kineticstools →
0.6.1+git20220223.1326a4d+dfsg-1+b1 →
armhf → 2022-08-26 04:04:33
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+===========================================================================================+
| kineticstools 0.6.1+git20220223.1326a4d+dfsg-1+b1 (armhf) Fri, 26 Aug 2022 03:52:04 +0000 |
+===========================================================================================+
Package: kineticstools
Version: 0.6.1+git20220223.1326a4d+dfsg-1+b1
Source Version: 0.6.1+git20220223.1326a4d+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-64010629-b920-4bc6-ad13-687b18a11a33' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.2 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 12s (2323 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'kineticstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kineticstools.git
Please use:
git clone https://salsa.debian.org/med-team/kineticstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 21.8 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-1 (dsc) [2739 B]
Get:2 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-1 (tar) [21.8 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main kineticstools 0.6.1+git20220223.1326a4d+dfsg-1 (diff) [10.3 kB]
Fetched 21.8 MB in 3s (7366 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kineticstools-j93JDr/kineticstools-0.6.1+git20220223.1326a4d+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kineticstools-j93JDr' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-X1ycCV/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-X1ycCV/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-X1ycCV/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Packages [429 B]
Fetched 2105 B in 1s (3537 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (59.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12802 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
dpkg-deb: building package 'sbuild-build-depends-kineticstools-dummy' in '/<<BUILDDIR>>/resolver-X1ycCV/apt_archive/sbuild-build-depends-kineticstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kineticstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Sources [584 B]
Get:5 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ Packages [649 B]
Fetched 2566 B in 1s (4845 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install kineticstools build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dmsetup
docutils-common dwz file fonts-urw-base35 gettext gettext-base groff-base
intltool-debian libaec0 libapparmor1 libarchive-zip-perl libargon2-1
libblas3 libbrotli1 libbsd0 libcryptsetup12 libcurl3-gnutls libcurl4
libdebhelper-perl libdeflate0 libdevmapper1.02.1 libelf1 libexpat1 libfdisk1
libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libgfortran5
libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100
libhts3 libhtscodecs2 libicu71 libimagequant0 libip4tc2 libjbig0
libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c5
libkmod2 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libmagic-mgc
libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1
libpng16-16 libpsl5 libpython3-stdlib libpython3.10-minimal
libpython3.10-stdlib libraqm0 librtmp1 libssh2-1 libsub-override-perl
libsystemd-shared libsz2 libtiff5 libtool libuchardet0 libwebp7
libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap
man-db media-types mime-support openssl po-debconf python3 python3-all
python3-attr python3-avro python3-biopython python3-certifi python3-chardet
python3-charset-normalizer python3-decorator python3-distutils
python3-docutils python3-execnet python3-h5py python3-h5py-serial
python3-idna python3-iniconfig python3-iso8601 python3-lib2to3
python3-minimal python3-more-itertools python3-numpy python3-packaging
python3-pbcommand python3-pbcore python3-pil python3-pkg-resources
python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest
python3-pytest-forked python3-pytest-runner python3-pytest-xdist
python3-renderpm python3-reportlab python3-reportlab-accel python3-requests
python3-roman python3-scipy python3-setuptools python3-six python3-tomli
python3-tz python3-uritools python3-urllib3 python3.10 python3.10-minimal
systemd w3c-sgml-lib xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build
python3-installer fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre
gettext-doc libasprintf-dev libgettextpo-dev groff liblcms2-utils
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft
muscle phylip phyml prank probcons python3-mysqldb python3-matplotlib
python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise
docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended execnet-doc python-h5py-doc
gfortran python-numpy-doc python3-dev python-pbcore-doc python-pil-doc
subversion python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools
python-reportlab-doc python3-cryptography python3-openssl python3-socks
python-requests-doc python-scipy-doc python-setuptools-doc python3-brotli
python3.10-venv python3.10-doc binfmt-support systemd-container
systemd-homed systemd-userdbd systemd-boot libfido2-1 libtss2-esys-3.0.2-0
libtss2-mu0 libtss2-rc0 policykit-1
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common publicsuffix libltdl-dev
libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils
python3-pygments python3-olefile default-dbus-system-bus | dbus-system-bus
systemd-timesyncd | time-daemon
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dmsetup
docutils-common dwz file fonts-urw-base35 gettext gettext-base groff-base
intltool-debian libaec0 libapparmor1 libarchive-zip-perl libargon2-1
libblas3 libbrotli1 libbsd0 libcryptsetup12 libcurl3-gnutls libcurl4
libdebhelper-perl libdeflate0 libdevmapper1.02.1 libelf1 libexpat1 libfdisk1
libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libgfortran5
libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100
libhts3 libhtscodecs2 libicu71 libimagequant0 libip4tc2 libjbig0
libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libjson-c5
libkmod2 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libmagic-mgc
libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1
libpng16-16 libpsl5 libpython3-stdlib libpython3.10-minimal
libpython3.10-stdlib libraqm0 librtmp1 libssh2-1 libsub-override-perl
libsystemd-shared libsz2 libtiff5 libtool libuchardet0 libwebp7
libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap
man-db media-types mime-support openssl po-debconf python3 python3-all
python3-attr python3-avro python3-biopython python3-certifi python3-chardet
python3-charset-normalizer python3-decorator python3-distutils
python3-docutils python3-execnet python3-h5py python3-h5py-serial
python3-idna python3-iniconfig python3-iso8601 python3-lib2to3
python3-minimal python3-more-itertools python3-numpy python3-packaging
python3-pbcommand python3-pbcore python3-pil python3-pkg-resources
python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest
python3-pytest-forked python3-pytest-runner python3-pytest-xdist
python3-renderpm python3-reportlab python3-reportlab-accel python3-requests
python3-roman python3-scipy python3-setuptools python3-six python3-tomli
python3-tz python3-uritools python3-urllib3 python3.10 python3.10-minimal
sbuild-build-depends-kineticstools-dummy systemd w3c-sgml-lib xml-core
0 upgraded, 148 newly installed, 0 to remove and 0 not upgraded.
Need to get 74.5 MB of archives.
After this operation, 283 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-X1ycCV/apt_archive ./ sbuild-build-depends-kineticstools-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libargon2-1 armhf 0~20171227-0.3 [19.6 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf dmsetup armhf 2:1.02.185-1 [91.8 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.185-1 [134 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libjson-c5 armhf 0.16-1 [40.0 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libcryptsetup12 armhf 2:2.5.0-2 [225 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libfdisk1 armhf 2.38.1-1 [237 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libkmod2 armhf 30+20220630-3 [51.8 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libapparmor1 armhf 3.0.7-1 [98.9 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libip4tc2 armhf 1.8.8-1 [32.9 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libsystemd-shared armhf 251.3-1+rpi1 [1526 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf systemd armhf 251.3-1+rpi1 [2985 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.6-1 [813 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.6-1 [1520 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.6-1 [1596 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.6-1 [545 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-2 [34.2 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-2 [1364 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-2 [1372 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-8 [171 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-8 [510 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9 [195 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-8 [1219 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9 [1070 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.6-1 [79.9 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.6-1 [141 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fonts-urw-base35 all 20200910-1 [6367 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.48.0-2 [72.1 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.84.0-2 [315 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.84.0-2 [321 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-7+rpi1 [238 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.3-1 [1233 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1+b1 [1240 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1+b1 [82.4 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.2.2-1 [53.1 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2+b1 [339 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.3~dfsg+~1.11.4-1 [116 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-4 [142 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.13.1-1 [125 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-1 [121 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.5.0-1 [165 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 1.2.2-2 [97.1 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 1.2.2-2 [105 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.6-1 [1060 B]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 22.1.0-1 [64.1 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf python3-avro all 1.11.0+dfsg-1 [68.1 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b2 [3423 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf python3-renderpm armhf 3.6.11-1 [69.9 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab-accel armhf 3.6.11-1 [41.3 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.2.0-1 [430 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf python3-reportlab all 3.6.11-1 [566 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf python3-biopython armhf 1.79+dfsg-3 [1402 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-2 [99.1 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-1 [10.7 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-execnet all 1.9.0-1 [41.5 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.7.0-2 [712 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.7.0-2 [13.3 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-iso8601 all 1.0.2-1 [15.7 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-2 [140 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.9-1 [116 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.27.1+dfsg-1 [71.9 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.2.1-1 [34.8 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-pbcommand all 2.1.1+git20201023.cc0ed3d-1 [90.9 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-pysam armhf 0.17.0+ds-2+b1 [1834 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-pbcore all 2.1.2+dfsg-2 [2832 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf python3-py all 1.10.0-1 [94.2 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-tomli all 2.0.1-1 [18.1 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest all 7.1.2-2 [223 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-forked all 1.4.0-1 [7704 B]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-runner all 2.11.1-2 [8640 B]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-pytest-xdist all 2.5.0-5 [49.9 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-7 [12.9 MB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf python3-uritools all 4.0.0-1 [25.3 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up python3-charset-normalizer (2.0.6-2) ...
Setting up python3-all (3.10.6-1) ...
Setting up python3-pil:armhf (9.2.0-1) ...
Setting up python3-packaging (21.3-1) ...
Setting up python3-chardet (4.0.0-2) ...
Setting up python3-requests (2.27.1+dfsg-1) ...
Setting up python3-numpy (1:1.21.5-1+b2) ...
Setting up python3-reportlab (3.6.11-1) ...
Setting up python3-pytest-runner (2.11.1-2) ...
Setting up python3-scipy (1.8.1-7) ...
Setting up python3-pytest (7.1.2-2) ...
Setting up python3-h5py-serial (3.7.0-2) ...
Setting up python3-pytest-forked (1.4.0-1) ...
Setting up python3-h5py (3.7.0-2) ...
Setting up python3-pbcommand (2.1.1+git20201023.cc0ed3d-1) ...
Setting up python3-pytest-xdist (2.5.0-5) ...
Setting up libdevmapper1.02.1:armhf (2:1.02.185-1) ...
Setting up dmsetup (2:1.02.185-1) ...
Setting up libcryptsetup12:armhf (2:2.5.0-2) ...
Setting up systemd (251.3-1+rpi1) ...
Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service.
Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service.
Initializing machine ID from random generator.
Setting up man-db (2.10.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up debhelper (13.9) ...
Processing triggers for sgml-base (1.30) ...
Setting up w3c-sgml-lib (1.3-3) ...
Processing triggers for libc-bin (2.33-8+rpi1) ...
Setting up docutils-common (0.17.1+dfsg-2) ...
Setting up python3-biopython (1.79+dfsg-3) ...
Setting up python3-pbcore (2.1.2+dfsg-2) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.17.1+dfsg-2) ...
Setting up sbuild-build-depends-kineticstools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.1.0-7+rpi1 gcc-12_12.1.0-7+rpi1 libc6-dev_2.33-8+rpi1 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 linux-libc-dev_5.18.14-1+rpi1
Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.1-6.1 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.1.0-7+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.35-3 dmsetup_2:1.02.185-1 docutils-common_0.17.1+dfsg-2 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fonts-urw-base35_20200910-1 g++_4:12.1.0-3+rpi1 g++-12_12.1.0-7+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.1.0-7+rpi1 gcc-12-base_12.1.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-8 gettext-base_0.21-8 gnupg_2.2.35-3 gnupg-l10n_2.2.35-3 gnupg-utils_2.2.35-3 gpg_2.2.35-3 gpg-agent_2.2.35-3 gpg-wks-client_2.2.35-3 gpg-wks-server_2.2.35-3 gpgconf_2.2.35-3 gpgsm_2.2.35-3 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libaec0_1.0.6-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.1.0-7+rpi1 libassuan0_2.5.5-4 libatomic1_12.1.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2+rpi1 libblas3_3.10.1-2 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.33-8+rpi1 libc-dev-bin_2.33-8+rpi1 libc6_2.33-8+rpi1 libc6-dev_2.33-8+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-7+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libcurl3-gnutls_7.84.0-2 libcurl4_7.84.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.9 libdeflate0_1.12-1 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.1.0-7+rpi1 libgcc-s1_12.1.0-7+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12.1.0-7+rpi1 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.1.0-7+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_2.7.4-1+b1 libhdf5-103-1_1.10.7+repack-4+rpi1+b1 libhdf5-hl-100_1.10.7+repack-4+rpi1+b1 libhogweed6_3.8.1-2 libhts3_1.13+ds-2+b1 libhtscodecs2_1.2.2-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libimagequant0_2.17.0-1 libip4tc2_1.8.8-1 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc_4.5.0-4 libjs-underscore_1.13.3~dfsg+~1.11.4-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack3_3.10.1-2 liblbfgsb0_3.0+dfsg.3-11 liblcms2-2_2.13.1-1 libldap-2.5-0_2.5.12+dfsg-2 liblerc4_4.0.0+ds-1 liblz4-1_1.9.3-2 liblzf1_3.6-3 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.48.0-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.5.0-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libpng16-16_1.6.37-5 libpsl5_0.21.0-1.2 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.6-1 libpython3.10-stdlib_3.10.6-1 libraqm0_0.7.0-4 libreadline8_8.1.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-7 libsasl2-modules-db_2.1.28+dfsg-7 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 libsub-override-perl_0.09-3 libsystemd-shared_251.3-1+rpi1 libsystemd0_251.3-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtiff5_4.4.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.1.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libwebp7_1.2.2-2 libwebpdemux2_1.2.2-2 libwebpmux3_1.2.2-2 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mime-support_3.66 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-all_3.10.6-1 python3-attr_22.1.0-1 python3-avro_1.11.0+dfsg-1 python3-biopython_1.79+dfsg-3 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-2 python3-charset-normalizer_2.0.6-2 python3-decorator_4.4.2-2 python3-distutils_3.10.6-1 python3-docutils_0.17.1+dfsg-2 python3-execnet_1.9.0-1 python3-h5py_3.7.0-2 python3-h5py-serial_3.7.0-2 python3-idna_3.3-1 python3-iniconfig_1.1.1-2 python3-iso8601_1.0.2-1 python3-lib2to3_3.10.6-1 python3-minimal_3.10.6-1 python3-more-itertools_8.10.0-2 python3-numpy_1:1.21.5-1+b2 python3-packaging_21.3-1 python3-pbcommand_2.1.1+git20201023.cc0ed3d-1 python3-pbcore_2.1.2+dfsg-2 python3-pil_9.2.0-1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0+repack-1 python3-py_1.10.0-1 python3-pyparsing_3.0.7-2 python3-pysam_0.17.0+ds-2+b1 python3-pytest_7.1.2-2 python3-pytest-forked_1.4.0-1 python3-pytest-runner_2.11.1-2 python3-pytest-xdist_2.5.0-5 python3-renderpm_3.6.11-1 python3-reportlab_3.6.11-1 python3-reportlab-accel_3.6.11-1 python3-requests_2.27.1+dfsg-1 python3-roman_3.3-1 python3-scipy_1.8.1-7 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-4 python3-tomli_2.0.1-1 python3-tz_2022.2.1-1 python3-uritools_4.0.0-1 python3-urllib3_1.26.9-1 python3.10_3.10.6-1 python3.10-minimal_3.10.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kineticstools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.3-1+rpi1 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 w3c-sgml-lib_1.3-3 xml-core_0.18+nmu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.oqJND9nK/trustedkeys.kbx': General error
gpgv: Signature made Sat Mar 5 12:55:32 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-1.dsc
dpkg-source: info: extracting kineticstools in /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying man-pages.patch
dpkg-source: info: applying tests-import.patch
dpkg-source: info: applying verbose-testing.patch
dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying tests2to3.patch
dpkg-source: info: applying man-align-cols.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.6.1+git20220223.1326a4d+dfsg-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-64010629-b920-4bc6-ad13-687b18a11a33
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package kineticstools
dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-1+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_auto_clean
I: pybuild base:240: python3.10 setup.py clean
running clean
removing '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
rm -rf .pytest_cache
rm -rf kineticsTools.egg-info
rm -f nosetests.xml
rm -f bin/ipdSummary
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.10 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks
running egg_info
creating kineticsTools.egg-info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/kineticsTools
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-3.10/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/kineticsTools/tree_predict.o -o /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tree_predict.cpython-310-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
cp kineticsTools/ipdSummary.py bin/ipdSummary
chmod +x bin/ipdSummary
PYTHONPATH=/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg PATH=$PATH:/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/bin dh_auto_test
I: pybuild base:240: cd /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build; python3.10 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.10.6, pytest-7.1.2, pluggy-1.0.0+repack -- /usr/bin/python3.10
cachedir: .pytest_cache
rootdir: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg, configfile: pytest.ini
plugins: forked-1.4.0, xdist-2.5.0
gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I
[gw0] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw1] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw2] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw3] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw4] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw5] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw6] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw7] linux Python 3.10.6 cwd: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build
[gw0] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
[gw1] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
[gw2] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
[gw3] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
[gw4] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
[gw5] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
[gw6] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
[gw7] Python 3.10.6 (main, Aug 10 2022, 11:19:32) [GCC 12.1.0]
gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19] / gw4 [19] / gw5 [19] / gw6 [19] / gw7 [19]
scheduling tests via LoadScopeScheduling
test/test_ipdModel.py::TestIpdModel::test_refLength
test/test_outputs.py::TestOutputs::test_csv_output
[gw5] [ 5%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output
test/test_integration.py::TestKineticsTools::test_help
[gw3] [ 10%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
[gw1] [ 15%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
[gw0] [ 21%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
[gw6] [ 26%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
test/test_ipdModel.py::TestIpdModel::test_snippetFunc
[gw3] [ 31%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc
test/test_outputs.py::TestOutputs::test_bigwig
[gw5] [ 36%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig
test/test_loader.py::test_basic
[gw4] [ 42%] PASSED test/test_loader.py::test_basic
test/test_loader.py::test_path
[gw0] [ 47%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
[gw0] [ 52%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
[gw4] [ 57%] PASSED test/test_loader.py::test_path
test/test_loader.py::test_path_with_prefixed_chem
test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
[gw0] [ 63%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
[gw0] [ 68%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
[gw3] [ 73%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
[gw1] [ 78%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
[gw4] [ 84%] PASSED test/test_loader.py::test_path_with_prefixed_chem
test/test_loader.py::test_getResourcePathSpec
[gw4] [ 89%] PASSED test/test_loader.py::test_getResourcePathSpec
[gw2] [ 94%] PASSED test/test_integration.py::TestKineticsTools::test_help
test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
[gw2] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
- generated xml file: /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/nosetests.xml -
============================= slowest 20 durations =============================
3.34s call .pybuild/cpython3_3.10_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.01s call .pybuild/cpython3_3.10_kineticstools/build/test/test_loader.py::test_getResourcePathSpec
0.01s setup .pybuild/cpython3_3.10_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
0.01s teardown .pybuild/cpython3_3.10_kineticstools/build/test/test_loader.py::test_path
0.01s setup .pybuild/cpython3_3.10_kineticstools/build/test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
0.01s teardown .pybuild/cpython3_3.10_kineticstools/build/test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
(14 durations < 0.005s hidden. Use -vv to show these durations.)
======================== 5 passed, 14 skipped in 12.55s ========================
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_auto_install
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
running build_ext
running install_lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/KineticWorker.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ModificationDecode.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ReferenceUtils.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ResultWriter.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/WorkerProcess.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ipdModel.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ipdSummary.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/loader.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/pipelineTools.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/sharedArray.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/summarizeModifications.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/internal
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/internal/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/internal
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/__init__.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-310.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-310.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__pycache__
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tree_predict.cpython-310-arm-linux-gnueabihf.so -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools
creating /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-310.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-310.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-310.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-310.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/loader.cpython-310.pyc -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__
copying /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.10_kineticstools/build/nosetests.xml -> /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/loader.py to loader.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-310.pyc
running install_egg_info
Copying kineticsTools.egg-info to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing ipdSummary script to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
Installing summarizeModifications script to /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mv debian/python3-kineticstools/usr/bin/* /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mkdir -p /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1
rst2man doc/manual.rst > /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1
doc/manual.rst:53: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
mkdir -p debian/kineticstools-data/usr/share/kineticstools
# There is probably a simpler way, but that should do for the moment.
set -e \
; for libdir in debian/python3-kineticstools/usr/lib/python3.* \
; do rm -rf /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \
; mv ${libdir}/dist-packages/kineticsTools/resources /<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \
; done
rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml
make[1]: Leaving directory '/<<BUILDDIR>>/kineticstools-0.6.1+git20220223.1326a4d+dfsg'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-08-26T04:04:23Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.changes:
----------------------------------------------------------------
Format: 1.8
Date: Sat, 05 Mar 2022 13:36:37 +0100
Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-1)
Binary: python3-kineticstools python3-kineticstools-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.6.1+git20220223.1326a4d+dfsg-1+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
python3-kineticstools - detection of DNA modifications (Python 3 library)
Changes:
kineticstools (0.6.1+git20220223.1326a4d+dfsg-1+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
780e8af34b9a58bba0c0757fde99103409ee1866 9789 kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.buildinfo
2d910566a23d88743239672fec38660893688964 5988 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
ff990b84e5714a8ca9c805bd2331d3fe768c98b7 47248 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
Checksums-Sha256:
59353e28aa7064e24093600a07dded1ef9c1421db6269bf375f76400e9dbdf26 9789 kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.buildinfo
45d451da4e8366e47ae41fa7ded84c3e0dba5ad3d6d07cefa08f69eb932fc1c9 5988 python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
ebde52c6138b63f81fbd27408f5cf462bf916279fe0e622fd2ba99223babe999 47248 python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
Files:
6d10a3480ecb6f23c1cc6f422ccf44f0 9789 science optional kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.buildinfo
92f8f2d248855dcc198138ab8931909f 5988 debug optional python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
43180a45482f0c731392de9c353b0524 47248 python optional python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
--------------------------------------------------------------------------
new Debian package, version 2.0.
size 5988 bytes: control archive=568 bytes.
508 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-kineticstools-dbgsym
Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-1)
Version: 0.6.1+git20220223.1326a4d+dfsg-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 18
Depends: python3-kineticstools (= 0.6.1+git20220223.1326a4d+dfsg-1+b1)
Section: debug
Priority: optional
Description: debug symbols for python3-kineticstools
Build-Ids: 3f149f1454210888c41b1bc7cfd06224c2ebaff9
drwxr-xr-x root/root 0 2022-03-05 12:36 ./
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root 7464 2022-03-05 12:36 ./usr/lib/debug/.build-id/3f/149f1454210888c41b1bc7cfd06224c2ebaff9.debug
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/share/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-03-05 12:36 ./usr/share/doc/python3-kineticstools-dbgsym -> python3-kineticstools
python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-1+b1_armhf.deb
-------------------------------------------------------------------
new Debian package, version 2.0.
size 47248 bytes: control archive=2136 bytes.
1110 bytes, 20 lines control
3153 bytes, 32 lines md5sums
289 bytes, 12 lines * postinst #!/bin/sh
402 bytes, 12 lines * prerm #!/bin/sh
Package: python3-kineticstools
Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-1)
Version: 0.6.1+git20220223.1326a4d+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 277
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20220223.1326a4d+dfsg-1)
Section: python
Priority: optional
Homepage: https://github.com/PacificBiosciences/kineticsTools
Description: detection of DNA modifications (Python 3 library)
Tools for detecting DNA modifications from single molecule, real-time (SMRT®)
sequencing data. This tool implements the P_ModificationDetection module in
SMRT® Portal, used by the RS_Modification_Detection and
RS_Modifications_and_Motif_Detection protocol. Researchers interested in
understanding or extending the modification detection algorithms can use these
tools as a starting point.
.
This package is part of the SMRTAnalysis suite and contains the backend
Python 3 library.
drwxr-xr-x root/root 0 2022-03-05 12:36 ./
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/
-rw-r--r-- root/root 292 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/dependency_links.txt
-rw-r--r-- root/root 129 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/entry_points.txt
-rw-r--r-- root/root 1 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/not-zip-safe
-rw-r--r-- root/root 39 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/requires.txt
-rw-r--r-- root/root 41 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools/
-rw-r--r-- root/root 2762 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/BasicLdaEnricher.py
-rw-r--r-- root/root 34458 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/KineticWorker.py
-rw-r--r-- root/root 3700 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MedakaLdaEnricher.py
-rw-r--r-- root/root 11113 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MixtureEstimationMethods.py
-rw-r--r-- root/root 14350 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ModificationDecode.py
-rw-r--r-- root/root 5158 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteCommon.py
-rw-r--r-- root/root 9748 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteDetection.py
-rw-r--r-- root/root 5190 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/PositiveControlEnricher.py
-rw-r--r-- root/root 4365 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ReferenceUtils.py
-rw-r--r-- root/root 20650 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/ResultWriter.py
-rw-r--r-- root/root 6096 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/WorkerProcess.py
-rw-r--r-- root/root 0 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/__init__.py
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools/internal/
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lrwxrwxrwx root/root 0 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools/resources -> ../../../../share/kineticstools/resources
-rw-r--r-- root/root 569 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/sharedArray.py
-rw-r--r-- root/root 5951 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/summarizeModifications.py
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools/tasks/
-rw-r--r-- root/root 0 2022-02-23 23:24 ./usr/lib/python3/dist-packages/kineticsTools/tasks/__init__.py
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-rw-r--r-- root/root 66712 2022-03-05 12:36 ./usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-310-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/share/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-03-05 12:36 ./usr/share/doc/python3-kineticstools/
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-rw-r--r-- root/root 2082 2022-03-05 12:33 ./usr/share/doc/python3-kineticstools/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 65928
Build-Time: 48
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 663
Job: kineticstools_0.6.1+git20220223.1326a4d+dfsg-1
Machine Architecture: armhf
Package: kineticstools
Package-Time: 739
Source-Version: 0.6.1+git20220223.1326a4d+dfsg-1
Space: 65928
Status: successful
Version: 0.6.1+git20220223.1326a4d+dfsg-1+b1
--------------------------------------------------------------------------------
Finished at 2022-08-26T04:04:23Z
Build needed 00:12:19, 65928k disk space