Raspbian Package Auto-Building

Build log for kleborate (1.0.0-3) on armhf

kleborate1.0.0-3armhf → 2020-08-15 04:50:09

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| kleborate 1.0.0-3 (armhf)                    Sat, 15 Aug 2020 04:33:43 +0000 |
+==============================================================================+

Package: kleborate
Version: 1.0.0-3
Source Version: 1.0.0-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-23937532-cef9-4edc-99f7-f1d103e5072d' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 26s (963 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'kleborate' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kleborate.git
Please use:
git clone https://salsa.debian.org/med-team/kleborate.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 88.6 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main kleborate 1.0.0-3 (dsc) [2162 B]
Get:2 http://172.17.0.1/private bullseye-staging/main kleborate 1.0.0-3 (tar) [82.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main kleborate 1.0.0-3 (diff) [5995 kB]
Fetched 88.6 MB in 7s (12.2 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kleborate-DSbaNn/kleborate-1.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kleborate-DSbaNn' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-NhK5Dd/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-NhK5Dd/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Packages [428 B]
Fetched 2104 B in 1s (2829 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (20.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12556 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive
dpkg-deb: building package 'sbuild-build-depends-kleborate-dummy' in '/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive/sbuild-build-depends-kleborate-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-kleborate-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Sources [543 B]
Get:5 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ Packages [612 B]
Fetched 2488 B in 1s (3182 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install kleborate build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base
  intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcapnp-0.7.0 libcroco3 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libgsl25 libgslcblas0 libicu67 libimagequant0 libjbig0 libjpeg62-turbo
  liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3
  libmbedtls12 libmbedx509-0 libmurmurhash2 libpipeline1 libpng16-16
  libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2
  libssl1.1 libsub-override-perl libtiff5 libtool libuchardet0 libwebp6
  libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 man-db mash
  mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython
  python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil
  python3-pkg-resources python3-reportlab python3-reportlab-accel
  python3-setuptools python3.8 python3.8-minimal
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff kaptive-data kaptive-example
  gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html liblcms2-utils
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa
  clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml
  prank probcons python3-mysqldb python3-matplotlib python3-mmtf
  python3-rdflib python3-renderpm python3-psycopg2 python3-scipy raxml
  samtools t-coffee wise w3-dtd-mathml gfortran python-numpy-doc python3-dev
  python3-pytest python3-numpy-dbg python-pil-doc python3-pil-dbg pdf-viewer
  python3-egenix-mxtexttools python-reportlab-doc python-setuptools-doc
  python3.8-venv python3.8-doc binfmt-support
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc
  python3-olefile python3-renderpm
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-python
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base
  intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0
  libcapnp-0.7.0 libcroco3 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libgsl25 libgslcblas0 libicu67 libimagequant0 libjbig0 libjpeg62-turbo
  liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3
  libmbedtls12 libmbedx509-0 libmurmurhash2 libpipeline1 libpng16-16
  libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2
  libssl1.1 libsub-override-perl libtiff5 libtool libuchardet0 libwebp6
  libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 man-db mash
  mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython
  python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil
  python3-pkg-resources python3-reportlab python3-reportlab-accel
  python3-setuptools python3.8 python3.8-minimal
  sbuild-build-depends-kleborate-dummy
0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded.
Need to get 48.7 MB/49.9 MB of archives.
After this operation, 211 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-NhK5Dd/apt_archive ./ sbuild-build-depends-kleborate-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.5-2 [752 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.5-2 [1628 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.5-2 [1677 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.5-2 [420 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-3 [801 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2 [187 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.180-1 [162 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.4-1 [1159 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-3 [8287 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2 [1007 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.5-1 [78.4 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.5-1 [145 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-6+rpi1 [232 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 46.1.3-1 [183 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.18.4-1 [3037 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab-accel armhf 3.5.44-1 [36.0 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-7 [258 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-3 [347 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 7.2.0-1 [401 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab all 3.5.44-1 [569 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf python3-biopython armhf 1.77+dfsg-3 [1388 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf ncbi-data all 6.1.20170106+dfsg1-8 [3552 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf liblmdb0 armhf 0.9.24-1 [38.7 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libmbedcrypto3 armhf 2.16.5-1 [194 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libmbedx509-0 armhf 2.16.5-1 [100 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libmbedtls12 armhf 2.16.5-1 [126 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf ncbi-blast+ armhf 2.10.0-1+b2 [9254 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf kaptive all 0.7.0-2 [30.6 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libcapnp-0.7.0 armhf 0.7.0-7 [909 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libmurmurhash2 armhf 1.5-2 [5892 B]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf mash armhf 2.2.2+dfsg-1+b1 [123 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 46.1.3-1 [382 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 48.7 MB in 4s (11.9 MB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12556 files and directories currently installed.)
Preparing to unpack .../0-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../1-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
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Preparing to unpack .../2-libpipeline1_1.5.2-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.2-2) ...
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Preparing to unpack .../3-man-db_2.9.3-2_armhf.deb ...
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Unpacking libssl1.1:armhf (1.1.1g-1) ...
Selecting previously unselected package libpython3.8-minimal:armhf.
Preparing to unpack .../5-libpython3.8-minimal_3.8.5-2_armhf.deb ...
Unpacking libpython3.8-minimal:armhf (3.8.5-2) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../6-libexpat1_2.2.9-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.9-1) ...
Selecting previously unselected package python3.8-minimal.
Preparing to unpack .../7-python3.8-minimal_3.8.5-2_armhf.deb ...
Unpacking python3.8-minimal (3.8.5-2) ...
Setting up libssl1.1:armhf (1.1.1g-1) ...
Setting up libpython3.8-minimal:armhf (3.8.5-2) ...
Setting up libexpat1:armhf (2.2.9-1) ...
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W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35-1+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.1.0-6+rpi1 gcc-10_10.1.0-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-1+b1 aptitude-common_0.8.13-1 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1+rpi1 binutils-arm-linux-gnueabihf_2.35-1+rpi1 binutils-common_2.35-1+rpi1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.1.0-6+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1+rpi1 g++-10_10.1.0-6+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.1.0-6+rpi1 gcc-10-base_10.1.0-6+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1 gcc-8-base_8.4.0-4+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 kaptive_0.7.0-2 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.1.0-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.1.0-6+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-1+rpi1 libblas3_3.9.0-3 libblkid1_2.36-2 libboost-iostreams1.71.0_1.71.0-6+b1 libbrotli1_1.0.7-7 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.42-2 libcap2-bin_1:2.42-2 libcapnp-0.7.0_0.7.0-7 libcc1-0_10.1.0-6+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1+rpi1 libctf0_2.35-1+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdpkg-perl_1.20.5+rpi1 libelf1_0.180-1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libfreetype6_2.10.2+dfsg-3 libgcc-10-dev_10.1.0-6+rpi1 libgcc-s1_10.1.0-6+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.1.0-6+rpi1 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.1.0-6+rpi1 libgpg-error0_1.38-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libimagequant0_2.12.2-1.1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-1.1 libksba8_1.4.0-2 liblapack3_3.9.0-3 liblcms2-2_2.9-4 libldap-2.4-2_2.4.50+dfsg-1+b1 libldap-common_2.4.50+dfsg-1 liblmdb0_0.9.24-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmbedcrypto3_2.16.5-1 libmbedtls12_2.16.5-1 libmbedx509-0_2.16.5-1 libmount1_2.36-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmurmurhash2_1.5-2 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1 libpam-cap_1:2.42-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libpng16-16_1.6.37-2 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.5-2 libpython3.8-stdlib_3.8.5-2 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-2 libsqlite3-0_3.32.3-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.1.0-6+rpi1 libstdc++6_10.1.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.6-2+rpi1+b1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtiff5_4.1.0+git191117-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-6+rpi1 libuchardet0_0.0.7-1 libudev1_245.6-2+rpi1+b1 libunistring2_0.9.10-4 libuuid1_2.36-2 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxapian30_1.4.15-1 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mash_2.2.2+dfsg-1+b1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-2 ncbi-blast+_2.10.0-1+b2 ncbi-data_6.1.20170106+dfsg1-8 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.8.2-3 python3-biopython_1.77+dfsg-3 python3-distutils_3.8.5-1 python3-lib2to3_3.8.5-1 python3-minimal_3.8.2-3 python3-numpy_1:1.18.4-1 python3-pil_7.2.0-1 python3-pkg-resources_46.1.3-1 python3-reportlab_3.5.44-1 python3-reportlab-accel_3.5.44-1 python3-setuptools_46.1.3-1 python3.8_3.8.5-2 python3.8-minimal_3.8.5-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kleborate-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.3G8cmF7a/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 27 12:17:16 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./kleborate_1.0.0-3.dsc
dpkg-source: info: extracting kleborate in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking kleborate_1.0.0.orig.tar.gz
dpkg-source: info: unpacking kleborate_1.0.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python3.patch
dpkg-source: info: applying use_debian_installed_kaptive.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-23937532-cef9-4edc-99f7-f1d103e5072d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package kleborate
dpkg-buildpackage: info: source version 1.0.0-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build' (and everything under it)
/usr/lib/python3/dist-packages/setuptools/dist.py:454: UserWarning: Normalizing '0.4.0-beta' to '0.4.0b0'
  warnings.warn(tmpl.format(**locals()))
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config 
running config
/usr/lib/python3/dist-packages/setuptools/dist.py:454: UserWarning: Normalizing '0.4.0-beta' to '0.4.0b0'
  warnings.warn(tmpl.format(**locals()))
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/blastn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/contig_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/kleborate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/mlstBLAST.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/resBLAST.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/rmpA.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/truncation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
copying kleborate/kaptive.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate
/usr/lib/python3/dist-packages/setuptools/dist.py:454: UserWarning: Normalizing '0.4.0-beta' to '0.4.0b0'
  warnings.warn(tmpl.format(**locals()))
package init file 'kaptive/__init__.py' not found (or not a regular file)
running egg_info
creating Kleborate.egg-info
writing Kleborate.egg-info/PKG-INFO
writing dependency_links to Kleborate.egg-info/dependency_links.txt
writing entry points to Kleborate.egg-info/entry_points.txt
writing top-level names to Kleborate.egg-info/top_level.txt
writing manifest file 'Kleborate.egg-info/SOURCES.txt'
reading manifest file 'Kleborate.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'kaptive/reference_database'
warning: no directories found matching 'kaptive/sample_data'
writing manifest file 'Kleborate.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp1.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp10.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp11.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp12.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp13.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp14.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp2.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp3.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp4.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp5.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp6.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp7.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp8.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp9.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/ICEKp_references
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/ARGannot_clustered80_r3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/ARGannot_r3.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/AbST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/CbST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/Klebsiella_pneumoniae.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/MgrB_and_PmrB.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/OmpK.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/QRDR_120.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/SmST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/YbST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/clb_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/hypermucoidy.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/hypermucoidy_rmpA.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/iro_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/iuc_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/kpneumoniae.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/species_mash_sketches.msh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/wzi.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/wzi.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
copying kleborate/data/ybt_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; python3.8 -m unittest discover -v 
test_ambiguous_bases_1 (test.test_contig_stats.TestContigStats) ... ok
test_ambiguous_bases_2 (test.test_contig_stats.TestContigStats) ... ok
test_ambiguous_bases_3 (test.test_contig_stats.TestContigStats) ... ok
test_ambiguous_bases_4 (test.test_contig_stats.TestContigStats) ... ok
test_count_1 (test.test_contig_stats.TestContigStats) ... ok
test_count_2 (test.test_contig_stats.TestContigStats) ... ok
test_longest_1 (test.test_contig_stats.TestContigStats) ... ok
test_longest_2 (test.test_contig_stats.TestContigStats) ... ok
test_n50_1 (test.test_contig_stats.TestContigStats) ... ok
test_n50_2 (test.test_contig_stats.TestContigStats) ... ok
test_AS7 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_000009885 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_000968155 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_001068035 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_002108345 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_002247645 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_002248955 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_003095495 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_003345475 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_003400925 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_004010735 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_GCF_900501255 (test.test_genomes.TestGenomes) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_iro_exact (test.test_iro.TestIro)
This test is an exact match for SmST33. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_iro_incomplete (test.test_iro.TestIro)
This test is an exact match for only one allele. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_iro_inexact (test.test_iro.TestIro)
This test is an inexact match for SmST33. There are single base changes in iroC and in ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_iro_novel (test.test_iro.TestIro)
This test is an exact match for alleles, but an unknown combination. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_iro_random (test.test_iro.TestIro)
This test has just random sequence and should give no iro call. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_134 (test.test_mlst.TestMlst) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_83 (test.test_mlst.TestMlst) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ba779 (test.test_mlst.TestMlst) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_chromosome_exact (test.test_mlst.TestMlst)
This test is an exact match for ST23. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_chromosome_inexact (test.test_mlst.TestMlst)
This test is is one base off from ST23 (single substitution in mdh_1 of G to A). ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_chromosome_random (test.test_mlst.TestMlst)
This test has just random sequence and should give no MLST call. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ozanae (test.test_mlst.TestMlst) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_rhinoscleromatis (test.test_mlst.TestMlst) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_unknown_ST (test.test_mlst.TestMlst)
This test has exact matches for alleles but in an unknown ST combination ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_01 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_02 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_03 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_04 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_05 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_06 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_07 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_08 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_09 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_res_10 (test.test_res_alleles.TestResAlleles) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
Setting the Kp complex variable to False should turn off the MgrB/PmrB tests. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
This tests an early stop mutation (without a frameshift) in pmrB. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
A frameshift in pmrB should cause an early stop and lead to a colisitin resistance call. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_both_genes_intact (test.test_res_omp.TestResOmp) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ompk35_early_stop (test.test_res_omp.TestResOmp)
This tests an early stop mutation (without a frameshift) in OmpK35. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ompk35_frameshift (test.test_res_omp.TestResOmp)
A frameshift in OmpK35 should cause an early stop and lead to a carbapenem resistance call. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ompk36_missing (test.test_res_omp.TestResOmp) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ompk36gd (test.test_res_omp.TestResOmp) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ompk36td (test.test_res_omp.TestResOmp) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp)
Setting the Kp complex variable to False should turn off the OmpK tests. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_gyra (test.test_res_qrdr.TestResGyrAParC) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC)
Setting the Kp complex variable to False should turn off the QRDR tests. ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_no_mutations (test.test_res_qrdr.TestResGyrAParC) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_parc (test.test_res_qrdr.TestResGyrAParC) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_tem (test.test_res_tem.TestResTem) ... Error: mdb_env_open: Cannot allocate memory
ERROR
test_citrobacter (test.test_species.TestKpComplex) ... ok
test_klebsiella_aerogenes (test.test_species.TestKpComplex) ... ok
test_klebsiella_africanensis (test.test_species.TestKpComplex) ... ok
test_klebsiella_grimontii (test.test_species.TestKpComplex) ... ok
test_klebsiella_michiganensis (test.test_species.TestKpComplex) ... ok
test_klebsiella_oxytoca (test.test_species.TestKpComplex) ... ok
test_klebsiella_pneumoniae (test.test_species.TestKpComplex) ... ok
test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestKpComplex) ... ok
test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestKpComplex) ... ok
test_klebsiella_quasivariicola (test.test_species.TestKpComplex) ... ok
test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestKpComplex) ... ok
test_klebsiella_variicola_subsp_variicola (test.test_species.TestKpComplex) ... ok
test_raoultella_ornithinolytica (test.test_species.TestKpComplex) ... ok
test_raoultella_planticola (test.test_species.TestKpComplex) ... ok
test_raoultella_terrigena (test.test_species.TestKpComplex) ... ok
test_salmonella (test.test_species.TestKpComplex) ... ok
test_citrobacter (test.test_species.TestSpecies) ... FAIL
test_klebsiella_aerogenes (test.test_species.TestSpecies) ... FAIL
test_klebsiella_africanensis (test.test_species.TestSpecies) ... FAIL
test_klebsiella_grimontii (test.test_species.TestSpecies) ... FAIL
test_klebsiella_indica (test.test_species.TestSpecies) ... FAIL
test_klebsiella_michiganensis (test.test_species.TestSpecies) ... FAIL
test_klebsiella_oxytoca (test.test_species.TestSpecies) ... FAIL
test_klebsiella_pasteurii (test.test_species.TestSpecies) ... FAIL
test_klebsiella_pneumoniae (test.test_species.TestSpecies) ... FAIL
test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies) ... FAIL
test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies) ... FAIL
test_klebsiella_quasivariicola (test.test_species.TestSpecies) ... FAIL
test_klebsiella_spallanzanii (test.test_species.TestSpecies) ... FAIL
test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies) ... FAIL
test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies) ... FAIL
test_raoultella_ornithinolytica (test.test_species.TestSpecies) ... FAIL
test_raoultella_planticola (test.test_species.TestSpecies) ... FAIL
test_raoultella_terrigena (test.test_species.TestSpecies) ... FAIL
test_salmonella (test.test_species.TestSpecies) ... FAIL
test_nothing (test.test_summary.TestResScore) ... ok
test_res_counts_1 (test.test_summary.TestResScore) ... ok
test_res_counts_2 (test.test_summary.TestResScore) ... ok
test_res_counts_3 (test.test_summary.TestResScore)
Intrinsic Bla genes should not add to the counts. ... ok
test_res_counts_4 (test.test_summary.TestResScore)
Omp genes should not add to the counts. ... ok
test_res_counts_5 (test.test_summary.TestResScore)
Mutations should add to the class count but not to the gene count (because that is for ... ok
test_res_counts_6 (test.test_summary.TestResScore)
Mutations should add to the class count but not to the gene count (because that is for ... ok
test_res_counts_7 (test.test_summary.TestResScore)
Truncations should add to the class count but not to the gene count (because that is for ... ok
test_res_counts_8 (test.test_summary.TestResScore)
Truncations should add to the class count but not to the gene count (because that is for ... ok
test_res_score_1 (test.test_summary.TestResScore) ... ok
test_res_score_2 (test.test_summary.TestResScore) ... ok
test_res_score_3 (test.test_summary.TestResScore) ... ok
test_res_score_4 (test.test_summary.TestResScore) ... ok
test_res_score_5 (test.test_summary.TestResScore) ... ok
test_res_score_6 (test.test_summary.TestResScore) ... ok
test_res_score_7 (test.test_summary.TestResScore) ... ok
test_vir_score_1 (test.test_summary.TestResScore) ... ok
test_vir_score_2 (test.test_summary.TestResScore) ... ok
test_vir_score_3 (test.test_summary.TestResScore) ... ok
test_vir_score_4 (test.test_summary.TestResScore) ... ok
test_vir_score_5 (test.test_summary.TestResScore) ... ok
test_vir_score_6 (test.test_summary.TestResScore) ... ok
test_vir_score_7 (test.test_summary.TestResScore) ... ok

======================================================================
ERROR: test_AS7 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 341, in test_AS7
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_000009885 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 169, in test_GCF_000009885
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_000968155 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 205, in test_GCF_000968155
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_001068035 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 107, in test_GCF_001068035
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_002108345 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 232, in test_GCF_002108345
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_002247645 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 259, in test_GCF_002247645
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_002248955 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 287, in test_GCF_002248955
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_003095495 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 138, in test_GCF_003095495
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_003345475 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 314, in test_GCF_003345475
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_003400925 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 80, in test_GCF_003400925
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_004010735 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 198, in test_GCF_004010735
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_GCF_900501255 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 53, in test_GCF_900501255
    results = self.get_all_results(contigs)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_genomes.py", line 39, in get_all_results
    results.update(get_ybt_mlst_results(self.data_dir, contigs))
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 445, in get_ybt_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'ybt_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ybt_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_iro_exact (test.test_iro.TestIro)
This test is an exact match for SmST33.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_iro.py", line 44, in test_iro_exact
    results = get_iro_mlst_results(self.data_dir, 'test/sequences/test_iro_1.fasta')
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 463, in get_iro_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'iro_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/iro_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_iro_incomplete (test.test_iro.TestIro)
This test is an exact match for only one allele.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_iro.py", line 81, in test_iro_incomplete
    results = get_iro_mlst_results(self.data_dir, 'test/sequences/test_iro_4.fasta')
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 463, in get_iro_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'iro_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/iro_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_iro_inexact (test.test_iro.TestIro)
This test is an inexact match for SmST33. There are single base changes in iroC and in
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_iro.py", line 57, in test_iro_inexact
    results = get_iro_mlst_results(self.data_dir, 'test/sequences/test_iro_2.fasta')
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 463, in get_iro_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'iro_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/iro_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_iro_novel (test.test_iro.TestIro)
This test is an exact match for alleles, but an unknown combination.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_iro.py", line 69, in test_iro_novel
    results = get_iro_mlst_results(self.data_dir, 'test/sequences/test_iro_3.fasta')
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 463, in get_iro_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'iro_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/iro_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_iro_random (test.test_iro.TestIro)
This test has just random sequence and should give no iro call.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_iro.py", line 32, in test_iro_random
    results = get_iro_mlst_results(self.data_dir, 'test/sequences/test_random.fasta')
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 463, in get_iro_mlst_results
    return get_virulence_cluster_results(data_folder, contigs, 'iro_alleles.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 425, in get_virulence_cluster_results
    results = mlst_blast(seqs, database, 'yes', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/iro_alleles.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_134 (test.test_mlst.TestMlst)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 109, in test_134
    results = get_chromosome_mlst_results(self.data_dir, contigs, True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_83 (test.test_mlst.TestMlst)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 94, in test_83
    results = get_chromosome_mlst_results(self.data_dir, contigs, True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ba779 (test.test_mlst.TestMlst)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 124, in test_ba779
    results = get_chromosome_mlst_results(self.data_dir, contigs, True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_chromosome_exact (test.test_mlst.TestMlst)
This test is an exact match for ST23.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 49, in test_chromosome_exact
    results = get_chromosome_mlst_results(self.data_dir, 'test/sequences/test_mlst_1.fasta', True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_chromosome_inexact (test.test_mlst.TestMlst)
This test is is one base off from ST23 (single substitution in mdh_1 of G to A).
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 64, in test_chromosome_inexact
    results = get_chromosome_mlst_results(self.data_dir, 'test/sequences/test_mlst_2.fasta', True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_chromosome_random (test.test_mlst.TestMlst)
This test has just random sequence and should give no MLST call.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 34, in test_chromosome_random
    results = get_chromosome_mlst_results(self.data_dir, 'test/sequences/test_random.fasta', True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ozanae (test.test_mlst.TestMlst)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 139, in test_ozanae
    results = get_chromosome_mlst_results(self.data_dir, contigs, True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_rhinoscleromatis (test.test_mlst.TestMlst)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 147, in test_rhinoscleromatis
    results = get_chromosome_mlst_results(self.data_dir, contigs, True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_unknown_ST (test.test_mlst.TestMlst)
This test has exact matches for alleles but in an unknown ST combination
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_mlst.py", line 79, in test_unknown_ST
    results = get_chromosome_mlst_results(self.data_dir, 'test/sequences/test_mlst_3.fasta', True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 393, in get_chromosome_mlst_results
    results = mlst_blast(seqs, database, 'no', [contigs], minident=95, maxmissing=3,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/mlstBLAST.py", line 74, in mlst_blast
    hits = run_blastn(seqs, contigs, minident, ungapped=True, culling_limit=2)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/Klebsiella_pneumoniae.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_01 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 33, in test_res_01
    results = get_resistance_results(self.data_dir, 'test/res_test/01.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_02 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 40, in test_res_02
    results = get_resistance_results(self.data_dir, 'test/res_test/02.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_03 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 47, in test_res_03
    results = get_resistance_results(self.data_dir, 'test/res_test/03.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_04 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 54, in test_res_04
    results = get_resistance_results(self.data_dir, 'test/res_test/04.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_05 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 61, in test_res_05
    results = get_resistance_results(self.data_dir, 'test/res_test/05.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_06 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 68, in test_res_06
    results = get_resistance_results(self.data_dir, 'test/res_test/06.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_07 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 75, in test_res_07
    results = get_resistance_results(self.data_dir, 'test/res_test/07.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_08 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 82, in test_res_08
    results = get_resistance_results(self.data_dir, 'test/res_test/08.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_09 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 89, in test_res_09
    results = get_resistance_results(self.data_dir, 'test/res_test/09.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_res_10 (test.test_res_alleles.TestResAlleles)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_alleles.py", line 96, in test_res_10
    results = get_resistance_results(self.data_dir, 'test/res_test/10.fasta', self.args,
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in test/res_test/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_mgrb_pmrb.py", line 37, in test_both_genes_intact
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_mgrb_pmrb_1.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_mgrb_pmrb.py", line 58, in test_mgrb_missing
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_mgrb_pmrb_4.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
Setting the Kp complex variable to False should turn off the MgrB/PmrB tests.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_mgrb_pmrb.py", line 66, in test_mgrb_missing_non_kp_complex
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_mgrb_pmrb_4.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
This tests an early stop mutation (without a frameshift) in pmrB.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_mgrb_pmrb.py", line 53, in test_pmrb_early_stop
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_mgrb_pmrb_3.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_mgrb_pmrb.py", line 71, in test_pmrb_early_stop_SRR2098701
    results = get_resistance_results(self.data_dir, 'test/sequences/SRR2098701.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB)
A frameshift in pmrB should cause an early stop and lead to a colisitin resistance call.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_mgrb_pmrb.py", line 45, in test_pmrb_frameshift
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_mgrb_pmrb_2.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_both_genes_intact (test.test_res_omp.TestResOmp)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_omp.py", line 37, in test_both_genes_intact
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_omp_1.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ompk35_early_stop (test.test_res_omp.TestResOmp)
This tests an early stop mutation (without a frameshift) in OmpK35.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_omp.py", line 53, in test_ompk35_early_stop
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_omp_3.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ompk35_frameshift (test.test_res_omp.TestResOmp)
A frameshift in OmpK35 should cause an early stop and lead to a carbapenem resistance call.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_omp.py", line 45, in test_ompk35_frameshift
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_omp_2.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ompk36_missing (test.test_res_omp.TestResOmp)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_omp.py", line 58, in test_ompk36_missing
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_omp_4.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ompk36gd (test.test_res_omp.TestResOmp)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_omp.py", line 63, in test_ompk36gd
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_omp_5.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ompk36td (test.test_res_omp.TestResOmp)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_omp.py", line 68, in test_ompk36td
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_omp_6.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp)
Setting the Kp complex variable to False should turn off the OmpK tests.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_omp.py", line 76, in test_ompk36td_non_kp_complex
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_omp_6.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_gyra (test.test_res_qrdr.TestResGyrAParC)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_qrdr.py", line 42, in test_gyra
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_qrdr_2.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_qrdr.py", line 52, in test_gyra_and_parc
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_qrdr_4.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC)
Setting the Kp complex variable to False should turn off the QRDR tests.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_qrdr.py", line 61, in test_gyra_and_parc_non_kp_complex
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_qrdr_4.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_no_mutations (test.test_res_qrdr.TestResGyrAParC)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_qrdr.py", line 37, in test_no_mutations
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_qrdr_1.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_parc (test.test_res_qrdr.TestResGyrAParC)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_qrdr.py", line 47, in test_parc
    results = get_resistance_results(self.data_dir, 'test/sequences/test_res_qrdr_3.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
ERROR: test_tem (test.test_res_tem.TestResTem)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_res_tem.py", line 38, in test_tem
    results = get_resistance_results(self.data_dir, 'test/sequences/tem.fasta',
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/kleborate.py", line 508, in get_resistance_results
    res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, 80.0, 90.0)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 29, in resblast_one_assembly
    hits_dict = blast_against_all(seqs, mincov, minident, contigs, gene_info)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/resBLAST.py", line 90, in blast_against_all
    hits = run_blastn(seqs, contigs, minident, ungapped=True)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 20, in run_blastn
    build_blast_database_if_needed(db)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/blastn.py", line 56, in build_blast_database_if_needed
    subprocess.check_call('makeblastdb -dbtype nucl -in ' + seqs, stdout=devnull,
  File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'makeblastdb -dbtype nucl -in /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/kleborate/data/ARGannot_r3.fasta' returned non-zero exit status 255.

======================================================================
FAIL: test_citrobacter (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 99, in test_citrobacter
    self.assertTrue('Citrobacter' in species)
AssertionError: False is not true

======================================================================
FAIL: test_klebsiella_aerogenes (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 27, in test_klebsiella_aerogenes
    self.assertEqual(species, 'Klebsiella aerogenes')
AssertionError: 'unknown' != 'Klebsiella aerogenes'
- unknown
+ Klebsiella aerogenes


======================================================================
FAIL: test_klebsiella_africanensis (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 79, in test_klebsiella_africanensis
    self.assertEqual(species, 'Klebsiella africana')
AssertionError: 'unknown' != 'Klebsiella africana'
- unknown
+ Klebsiella africana


======================================================================
FAIL: test_klebsiella_grimontii (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 31, in test_klebsiella_grimontii
    self.assertEqual(species, 'Klebsiella grimontii')
AssertionError: 'unknown' != 'Klebsiella grimontii'
- unknown
+ Klebsiella grimontii


======================================================================
FAIL: test_klebsiella_indica (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 35, in test_klebsiella_indica
    self.assertEqual(species, 'Klebsiella indica')
AssertionError: 'unknown' != 'Klebsiella indica'
- unknown
+ Klebsiella indica


======================================================================
FAIL: test_klebsiella_michiganensis (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 39, in test_klebsiella_michiganensis
    self.assertEqual(species, 'Klebsiella michiganensis')
AssertionError: 'unknown' != 'Klebsiella michiganensis'
- unknown
+ Klebsiella michiganensis


======================================================================
FAIL: test_klebsiella_oxytoca (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 43, in test_klebsiella_oxytoca
    self.assertEqual(species, 'Klebsiella oxytoca')
AssertionError: 'unknown' != 'Klebsiella oxytoca'
- unknown
+ Klebsiella oxytoca


======================================================================
FAIL: test_klebsiella_pasteurii (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 47, in test_klebsiella_pasteurii
    self.assertEqual(species, 'Klebsiella pasteurii')
AssertionError: 'unknown' != 'Klebsiella pasteurii'
- unknown
+ Klebsiella pasteurii


======================================================================
FAIL: test_klebsiella_pneumoniae (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 51, in test_klebsiella_pneumoniae
    self.assertEqual(species, 'Klebsiella pneumoniae')
AssertionError: 'unknown' != 'Klebsiella pneumoniae'
- unknown
+ Klebsiella pneumoniae


======================================================================
FAIL: test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 55, in test_klebsiella_quasipneumoniae_subsp_quasipneumoniae
    self.assertEqual(species, 'Klebsiella quasipneumoniae subsp. quasipneumoniae')
AssertionError: 'unknown' != 'Klebsiella quasipneumoniae subsp. quasipneumoniae'
- unknown
+ Klebsiella quasipneumoniae subsp. quasipneumoniae


======================================================================
FAIL: test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 59, in test_klebsiella_quasipneumoniae_subsp_similipneumoniae
    self.assertEqual(species, 'Klebsiella quasipneumoniae subsp. similipneumoniae')
AssertionError: 'unknown' != 'Klebsiella quasipneumoniae subsp. similipneumoniae'
- unknown
+ Klebsiella quasipneumoniae subsp. similipneumoniae


======================================================================
FAIL: test_klebsiella_quasivariicola (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 63, in test_klebsiella_quasivariicola
    self.assertEqual(species, 'Klebsiella quasivariicola')
AssertionError: 'unknown' != 'Klebsiella quasivariicola'
- unknown
+ Klebsiella quasivariicola


======================================================================
FAIL: test_klebsiella_spallanzanii (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 67, in test_klebsiella_spallanzanii
    self.assertEqual(species, 'Klebsiella spallanzanii')
AssertionError: 'unknown' != 'Klebsiella spallanzanii'
- unknown
+ Klebsiella spallanzanii


======================================================================
FAIL: test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 75, in test_klebsiella_variicola_subsp_tropicalensis
    self.assertEqual(species, 'Klebsiella variicola subsp. tropica')
AssertionError: 'unknown' != 'Klebsiella variicola subsp. tropica'
- unknown
+ Klebsiella variicola subsp. tropica


======================================================================
FAIL: test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 71, in test_klebsiella_variicola_subsp_variicola
    self.assertEqual(species, 'Klebsiella variicola subsp. variicola')
AssertionError: 'unknown' != 'Klebsiella variicola subsp. variicola'
- unknown
+ Klebsiella variicola subsp. variicola


======================================================================
FAIL: test_raoultella_ornithinolytica (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 87, in test_raoultella_ornithinolytica
    self.assertEqual(species, 'Klebsiella (Raoultella) ornithinolytica')
AssertionError: 'unknown' != 'Klebsiella (Raoultella) ornithinolytica'
- unknown
+ Klebsiella (Raoultella) ornithinolytica


======================================================================
FAIL: test_raoultella_planticola (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 83, in test_raoultella_planticola
    self.assertEqual(species, 'Klebsiella (Raoultella) planticola')
AssertionError: 'unknown' != 'Klebsiella (Raoultella) planticola'
- unknown
+ Klebsiella (Raoultella) planticola


======================================================================
FAIL: test_raoultella_terrigena (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 91, in test_raoultella_terrigena
    self.assertEqual(species, 'Klebsiella (Raoultella) terrigena')
AssertionError: 'unknown' != 'Klebsiella (Raoultella) terrigena'
- unknown
+ Klebsiella (Raoultella) terrigena


======================================================================
FAIL: test_salmonella (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/test/test_species.py", line 95, in test_salmonella
    self.assertTrue('Salmonella' in species)
AssertionError: False is not true

----------------------------------------------------------------------
Ran 123 tests in 248.660s

FAILED (failures=19, errors=55)
E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; python3.8 -m unittest discover -v 
dh_auto_test: error: pybuild --test -i python{version} -p 3.8 returned exit code 13
make: *** [debian/rules:4: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-08-15T04:50:03Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 275
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 637
Job: kleborate_1.0.0-3
Machine Architecture: armhf
Package: kleborate
Package-Time: 980
Source-Version: 1.0.0-3
Space: 0
Status: failed
Version: 1.0.0-3
--------------------------------------------------------------------------------
Finished at 2020-08-15T04:50:03Z
Build needed 00:00:00, 0k disc space