Raspbian Package Auto-Building

kineticstools → 0.6.1+git20220223.1326a4d+dfsg-2+b2 → armhf → 2023-02-26 15:44:56

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| kineticstools 0.6.1+git20220223.1326a4d+dfsg-2+b2 (armhf) Sun, 26 Feb 2023 15:16:28 +0000 |
+==============================================================================+

Package: kineticstools
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b2
Source Version: 0.6.1+git20220223.1326a4d+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-4064c765-7d6e-4cc0-a7a5-5d216fdba4ec' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.5 MB]
Fetched 28.3 MB in 30s (951 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'kineticstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kineticstools.git
Please use:
git clone https://salsa.debian.org/med-team/kineticstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 21.8 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-2 (dsc) [2101 B]
Get:2 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-2 (tar) [21.8 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-2 (diff) [10.4 kB]
Fetched 21.8 MB in 2s (12.5 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kineticstools-MWywhx/kineticstools-0.6.1+git20220223.1326a4d+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kineticstools-MWywhx' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-iXfXJJ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-iXfXJJ/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2908 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12765 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
dpkg-deb: building package 'sbuild-build-depends-kineticstools-dummy' in '/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive/sbuild-build-depends-kineticstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-kineticstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Sources [582 B]
Get:5 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ Packages [649 B]
Fetched 2564 B in 1s (3585 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install kineticstools build dependencies (apt-based resolver)
-------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates debhelper dh-autoreconf dh-python dh-strip-nondeterminism
  docutils-common dwz file fonts-urw-base35 gettext gettext-base groff-base
  intltool-debian libaec0 libarchive-zip-perl libblas3 libblkid1 libbrotli1
  libbsd0 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1
  libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6
  libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
  libhdf5-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 libicu72 libimagequant0
  libjbig0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore
  liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libmagic-mgc libmagic1
  libmount1 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16 libpsl5
  libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0
  librtmp1 libsmartcols1 libssh2-1 libsub-override-perl libsz2 libtiff6
  libtool libuchardet0 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libxau6
  libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support mount
  openssl po-debconf python3 python3-attr python3-avro python3-biopython
  python3-certifi python3-chardet python3-charset-normalizer python3-decorator
  python3-distutils python3-docutils python3-execnet python3-h5py
  python3-h5py-serial python3-idna python3-iniconfig python3-iso8601
  python3-lib2to3 python3-minimal python3-more-itertools python3-numpy
  python3-packaging python3-pbcommand python3-pbcore python3-pil
  python3-pkg-resources python3-pluggy python3-py python3-pysam python3-pytest
  python3-pytest-runner python3-pytest-xdist python3-renderpm
  python3-reportlab python3-reportlab-accel python3-requests python3-roman
  python3-scipy python3-setuptools python3-six python3-tz python3-uritools
  python3-urllib3 python3.11 python3.11-minimal util-linux util-linux-extra
  w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
  python3-tomli python3-installer fonts-freefont-otf | fonts-freefont-ttf
  fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff
  low-memory-monitor liblcms2-utils cryptsetup-bin libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser nfs-common
  libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc bwa
  clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml
  prank probcons python3-mysqldb python3-matplotlib python3-mmtf
  python3-rdflib python3-psycopg2 raxml samtools t-coffee wise docutils-doc
  fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
  texlive-latex-base texlive-latex-recommended execnet-doc python-h5py-doc
  gfortran python3-dev python-pbcore-doc python-pil-doc subversion pdf-viewer
  python3-egenix-mxtexttools python-reportlab-doc python3-cryptography
  python3-openssl python3-socks python-requests-doc python-scipy-doc
  python-setuptools-doc python3-brotli python3.11-venv python3.11-doc
  binfmt-support dosfstools kbd util-linux-locales
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common publicsuffix libltdl-dev uuid-runtime
  libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils
  python3-pygments python3-olefile
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
  dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian
  libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl3-gnutls
  libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
  libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0
  libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1
  libhdf5-hl-100 libhts3 libhtscodecs2 libicu72 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
  liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libmagic-mgc libmagic1 libnghttp2-14
  libopenjp2-7 libpipeline1 libpng16-16 libpsl5 libpython3-stdlib
  libpython3.11-minimal libpython3.11-stdlib libraqm0 librtmp1 libssh2-1
  libsub-override-perl libsz2 libtiff6 libtool libuchardet0 libwebp7
  libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap
  man-db media-types mime-support openssl po-debconf python3 python3-attr
  python3-avro python3-biopython python3-certifi python3-chardet
  python3-charset-normalizer python3-decorator python3-distutils
  python3-docutils python3-execnet python3-h5py python3-h5py-serial
  python3-idna python3-iniconfig python3-iso8601 python3-lib2to3
  python3-minimal python3-more-itertools python3-numpy python3-packaging
  python3-pbcommand python3-pbcore python3-pil python3-pkg-resources
  python3-pluggy python3-py python3-pysam python3-pytest python3-pytest-runner
  python3-pytest-xdist python3-renderpm python3-reportlab
  python3-reportlab-accel python3-requests python3-roman python3-scipy
  python3-setuptools python3-six python3-tz python3-uritools python3-urllib3
  python3.11 python3.11-minimal sbuild-build-depends-kineticstools-dummy
  w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
The following packages will be upgraded:
  bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux
  util-linux-extra
8 upgraded, 135 newly installed, 0 to remove and 8 not upgraded.
Need to get 77.9 MB of archives.
After this operation, 275 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-iXfXJJ/apt_archive ./ sbuild-build-depends-kineticstools-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-5 [84.2 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-5 [90.9 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-5 [97.5 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-5 [1063 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-5 [125 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.2-4 [797 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.2-4 [1681 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.2-1 [26.0 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf media-types all 10.0.0 [26.1 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-5 [27.1 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.2-4 [1668 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.2-4 [572 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.2-1 [9012 B]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.2-1 [26.0 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-5 [131 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-5 [143 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.8-1 [1357 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-11 [156 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-11 [495 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-11 [1204 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.11.2-2 [131 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20230130 [104 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.19+dfsg-6 [127 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfontenc1 armhf 1:1.1.4-1 [22.3 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-4 [329 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-2 [112 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.87.0-2 [328 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.87.0-2 [332 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.5-1 [1204 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1894 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1218 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [64.6 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.16+ds-3 [367 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 5.3.0-3 [130 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.14-1+b1 [124 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1+b1 [164 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4.1 [9176 B]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libtiff6 armhf 4.5.0-4 [292 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.4-0.1 [98.4 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.4-0.1 [106 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.2.0-1 [65.4 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf python3-avro all 1.11.1+dfsg-2 [70.5 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 66.1.1-1 [296 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf python3-renderpm armhf 3.6.12-1 [65.9 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab-accel armhf 3.6.12-1 [39.2 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.4.0-1.1 [436 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab all 3.6.12-1 [564 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf python3-biopython armhf 1.80+dfsg-4 [1574 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 5.1.0+dfsg-2 [110 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-3 [14.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-3 [9880 B]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.19+dfsg-6 [382 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3-execnet all 1.9.0-1 [41.5 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.7.0-7+rpi1 [707 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.7.0-7+rpi1 [10.4 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-iso8601 all 1.0.2-1 [15.7 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 23.0-1 [32.5 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.7.1-1 [32.1 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-pbcommand all 2.1.1+git20220616.3f2e6c2-2 [90.7 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-pysam armhf 0.20.0+ds-3+rpi1 [2017 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-pbcore all 2.1.2+dfsg-5 [2830 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.2.1-2 [236 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 66.1.1-1 [521 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-runner all 2.11.1-4 [8432 B]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-xdist all 3.1.0-1 [39.6 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.10.0-4+rpi1 [13.6 MB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-uritools all 4.0.0-1 [25.3 kB]
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libnghttp2-14:armhf (1.51.0-1) ...
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Setting up autotools-dev (20220109.1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up liblzf1:armhf (3.6-3) ...
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Setting up libpng16-16:armhf (1.6.39-2) ...
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Setting up libwebp7:armhf (1.2.4-0.1) ...
Setting up mount (2.38.1-5) ...
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Setting up libopenjp2-7:armhf (2.5.0-1+b1) ...
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Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up openssl (3.0.8-1) ...
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Setting up libxml2:armhf (2.9.14+dfsg-1.1+b1) ...
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Setting up libpython3-stdlib:armhf (3.11.2-1) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-11) ...
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Setting up libcurl3-gnutls:armhf (7.87.0-2) ...
Setting up python3 (3.11.2-1) ...
Setting up python3-tz (2022.7.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up python3-six (1.16.0-4) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up python3-roman (3.3-3) ...
Setting up python3-decorator (5.1.1-3) ...
Setting up python3-packaging (23.0-1) ...
Setting up python3-iso8601 (1.0.2-1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-4) ...
Setting up python3-certifi (2022.9.24-1) ...
Setting up python3-avro (1.11.1+dfsg-2) ...
Setting up python3-reportlab-accel:armhf (3.6.12-1) ...
Setting up python3-idna (3.3-1) ...
Setting up libjs-sphinxdoc (5.3.0-3) ...
Setting up python3-urllib3 (1.26.12-1) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-9) ...
Setting up libcurl4:armhf (7.87.0-2) ...
Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ...
Setting up python3-execnet (1.9.0-1) ...
Setting up python3-lib2to3 (3.11.2-2) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-11) ...
Setting up python3-uritools (4.0.0-1) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-2) ...
Setting up dh-python (5.20230130) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-attr (22.2.0-1) ...
Setting up libhts3:armhf (1.16+ds-3) ...
Setting up python3-pysam (0.20.0+ds-3+rpi1) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-charset-normalizer (3.0.1-2) ...
Setting up python3-pytest (7.2.1-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.11.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-chardet (5.1.0+dfsg-2) ...
Setting up libraqm0:armhf (0.7.0-4.1) ...
Setting up python3-requests (2.28.1+dfsg-1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up libhdf5-103-1:armhf (1.10.8+repack1-1) ...
Setting up python3-pytest-runner (2.11.1-4) ...
Setting up libhdf5-hl-100:armhf (1.10.8+repack1-1) ...
Setting up python3-scipy (1.10.0-4+rpi1) ...
Setting up python3-pytest-xdist (3.1.0-1) ...
Setting up python3-h5py-serial (3.7.0-7+rpi1) ...
Setting up debhelper (13.11.4) ...
Setting up fonts-urw-base35 (20200910-7) ...
Setting up python3-pil:armhf (9.4.0-1.1) ...
Setting up python3-h5py (3.7.0-7+rpi1) ...
Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-2) ...
Setting up python3-reportlab (3.6.12-1) ...
Setting up python3-renderpm:armhf (3.6.12-1) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Processing triggers for libc-bin (2.36-8+rpi1) ...
Setting up docutils-common (0.19+dfsg-6) ...
Setting up python3-biopython (1.80+dfsg-4) ...
Setting up python3-pbcore (2.1.2+dfsg-5) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.19+dfsg-6) ...
Setting up sbuild-build-depends-kineticstools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi1 dpkg-dev_1.21.20+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-8+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.131 apt_2.5.5 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi1 binutils-arm-linux-gnueabihf_2.40-2+rpi1 binutils-common_2.40-2+rpi1 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1 docutils-common_0.19+dfsg-6 dpkg_1.21.20+rpi1 dpkg-dev_1.21.20+rpi1 dwz_0.15-1 e2fsprogs_1.46.6-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-4 fonts-urw-base35_20200910-7 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-11 gettext-base_0.21-11 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-5 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-3 libaec0_1.0.6-1 libapt-pkg6.0_2.5.5 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b1 libbinutils_2.40-2+rpi1 libblas3_3.11.0-2 libblkid1_2.38.1-5 libboost-iostreams1.74.0_1.74.0+ds1-20 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-8+rpi1 libc-dev-bin_2.36-8+rpi1 libc6_2.36-8+rpi1 libc6-dev_2.36-8+rpi1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-3 libcap2-bin_1:2.66-3 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.46.6-1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi1 libctf0_2.40-2+rpi1 libcurl3-gnutls_7.87.0-2 libcurl4_7.87.0-2 libcwidget4_0.5.18-6 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.267 libdebhelper-perl_13.11.4 libdeflate0_1.14-1 libdpkg-perl_1.21.20+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-1 libext2fs2_1.46.6-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontenc1_1:1.1.4-1 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.74.5-1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-5 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-1 libharfbuzz0b_6.0.0+dfsg-3 libhdf5-103-1_1.10.8+repack1-1 libhdf5-hl-100_1.10.8+repack1-1 libhogweed6_3.8.1-2 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu72_72.1-3 libidn2-0_2.3.3-1 libimagequant0_2.17.0-1 libisl23_0.25-1 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg62-turbo_1:2.1.5-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_5.3.0-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.3-2 liblapack3_3.11.0-2 liblbfgsb0_3.0+dfsg.3-11 liblcms2-2_2.14-1+b1 libldap-2.4-2_2.4.59+dfsg-1+b1 libldap-2.5-0_2.5.13+dfsg-5+rpi1 libldap-common_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-2 liblz4-1_1.9.4-1+rpi1 liblzf1_3.6-3 liblzma5_5.4.1-0.1 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-1+b1 libp11-kit0_0.24.1-2 libpam-cap_1:2.66-3 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpng16-16_1.6.39-2 libpsl5_0.21.2-1 libpython3-stdlib_3.11.2-1 libpython3.11-minimal_3.11.2-4 libpython3.11-stdlib_3.11.2-4 libraqm0_0.7.0-4.1 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.4-2 libsigc++-2.0-0v5_2.12.0-1 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-1 libss2_1.46.6-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.8-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.5-2+rpi1 libsz2_1.0.6-1 libtasn1-6_4.19.0-2 libtiff6_4.5.0-4 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.5-2+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-5 libwebp7_1.2.4-0.1 libwebpdemux2_1.2.4-0.1 libwebpmux3_1.2.4-0.1 libxapian30_1.4.22-1 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.14+dfsg-1.1+b1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6-1 lsb-base_11.4+rpi1 m4_1.4.19-3 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_10.0.0 mime-support_3.66 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4-2 ncurses-bin_6.4-2 netbase_6.4 openssl_3.0.8-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.2-1 python3-attr_22.2.0-1 python3-avro_1.11.1+dfsg-2 python3-biopython_1.80+dfsg-4 python3-certifi_2022.9.24-1 python3-chardet_5.1.0+dfsg-2 python3-charset-normalizer_3.0.1-2 python3-decorator_5.1.1-3 python3-distutils_3.11.2-2 python3-docutils_0.19+dfsg-6 python3-execnet_1.9.0-1 python3-h5py_3.7.0-7+rpi1 python3-h5py-serial_3.7.0-7+rpi1 python3-idna_3.3-1 python3-iniconfig_1.1.1-2 python3-iso8601_1.0.2-1 python3-lib2to3_3.11.2-2 python3-minimal_3.11.2-1 python3-more-itertools_8.10.0-2 python3-numpy_1:1.24.2-1 python3-packaging_23.0-1 python3-pbcommand_2.1.1+git20220616.3f2e6c2-2 python3-pbcore_2.1.2+dfsg-5 python3-pil_9.4.0-1.1 python3-pkg-resources_66.1.1-1 python3-pluggy_1.0.0+repack-1 python3-py_1.11.0-1 python3-pysam_0.20.0+ds-3+rpi1 python3-pytest_7.2.1-2 python3-pytest-runner_2.11.1-4 python3-pytest-xdist_3.1.0-1 python3-renderpm_3.6.12-1 python3-reportlab_3.6.12-1 python3-reportlab-accel_3.6.12-1 python3-requests_2.28.1+dfsg-1 python3-roman_3.3-3 python3-scipy_1.10.0-4+rpi1 python3-setuptools_66.1.1-1 python3-six_1.16.0-4 python3-tz_2022.7.1-1 python3-uritools_4.0.0-1 python3-urllib3_1.26.12-1 python3.11_3.11.2-4 python3.11-minimal_3.11.2-4 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kineticstools-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sgml-base_1.31 sysvinit-utils_3.06-2 tar_1.34+dfsg-1 tzdata_2022g-5 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+6 xml-core_0.18+nmu1 xz-utils_5.4.1-0.1 zlib1g_1:1.2.13.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Wed Dec 21 14:37:16 2022 UTC
gpgv:                using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting kineticstools in /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying man-pages.patch
dpkg-source: info: applying tests-import.patch
dpkg-source: info: applying verbose-testing.patch
dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying tests2to3.patch
dpkg-source: info: applying man-align-cols.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 0.6.1+git20220223.1326a4d+dfsg-2+b2

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4064c765-7d6e-4cc0-a7a5-5d216fdba4ec
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package kineticstools
dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-2+b2
dpkg-buildpackage: info: source distribution bookworm-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean 
running clean
removing '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf .pytest_cache
rm -rf kineticsTools.egg-info
rm -f nosetests.xml
rm -f bin/ipdSummary
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
running egg_info
creating kineticsTools.egg-info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'kineticsTools.resources' as data is deprecated, please list it in `packages`.
    !!


    ############################
    # Package would be ignored #
    ############################
    Python recognizes 'kineticsTools.resources' as an importable package,
    but it is not listed in the `packages` configuration of setuptools.

    'kineticsTools.resources' has been automatically added to the distribution only
    because it may contain data files, but this behavior is likely to change
    in future versions of setuptools (and therefore is considered deprecated).

    Please make sure that 'kineticsTools.resources' is included as a package by using
    the `packages` configuration field or the proper discovery methods
    (for example by using `find_namespace_packages(...)`/`find_namespace:`
    instead of `find_packages(...)`/`find:`).

    You can read more about "package discovery" and "data files" on setuptools
    documentation page.


!!

  check.warn(importable)
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build
creating build/temp.linux-armhf-cpython-311
creating build/temp.linux-armhf-cpython-311/kineticsTools
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-cpython-311/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/kineticsTools/tree_predict.o -L/usr/lib/arm-linux-gnueabihf -o /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
cp kineticsTools/ipdSummary.py bin/ipdSummary
chmod +x bin/ipdSummary
PYTHONPATH=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg PATH=$PATH:/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/bin dh_auto_test
I: pybuild base:240: cd /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build; python3.11 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11
cachedir: .pytest_cache
rootdir: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg, configfile: pytest.ini
plugins: xdist-3.1.0
gw0 I / gw1 I / gw2 I / gw3 I

[gw0] linux Python 3.11.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build

[gw1] linux Python 3.11.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build

[gw2] linux Python 3.11.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build

[gw3] linux Python 3.11.2 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build

[gw0] Python 3.11.2 (main, Feb 12 2023, 00:48:52) [GCC 12.2.0]

[gw1] Python 3.11.2 (main, Feb 12 2023, 00:48:52) [GCC 12.2.0]

[gw2] Python 3.11.2 (main, Feb 12 2023, 00:48:52) [GCC 12.2.0]

[gw3] Python 3.11.2 (main, Feb 12 2023, 00:48:52) [GCC 12.2.0]
gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19]

scheduling tests via LoadScopeScheduling

test/test_ReferenceUtils.py::TestReferenceUtils::test_bam 
test/test_ipdModel.py::TestIpdModel::test_refLength 
[gw0] [  5%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam 
test/test_integration.py::TestKineticsTools::test_help 
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 
[gw1] [ 10%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 
[gw3] [ 15%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength 
test/test_ipdModel.py::TestIpdModel::test_snippetFunc 
test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset 
[gw0] [ 21%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset 
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 
[gw1] [ 26%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 
[gw3] [ 31%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc 
test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow 
[gw0] [ 36%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow 
test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows 
[gw0] [ 42%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows 
test/test_loader.py::test_basic 
[gw1] [ 47%] PASSED test/test_loader.py::test_basic 
test/test_loader.py::test_path 
[gw1] [ 52%] PASSED test/test_loader.py::test_path 
test/test_loader.py::test_path_with_prefixed_chem 
[gw1] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem 
test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks 
test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow 
test/test_loader.py::test_getResourcePathSpec 
[gw0] [ 63%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks 
[gw3] [ 68%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow 
[gw1] [ 73%] PASSED test/test_loader.py::test_getResourcePathSpec 
test/test_summarize_modifications.py::TestSummarizeModifications::test_integration 
[gw3] [ 78%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration 
[gw2] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help 
test/test_integration.py::TestKineticsTools::test_ecoli_first_50k 
[gw2] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k 
test/test_outputs.py::TestOutputs::test_csv_output 
[gw2] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output 
test/test_outputs.py::TestOutputs::test_bigwig 
[gw2] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig 

- generated xml file: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml -
============================= slowest 20 durations =============================
6.67s call     .pybuild/cpython3_3.11_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.06s setup    .pybuild/cpython3_3.11_kineticstools/build/test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
0.05s setup    .pybuild/cpython3_3.11_kineticstools/build/test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
0.03s setup    .pybuild/cpython3_3.11_kineticstools/build/test/test_loader.py::test_getResourcePathSpec
0.01s setup    .pybuild/cpython3_3.11_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
0.01s setup    .pybuild/cpython3_3.11_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s setup    .pybuild/cpython3_3.11_kineticstools/build/test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
0.01s call     .pybuild/cpython3_3.11_kineticstools/build/test/test_loader.py::test_basic

(12 durations < 0.005s hidden.  Use -vv to show these durations.)
======================== 5 passed, 14 skipped in 16.64s ========================
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_auto_install
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
running egg_info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'kineticsTools.resources' as data is deprecated, please list it in `packages`.
    !!


    ############################
    # Package would be ignored #
    ############################
    Python recognizes 'kineticsTools.resources' as an importable package,
    but it is not listed in the `packages` configuration of setuptools.

    'kineticsTools.resources' has been automatically added to the distribution only
    because it may contain data files, but this behavior is likely to change
    in future versions of setuptools (and therefore is considered deprecated).

    Please make sure that 'kineticsTools.resources' is included as a package by using
    the `packages` configuration field or the proper discovery methods
    (for example by using `find_namespace_packages(...)`/`find_namespace:`
    instead of `find_packages(...)`/`find:`).

    You can read more about "package discovery" and "data files" on setuptools
    documentation page.


!!

  check.warn(importable)
running build_ext
running install_lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/loader.cpython-311.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/loader.py to loader.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-311.pyc
running install_egg_info
Copying kineticsTools.egg-info to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing ipdSummary script to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
Installing summarizeModifications script to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mv debian/python3-kineticstools/usr/bin/* /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1
rst2man doc/manual.rst > /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1
doc/manual.rst:53: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
mkdir -p debian/kineticstools-data/usr/share/kineticstools
# There is probably a simpler way, but that should do for the moment.
set -e                                                              \
; for libdir in debian/python3-kineticstools/usr/lib/python3.*      \
; do rm -rf /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources                                              \
;    mv ${libdir}/dist-packages/kineticsTools/resources /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \
; done
rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installexamples -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb'.
dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-02-26T15:44:49Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.changes:
----------------------------------------------------------------

Format: 1.8
Date: Wed, 21 Dec 2022 19:59:38 +0530
Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2)
Binary: python3-kineticstools python3-kineticstools-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b2
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 python3-kineticstools - detection of DNA modifications (Python 3 library)
Changes:
 kineticstools (0.6.1+git20220223.1326a4d+dfsg-2+b2) bookworm-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 5c208754a6247c4f4cfc56e9186a35c49af32318 9217 kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.buildinfo
 813779436954190433865a11005dafd3d771be7d 5984 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb
 ed2af57b146d6639a2e91f4e91a4f62e225fd20c 46488 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb
Checksums-Sha256:
 ef2ba3ca9402c30a10ca81dffe9f4893c0dfa40004d45a1f1653ae6e2eefec51 9217 kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.buildinfo
 349bb3f54e28665cef67565f9e39ad26fabc7a6049e7342ee4903f2026b291a8 5984 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb
 78bff1208ba8cc76807c85fadd432378b0199fe0685049f4b24590d76f306598 46488 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb
Files:
 7b27bf8a0581d8b560ca1313f591f4b7 9217 science optional kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.buildinfo
 cb7cad915c575a7e1243c75d0218676e 5984 debug optional python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb
 4a1cfeab5a7430fddef4893f4a237f3e 46488 python optional python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb
--------------------------------------------------------------------------

 new Debian package, version 2.0.
 size 5984 bytes: control archive=568 bytes.
     508 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python3-kineticstools-dbgsym
 Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2)
 Version: 0.6.1+git20220223.1326a4d+dfsg-2+b2
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 18
 Depends: python3-kineticstools (= 0.6.1+git20220223.1326a4d+dfsg-2+b2)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-kineticstools
 Build-Ids: 71247e6fcef126c9db53388803525ffee627be23

drwxr-xr-x root/root         0 2022-12-21 14:29 ./
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/debug/.build-id/71/
-rw-r--r-- root/root      7468 2022-12-21 14:29 ./usr/lib/debug/.build-id/71/247e6fcef126c9db53388803525ffee627be23.debug
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/share/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools-dbgsym -> python3-kineticstools


python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b2_armhf.deb
-------------------------------------------------------------------

 new Debian package, version 2.0.
 size 46488 bytes: control archive=2136 bytes.
    1110 bytes,    20 lines      control              
    3153 bytes,    32 lines      md5sums              
     289 bytes,    12 lines   *  postinst             #!/bin/sh
     402 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-kineticstools
 Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2)
 Version: 0.6.1+git20220223.1326a4d+dfsg-2+b2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 216
 Depends: python3 (<< 3.12), python3 (>= 3.11~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20220223.1326a4d+dfsg-2)
 Section: python
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/kineticsTools
 Description: detection of DNA modifications (Python 3 library)
  Tools for detecting DNA modifications from single molecule, real-time (SMRT®)
  sequencing data. This tool implements the P_ModificationDetection module in
  SMRT® Portal, used by the RS_Modification_Detection and
  RS_Modifications_and_Motif_Detection protocol. Researchers interested in
  understanding or extending the modification detection algorithms can use these
  tools as a starting point.
  .
  This package is part of the SMRTAnalysis suite and contains the backend
  Python 3 library.

drwxr-xr-x root/root         0 2022-12-21 14:29 ./
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/python3/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/
-rw-r--r-- root/root       228 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/dependency_links.txt
-rw-r--r-- root/root       128 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/entry_points.txt
-rw-r--r-- root/root         1 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/not-zip-safe
-rw-r--r-- root/root        39 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/requires.txt
-rw-r--r-- root/root        41 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/top_level.txt
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/
-rw-r--r-- root/root      2762 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/BasicLdaEnricher.py
-rw-r--r-- root/root     34458 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/KineticWorker.py
-rw-r--r-- root/root      3700 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MedakaLdaEnricher.py
-rw-r--r-- root/root     11113 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MixtureEstimationMethods.py
-rw-r--r-- root/root     14350 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ModificationDecode.py
-rw-r--r-- root/root      5158 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteCommon.py
-rw-r--r-- root/root      9748 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteDetection.py
-rw-r--r-- root/root      5190 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/PositiveControlEnricher.py
-rw-r--r-- root/root      4365 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ReferenceUtils.py
-rw-r--r-- root/root     20650 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ResultWriter.py
-rw-r--r-- root/root      6096 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/WorkerProcess.py
-rw-r--r-- root/root         0 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/__init__.py
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/internal/
-rw-r--r-- root/root       140 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/internal/__init__.py
-rw-r--r-- root/root     20039 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ipdModel.py
-rw-r--r-- root/root     23827 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ipdSummary.py
-rw-r--r-- root/root      2118 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/loader.py
-rw-r--r-- root/root       350 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/pipelineTools.py
lrwxrwxrwx root/root         0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/resources -> ../../../../share/kineticstools/resources
-rw-r--r-- root/root       569 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/sharedArray.py
-rw-r--r-- root/root      5951 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/summarizeModifications.py
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/tasks/
-rw-r--r-- root/root         0 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/tasks/__init__.py
-rw-r--r-- root/root      3854 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/tasks/gather_bigwig.py
-rw-r--r-- root/root      5272 2022-12-21 14:29 ./usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/share/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools/
-rw-r--r-- root/root       242 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools/changelog.Debian.armhf.gz
-rw-r--r-- root/root      1617 2022-12-21 14:29 ./usr/share/doc/python3-kineticstools/changelog.Debian.gz
-rw-r--r-- root/root       234 2022-02-23 23:24 ./usr/share/doc/python3-kineticstools/changelog.gz
-rw-r--r-- root/root      2082 2022-12-21 14:24 ./usr/share/doc/python3-kineticstools/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 65976
Build-Time: 95
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1534
Job: kineticstools_0.6.1+git20220223.1326a4d+dfsg-2
Machine Architecture: armhf
Package: kineticstools
Package-Time: 1701
Source-Version: 0.6.1+git20220223.1326a4d+dfsg-2
Space: 65976
Status: successful
Version: 0.6.1+git20220223.1326a4d+dfsg-2+b2
--------------------------------------------------------------------------------
Finished at 2023-02-26T15:44:49Z
Build needed 00:28:21, 65976k disc space

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