeneMapperCsvExport::Allele>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<bpp::GeneMapperCsvExport::Allele*, std::vector<bpp::GeneMapperCsvExport::Allele> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 50%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const bpp::GeneMapperCsvExport::Allele&}; _Tp = bpp::GeneMapperCsvExport::Allele; _Alloc = std::allocator<bpp::GeneMapperCsvExport::Allele>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<bpp::GeneMapperCsvExport::Allele>::iterator {aka __gnu_cxx::__normal_iterator<bpp::GeneMapperCsvExport::Allele*, std::vector<bpp::GeneMapperCsvExport::Allele> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Exceptions.h:46,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp:40:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = bpp::GeneMapperCsvExport::Allele*; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*; _Allocator = std::allocator<bpp::GeneMapperCsvExport::Allele>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<bpp::GeneMapperCsvExport::Allele*>; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*; _Tp = bpp::GeneMapperCsvExport::Allele]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<bpp::GeneMapperCsvExport::Allele*>; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<bpp::GeneMapperCsvExport::Allele*>; _ForwardIterator = bpp::GeneMapperCsvExport::Allele*; bool _TrivialValueTypes = false]':
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type 'std::move_iterator<bpp::GeneMapperCsvExport::Allele*>' changed in GCC 7.1
[ 51%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp
[ 53%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp
[ 54%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:74:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:75:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:76:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:50:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genetix::read(istream& is, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:121:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genetix::read(const string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:126:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genetix::read(istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:131:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genetix::read(const string& path) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:177:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date* getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:205:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>* getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:220:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:230:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:238:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:246:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:260:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:273:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:284:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:295:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:306:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:359:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:218:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date* MultiSeqIndividual::getDate() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:266:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>* MultiSeqIndividual::getCoord() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:283:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void MultiSeqIndividual::setX(const double x) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:293:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void MultiSeqIndividual::setY(const double y) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:303:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultiSeqIndividual::getX() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:313:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultiSeqIndividual::getY() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:331:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* MultiSeqIndividual::getLocality() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:349:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const VectorSequenceContainer* MultiSeqIndividual::getVectorSequenceContainer(const std::string& id) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:366:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:385:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:409:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:460:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:486:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* MultiSeqIndividual::getGenotype() const throw (NullPointerException)
^~~~~
[ 56%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:93:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PopgenlibIO(const std::string& missing_data_symbol, const std::string& data_separator) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:147:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:153:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:154:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:155:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:165:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(std::ostream& os, const DataSet& data_set) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:167:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:60:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception) : data_separator_(' '),
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:76:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::setMissingDataSymbol(const std::string& missing_data_symbol) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:87:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::setDataSeparator(const std::string& data_separator) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:134:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::read(std::istream& is, DataSet& data_set) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:530:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::read(const std::string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:535:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* PopgenlibIO::read(std::istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:540:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* PopgenlibIO::read(const std::string& path) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:545:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::write(std::ostream& os, const DataSet& data_set) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:689:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:50:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/../AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:74:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:75:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h:76:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:50:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genetix::read(istream& is, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:121:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void Genetix::read(const string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:126:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genetix::read(istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp:131:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* Genetix::read(const string& path) throw (Exception)
^~~~~
[ 58%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/GeneralExceptions.cpp
[ 59%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
[ 61%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp
[ 62%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:175:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date& getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:203:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>& getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:218:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:228:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:236:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:244:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:258:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:278:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:289:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:300:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:309:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceByName(const std::string& sequence_name) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:318:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequenceAtPosition(size_t sequence_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:338:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getSequenceAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:346:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getSequencesNames() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:354:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<size_t> getSequencesPositions() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:362:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getSequencePosition(const std::string& sequence_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:379:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const OrderedSequenceContainer& getSequences() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:394:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initGenotype(size_t loci_number) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:399:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype& getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:418:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:428:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:438:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:446:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& getMonolocusGenotype(size_t locus_position) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:453:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countNonMissingLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:460:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHomozygousLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Individual.h:467:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t countHeterozygousLoci() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:144:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividual(const Individual& ind) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:151:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividual(const std::string& individual_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:174:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:183:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Individual& getIndividualById(const std::string& individual_id) const throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:194:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:207:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:219:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<Individual> removeIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:231:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualById(const std::string& individual_id) throw (IndividualNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:240:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualAtPosition(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:256:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:264:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:272:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:281:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:289:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:298:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:327:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:337:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:357:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:367:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:374:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualSequences(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:382:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::vector<std::string> getIndividualSequencesNames(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:392:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:400:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getIndividualNumberOfSequences(size_t individual_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:408:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:415:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setIndividualGenotype(size_t individual_position, const MultilocusGenotype& genotype) throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:425:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:432:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteIndividualGenotype(size_t individual_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:439:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool hasIndividualGenotype(size_t individual_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:449:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:460:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:471:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:481:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../Group.h:491:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:94:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:102:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:110:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:119:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:139:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:157:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (LocusNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedLoci.h:165:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:58:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../AnalyzedSequences.h:98:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAlphabet(const std::string& alpha_type) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../../PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:108:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addLocality(Locality<double>& locality) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:117:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getLocalityPosition(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:126:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityAtPosition(size_t locality_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:133:76: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>& getLocalityByName(const std::string& name) const throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityAtPosition(size_t locality_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:147:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteLocalityByName(const std::string& name) throw (LocalityNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:167:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addGroup(const Group& group) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:172:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyGroup(size_t group_id) throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:177:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupById(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:184:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupPosition(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:191:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:197:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, const std::string& group_name) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:204:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Group& getGroupAtPosition(size_t group_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:211:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteGroupAtPosition(size_t group_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:224:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeTwoGroups(size_t source_id, size_t target_id) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:236:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void mergeGroups(std::vector<size_t>& group_ids) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:246:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void splitGroup(size_t group_id, std::vector<size_t> individuals_selection) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:255:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addIndividualToGroup(size_t group_position, const Individual& individual) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:263:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addEmptyIndividualToGroup(size_t group_position, const std::string& individual_id) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:271:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:280:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:288:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:297:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:306:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:315:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:324:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:333:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:342:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:352:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:361:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:371:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:381:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:391:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:403:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IODataSet.h:43:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:415:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:426:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:437:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:448:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:458:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:469:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:479:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:488:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:500:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:509:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:520:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:532:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:544:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:556:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:574:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Alphabet* getAlphabet() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:581:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getAlphabetType() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:589:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAnalyzedLoci(const AnalyzedLoci& analyzedLoci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:596:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void initAnalyzedLoci(size_t number_of_loci) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:603:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AnalyzedLoci* getAnalyzedLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:617:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:623:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:629:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:635:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:641:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:646:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:651:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusName(const std::string& locus_name) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:656:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getPloidyByLocusPosition(size_t locus_position) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:669:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismMultiGContainer* getPolymorphismMultiGContainer(const std::map<size_t, std::vector<size_t> >& selection) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/../DataSet.h:678:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* getPolymorphismSequenceContainer(const std::map<size_t, std::vector<size_t> >& selection, size_t sequence_position) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:65:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:70:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:75:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/IDataSet.h:80:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:67:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(std::istream& is, DataSet& data_set) throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:69:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:71:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h:73:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual DataSet* read(const std::string& path) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:44:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:53,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:65:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/ODataSet.h:70:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception) = 0;
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:64:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(std::ostream& os, const DataSet& data_set) const throw (Exception) = 0;
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.h:65:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
virtual void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:93:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PopgenlibIO(const std::string& missing_data_symbol, const std::string& data_separator) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:129:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:147:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:153:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(std::istream& is, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:154:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void read(const std::string& path, DataSet& data_set) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:155:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(std::istream& is) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:156:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* read(const std::string& path) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:165:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(std::ostream& os, const DataSet& data_set) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.h:167:86: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:60:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception) : data_separator_(' '),
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:76:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::setMissingDataSymbol(const std::string& missing_data_symbol) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:87:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::setDataSeparator(const std::string& data_separator) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:134:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::read(std::istream& is, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:530:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::read(const std::string& path, DataSet& data_set) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:535:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* PopgenlibIO::read(std::istream& is) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:540:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
DataSet* PopgenlibIO::read(const std::string& path) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:545:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::write(std::ostream& os, const DataSet& data_set) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp:689:97: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PopgenlibIO::write(const std::string& path, const DataSet& data_set, bool overwrite) const throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:83:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void LocusInfo::addAlleleInfo(const AlleleInfo& allele) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:94:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AlleleInfo& LocusInfo::getAlleleInfoById(const std::string& id) const throw (AlleleNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:104:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AlleleInfo& LocusInfo::getAlleleInfoByKey(size_t key) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:112:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException)
^~~~~
[ 64%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp:49:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype::MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException) : allele_index_(0)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:59:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:75:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Date(const int day = 1, const int month = 1, const int year = 2000) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:103:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDate(const int day, const int month, const int year) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:117:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonth(const int month) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/Date.h:124:30: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setDay(const int day) throw (BadIntegerException);
^~~~~
[ 66%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/../MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:177:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date* getDate() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:205:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>* getCoord() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:220:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setX(const double x) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:230:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setY(const double y) throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:238:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getX() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:246:23: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double getY() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:260:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* getLocality() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:273:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:284:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:295:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:306:9: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:347:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.h:359:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getGenotype() const throw (NullPointerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:218:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Date* MultiSeqIndividual::getDate() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:266:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Point2D<double>* MultiSeqIndividual::getCoord() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:283:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void MultiSeqIndividual::setX(const double x) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:293:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void MultiSeqIndividual::setY(const double y) throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:303:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultiSeqIndividual::getX() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:313:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultiSeqIndividual::getY() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:331:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const Locality<double>* MultiSeqIndividual::getLocality() const throw (NullPointerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:349:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const VectorSequenceContainer* MultiSeqIndividual::getVectorSequenceContainer(const std::string& id) const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:366:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:385:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:409:7: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:460:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp:486:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* MultiSeqIndividual::getGenotype() const throw (NullPointerException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:45:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:50:133: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<MonolocusGenotype> MonolocusGenotypeTools::buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception)
^~~~~
[ 67%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/GeneralExceptions.cpp
[ 69%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp
[ 70%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp
[ 72%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:83:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void LocusInfo::addAlleleInfo(const AlleleInfo& allele) throw (BadIdentifierException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:94:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AlleleInfo& LocusInfo::getAlleleInfoById(const std::string& id) const throw (AlleleNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:104:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const AlleleInfo& LocusInfo::getAlleleInfoByKey(size_t key) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.cpp:112:1: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException)
^~~~~
[ 74%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:47:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype::MultilocusGenotype(size_t loci_number) throw (BadIntegerException) : loci_(vector<MonolocusGenotype*>(loci_number))
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:84:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:94:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:109:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:133:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void MultilocusGenotype::setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:142:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool MultilocusGenotype::isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:149:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& MultilocusGenotype::getMonolocusGenotype(size_t locus_position) const throw (IndexOutOfBoundsException)
^~~~~
[ 75%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp
[ 77%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp:49:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype::MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException) : allele_index_(0)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:99:149: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::vector<size_t> getAllelesIdsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:106:135: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t countGametesForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:113:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, size_t> getAllelesMapForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:121:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:128:138: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t countNonMissingForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:135:137: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t countBiAllelicForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:142:158: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, size_t> countHeterozygousForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:150:159: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getHeterozygousFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:159:130: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getHobsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:172:130: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getHexpForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:185:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getHnbForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:200:131: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getDnei72(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:222:131: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getDnei78(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:227:149: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, Fstats> getAllelesFstats(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:232:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFit(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:237:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFst(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:242:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFis(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:247:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, VarComp> getVarianceComponents(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (ZeroDivisionException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:253:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getWCMultilocusFst(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:259:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getWCMultilocusFis(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:267:164: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PermResults getWCMultilocusFstAndPerm(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, std::set<size_t> groups, int nb_perm) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:275:164: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PermResults getWCMultilocusFisAndPerm(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, std::set<size_t> groups, int nb_perm) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:282:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getRHMultilocusFst(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:289:200: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<DistanceMatrix> getDistanceMatrix(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups, std::string distance_methode) throw (Exception);
^~~~~
[ 79%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:56:160: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
vector<size_t> MultilocusGenotypeStatistics::getAllelesIdsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:70:151: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t MultilocusGenotypeStatistics::countGametesForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:90:165: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, size_t> MultilocusGenotypeStatistics::getAllelesMapForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:115:165: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:142:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t MultilocusGenotypeStatistics::countNonMissingForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:161:153: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t MultilocusGenotypeStatistics::countBiAllelicForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:181:169: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, size_t> MultilocusGenotypeStatistics::countHeterozygousForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:212:170: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getHeterozygousFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:251:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getHobsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:274:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getHexpForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:297:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getHnbForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:317:147: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getDnei72(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:362:147: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getDnei78(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:415:189: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, MultilocusGenotypeStatistics::Fstats> MultilocusGenotypeStatistics::getAllelesFstats(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:441:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFit(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:455:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFst(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:471:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFis(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:485:195: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, MultilocusGenotypeStatistics::VarComp> MultilocusGenotypeStatistics::getVarianceComponents(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (ZeroDivisionException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:576:157: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getWCMultilocusFst(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:607:157: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getWCMultilocusFis(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:637:205: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotypeStatistics::PermResults MultilocusGenotypeStatistics::getWCMultilocusFstAndPerm(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, set<size_t> groups, int nb_perm) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:667:205: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotypeStatistics::PermResults MultilocusGenotypeStatistics::getWCMultilocusFisAndPerm(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, set<size_t> groups, int nb_perm) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:697:157: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getRHMultilocusFst(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:735:206: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<DistanceMatrix> MultilocusGenotypeStatistics::getDistanceMatrix(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups, string distance_methode) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:113:101: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* PolymorphismMultiGContainer::getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:122:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* PolymorphismMultiGContainer::removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:134:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismMultiGContainer::deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:160:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismMultiGContainer::getNumberOfLoci() const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:171:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismMultiGContainer::getGroupId(size_t position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:180:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismMultiGContainer::setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:251:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string PolymorphismMultiGContainer::getGroupName(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:264:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismMultiGContainer::setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:45:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp:50:133: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<MonolocusGenotype> MonolocusGenotypeTools::buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception)
^~~~~
[ 80%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = double; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, double>, std::_Select1st<std::pair<const unsigned int, double> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 82%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = bpp::MultilocusGenotypeStatistics::Fstats; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = bpp::MultilocusGenotypeStatistics::VarComp; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, double>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, double> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, double>, std::_Select1st<std::pair<const unsigned int, double> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair<const unsigned int, double>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, double> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, double>, std::_Select1st<std::pair<const unsigned int, double> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_tree.h:63:0,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/stl_tree.h:63,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_tree.h:63:0,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/stl_tree.h:63,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_tree.h:63:0,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/stl_tree.h:63,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
[ 85%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp
[ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:47:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype::MultilocusGenotype(size_t loci_number) throw (BadIntegerException) : loci_(vector<MonolocusGenotype*>(loci_number))
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:84:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:94:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:109:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:133:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void MultilocusGenotype::setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:142:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool MultilocusGenotype::isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.cpp:149:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& MultilocusGenotype::getMonolocusGenotype(size_t locus_position) const throw (IndexOutOfBoundsException)
^~~~~
[ 88%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:197:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* PolymorphismSequenceContainer::removeSequence(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:209:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* PolymorphismSequenceContainer::removeSequence(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:223:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::deleteSequence(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:237:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::deleteSequence(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:251:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:268:150: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:295:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainer::getGroupId(size_t index) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:304:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainer::getGroupId(const std::string& name) const throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:330:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:339:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:370:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool PolymorphismSequenceContainer::isIngroupMember(size_t index) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:379:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool PolymorphismSequenceContainer::isIngroupMember(const std::string& name) const throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:393:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:402:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:417:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:426:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:441:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setSequenceCount(size_t index, unsigned int count) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:452:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setSequenceCount(const std::string& name, unsigned int count) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:470:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:479:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:493:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::decrementSequenceCount(size_t index) throw (IndexOutOfBoundsException, BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:504:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:522:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int PolymorphismSequenceContainer::getSequenceCount(size_t index) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:531:93: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int PolymorphismSequenceContainer::getSequenceCount(const std::string& name) const throw (SequenceNotFoundException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:40:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:113:101: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* PolymorphismMultiGContainer::getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:122:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* PolymorphismMultiGContainer::removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:134:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismMultiGContainer::deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:160:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismMultiGContainer::getNumberOfLoci() const throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:171:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismMultiGContainer::getGroupId(size_t position) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:180:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismMultiGContainer::setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:251:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string PolymorphismMultiGContainer::getGroupName(size_t group_id) const throw (GroupNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp:264:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismMultiGContainer::setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:57:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:43:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:99:149: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::vector<size_t> getAllelesIdsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:106:135: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t countGametesForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:113:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, size_t> getAllelesMapForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:121:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:128:138: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t countNonMissingForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:135:137: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t countBiAllelicForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:142:158: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, size_t> countHeterozygousForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:150:159: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getHeterozygousFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:159:130: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getHobsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:172:130: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getHexpForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:185:129: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getHnbForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:200:131: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getDnei72(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:222:131: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getDnei78(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:227:149: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, Fstats> getAllelesFstats(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:232:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFit(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:237:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFst(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:242:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, double> getAllelesFis(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:247:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::map<size_t, VarComp> getVarianceComponents(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const std::set<size_t>& groups) throw (ZeroDivisionException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:253:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getWCMultilocusFst(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:259:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getWCMultilocusFis(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:267:164: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PermResults getWCMultilocusFstAndPerm(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, std::set<size_t> groups, int nb_perm) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:275:164: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PermResults getWCMultilocusFisAndPerm(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, std::set<size_t> groups, int nb_perm) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:282:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static double getRHMultilocusFst(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.h:289:200: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<DistanceMatrix> getDistanceMatrix(const PolymorphismMultiGContainer& pmgc, std::vector<size_t> locus_positions, const std::set<size_t>& groups, std::string distance_methode) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:56:160: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
vector<size_t> MultilocusGenotypeStatistics::getAllelesIdsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:70:151: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t MultilocusGenotypeStatistics::countGametesForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:90:165: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, size_t> MultilocusGenotypeStatistics::getAllelesMapForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:115:165: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:142:154: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t MultilocusGenotypeStatistics::countNonMissingForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:161:153: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t MultilocusGenotypeStatistics::countBiAllelicForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:181:169: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, size_t> MultilocusGenotypeStatistics::countHeterozygousForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:212:170: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getHeterozygousFrqForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:251:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getHobsForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:274:146: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getHexpForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:297:145: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getHnbForGroups(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:317:147: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getDnei72(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:362:147: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getDnei78(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, size_t grp1, size_t grp2) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:415:189: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, MultilocusGenotypeStatistics::Fstats> MultilocusGenotypeStatistics::getAllelesFstats(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:441:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFit(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:455:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFst(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:471:156: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, double> MultilocusGenotypeStatistics::getAllelesFis(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:485:195: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
map<size_t, MultilocusGenotypeStatistics::VarComp> MultilocusGenotypeStatistics::getVarianceComponents(const PolymorphismMultiGContainer& pmgc, size_t locus_position, const set<size_t>& groups) throw (ZeroDivisionException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:576:157: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getWCMultilocusFst(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:607:157: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getWCMultilocusFis(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:637:205: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotypeStatistics::PermResults MultilocusGenotypeStatistics::getWCMultilocusFstAndPerm(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, set<size_t> groups, int nb_perm) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:667:205: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotypeStatistics::PermResults MultilocusGenotypeStatistics::getWCMultilocusFisAndPerm(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, set<size_t> groups, int nb_perm) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:697:157: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
double MultilocusGenotypeStatistics::getRHMultilocusFst(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:735:206: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::unique_ptr<DistanceMatrix> MultilocusGenotypeStatistics::getDistanceMatrix(const PolymorphismMultiGContainer& pmgc, vector<size_t> locus_positions, const set<size_t>& groups, string distance_methode) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:51:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonolocusGenotypeTools.h:75:118: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static std::unique_ptr<MonolocusGenotype> buildMonolocusGenotypeByAlleleKey(const std::vector<size_t> allele_keys) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:52:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.h:75:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
BiAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:53:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.h:71:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MonoAlleleMonolocusGenotype(std::vector<size_t> allele_index) throw (BadSizeException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:54:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:116:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (BadIdentifierException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:124:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/LocusInfo.h:140:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (AlleleNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:77:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype(size_t loci_number) throw (BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:94:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MonolocusGenotype& monogen) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:103:80: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<size_t>& allele_keys) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:112:111: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const std::vector<std::string>& allele_id, const LocusInfo& locus_info) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:49:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:119:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setMonolocusGenotypeAsMissing(size_t locus_position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:126:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isMonolocusGenotypeMissing(size_t locus_position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotype.h:132:3: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
throw (IndexOutOfBoundsException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.h:48:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:107:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
const MultilocusGenotype* getMultilocusGenotype(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:114:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
MultilocusGenotype* removeMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:121:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteMultilocusGenotype(size_t position) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:133:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getNumberOfLoci() const throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:140:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t position) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:147:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t position, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
std::string getGroupName(size_t group_id) const throw (GroupNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismMultiGContainer.h:182:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupName(size_t group_id, std::string name) throw (GroupNotFoundException);
^~~~~
[ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = double; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, double>, std::_Select1st<std::pair<const unsigned int, double> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = bpp::MultilocusGenotypeStatistics::Fstats; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = bpp::MultilocusGenotypeStatistics::VarComp; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 91%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, double>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, double> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, double>, std::_Select1st<std::pair<const unsigned int, double> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair<const unsigned int, double>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, double> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, double>, std::_Select1st<std::pair<const unsigned int, double> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 93%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::Fstats> >}' changed in GCC 7.1
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp>, std::_Select1st<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, bpp::MultilocusGenotypeStatistics::VarComp> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:331:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
std::__uninitialized_copy_a(__x.begin(), __x.end(),
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
this->_M_impl._M_start,
~~~~~~~~~~~~~~~~~~~~~~~
_M_get_Tp_allocator());
~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:42:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_tree.h:63:0,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/stl_tree.h:63,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Utils/MapTools.h:44,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_tree.h:63:0,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:456:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__result));
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:61:0,
from /usr/include/c++/7/bits/stl_tree.h:63,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/cpp_type_traits.h: In function '_Iterator std::__miter_base(_Iterator) [with _Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >]':
/usr/include/c++/7/bits/cpp_type_traits.h:408:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__miter_base(_Iterator __it)
^~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_tree.h:63:0,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__copy_move_a2(_II __first, _II __last, _OI __result)
^~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:420:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/stl_tree.h:63,
from /usr/include/c++/7/map:60,
from /usr/include/Bpp/Utils/MapTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp:41:
/usr/include/c++/7/bits/stl_iterator.h: In function '_Iterator std::__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container>) [with _Iterator = const double*; _Container = std::vector<double, std::allocator<double> >]':
/usr/include/c++/7/bits/stl_iterator.h:983:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
__niter_base(__gnu_cxx::__normal_iterator<_Iterator, _Container> __it)
^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:197:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* PolymorphismSequenceContainer::removeSequence(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:209:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* PolymorphismSequenceContainer::removeSequence(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:223:66: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::deleteSequence(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:237:77: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::deleteSequence(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:251:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:268:150: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:295:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainer::getGroupId(size_t index) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:304:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainer::getGroupId(const std::string& name) const throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:330:79: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:339:90: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:370:73: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool PolymorphismSequenceContainer::isIngroupMember(size_t index) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:379:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool PolymorphismSequenceContainer::isIngroupMember(const std::string& name) const throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:393:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:402:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:417:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:426:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:441:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setSequenceCount(size_t index, unsigned int count) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:452:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::setSequenceCount(const std::string& name, unsigned int count) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:470:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:479:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:493:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::decrementSequenceCount(size_t index) throw (IndexOutOfBoundsException, BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:504:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void PolymorphismSequenceContainer::decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:522:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int PolymorphismSequenceContainer::getSequenceCount(size_t index) const throw (IndexOutOfBoundsException)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp:531:93: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int PolymorphismSequenceContainer::getSequenceCount(const std::string& name) const throw (SequenceNotFoundException)
^~~~~
[ 95%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:89:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* read(const std::string& path, const Alphabet* alpha) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:98:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractIngroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:107:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractOutgroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:117:113: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractGroup(const PolymorphismSequenceContainer& psc, size_t group_id) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:152:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfNonGapSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:163:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfCompleteSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:52:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::read(const std::string& path, const Alphabet* alpha) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:105:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::extractIngroup (const PolymorphismSequenceContainer& psc) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:128:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::extractOutgroup(const PolymorphismSequenceContainer& psc) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:151:140: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::extractGroup(const PolymorphismSequenceContainer& psc, size_t group_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:235:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainerTools::getNumberOfNonGapSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:265:125: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainerTools::getNumberOfCompleteSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception)
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:55:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:55:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:44:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:89:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* read(const std::string& path, const Alphabet* alpha) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:98:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractIngroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:107:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractOutgroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:117:113: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractGroup(const PolymorphismSequenceContainer& psc, size_t group_id) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:44:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:152:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfNonGapSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:163:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfCompleteSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:60:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:89:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* read(const std::string& path, const Alphabet* alpha) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:98:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractIngroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:107:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractOutgroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:117:113: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractGroup(const PolymorphismSequenceContainer& psc, size_t group_id) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:41:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:152:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfNonGapSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:163:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfCompleteSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:52:121: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::read(const std::string& path, const Alphabet* alpha) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:105:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::extractIngroup (const PolymorphismSequenceContainer& psc) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:128:126: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::extractOutgroup(const PolymorphismSequenceContainer& psc) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:151:140: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
PolymorphismSequenceContainer* PolymorphismSequenceContainerTools::extractGroup(const PolymorphismSequenceContainer& psc, size_t group_id) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:235:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainerTools::getNumberOfNonGapSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception)
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp:265:125: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t PolymorphismSequenceContainerTools::getNumberOfCompleteSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception)
^~~~~
[ 96%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_popgen_shared_EXPORTS -I/<<PKGBUILDDIR>>/src -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -fPIC -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:55:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:193:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:200:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
Sequence* removeSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:207:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:214:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void deleteSequence(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:223:106: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:55:0,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:224:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequenceWithFrequency(const Sequence& sequence, size_t sequenceIndex, unsigned int frequency, bool checkName = true) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:225:69: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:228:91: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void addSequence(const Sequence& sequence, size_t sequenceIndex, bool checkName = true) throw (Exception) {
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:242:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:249:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
size_t getGroupId(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:261:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(size_t index, size_t group_id) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:268:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setGroupId(const std::string& name, size_t group_id) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:285:44: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:292:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
bool isIngroupMember(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:299:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:306:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsIngroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:313:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:320:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setAsOutgroupMember(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:328:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(size_t index, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:336:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void setSequenceCount(const std::string& name, unsigned int count) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:343:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(size_t index) throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:350:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void incrementSequenceCount(const std::string& name) throw (SequenceNotFoundException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:358:45: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(size_t index) throw(IndexOutOfBoundsException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:366:56: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void decrementSequenceCount(const std::string& name) throw (SequenceNotFoundException, BadIntegerException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:373:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(size_t index) const throw (IndexOutOfBoundsException);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainer.h:380:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
unsigned int getSequenceCount(const std::string& name) const throw (SequenceNotFoundException);
^~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:44:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:89:94: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* read(const std::string& path, const Alphabet* alpha) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:98:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractIngroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:107:99: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractOutgroup(const PolymorphismSequenceContainer& psc) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:117:113: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static PolymorphismSequenceContainer* extractGroup(const PolymorphismSequenceContainer& psc, size_t group_id) throw (Exception);
^~~~~
In file included from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:44:0:
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:152:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfNonGapSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
/<<PKGBUILDDIR>>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.h:163:98: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
static size_t getNumberOfCompleteSites(const PolymorphismSequenceContainer& psc, bool ingroup) throw (Exception);
^~~~~
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[ 98%] Linking CXX static library libbpp-popgen.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1
/usr/bin/ar qc libbpp-popgen.a CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o
/usr/bin/ranlib libbpp-popgen.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 98%] Built target bpp-popgen-static
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = double*; _ForwardIterator = double*; _Allocator = std::allocator<double>]':
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/Bpp/Seq/SymbolListTools.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, double> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:63:0,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*; _Tp = double]':
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<double*>; _ForwardIterator = double*]':
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_algobase.h: In function '_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<double*>; _OI = double*]':
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/string:40,
from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:44,
from /usr/include/Bpp/Seq/SymbolList.h:43,
from /usr/include/Bpp/Seq/SymbolListTools.h:43,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.h:48,
from /<<PKGBUILDDIR>>/src/Bpp/PopGen/SequenceStatistics.cpp:43:
/usr/include/c++/7/bits/stl_iterator.h: In function 'decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = double*]':
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type 'std::move_iterator<double*>' changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
[100%] Linking CXX shared library libbpp-popgen.so
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.7 -o libbpp-popgen.so.7.0.0 CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.11.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.3.0.0
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.7.0.0 libbpp-popgen.so.7 libbpp-popgen.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target bpp-popgen-shared
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend
make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-popgen-static.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/CMakeFiles/bpp-popgen-shared.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 62%] Built target bpp-popgen-static
[100%] Built target bpp-popgen-shared
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-config.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-config-version.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.7.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.7
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-targets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-targets-none.cmake
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libbpp-core-dev package exists.
--> libbpp-seq-dev package exists.
set -e
install -d -m 755 debian/libbpp-popgen-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbpp-popgen7/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.7 debian/libbpp-popgen7/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.7.0.0 debian/libbpp-popgen7/usr/lib/arm-linux-gnueabihf
PKGDEV=libbpp-popgen-dev
PKGSHL=libbpp-popgen7
install -d -m 755 debian/libbpp-popgen-dev/usr/include
mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include
install -d -m 755 debian/libbpp-popgen-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-popgen-dev/usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-popgen7/usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.7.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package libbpp-popgen-dev: unused substitution variable ${devlibs:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'libbpp-popgen-dev' in '../libbpp-popgen-dev_2.3.1-5_armhf.deb'.
dpkg-deb: building package 'libbpp-popgen7' in '../libbpp-popgen7_2.3.1-5_armhf.deb'.
dpkg-deb: building package 'libbpp-popgen7-dbgsym' in '../libbpp-popgen7-dbgsym_2.3.1-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../libbpp-popgen_2.3.1-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build libbpp-popgen-2.3.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-08-31T12:44:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libbpp-popgen_2.3.1-5_armhf.changes:
------------------------------------
Format: 1.8
Date: Thu, 24 Aug 2017 21:29:25 +0200
Source: libbpp-popgen
Binary: libbpp-popgen-dev libbpp-popgen7
Architecture: armhf
Version: 2.3.1-5
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libbpp-popgen-dev - Bio++ Population Genetics library development files
libbpp-popgen7 - Bio++ Population Genetics library
Changes:
libbpp-popgen (2.3.1-5) unstable; urgency=medium
.
* Rebuild with gcc-7
* Standards-Version: 4.1.0
Checksums-Sha1:
7147a690b6d44f3365ddba169e65431e65595a3d 616644 libbpp-popgen-dev_2.3.1-5_armhf.deb
131f944bec6695db06e9826b9837f89cfd305e60 87332 libbpp-popgen7-dbgsym_2.3.1-5_armhf.deb
5bd0baa7972c045ffecf8b80d95b7456f883f809 251130 libbpp-popgen7_2.3.1-5_armhf.deb
b151ae590a2303cb79056935ae097da0e53211ed 6224 libbpp-popgen_2.3.1-5_armhf.buildinfo
Checksums-Sha256:
717e6bfb8a61fb5100d3e62721216dabf092746d9a4d50e8c503f728a0544472 616644 libbpp-popgen-dev_2.3.1-5_armhf.deb
0a7410df035f7c2b398e2dfc2848e3d4406b00962b2673fc9e793d030461a32f 87332 libbpp-popgen7-dbgsym_2.3.1-5_armhf.deb
bc83e2b5185a6d1c52adccf11020cf3934c9c5157064da46c7b2b33d3dd5076f 251130 libbpp-popgen7_2.3.1-5_armhf.deb
e827857234ac3c9c021f9698b1f7c9c55cb753f5b5239ce79e7e3f6525a8f3ea 6224 libbpp-popgen_2.3.1-5_armhf.buildinfo
Files:
81a33f54d42116532a5cec5055b78e3b 616644 libdevel optional libbpp-popgen-dev_2.3.1-5_armhf.deb
4a86e4bb6d657c2cd2882eea934adcde 87332 debug extra libbpp-popgen7-dbgsym_2.3.1-5_armhf.deb
cb9ab5718bbffb66acf018176273782f 251130 libs optional libbpp-popgen7_2.3.1-5_armhf.deb
58b5853b3410567e3f70bee2d00aa8dc 6224 science optional libbpp-popgen_2.3.1-5_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libbpp-popgen-dev_2.3.1-5_armhf.deb
-----------------------------------
new debian package, version 2.0.
size 616644 bytes: control archive=2060 bytes.
907 bytes, 19 lines control
3714 bytes, 44 lines md5sums
Package: libbpp-popgen-dev
Source: libbpp-popgen
Version: 2.3.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 7645
Depends: libbpp-popgen7 (= 2.3.1-5), libbpp-core-dev (>= 2.3.1), libbpp-seq-dev (>= 2.3.1)
Section: libdevel
Priority: optional
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Population Genetics library development files
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the static library and the header files of the
Bio++ Population Genetics classes.
drwxr-xr-x root/root 0 2017-08-24 19:29 ./
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/PopGen/
-rw-r--r-- root/root 2638 2017-06-08 16:59 ./usr/include/Bpp/PopGen/AlleleInfo.h
-rw-r--r-- root/root 3212 2017-06-08 16:59 ./usr/include/Bpp/PopGen/BasicAlleleInfo.h
-rw-r--r-- root/root 3664 2017-06-08 16:59 ./usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/PopGen/DataSet/
-rw-r--r-- root/root 5077 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h
-rw-r--r-- root/root 3806 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h
-rw-r--r-- root/root 27312 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/DataSet.h
-rw-r--r-- root/root 2659 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/DataSetTools.h
-rw-r--r-- root/root 4877 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Date.h
-rw-r--r-- root/root 18156 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Group.h
-rw-r--r-- root/root 14388 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Individual.h
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/PopGen/DataSet/Io/
-rw-r--r-- root/root 2532 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h
-rw-r--r-- root/root 2394 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/PopGen/DataSet/Io/Darwin/
-rw-r--r-- root/root 2817 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h
-rw-r--r-- root/root 2982 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/
-rw-r--r-- root/root 5756 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/PopGen/DataSet/Io/Genepop/
-rw-r--r-- root/root 2934 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/include/Bpp/PopGen/DataSet/Io/Genetix/
-rw-r--r-- root/root 2947 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h
-rw-r--r-- root/root 2633 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h
-rw-r--r-- root/root 2438 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h
-rw-r--r-- root/root 2414 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h
-rw-r--r-- root/root 5939 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h
-rw-r--r-- root/root 3707 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/Locality.h
-rw-r--r-- root/root 10802 2017-06-08 16:59 ./usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h
-rw-r--r-- root/root 8100 2017-06-08 16:59 ./usr/include/Bpp/PopGen/GeneralExceptions.h
-rw-r--r-- root/root 4291 2017-06-08 16:59 ./usr/include/Bpp/PopGen/LocusInfo.h
-rw-r--r-- root/root 3307 2017-06-08 16:59 ./usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h
-rw-r--r-- root/root 2835 2017-06-08 16:59 ./usr/include/Bpp/PopGen/MonolocusGenotype.h
-rw-r--r-- root/root 2979 2017-06-08 16:59 ./usr/include/Bpp/PopGen/MonolocusGenotypeTools.h
-rw-r--r-- root/root 3554 2017-06-08 16:59 ./usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h
-rw-r--r-- root/root 4946 2017-06-08 16:59 ./usr/include/Bpp/PopGen/MultilocusGenotype.h
-rw-r--r-- root/root 13761 2017-06-08 16:59 ./usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h
-rw-r--r-- root/root 5994 2017-06-08 16:59 ./usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h
-rw-r--r-- root/root 4735 2017-06-08 16:59 ./usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h
-rw-r--r-- root/root 14261 2017-06-08 16:59 ./usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h
-rw-r--r-- root/root 10297 2017-06-08 16:59 ./usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h
-rw-r--r-- root/root 45403 2017-06-08 16:59 ./usr/include/Bpp/PopGen/SequenceStatistics.h
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/
-rw-r--r-- root/root 1607 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-config-version.cmake
-rw-r--r-- root/root 2288 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-config.cmake
-rw-r--r-- root/root 1542 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-targets-none.cmake
-rw-r--r-- root/root 3961 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-popgen/bpp-popgen-targets.cmake
-rw-r--r-- root/root 7512950 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/libbpp-popgen.a
lrwxrwxrwx root/root 0 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/libbpp-popgen.so -> libbpp-popgen.so.7
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/doc/libbpp-popgen-dev/
-rw-r--r-- root/root 1104 2017-08-24 19:29 ./usr/share/doc/libbpp-popgen-dev/changelog.Debian.gz
-rw-r--r-- root/root 1459 2017-06-08 16:59 ./usr/share/doc/libbpp-popgen-dev/changelog.gz
-rw-r--r-- root/root 3118 2017-08-24 19:29 ./usr/share/doc/libbpp-popgen-dev/copyright
libbpp-popgen7-dbgsym_2.3.1-5_armhf.deb
---------------------------------------
new debian package, version 2.0.
size 87332 bytes: control archive=472 bytes.
411 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbpp-popgen7-dbgsym
Source: libbpp-popgen
Version: 2.3.1-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 688
Depends: libbpp-popgen7 (= 2.3.1-5)
Section: debug
Priority: extra
Multi-Arch: same
Description: Debug symbols for libbpp-popgen7
Build-Ids: 5c62332ce656bf63f909270e817dd68f8bc27edb
drwxr-xr-x root/root 0 2017-08-24 19:29 ./
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/debug/.build-id/5c/
-rw-r--r-- root/root 693444 2017-08-24 19:29 ./usr/lib/debug/.build-id/5c/62332ce656bf63f909270e817dd68f8bc27edb.debug
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-08-24 19:29 ./usr/share/doc/libbpp-popgen7-dbgsym -> libbpp-popgen7
libbpp-popgen7_2.3.1-5_armhf.deb
--------------------------------
new debian package, version 2.0.
size 251130 bytes: control archive=950 bytes.
881 bytes, 20 lines control
317 bytes, 4 lines md5sums
31 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libbpp-popgen7
Source: libbpp-popgen
Version: 2.3.1-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1421
Depends: libbpp-core3, libbpp-seq11, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
Description: Bio++ Population Genetics library
Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.
Bio++ is Object Oriented and is designed to be both easy to use and
computer efficient. Bio++ intends to help programmers to write computer
expensive programs, by providing them a set of re-usable tools.
.
This package contains the dynamic library of the Bio++ Population
Genetics classes.
drwxr-xr-x root/root 0 2017-08-24 19:29 ./
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.7 -> libbpp-popgen.so.7.0.0
-rw-r--r-- root/root 1435052 2017-08-24 19:29 ./usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.7.0.0
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-08-24 19:29 ./usr/share/doc/libbpp-popgen7/
-rw-r--r-- root/root 1104 2017-08-24 19:29 ./usr/share/doc/libbpp-popgen7/changelog.Debian.gz
-rw-r--r-- root/root 1459 2017-06-08 16:59 ./usr/share/doc/libbpp-popgen7/changelog.gz
-rw-r--r-- root/root 3118 2017-08-24 19:29 ./usr/share/doc/libbpp-popgen7/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 35712
Build-Time: 97
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 317
Job: libbpp-popgen_2.3.1-5
Machine Architecture: armhf
Package: libbpp-popgen
Package-Time: 434
Source-Version: 2.3.1-5
Space: 35712
Status: successful
Version: 2.3.1-5
--------------------------------------------------------------------------------
Finished at 2017-08-31T12:44:33Z
Build needed 00:07:14, 35712k disk space