Raspbian Package Auto-Building

Build log for kleborate (1.0.0-3) on armhf

kleborate1.0.0-3armhf → 2020-01-29 08:29:12

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| kleborate 1.0.0-3 (armhf)                    Wed, 29 Jan 2020 08:10:53 +0000 |
+==============================================================================+

Package: kleborate
Version: 1.0.0-3
Source Version: 1.0.0-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-6b8e0100-6275-4eaa-b818-719115e80798' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.3 MB in 10s (2338 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'kleborate' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kleborate.git
Please use:
git clone https://salsa.debian.org/med-team/kleborate.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 88.6 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main kleborate 1.0.0-3 (dsc) [2162 B]
Get:2 http://172.17.0.1/private bullseye-staging/main kleborate 1.0.0-3 (tar) [82.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main kleborate 1.0.0-3 (diff) [5995 kB]
Fetched 88.6 MB in 21s (4211 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kleborate-QOg035/kleborate-1.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kleborate-QOg035' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-BQ1YV1/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-BQ1YV1/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9926 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12207 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive
dpkg-deb: building package 'sbuild-build-depends-kleborate-dummy' in '/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive/sbuild-build-depends-kleborate-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-kleborate-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Sources [543 B]
Get:5 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ Packages [617 B]
Fetched 2493 B in 0s (11.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install kleborate build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3
  libbsd0 libcapnp-0.7.0 libcroco3 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libgsl23 libgslcblas0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
  liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3
  libmbedtls12 libmbedx509-0 libmpdec2 libmurmurhash2 libpipeline1 libpng16-16
  libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib
  libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
  libsub-override-perl libtiff5 libtinfo5 libtool libuchardet0 libwebp6
  libwebpdemux2 libwebpmux3 libxml2 m4 man-db mash mime-support ncbi-blast+
  ncbi-data po-debconf python3 python3-biopython python3-distutils
  python3-lib2to3 python3-minimal python3-numpy python3-pil
  python3-pkg-resources python3-reportlab python3-reportlab-accel
  python3-setuptools python3.7 python3.7-minimal python3.8 python3.8-minimal
  sensible-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  kaptive-data kaptive-example gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
  | gsl-ref-html liblcms2-utils libtool-doc gfortran | fortran95-compiler
  gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
  python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree
  mafft muscle phylip phyml prank probcons python3-mysqldb python3-matplotlib
  python3-rdflib python3-renderpm python3-psycopg2 python3-scipy raxml
  samtools t-coffee wise w3-dtd-mathml gfortran python-numpy-doc python3-dev
  python3-pytest python3-numpy-dbg python-pil-doc python3-pil-dbg pdf-viewer
  python3-egenix-mxtexttools python-reportlab-doc python-setuptools-doc
  python3.7-venv python3.7-doc binfmt-support python3.8-venv python3.8-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc
  python3-olefile python3-renderpm
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3
  libbsd0 libcapnp-0.7.0 libcroco3 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libgsl23 libgslcblas0 libicu63 libimagequant0 libjbig0 libjpeg62-turbo
  liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3
  libmbedtls12 libmbedx509-0 libmpdec2 libmurmurhash2 libpipeline1 libpng16-16
  libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib
  libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libssl1.1
  libsub-override-perl libtiff5 libtinfo5 libtool libuchardet0 libwebp6
  libwebpdemux2 libwebpmux3 libxml2 m4 man-db mash mime-support ncbi-blast+
  ncbi-data po-debconf python3 python3-biopython python3-distutils
  python3-lib2to3 python3-minimal python3-numpy python3-pil
  python3-pkg-resources python3-reportlab python3-reportlab-accel
  python3-setuptools python3.7 python3.7-minimal python3.8 python3.8-minimal
  sbuild-build-depends-kleborate-dummy sensible-utils
0 upgraded, 86 newly installed, 0 to remove and 2 not upgraded.
Need to get 54.7 MB of archives.
After this operation, 240 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-BQ1YV1/apt_archive ./ sbuild-build-depends-kleborate-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1 [585 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1 [1527 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1 [1669 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1 [350 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.1-2 [742 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.1-2 [1620 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.8 [176 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.8 [1019 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.1-2 [1597 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.1-2 [406 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-22+rpi1 [230 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5+b1 [4484 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab-accel armhf 3.5.31-1 [34.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 6.2.1-2+b1 [396 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf python3-reportlab all 3.5.31-1 [548 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf python3-biopython armhf 1.76+dfsg-1 [1378 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf ncbi-data all 6.1.20170106+dfsg1-7 [3555 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf liblmdb0 armhf 0.9.22-1 [38.2 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libmbedcrypto3 armhf 2.16.3-1 [192 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libmbedx509-0 armhf 2.16.3-1 [99.2 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libmbedtls12 armhf 2.16.3-1 [125 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf ncbi-blast+ armhf 2.8.1-2+b1 [9008 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf kaptive all 0.7.0-2 [30.6 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libcapnp-0.7.0 armhf 0.7.0-5 [865 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libgslcblas0 armhf 2.5+dfsg-6 [79.0 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libgsl23 armhf 2.5+dfsg-6 [704 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libmurmurhash2 armhf 1.5-2 [5892 B]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf mash armhf 2.2.2+dfsg-1 [123 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12207 files and directories currently installed.)
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Not building database; man-db/auto-update is not 'true'.
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Setting up dh-autoreconf (19) ...
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Processing triggers for libc-bin (2.29-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-6+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-22+rpi1 gcc-9_9.2.1-22+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6+rpi1 binutils-arm-linux-gnueabihf_2.33.1-6+rpi1 binutils-common_2.33.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-22+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.8 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-22+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-22+rpi1 gcc-9-base_9.2.1-22+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 kaptive_0.7.0-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-22+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-22+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-6+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcapnp-0.7.0_0.7.0-5 libcc1-0_9.2.1-22+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.8 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-22+rpi1 libgcc1_1:9.2.1-22+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-22+rpi1 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-22+rpi1 libgpg-error0_1.36-7 libgsl23_2.5+dfsg-6 libgslcblas0_2.5+dfsg-6 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libimagequant0_2.12.2-1.1 libisl22_0.22-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libksba8_1.3.5-2 liblapack3_3.9.0-1 liblcms2-2_2.9-3 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblmdb0_0.9.22-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmbedcrypto3_2.16.3-1 libmbedtls12_2.16.3-1 libmbedx509-0_2.16.3-1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libmurmurhash2_1.5-2 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libpython3-stdlib_3.7.5-3 libpython3.7-minimal_3.7.6-1 libpython3.7-stdlib_3.7.6-1 libpython3.8-minimal_3.8.1-2 libpython3.8-stdlib_3.8.1-2 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1+fossil191229-1 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-22+rpi1 libstdc++6_9.2.1-22+rpi1 libsub-override-perl_0.09-2 libsystemd0_244-3+rpi1+b1 libtasn1-6_4.15.0-2 libtiff5_4.1.0+git191117-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-22+rpi1 libuchardet0_0.0.6-3 libudev1_244-3+rpi1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mash_2.2.2+dfsg-1 mawk_1.3.3-17 mime-support_3.64 mount_2.34-0.1 ncbi-blast+_2.8.1-2+b1 ncbi-data_6.1.20170106+dfsg1-7 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.7.5-3 python3-biopython_1.76+dfsg-1 python3-distutils_3.8.0-1 python3-lib2to3_3.8.0-1 python3-minimal_3.7.5-3 python3-numpy_1:1.17.4-5+b1 python3-pil_6.2.1-2+b1 python3-pkg-resources_44.0.0-1 python3-reportlab_3.5.31-1 python3-reportlab-accel_3.5.31-1 python3-setuptools_44.0.0-1 python3.7_3.7.6-1 python3.7-minimal_3.7.6-1 python3.8_3.8.1-2 python3.8-minimal_3.8.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kleborate-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 27 12:17:16 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./kleborate_1.0.0-3.dsc
dpkg-source: info: extracting kleborate in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking kleborate_1.0.0.orig.tar.gz
dpkg-source: info: unpacking kleborate_1.0.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python3.patch
dpkg-source: info: applying use_debian_installed_kaptive.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-6b8e0100-6275-4eaa-b818-719115e80798
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package kleborate
dpkg-buildpackage: info: source version 1.0.0-3
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build' (and everything under it)
/usr/lib/python3/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing '0.4.0-beta' to '0.4.0b0'
  normalized_version,
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config 
running config
/usr/lib/python3/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing '0.4.0-beta' to '0.4.0b0'
  normalized_version,
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/blastn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/contig_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/kleborate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/mlstBLAST.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/resBLAST.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/rmpA.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/species.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/truncation.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
copying kleborate/kaptive.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate
/usr/lib/python3/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing '0.4.0-beta' to '0.4.0b0'
  normalized_version,
package init file 'kaptive/__init__.py' not found (or not a regular file)
running egg_info
creating Kleborate.egg-info
writing Kleborate.egg-info/PKG-INFO
writing dependency_links to Kleborate.egg-info/dependency_links.txt
writing entry points to Kleborate.egg-info/entry_points.txt
writing top-level names to Kleborate.egg-info/top_level.txt
writing manifest file 'Kleborate.egg-info/SOURCES.txt'
reading manifest file 'Kleborate.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'kaptive/reference_database'
warning: no directories found matching 'kaptive/sample_data'
writing manifest file 'Kleborate.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp1.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp10.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp11.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp12.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp13.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp14.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp2.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp3.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp4.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp5.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp6.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp7.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp8.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
copying kleborate/ICEKp_references/ICEKp9.embl -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/ICEKp_references
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/ARGannot_clustered80_r3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/ARGannot_r3.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/AbST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/CbST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/Klebsiella_pneumoniae.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/MgrB_and_PmrB.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/OmpK.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/QRDR_120.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/SmST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/YbST_profiles.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/clb_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/hypermucoidy.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/hypermucoidy_rmpA.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/iro_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/iuc_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/kpneumoniae.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/species_mash_sketches.msh -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/wzi.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/wzi.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
copying kleborate/data/ybt_alleles.fasta -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/kleborate/data
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build; python3.7 -m unittest discover -v 
test_ambiguous_bases_1 (test.test_contig_stats.TestContigStats) ... ok
test_ambiguous_bases_2 (test.test_contig_stats.TestContigStats) ... ok
test_ambiguous_bases_3 (test.test_contig_stats.TestContigStats) ... ok
test_ambiguous_bases_4 (test.test_contig_stats.TestContigStats) ... ok
test_count_1 (test.test_contig_stats.TestContigStats) ... ok
test_count_2 (test.test_contig_stats.TestContigStats) ... ok
test_longest_1 (test.test_contig_stats.TestContigStats) ... ok
test_longest_2 (test.test_contig_stats.TestContigStats) ... ok
test_n50_1 (test.test_contig_stats.TestContigStats) ... ok
test_n50_2 (test.test_contig_stats.TestContigStats) ... ok
test_AS7 (test.test_genomes.TestGenomes) ... ok
test_GCF_000009885 (test.test_genomes.TestGenomes) ... ok
test_GCF_000968155 (test.test_genomes.TestGenomes) ... ok
test_GCF_001068035 (test.test_genomes.TestGenomes) ... FAIL
test_GCF_002108345 (test.test_genomes.TestGenomes) ... FAIL
test_GCF_002247645 (test.test_genomes.TestGenomes) ... ok
test_GCF_002248955 (test.test_genomes.TestGenomes) ... FAIL
test_GCF_003095495 (test.test_genomes.TestGenomes) ... FAIL
test_GCF_003345475 (test.test_genomes.TestGenomes) ... FAIL
test_GCF_003400925 (test.test_genomes.TestGenomes) ... FAIL
test_GCF_004010735 (test.test_genomes.TestGenomes) ... ok
test_GCF_900501255 (test.test_genomes.TestGenomes) ... ok
test_iro_exact (test.test_iro.TestIro) ... ok
test_iro_incomplete (test.test_iro.TestIro) ... ok
test_iro_inexact (test.test_iro.TestIro) ... ok
test_iro_novel (test.test_iro.TestIro) ... ok
test_iro_random (test.test_iro.TestIro) ... ok
test_134 (test.test_mlst.TestMlst) ... ok
test_83 (test.test_mlst.TestMlst) ... ok
test_ba779 (test.test_mlst.TestMlst) ... ok
test_chromosome_exact (test.test_mlst.TestMlst) ... ok
test_chromosome_inexact (test.test_mlst.TestMlst) ... ok
test_chromosome_random (test.test_mlst.TestMlst) ... ok
test_ozanae (test.test_mlst.TestMlst) ... ok
test_rhinoscleromatis (test.test_mlst.TestMlst) ... ok
test_unknown_ST (test.test_mlst.TestMlst) ... ok
test_res_01 (test.test_res_alleles.TestResAlleles) ... ok
test_res_02 (test.test_res_alleles.TestResAlleles) ... ok
test_res_03 (test.test_res_alleles.TestResAlleles) ... ok
test_res_04 (test.test_res_alleles.TestResAlleles) ... ok
test_res_05 (test.test_res_alleles.TestResAlleles) ... ok
test_res_06 (test.test_res_alleles.TestResAlleles) ... ok
test_res_07 (test.test_res_alleles.TestResAlleles) ... ok
test_res_08 (test.test_res_alleles.TestResAlleles) ... ok
test_res_09 (test.test_res_alleles.TestResAlleles) ... ok
test_res_10 (test.test_res_alleles.TestResAlleles) ... ok
test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok
test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok
test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok
test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok
test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok
test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok
test_both_genes_intact (test.test_res_omp.TestResOmp) ... ok
test_ompk35_early_stop (test.test_res_omp.TestResOmp) ... ok
test_ompk35_frameshift (test.test_res_omp.TestResOmp) ... ok
test_ompk36_missing (test.test_res_omp.TestResOmp) ... ok
test_ompk36gd (test.test_res_omp.TestResOmp) ... ok
test_ompk36td (test.test_res_omp.TestResOmp) ... ok
test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp) ... ok
test_gyra (test.test_res_qrdr.TestResGyrAParC) ... ok
test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC) ... ok
test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC) ... ok
test_no_mutations (test.test_res_qrdr.TestResGyrAParC) ... ok
test_parc (test.test_res_qrdr.TestResGyrAParC) ... ok
test_tem (test.test_res_tem.TestResTem) ... ok
test_citrobacter (test.test_species.TestKpComplex) ... ok
test_klebsiella_aerogenes (test.test_species.TestKpComplex) ... ok
test_klebsiella_africanensis (test.test_species.TestKpComplex) ... ok
test_klebsiella_grimontii (test.test_species.TestKpComplex) ... ok
test_klebsiella_michiganensis (test.test_species.TestKpComplex) ... ok
test_klebsiella_oxytoca (test.test_species.TestKpComplex) ... ok
test_klebsiella_pneumoniae (test.test_species.TestKpComplex) ... ok
test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestKpComplex) ... ok
test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestKpComplex) ... ok
test_klebsiella_quasivariicola (test.test_species.TestKpComplex) ... ok
test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestKpComplex) ... ok
test_klebsiella_variicola_subsp_variicola (test.test_species.TestKpComplex) ... ok
test_raoultella_ornithinolytica (test.test_species.TestKpComplex) ... ok
test_raoultella_planticola (test.test_species.TestKpComplex) ... ok
test_raoultella_terrigena (test.test_species.TestKpComplex) ... ok
test_salmonella (test.test_species.TestKpComplex) ... ok
test_citrobacter (test.test_species.TestSpecies) ... FAIL
test_klebsiella_aerogenes (test.test_species.TestSpecies) ... FAIL
test_klebsiella_africanensis (test.test_species.TestSpecies) ... FAIL
test_klebsiella_grimontii (test.test_species.TestSpecies) ... FAIL
test_klebsiella_indica (test.test_species.TestSpecies) ... FAIL
test_klebsiella_michiganensis (test.test_species.TestSpecies) ... FAIL
test_klebsiella_oxytoca (test.test_species.TestSpecies) ... FAIL
test_klebsiella_pasteurii (test.test_species.TestSpecies) ... FAIL
test_klebsiella_pneumoniae (test.test_species.TestSpecies) ... FAIL
test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies) ... FAIL
test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies) ... FAIL
test_klebsiella_quasivariicola (test.test_species.TestSpecies) ... FAIL
test_klebsiella_spallanzanii (test.test_species.TestSpecies) ... FAIL
test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies) ... FAIL
test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies) ... FAIL
test_raoultella_ornithinolytica (test.test_species.TestSpecies) ... FAIL
test_raoultella_planticola (test.test_species.TestSpecies) ... FAIL
test_raoultella_terrigena (test.test_species.TestSpecies) ... FAIL
test_salmonella (test.test_species.TestSpecies) ... FAIL
test_nothing (test.test_summary.TestResScore) ... ok
test_res_counts_1 (test.test_summary.TestResScore) ... ok
test_res_counts_2 (test.test_summary.TestResScore) ... ok
test_res_counts_3 (test.test_summary.TestResScore) ... ok
test_res_counts_4 (test.test_summary.TestResScore) ... ok
test_res_counts_5 (test.test_summary.TestResScore) ... ok
test_res_counts_6 (test.test_summary.TestResScore) ... ok
test_res_counts_7 (test.test_summary.TestResScore) ... ok
test_res_counts_8 (test.test_summary.TestResScore) ... ok
test_res_score_1 (test.test_summary.TestResScore) ... ok
test_res_score_2 (test.test_summary.TestResScore) ... ok
test_res_score_3 (test.test_summary.TestResScore) ... ok
test_res_score_4 (test.test_summary.TestResScore) ... ok
test_res_score_5 (test.test_summary.TestResScore) ... ok
test_res_score_6 (test.test_summary.TestResScore) ... ok
test_res_score_7 (test.test_summary.TestResScore) ... ok
test_vir_score_1 (test.test_summary.TestResScore) ... ok
test_vir_score_2 (test.test_summary.TestResScore) ... ok
test_vir_score_3 (test.test_summary.TestResScore) ... ok
test_vir_score_4 (test.test_summary.TestResScore) ... ok
test_vir_score_5 (test.test_summary.TestResScore) ... ok
test_vir_score_6 (test.test_summary.TestResScore) ... ok
test_vir_score_7 (test.test_summary.TestResScore) ... ok

======================================================================
FAIL: test_GCF_001068035 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_genomes.py", line 115, in test_GCF_001068035
    self.assertEqual(results['Col'], 'PmrB-40%')
AssertionError: '-' != 'PmrB-40%'
- -
+ PmrB-40%


======================================================================
FAIL: test_GCF_002108345 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_genomes.py", line 239, in test_GCF_002108345
    self.assertEqual(results['Flq'], 'GyrA-83I;ParC-80I;QnrB4;QnrB4')
AssertionError: 'QnrB4;QnrB4' != 'GyrA-83I;ParC-80I;QnrB4;QnrB4'
- QnrB4;QnrB4
+ GyrA-83I;ParC-80I;QnrB4;QnrB4


======================================================================
FAIL: test_GCF_002248955 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_genomes.py", line 294, in test_GCF_002248955
    self.assertEqual(results['Flq'], 'GyrA-83F;GyrA-87A;ParC-80I')
AssertionError: '-' != 'GyrA-83F;GyrA-87A;ParC-80I'
- -
+ GyrA-83F;GyrA-87A;ParC-80I


======================================================================
FAIL: test_GCF_003095495 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_genomes.py", line 146, in test_GCF_003095495
    self.assertEqual(results['Col'], 'MgrB-62%;PmrB-36%')
AssertionError: '-' != 'MgrB-62%;PmrB-36%'
- -
+ MgrB-62%;PmrB-36%


======================================================================
FAIL: test_GCF_003345475 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_genomes.py", line 319, in test_GCF_003345475
    self.assertEqual(results['Col'], 'Mcr1-1;MgrB-49%')
AssertionError: 'Mcr1-1' != 'Mcr1-1;MgrB-49%'
- Mcr1-1
+ Mcr1-1;MgrB-49%


======================================================================
FAIL: test_GCF_003400925 (test.test_genomes.TestGenomes)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_genomes.py", line 87, in test_GCF_003400925
    self.assertEqual(results['Flq'], 'GyrA-83I;ParC-80I')
AssertionError: '-' != 'GyrA-83I;ParC-80I'
- -
+ GyrA-83I;ParC-80I


======================================================================
FAIL: test_citrobacter (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 99, in test_citrobacter
    self.assertTrue('Citrobacter' in species)
AssertionError: False is not true

======================================================================
FAIL: test_klebsiella_aerogenes (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 27, in test_klebsiella_aerogenes
    self.assertEqual(species, 'Klebsiella aerogenes')
AssertionError: 'unknown' != 'Klebsiella aerogenes'
- unknown
+ Klebsiella aerogenes


======================================================================
FAIL: test_klebsiella_africanensis (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 79, in test_klebsiella_africanensis
    self.assertEqual(species, 'Klebsiella africana')
AssertionError: 'unknown' != 'Klebsiella africana'
- unknown
+ Klebsiella africana


======================================================================
FAIL: test_klebsiella_grimontii (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 31, in test_klebsiella_grimontii
    self.assertEqual(species, 'Klebsiella grimontii')
AssertionError: 'unknown' != 'Klebsiella grimontii'
- unknown
+ Klebsiella grimontii


======================================================================
FAIL: test_klebsiella_indica (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 35, in test_klebsiella_indica
    self.assertEqual(species, 'Klebsiella indica')
AssertionError: 'unknown' != 'Klebsiella indica'
- unknown
+ Klebsiella indica


======================================================================
FAIL: test_klebsiella_michiganensis (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 39, in test_klebsiella_michiganensis
    self.assertEqual(species, 'Klebsiella michiganensis')
AssertionError: 'unknown' != 'Klebsiella michiganensis'
- unknown
+ Klebsiella michiganensis


======================================================================
FAIL: test_klebsiella_oxytoca (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 43, in test_klebsiella_oxytoca
    self.assertEqual(species, 'Klebsiella oxytoca')
AssertionError: 'unknown' != 'Klebsiella oxytoca'
- unknown
+ Klebsiella oxytoca


======================================================================
FAIL: test_klebsiella_pasteurii (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 47, in test_klebsiella_pasteurii
    self.assertEqual(species, 'Klebsiella pasteurii')
AssertionError: 'unknown' != 'Klebsiella pasteurii'
- unknown
+ Klebsiella pasteurii


======================================================================
FAIL: test_klebsiella_pneumoniae (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 51, in test_klebsiella_pneumoniae
    self.assertEqual(species, 'Klebsiella pneumoniae')
AssertionError: 'unknown' != 'Klebsiella pneumoniae'
- unknown
+ Klebsiella pneumoniae


======================================================================
FAIL: test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 55, in test_klebsiella_quasipneumoniae_subsp_quasipneumoniae
    self.assertEqual(species, 'Klebsiella quasipneumoniae subsp. quasipneumoniae')
AssertionError: 'unknown' != 'Klebsiella quasipneumoniae subsp. quasipneumoniae'
- unknown
+ Klebsiella quasipneumoniae subsp. quasipneumoniae


======================================================================
FAIL: test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 59, in test_klebsiella_quasipneumoniae_subsp_similipneumoniae
    self.assertEqual(species, 'Klebsiella quasipneumoniae subsp. similipneumoniae')
AssertionError: 'unknown' != 'Klebsiella quasipneumoniae subsp. similipneumoniae'
- unknown
+ Klebsiella quasipneumoniae subsp. similipneumoniae


======================================================================
FAIL: test_klebsiella_quasivariicola (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 63, in test_klebsiella_quasivariicola
    self.assertEqual(species, 'Klebsiella quasivariicola')
AssertionError: 'unknown' != 'Klebsiella quasivariicola'
- unknown
+ Klebsiella quasivariicola


======================================================================
FAIL: test_klebsiella_spallanzanii (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 67, in test_klebsiella_spallanzanii
    self.assertEqual(species, 'Klebsiella spallanzanii')
AssertionError: 'unknown' != 'Klebsiella spallanzanii'
- unknown
+ Klebsiella spallanzanii


======================================================================
FAIL: test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 75, in test_klebsiella_variicola_subsp_tropicalensis
    self.assertEqual(species, 'Klebsiella variicola subsp. tropica')
AssertionError: 'unknown' != 'Klebsiella variicola subsp. tropica'
- unknown
+ Klebsiella variicola subsp. tropica


======================================================================
FAIL: test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 71, in test_klebsiella_variicola_subsp_variicola
    self.assertEqual(species, 'Klebsiella variicola subsp. variicola')
AssertionError: 'unknown' != 'Klebsiella variicola subsp. variicola'
- unknown
+ Klebsiella variicola subsp. variicola


======================================================================
FAIL: test_raoultella_ornithinolytica (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 87, in test_raoultella_ornithinolytica
    self.assertEqual(species, 'Klebsiella (Raoultella) ornithinolytica')
AssertionError: 'unknown' != 'Klebsiella (Raoultella) ornithinolytica'
- unknown
+ Klebsiella (Raoultella) ornithinolytica


======================================================================
FAIL: test_raoultella_planticola (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 83, in test_raoultella_planticola
    self.assertEqual(species, 'Klebsiella (Raoultella) planticola')
AssertionError: 'unknown' != 'Klebsiella (Raoultella) planticola'
- unknown
+ Klebsiella (Raoultella) planticola


======================================================================
FAIL: test_raoultella_terrigena (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 91, in test_raoultella_terrigena
    self.assertEqual(species, 'Klebsiella (Raoultella) terrigena')
AssertionError: 'unknown' != 'Klebsiella (Raoultella) terrigena'
- unknown
+ Klebsiella (Raoultella) terrigena


======================================================================
FAIL: test_salmonella (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/test/test_species.py", line 95, in test_salmonella
    self.assertTrue('Salmonella' in species)
AssertionError: False is not true

----------------------------------------------------------------------
Ran 123 tests in 542.071s

FAILED (failures=25)
E: pybuild pybuild:341: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build; python3.7 -m unittest discover -v 
dh_auto_test: error: pybuild --test -i python{version} -p 3.7 returned exit code 13
make: *** [debian/rules:4: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-01-29T08:29:10Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 228756
Build-Time: 550
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 504
Job: kleborate_1.0.0-3
Machine Architecture: armhf
Package: kleborate
Package-Time: 1097
Source-Version: 1.0.0-3
Space: 228756
Status: attempted
Version: 1.0.0-3
--------------------------------------------------------------------------------
Finished at 2020-01-29T08:29:10Z
Build needed 00:18:17, 228756k disk space